Citrus Sinensis ID: 001973
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 988 | 2.2.26 [Sep-21-2011] | |||||||
| Q46888 | 302 | Uncharacterized oxidoredu | N/A | no | 0.300 | 0.983 | 0.397 | 3e-54 | |
| P44979 | 301 | Uncharacterized oxidoredu | yes | no | 0.295 | 0.970 | 0.386 | 2e-49 | |
| Q0QLF5 | 301 | 2-(hydroxymethyl)glutarat | N/A | no | 0.296 | 0.973 | 0.350 | 1e-37 | |
| P31937 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.287 | 0.845 | 0.312 | 2e-34 | |
| Q5R5E7 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.287 | 0.845 | 0.312 | 2e-34 | |
| Q99L13 | 335 | 3-hydroxyisobutyrate dehy | yes | no | 0.287 | 0.847 | 0.309 | 2e-33 | |
| P29266 | 335 | 3-hydroxyisobutyrate dehy | yes | no | 0.286 | 0.844 | 0.311 | 3e-33 | |
| Q2HJD7 | 336 | 3-hydroxyisobutyrate dehy | yes | no | 0.287 | 0.845 | 0.312 | 5e-33 | |
| Q9V8M5 | 324 | Probable 3-hydroxyisobuty | yes | no | 0.276 | 0.842 | 0.280 | 3e-26 | |
| O34948 | 288 | Uncharacterized oxidoredu | yes | no | 0.254 | 0.871 | 0.300 | 5e-26 |
| >sp|Q46888|YGBJ_ECOLI Uncharacterized oxidoreductase YgbJ OS=Escherichia coli (strain K12) GN=ygbJ PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 196/302 (64%), Gaps = 5/302 (1%)
Query: 142 KSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL-IANSPAEAA 200
K+ S VG +GLG+MG G A +R+ + G D+ + G ++++ A A
Sbjct: 2 KTGSEFHVGIVGLGSMGMGAALSYVRAGLSTWGADLNSNACATLKEAGACGVSDNAATFA 61
Query: 201 KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKD 260
+ + L+++V N AQ + VL+G+ G L G ++++SST++ ++ L G D
Sbjct: 62 EKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALA--GFD 119
Query: 261 LKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKM 320
L+++DAPVSGG +A+ GE+T+MA+G++ + + VL A++ K+Y I G GS VK+
Sbjct: 120 LEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKI 179
Query: 321 ANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYS 380
+QLLAGVHIA+ AEAMA AR G+ V+++++T++ G+SWMFENR+ H++D DYTP+S
Sbjct: 180 IHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAGNSWMFENRMRHVVDGDYTPHS 239
Query: 381 ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE--TLSG 438
A+DIFVKD+G++A + PL +++ A +F + S AG+G++DD+AV+K++ TL G
Sbjct: 240 AVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGITLPG 299
Query: 439 VK 440
K
Sbjct: 300 AK 301
|
Escherichia coli (strain K12) (taxid: 83333) EC: 1EC: .EC: 1EC: .EC: -EC: .EC: - |
| >sp|P44979|Y1010_HAEIN Uncharacterized oxidoreductase HI_1010 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1010 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 187/295 (63%), Gaps = 3/295 (1%)
Query: 144 NSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPA-EAAKD 202
N V IGLG+MG G A + + T G D+ L K + G + + A +
Sbjct: 3 NQNYSVAVIGLGSMGMGAAVSCINAGLTTYGIDLNPVALEKLKAAGAKAVAANGYDFAHE 62
Query: 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLK 262
+ +VI+V N AQA +VL+G+ G L +G ++++SST++ + ++L G L
Sbjct: 63 LDAVVILVVNAAQANAVLFGENGIAKKLKAGTAVMVSSTMAAQDAQIISQKLTELG--LI 120
Query: 263 LVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMAN 322
++DAPVSGG +A GE+T+MA+G++++ + VL A + K+Y I G G+ VK+ +
Sbjct: 121 MLDAPVSGGAAKALKGEMTVMASGSKQAFELLQPVLDATAAKVYNIGEEIGLGATVKIVH 180
Query: 323 QLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSAL 382
QLLAGVHIA+ AEAMA ++ G+ V+++++T++ G+SWMFENR+ H+++ DYTP S +
Sbjct: 181 QLLAGVHIAAGAEAMALASKAGIPLDVMYDVVTNAAGNSWMFENRMKHVVEGDYTPLSMV 240
Query: 383 DIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLS 437
DIFVKD+G++ S PLH+++ A+ +F S AG+G++DD+AV+K++ +S
Sbjct: 241 DIFVKDLGLVNDTAKSLHFPLHLASTAYSMFTEASNAGYGKEDDSAVIKIFSGVS 295
|
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 1 EC: . EC: 1 EC: . EC: - EC: . EC: - |
| >sp|Q0QLF5|HMGD_EUBBA 2-(hydroxymethyl)glutarate dehydrogenase OS=Eubacterium barkeri GN=Hgd PE=1 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 4/297 (1%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
++GFIGLGAMG MA +LL+ TV +D+ + G + + A ++
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65
Query: 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267
+ N E+V+ G G +SA +G I+ S+VSP ++ + +G D VDAP
Sbjct: 66 TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDY--VDAP 123
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
VSGG K A G LTIM +E + VLS + + +Y + G GAG VK+ N LL G
Sbjct: 124 VSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHV-GDTGAGDAVKIVNNLLLG 182
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPH-MLDNDYTPYSALDIFV 386
++AS AEA+ G + GL + II S G S+ E ++ ++ D+ A+D+
Sbjct: 183 CNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQH 242
Query: 387 KDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKVEG 443
KD+G+ VPL ++ +A Q+F G A G GR+D +AV+KV+E ++GV V G
Sbjct: 243 KDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTGVSVSG 299
|
Catalyzes the conversion of 2-formylglutarate to (S)-2-hydroxymethylglutarate. Has very low activity with (S)-3-hydroxyisobutyrate. Eubacterium barkeri (taxid: 1528) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 9 EC: 1 |
| >sp|P31937|3HIDH_HUMAN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 150/294 (51%), Gaps = 10/294 (3%)
Query: 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVG 204
S T VGFIGLG MG MA +L++ + +I YDV+ +FQ+ G + +SPA+ A+
Sbjct: 38 SKTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKAD 97
Query: 205 VLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264
++ M+ A G G + + G+ +I SST+ P +L + ++ G +
Sbjct: 98 RIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGA--VFM 155
Query: 265 DAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQL 324
DAPVSGGV A G LT M G E+ + +L + + V G G G K+ N +
Sbjct: 156 DAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNV-VYCGAVGTGQAAKICNNM 214
Query: 325 LAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE--NRVPHMLD-----NDYT 377
L + + AEAM G RLGL+ ++L I+ S G W + N VP ++D N+Y
Sbjct: 215 LLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQ 274
Query: 378 PYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVK 431
+ KD+G+ S + P+ + ++AHQ++ A G+ ++D ++V +
Sbjct: 275 GGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q5R5E7|3HIDH_PONAB 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 150/294 (51%), Gaps = 10/294 (3%)
Query: 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVG 204
S T VGFIGLG MG MA +L++ + +I YDV+ +FQ+ G + +SPA+ A+
Sbjct: 38 SKTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKAD 97
Query: 205 VLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264
++ M+ A G G + + G+ +I SST+ P +L + ++ G +
Sbjct: 98 RIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGA--VFM 155
Query: 265 DAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQL 324
DAPVSGGV A G LT M G E+ + +L + + V G G G K+ N +
Sbjct: 156 DAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNV-VYCGAVGTGQAAKICNNM 214
Query: 325 LAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE--NRVPHMLD-----NDYT 377
L + + AEAM G RLGL+ ++L I+ S G W + N VP ++D N+Y
Sbjct: 215 LLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQ 274
Query: 378 PYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVK 431
+ KD+G+ S + P+ + ++AHQ++ A G+ ++D ++V +
Sbjct: 275 GGFGATLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328
|
Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q99L13|3HIDH_MOUSE 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 150/294 (51%), Gaps = 10/294 (3%)
Query: 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVG 204
S T VGFIGLG MG MA +L++ + +I YDV+ +F+ G +A+SPAE A+
Sbjct: 37 SKTPVGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKAD 96
Query: 205 VLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264
++ M+ + A V G G + + G+ +I SST+ P +L + ++ G +
Sbjct: 97 RIITMLPSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGA--VFM 154
Query: 265 DAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQL 324
DAPVSGGV A G LT M G E+ + +L + + V G G G K+ N +
Sbjct: 155 DAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNV-VYCGAVGTGQSAKICNNM 213
Query: 325 LAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE--NRVPHML-----DNDYT 377
L + + AEAM G R GL+ ++L I+ S G W + N VP ++ N+Y
Sbjct: 214 LLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMHGVPSSNNYQ 273
Query: 378 PYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVK 431
+ KD+G+ S + P+ + ++AHQ++ + G+ ++D ++V +
Sbjct: 274 GGFGTTLMAKDLGLAQDSATSTKTPILLGSLAHQIYRMMCSKGYSKKDFSSVFQ 327
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P29266|3HIDH_RAT 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 144 bits (363), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 152/295 (51%), Gaps = 12/295 (4%)
Query: 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVG 204
S T VGFIGLG MG MA +L++ + +I YDV+ +F+ G +A+SPA+ A+
Sbjct: 37 SKTPVGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKAD 96
Query: 205 VLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264
++ M+ + + V G G + + G+ +I SST+ P +L + ++ G +
Sbjct: 97 RIITMLPSSMNSIEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGA--VFM 154
Query: 265 DAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSAL-SEKLYVIKGGCGAGSGVKMANQ 323
DAPVSGGV A G LT M G E + +L + S LY G G+G K+ N
Sbjct: 155 DAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYC--GAVGSGQSAKICNN 212
Query: 324 LLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE--NRVPHMLD-----NDY 376
+L + + AEAM G R GL+ ++L I+ S G W + N VP ++D N+Y
Sbjct: 213 MLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSSNNY 272
Query: 377 TPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVK 431
+ KD+G+ S + P+ + ++AHQ++ + G+ ++D ++V +
Sbjct: 273 QGGFGTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQ 327
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q2HJD7|3HIDH_BOVIN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 148/294 (50%), Gaps = 10/294 (3%)
Query: 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVG 204
S T VGFIG+G MG MA +L++ + +I YDV+ +F + G + +SPA+ A+
Sbjct: 38 SKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKAD 97
Query: 205 VLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264
++ M+ A G G + + G+ +I SST+ P +L + ++ G +
Sbjct: 98 RIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMVSKELAKEVEKMGA--VFM 155
Query: 265 DAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQL 324
DAPVSGGV A G LT M G EE + +L + + V G G G K+ N L
Sbjct: 156 DAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNV-VYCGAVGTGQAAKICNNL 214
Query: 325 LAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE--NRVPHMLD-----NDYT 377
L + + AEAM G RLGL+ ++L I+ S G W + N VP ++D N+Y
Sbjct: 215 LLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQ 274
Query: 378 PYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVK 431
+ KD+G+ S + P+ + + AHQ++ A G+ ++D ++V +
Sbjct: 275 GGFGTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQ 328
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9V8M5|3HIDH_DROME Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 140/285 (49%), Gaps = 12/285 (4%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
+GF+GLG MG MA++L+++ + +D+ +P G + +E AK+ ++
Sbjct: 30 NIGFVGLGNMGANMASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFVI 89
Query: 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267
M+ N A ++ Y ++ A ++ I SST+SP V L++++ +G + +DAP
Sbjct: 90 TMLPNNAIVDAS-YDEMTA-DGVNKDTIFIDSSTISPDLVKSLQKKISAKGA--RFIDAP 145
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
VSGGV A LT M GTE + +VL + +K+ G G G K+ N ++
Sbjct: 146 VSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHC-GVYGMGQAAKLCNNMMLA 204
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE--NRVPHML-----DNDYTPYS 380
+ + +EAM R GL+ V II S G W E N VP + + DY
Sbjct: 205 ISMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCWASEIYNPVPGVCPSAPANRDYAGGF 264
Query: 381 ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQD 425
+ + KD+G+ + + P+ + ++AH+++ + G G +D
Sbjct: 265 SSALITKDLGLASGVANASNSPIPLGSLAHKVYQSLCDKGLGNKD 309
|
Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|O34948|YKWC_BACSU Uncharacterized oxidoreductase YkwC OS=Bacillus subtilis (strain 168) GN=ykwC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 120/256 (46%), Gaps = 5/256 (1%)
Query: 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI 208
+GFIGLG MG MA+H+L V+ Y + G + ++ + +K+ V++
Sbjct: 5 IGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEADVIIT 64
Query: 209 MVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPV 268
MV + E V +G G + GA +I +T P ++ + K L +DAPV
Sbjct: 65 MVGYPSDVEEVYFGSNGIIENAKEGAYLIDMTTSKPSLAKKIAEAAKE--KALFALDAPV 122
Query: 269 SGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGV 328
SGG A G L IM G +E+ ++ + S + E + +G G+G KM NQ+
Sbjct: 123 SGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQY-QGPAGSGQHTKMCNQIAIAA 181
Query: 329 HIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKD 388
+ AEAMA+ + GL + IT SW N P ML ++ P + F+KD
Sbjct: 182 GMIGVAEAMAYAQKSGLEPENVLKSITTGAAGSWSLSNLAPRMLQGNFEPGFYVKHFIKD 241
Query: 389 MGIIAREC--LSQRVP 402
MGI E + + +P
Sbjct: 242 MGIALEEAELMGEEMP 257
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 1 EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 988 | ||||||
| 359491523 | 1377 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.710 | 0.785 | 0.0 | |
| 297734349 | 1509 | unnamed protein product [Vitis vinifera] | 0.990 | 0.648 | 0.785 | 0.0 | |
| 297850224 | 1376 | ketose-bisphosphate aldolase class-II fa | 0.994 | 0.714 | 0.759 | 0.0 | |
| 186478598 | 1374 | ketose-bisphosphate aldolase class-II-li | 0.994 | 0.715 | 0.757 | 0.0 | |
| 22329645 | 1373 | ketose-bisphosphate aldolase class-II-li | 0.994 | 0.715 | 0.757 | 0.0 | |
| 334182667 | 1393 | ketose-bisphosphate aldolase class-II-li | 0.994 | 0.705 | 0.742 | 0.0 | |
| 449439145 | 1372 | PREDICTED: uncharacterized protein LOC10 | 0.994 | 0.716 | 0.722 | 0.0 | |
| 8671773 | 1486 | T10O22.24 [Arabidopsis thaliana] | 0.994 | 0.661 | 0.695 | 0.0 | |
| 356522861 | 1376 | PREDICTED: uncharacterized protein LOC10 | 0.994 | 0.714 | 0.723 | 0.0 | |
| 6714293 | 1197 | F15H18.21 [Arabidopsis thaliana] | 0.936 | 0.772 | 0.703 | 0.0 |
| >gi|359491523|ref|XP_002278967.2| PREDICTED: uncharacterized protein LOC100262718 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1550 bits (4013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/981 (78%), Positives = 865/981 (88%), Gaps = 2/981 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGD-AKL 59
MVN LLEG+HL+AS EAI+LGVQ GIHPW++YDII+NAAGNSW+FKN++P LLRG+ K
Sbjct: 179 MVNGLLEGIHLVASAEAIALGVQAGIHPWIIYDIIANAAGNSWVFKNHVPQLLRGNLTKQ 238
Query: 60 HFLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119
HFLN +QN+G LDMAK+L FPLPLLAVAHQQLI G S+ H ++D LVKVWE V GV
Sbjct: 239 HFLNTAVQNVGSILDMAKSLPFPLPLLAVAHQQLISGSSYGHGHND-ATLVKVWEKVFGV 297
Query: 120 NITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179
N+T AAN E Y P EL QITAK +V RVGFIGLGAMGFGMAT LL+SNF V+G+DVY+
Sbjct: 298 NLTAAANAEIYSPLELGSQITAKPKTVKRVGFIGLGAMGFGMATSLLKSNFCVLGFDVYK 357
Query: 180 PTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILS 239
PTL++F N GGL+ SPAE +KDV VLVIMVTNEAQAESVL+GDLGAV L GASIILS
Sbjct: 358 PTLSRFANAGGLVGESPAEVSKDVDVLVIMVTNEAQAESVLFGDLGAVKVLPPGASIILS 417
Query: 240 STVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLS 299
STVSPGFV QLERRL+ E K+LKLVDAPVSGGVKRASMG LTI+A+GT+E+L S GSVLS
Sbjct: 418 STVSPGFVIQLERRLKNENKNLKLVDAPVSGGVKRASMGTLTIIASGTDEALTSAGSVLS 477
Query: 300 ALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359
ALSEKLY+I+GGCG+GS VKM NQLLAGVHIA++AEAMA GARLGLNTR LF+ IT+SGG
Sbjct: 478 ALSEKLYIIRGGCGSGSAVKMVNQLLAGVHIAASAEAMAIGARLGLNTRKLFDFITNSGG 537
Query: 360 SSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419
+SWMFENR PHML+NDYTP SALDIFVKD+GI++ EC S +VPL +ST+AHQLFL+GSAA
Sbjct: 538 TSWMFENRTPHMLNNDYTPCSALDIFVKDLGIVSHECSSYKVPLLLSTVAHQLFLSGSAA 597
Query: 420 GWGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKT 479
GWGR DDAAVVKVYETL+GVKVEG+LPV+KKE VL SLP EWP DPIDDI+ L + N KT
Sbjct: 598 GWGRYDDAAVVKVYETLTGVKVEGKLPVVKKEEVLHSLPPEWPSDPIDDIRTLDQSNLKT 657
Query: 480 LIVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDI 539
LIVLDDDPTGTQTVH IEVLTEW+V LVEQFRK+P CFFILTNSRAL+ EKA++LI DI
Sbjct: 658 LIVLDDDPTGTQTVHDIEVLTEWNVEPLVEQFRKRPKCFFILTNSRALTPEKATALIKDI 717
Query: 540 CRNLRTASNSVENTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYT 599
C N+R A+NSV N +YTVVLRGDSTLRGHFPEEA+AAVSVLGEMDAWIICPFFLQGGRYT
Sbjct: 718 CTNIRNAANSVGNIDYTVVLRGDSTLRGHFPEEANAAVSVLGEMDAWIICPFFLQGGRYT 777
Query: 600 IEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISIQLLR 659
I+DIHYV D D+LVPAGDTEFAKDASFG+KSSNLREWVEEKT GRIPASSV SISIQLLR
Sbjct: 778 IDDIHYVADSDRLVPAGDTEFAKDASFGYKSSNLREWVEEKTIGRIPASSVTSISIQLLR 837
Query: 660 KGGPDAVCERLCSLQKGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSARI 719
KGGPDAVC LCSLQKGSTCIVNAASERD+AVFAAGMIQAE KGK FLCRTAASFVSARI
Sbjct: 838 KGGPDAVCMHLCSLQKGSTCIVNAASERDMAVFAAGMIQAERKGKHFLCRTAASFVSARI 897
Query: 720 GIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAM 779
GI+ KAPILPKDLG E GGLIVVGSYVPKTTKQVEEL Q G+ +RS+E+SVDK+AM
Sbjct: 898 GIIPKAPILPKDLGINKERNGGLIVVGSYVPKTTKQVEELKLQCGQILRSIEISVDKLAM 957
Query: 780 KSLEERQEEIIRAAEMVDVFLQARKDTLLITSRVLITGKTPSESLEINLKVSSAMVEIVR 839
KS EER+EEI RAAEM DVFL+A KDTL++TSR LITGK+PSESLEIN KVSSA+VEIVR
Sbjct: 958 KSSEEREEEISRAAEMADVFLRASKDTLIMTSRELITGKSPSESLEINFKVSSALVEIVR 1017
Query: 840 RITTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAGVPLWELGPESRHPGVPYVVFP 899
RITTRPRYILAKGGITSSD+ATKALEA+RAKVVGQALAGVPLW+LGPESRHPGVPY+VFP
Sbjct: 1018 RITTRPRYILAKGGITSSDLATKALEARRAKVVGQALAGVPLWQLGPESRHPGVPYIVFP 1077
Query: 900 GNVGDNNAVANVVRSWARPVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEE 959
GNVGD+ A+A+VV+SW RP R+SSTK LLL+AE+G YAVGAFNVYN+EGVEAVVAAAEEE
Sbjct: 1078 GNVGDSKALADVVKSWVRPFRLSSTKGLLLDAERGGYAVGAFNVYNLEGVEAVVAAAEEE 1137
Query: 960 RSPAILQVRSTCFKVQYITLV 980
+SPAILQ+ + K I LV
Sbjct: 1138 QSPAILQIHPSALKQGGIPLV 1158
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734349|emb|CBI15596.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1550 bits (4013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/981 (78%), Positives = 865/981 (88%), Gaps = 2/981 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGD-AKL 59
MVN LLEG+HL+AS EAI+LGVQ GIHPW++YDII+NAAGNSW+FKN++P LLRG+ K
Sbjct: 311 MVNGLLEGIHLVASAEAIALGVQAGIHPWIIYDIIANAAGNSWVFKNHVPQLLRGNLTKQ 370
Query: 60 HFLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119
HFLN +QN+G LDMAK+L FPLPLLAVAHQQLI G S+ H ++D LVKVWE V GV
Sbjct: 371 HFLNTAVQNVGSILDMAKSLPFPLPLLAVAHQQLISGSSYGHGHND-ATLVKVWEKVFGV 429
Query: 120 NITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179
N+T AAN E Y P EL QITAK +V RVGFIGLGAMGFGMAT LL+SNF V+G+DVY+
Sbjct: 430 NLTAAANAEIYSPLELGSQITAKPKTVKRVGFIGLGAMGFGMATSLLKSNFCVLGFDVYK 489
Query: 180 PTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILS 239
PTL++F N GGL+ SPAE +KDV VLVIMVTNEAQAESVL+GDLGAV L GASIILS
Sbjct: 490 PTLSRFANAGGLVGESPAEVSKDVDVLVIMVTNEAQAESVLFGDLGAVKVLPPGASIILS 549
Query: 240 STVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLS 299
STVSPGFV QLERRL+ E K+LKLVDAPVSGGVKRASMG LTI+A+GT+E+L S GSVLS
Sbjct: 550 STVSPGFVIQLERRLKNENKNLKLVDAPVSGGVKRASMGTLTIIASGTDEALTSAGSVLS 609
Query: 300 ALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359
ALSEKLY+I+GGCG+GS VKM NQLLAGVHIA++AEAMA GARLGLNTR LF+ IT+SGG
Sbjct: 610 ALSEKLYIIRGGCGSGSAVKMVNQLLAGVHIAASAEAMAIGARLGLNTRKLFDFITNSGG 669
Query: 360 SSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419
+SWMFENR PHML+NDYTP SALDIFVKD+GI++ EC S +VPL +ST+AHQLFL+GSAA
Sbjct: 670 TSWMFENRTPHMLNNDYTPCSALDIFVKDLGIVSHECSSYKVPLLLSTVAHQLFLSGSAA 729
Query: 420 GWGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKT 479
GWGR DDAAVVKVYETL+GVKVEG+LPV+KKE VL SLP EWP DPIDDI+ L + N KT
Sbjct: 730 GWGRYDDAAVVKVYETLTGVKVEGKLPVVKKEEVLHSLPPEWPSDPIDDIRTLDQSNLKT 789
Query: 480 LIVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDI 539
LIVLDDDPTGTQTVH IEVLTEW+V LVEQFRK+P CFFILTNSRAL+ EKA++LI DI
Sbjct: 790 LIVLDDDPTGTQTVHDIEVLTEWNVEPLVEQFRKRPKCFFILTNSRALTPEKATALIKDI 849
Query: 540 CRNLRTASNSVENTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYT 599
C N+R A+NSV N +YTVVLRGDSTLRGHFPEEA+AAVSVLGEMDAWIICPFFLQGGRYT
Sbjct: 850 CTNIRNAANSVGNIDYTVVLRGDSTLRGHFPEEANAAVSVLGEMDAWIICPFFLQGGRYT 909
Query: 600 IEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISIQLLR 659
I+DIHYV D D+LVPAGDTEFAKDASFG+KSSNLREWVEEKT GRIPASSV SISIQLLR
Sbjct: 910 IDDIHYVADSDRLVPAGDTEFAKDASFGYKSSNLREWVEEKTIGRIPASSVTSISIQLLR 969
Query: 660 KGGPDAVCERLCSLQKGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSARI 719
KGGPDAVC LCSLQKGSTCIVNAASERD+AVFAAGMIQAE KGK FLCRTAASFVSARI
Sbjct: 970 KGGPDAVCMHLCSLQKGSTCIVNAASERDMAVFAAGMIQAERKGKHFLCRTAASFVSARI 1029
Query: 720 GIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAM 779
GI+ KAPILPKDLG E GGLIVVGSYVPKTTKQVEEL Q G+ +RS+E+SVDK+AM
Sbjct: 1030 GIIPKAPILPKDLGINKERNGGLIVVGSYVPKTTKQVEELKLQCGQILRSIEISVDKLAM 1089
Query: 780 KSLEERQEEIIRAAEMVDVFLQARKDTLLITSRVLITGKTPSESLEINLKVSSAMVEIVR 839
KS EER+EEI RAAEM DVFL+A KDTL++TSR LITGK+PSESLEIN KVSSA+VEIVR
Sbjct: 1090 KSSEEREEEISRAAEMADVFLRASKDTLIMTSRELITGKSPSESLEINFKVSSALVEIVR 1149
Query: 840 RITTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAGVPLWELGPESRHPGVPYVVFP 899
RITTRPRYILAKGGITSSD+ATKALEA+RAKVVGQALAGVPLW+LGPESRHPGVPY+VFP
Sbjct: 1150 RITTRPRYILAKGGITSSDLATKALEARRAKVVGQALAGVPLWQLGPESRHPGVPYIVFP 1209
Query: 900 GNVGDNNAVANVVRSWARPVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEE 959
GNVGD+ A+A+VV+SW RP R+SSTK LLL+AE+G YAVGAFNVYN+EGVEAVVAAAEEE
Sbjct: 1210 GNVGDSKALADVVKSWVRPFRLSSTKGLLLDAERGGYAVGAFNVYNLEGVEAVVAAAEEE 1269
Query: 960 RSPAILQVRSTCFKVQYITLV 980
+SPAILQ+ + K I LV
Sbjct: 1270 QSPAILQIHPSALKQGGIPLV 1290
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850224|ref|XP_002892993.1| ketose-bisphosphate aldolase class-II family protein [Arabidopsis lyrata subsp. lyrata] gi|297338835|gb|EFH69252.1| ketose-bisphosphate aldolase class-II family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1521 bits (3939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 750/987 (75%), Positives = 855/987 (86%), Gaps = 4/987 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
MVN+LLEG+HL+A+VEAISLG Q G+HPW+LYDIISNAAGNSWI+KN+IP LL+ D +
Sbjct: 176 MVNELLEGIHLVAAVEAISLGSQAGVHPWILYDIISNAAGNSWIYKNHIPLLLKDDIEGR 235
Query: 61 FLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120
FLN QNLGI D AK+L FP+PLLAVA QQLI G+S +D L K+WE VLGV
Sbjct: 236 FLNVLAQNLGIVEDKAKSLPFPVPLLAVARQQLISGISQMQGDDTATSLAKIWEKVLGVG 295
Query: 121 ITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180
I +AAN E YKPE+LAK+IT+++ V RVGFIGLGAMGFGMA HLL+SNF+V GYDVY+P
Sbjct: 296 ILEAANRELYKPEDLAKEITSQAKPVNRVGFIGLGAMGFGMAAHLLKSNFSVRGYDVYKP 355
Query: 181 TLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSS 240
TL +F+N GGL+ANSPAE KDV VLVIMVTNE QAE VLYG LGAV A+ SGA+++L+S
Sbjct: 356 TLVRFENAGGLVANSPAEVTKDVDVLVIMVTNEVQAEDVLYGHLGAVEAIPSGATVVLAS 415
Query: 241 TVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSA 300
TVSP FVSQLERRL+ EGKDLKLVDAPVSGGVKRA+MGELTIMA+GT+E+LKS G VLSA
Sbjct: 416 TVSPAFVSQLERRLENEGKDLKLVDAPVSGGVKRAAMGELTIMASGTDEALKSAGLVLSA 475
Query: 301 LSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGS 360
LSEKLYVI+GGCGAGSGVKM NQLLAGVHIASAAEAMAFGARLGLNTR LFN+I++SGG+
Sbjct: 476 LSEKLYVIQGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFNVISNSGGT 535
Query: 361 SWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420
SWMFENRVPHMLDNDYTPYSALDIFVKD+GI+ RE S++VPLHIST+AHQLFLAGSAAG
Sbjct: 536 SWMFENRVPHMLDNDYTPYSALDIFVKDLGIVTREGSSRKVPLHISTVAHQLFLAGSAAG 595
Query: 421 WGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKTL 480
WGR DDA VVKVYETL+G+KVEGRLPVLKK+ +L SLPSEWPLDP DI L N+KTL
Sbjct: 596 WGRIDDAGVVKVYETLAGIKVEGRLPVLKKQDLLNSLPSEWPLDPTADIHRLNMGNSKTL 655
Query: 481 IVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDIC 540
+VLDDDPTGTQTVH +EVLTEWSV S+ EQFRKKP CFFILTNSR+LS EKAS+LI DIC
Sbjct: 656 VVLDDDPTGTQTVHDVEVLTEWSVESISEQFRKKPACFFILTNSRSLSPEKASALIKDIC 715
Query: 541 RNLRTASNSVENTEYTVVLRGDSTLRGHFPE---EADAAVSVLGEMDAWIICPFFLQGGR 597
NL AS V N +YT+VLRGDSTLRGHFP+ EADAAVS+LGEMDAWIICPFFLQGGR
Sbjct: 716 SNLCAASKEVGNADYTIVLRGDSTLRGHFPQASLEADAAVSILGEMDAWIICPFFLQGGR 775
Query: 598 YTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISIQL 657
YTI D+HYV D D+LVPAG+TEFAKDASFG+KSSNLREWVEEKT+G IPA+SV SI IQL
Sbjct: 776 YTINDVHYVADSDRLVPAGETEFAKDASFGYKSSNLREWVEEKTAGIIPANSVQSIPIQL 835
Query: 658 LRKGGPDAVCERLCSLQKGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSA 717
LRKGGPDAVCE LCSL+KGSTCIVNAASERD+AVFAAGMIQAELKG+SFLCRTAASFVSA
Sbjct: 836 LRKGGPDAVCEFLCSLKKGSTCIVNAASERDMAVFAAGMIQAELKGRSFLCRTAASFVSA 895
Query: 718 RIGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKV 777
IGI+ K P+LPKD + ES+G LIVVGSYVPKTTKQVEEL SQ + +RS+E+SV+KV
Sbjct: 896 LIGIIPKDPVLPKDFASNKESSGALIVVGSYVPKTTKQVEELQSQHKQKLRSIEISVEKV 955
Query: 778 AMKSLEERQEEIIRAAEMVDVFLQARKDTLLITSRVLITGKTPSESLEINLKVSSAMVEI 837
A+KS E R+EEI RA EM D FL+A ++TL+++SR LITGKT SESL+IN KVSSA+VE+
Sbjct: 956 ALKSSEVREEEIRRAVEMADAFLRAGRETLIMSSRELITGKTSSESLDINSKVSSALVEV 1015
Query: 838 VRRITTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAGVPLWELGPESRHPGVPYVV 897
V +I+TRPRYILAKGGITSSD ATKAL+A+RA V+GQALAGVP+W+LGPESRHPGVPY+V
Sbjct: 1016 VSQISTRPRYILAKGGITSSDTATKALKARRALVIGQALAGVPVWKLGPESRHPGVPYIV 1075
Query: 898 FPGNVGDNNAVANVVRSWARPVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAE 957
FPGNVG++ A+A VV+SW+ V STKELLLNAEKG YAVGAFNVYN+EGVEAVVAAAE
Sbjct: 1076 FPGNVGNSTALAEVVKSWS-VVAGRSTKELLLNAEKGGYAVGAFNVYNLEGVEAVVAAAE 1134
Query: 958 EERSPAILQVRSTCFKVQYITLVTSSI 984
EE SPAILQV FK I LV+ I
Sbjct: 1135 EENSPAILQVHPGAFKQGGIPLVSCCI 1161
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186478598|ref|NP_001117303.1| ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana] gi|332191574|gb|AEE29695.1| ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1516 bits (3925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 745/984 (75%), Positives = 851/984 (86%), Gaps = 1/984 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
MVN+LLEG+HL+A+VEAISLG Q G+HPW+LYDIISNAAGNSWI+KN+IP LL+ D +
Sbjct: 177 MVNELLEGIHLVAAVEAISLGSQAGVHPWILYDIISNAAGNSWIYKNHIPLLLKDDIEGR 236
Query: 61 FLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120
FL+ QNL I D AK+L FP+PLLAVA QQLI G+S +D L K+ E VLGV
Sbjct: 237 FLDVLSQNLAIVEDKAKSLPFPVPLLAVARQQLISGISQMQGDDTATSLAKISEKVLGVG 296
Query: 121 ITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180
I +AAN E YKPE+LAK+IT ++ V R+GFIGLGAMGFGMA HLL+SNF+V GYDVY+P
Sbjct: 297 ILEAANRELYKPEDLAKEITTQAKPVNRIGFIGLGAMGFGMAAHLLKSNFSVCGYDVYKP 356
Query: 181 TLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSS 240
TL +F+N GGL ANSPAE KDV VLVIMVTNE QAE VLYG LGAV A+ SGA+++L+S
Sbjct: 357 TLVRFENAGGLAANSPAEVTKDVDVLVIMVTNEVQAEDVLYGHLGAVEAIPSGATVVLAS 416
Query: 241 TVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSA 300
TVSP FVSQLERRL+ EGKDLKLVDAPVSGGVKRA+MGELTIMA+GT+E+LKS G VLSA
Sbjct: 417 TVSPAFVSQLERRLENEGKDLKLVDAPVSGGVKRAAMGELTIMASGTDEALKSAGLVLSA 476
Query: 301 LSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGS 360
LSEKLYVIKGGCGAGSGVKM NQLLAGVHIASAAEAMAFGARLGLNTR LFN+I++SGG+
Sbjct: 477 LSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFNVISNSGGT 536
Query: 361 SWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420
SWMFENRVPHMLDNDYTPYSALDIFVKD+GI+ RE S++VPLHIST+AHQLFLAGSAAG
Sbjct: 537 SWMFENRVPHMLDNDYTPYSALDIFVKDLGIVTREGSSRKVPLHISTVAHQLFLAGSAAG 596
Query: 421 WGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKTL 480
WGR DDA VVKVYETL+G+KVEGRLPVLKK+ +L+SLP+EWP DP DI L N+KTL
Sbjct: 597 WGRIDDAGVVKVYETLAGIKVEGRLPVLKKQDLLKSLPAEWPSDPTTDIHRLNMGNSKTL 656
Query: 481 IVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDIC 540
+VLDDDPTGTQTVH +EVLTEWSV S+ EQFRKKP CFFILTNSR+LS EKAS LI DIC
Sbjct: 657 VVLDDDPTGTQTVHDVEVLTEWSVESISEQFRKKPACFFILTNSRSLSPEKASELIKDIC 716
Query: 541 RNLRTASNSVENTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTI 600
NL AS V N +YT+VLRGDSTLRGHFP+EADAAVS+LGEMDAWIICPFFLQGGRYTI
Sbjct: 717 SNLCAASKEVGNADYTIVLRGDSTLRGHFPQEADAAVSILGEMDAWIICPFFLQGGRYTI 776
Query: 601 EDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISIQLLRK 660
+D+HYV D D+LVPAG+TEFAKDASFG+KSSNLREWVEEKT+G IPA+SV SISIQLLRK
Sbjct: 777 DDVHYVADSDRLVPAGETEFAKDASFGYKSSNLREWVEEKTAGVIPANSVQSISIQLLRK 836
Query: 661 GGPDAVCERLCSLQKGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSARIG 720
GGPDAVCE LCSL+KGSTCIVNAASERD+AVFAAGMIQAELKG+SFLCRTAASFVSA IG
Sbjct: 837 GGPDAVCEFLCSLKKGSTCIVNAASERDMAVFAAGMIQAELKGRSFLCRTAASFVSALIG 896
Query: 721 IVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMK 780
I+ K P+LPKD + ES+G LIVVGSYVPKTTKQVEEL SQ + +RS+E+SV+KVA+K
Sbjct: 897 IIPKDPVLPKDFESNKESSGALIVVGSYVPKTTKQVEELQSQHNQNLRSIEISVEKVALK 956
Query: 781 SLEERQEEIIRAAEMVDVFLQARKDTLLITSRVLITGKTPSESLEINLKVSSAMVEIVRR 840
S E R EEI RA EM D FL+A ++TL+++SR LITGKT SESL+IN KVSSA+VE+V +
Sbjct: 957 SSEVRDEEIRRAVEMADAFLRAGRETLIMSSRELITGKTSSESLDINSKVSSALVEVVSQ 1016
Query: 841 ITTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAGVPLWELGPESRHPGVPYVVFPG 900
I+TRPRYILAKGGITSSD ATKAL+A+RA V+GQALAGVP+W+LGPESRHPGVPY+VFPG
Sbjct: 1017 ISTRPRYILAKGGITSSDTATKALKARRALVIGQALAGVPVWKLGPESRHPGVPYIVFPG 1076
Query: 901 NVGDNNAVANVVRSWARPVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEER 960
NVG++ A+A VV+SW+ V STKELLLNAEKG YAVGAFNVYN+EG+EAVVAAAEEE
Sbjct: 1077 NVGNSTALAEVVKSWS-VVAGRSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEEEN 1135
Query: 961 SPAILQVRSTCFKVQYITLVTSSI 984
SPAILQV FK I LV+ I
Sbjct: 1136 SPAILQVHPGAFKQGGIPLVSCCI 1159
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22329645|ref|NP_173263.2| ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana] gi|18176246|gb|AAL60010.1| unknown protein [Arabidopsis thaliana] gi|22136930|gb|AAM91809.1| unknown protein [Arabidopsis thaliana] gi|332191573|gb|AEE29694.1| ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1516 bits (3925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 745/984 (75%), Positives = 851/984 (86%), Gaps = 1/984 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
MVN+LLEG+HL+A+VEAISLG Q G+HPW+LYDIISNAAGNSWI+KN+IP LL+ D +
Sbjct: 176 MVNELLEGIHLVAAVEAISLGSQAGVHPWILYDIISNAAGNSWIYKNHIPLLLKDDIEGR 235
Query: 61 FLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120
FL+ QNL I D AK+L FP+PLLAVA QQLI G+S +D L K+ E VLGV
Sbjct: 236 FLDVLSQNLAIVEDKAKSLPFPVPLLAVARQQLISGISQMQGDDTATSLAKISEKVLGVG 295
Query: 121 ITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180
I +AAN E YKPE+LAK+IT ++ V R+GFIGLGAMGFGMA HLL+SNF+V GYDVY+P
Sbjct: 296 ILEAANRELYKPEDLAKEITTQAKPVNRIGFIGLGAMGFGMAAHLLKSNFSVCGYDVYKP 355
Query: 181 TLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSS 240
TL +F+N GGL ANSPAE KDV VLVIMVTNE QAE VLYG LGAV A+ SGA+++L+S
Sbjct: 356 TLVRFENAGGLAANSPAEVTKDVDVLVIMVTNEVQAEDVLYGHLGAVEAIPSGATVVLAS 415
Query: 241 TVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSA 300
TVSP FVSQLERRL+ EGKDLKLVDAPVSGGVKRA+MGELTIMA+GT+E+LKS G VLSA
Sbjct: 416 TVSPAFVSQLERRLENEGKDLKLVDAPVSGGVKRAAMGELTIMASGTDEALKSAGLVLSA 475
Query: 301 LSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGS 360
LSEKLYVIKGGCGAGSGVKM NQLLAGVHIASAAEAMAFGARLGLNTR LFN+I++SGG+
Sbjct: 476 LSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFNVISNSGGT 535
Query: 361 SWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420
SWMFENRVPHMLDNDYTPYSALDIFVKD+GI+ RE S++VPLHIST+AHQLFLAGSAAG
Sbjct: 536 SWMFENRVPHMLDNDYTPYSALDIFVKDLGIVTREGSSRKVPLHISTVAHQLFLAGSAAG 595
Query: 421 WGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKTL 480
WGR DDA VVKVYETL+G+KVEGRLPVLKK+ +L+SLP+EWP DP DI L N+KTL
Sbjct: 596 WGRIDDAGVVKVYETLAGIKVEGRLPVLKKQDLLKSLPAEWPSDPTTDIHRLNMGNSKTL 655
Query: 481 IVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDIC 540
+VLDDDPTGTQTVH +EVLTEWSV S+ EQFRKKP CFFILTNSR+LS EKAS LI DIC
Sbjct: 656 VVLDDDPTGTQTVHDVEVLTEWSVESISEQFRKKPACFFILTNSRSLSPEKASELIKDIC 715
Query: 541 RNLRTASNSVENTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTI 600
NL AS V N +YT+VLRGDSTLRGHFP+EADAAVS+LGEMDAWIICPFFLQGGRYTI
Sbjct: 716 SNLCAASKEVGNADYTIVLRGDSTLRGHFPQEADAAVSILGEMDAWIICPFFLQGGRYTI 775
Query: 601 EDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISIQLLRK 660
+D+HYV D D+LVPAG+TEFAKDASFG+KSSNLREWVEEKT+G IPA+SV SISIQLLRK
Sbjct: 776 DDVHYVADSDRLVPAGETEFAKDASFGYKSSNLREWVEEKTAGVIPANSVQSISIQLLRK 835
Query: 661 GGPDAVCERLCSLQKGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSARIG 720
GGPDAVCE LCSL+KGSTCIVNAASERD+AVFAAGMIQAELKG+SFLCRTAASFVSA IG
Sbjct: 836 GGPDAVCEFLCSLKKGSTCIVNAASERDMAVFAAGMIQAELKGRSFLCRTAASFVSALIG 895
Query: 721 IVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMK 780
I+ K P+LPKD + ES+G LIVVGSYVPKTTKQVEEL SQ + +RS+E+SV+KVA+K
Sbjct: 896 IIPKDPVLPKDFESNKESSGALIVVGSYVPKTTKQVEELQSQHNQNLRSIEISVEKVALK 955
Query: 781 SLEERQEEIIRAAEMVDVFLQARKDTLLITSRVLITGKTPSESLEINLKVSSAMVEIVRR 840
S E R EEI RA EM D FL+A ++TL+++SR LITGKT SESL+IN KVSSA+VE+V +
Sbjct: 956 SSEVRDEEIRRAVEMADAFLRAGRETLIMSSRELITGKTSSESLDINSKVSSALVEVVSQ 1015
Query: 841 ITTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAGVPLWELGPESRHPGVPYVVFPG 900
I+TRPRYILAKGGITSSD ATKAL+A+RA V+GQALAGVP+W+LGPESRHPGVPY+VFPG
Sbjct: 1016 ISTRPRYILAKGGITSSDTATKALKARRALVIGQALAGVPVWKLGPESRHPGVPYIVFPG 1075
Query: 901 NVGDNNAVANVVRSWARPVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEER 960
NVG++ A+A VV+SW+ V STKELLLNAEKG YAVGAFNVYN+EG+EAVVAAAEEE
Sbjct: 1076 NVGNSTALAEVVKSWS-VVAGRSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEEEN 1134
Query: 961 SPAILQVRSTCFKVQYITLVTSSI 984
SPAILQV FK I LV+ I
Sbjct: 1135 SPAILQVHPGAFKQGGIPLVSCCI 1158
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182667|ref|NP_001185028.1| ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana] gi|332191575|gb|AEE29696.1| ketose-bisphosphate aldolase class-II-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1504 bits (3894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 745/1004 (74%), Positives = 851/1004 (84%), Gaps = 21/1004 (2%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
MVN+LLEG+HL+A+VEAISLG Q G+HPW+LYDIISNAAGNSWI+KN+IP LL+ D +
Sbjct: 176 MVNELLEGIHLVAAVEAISLGSQAGVHPWILYDIISNAAGNSWIYKNHIPLLLKDDIEGR 235
Query: 61 FLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120
FL+ QNL I D AK+L FP+PLLAVA QQLI G+S +D L K+ E VLGV
Sbjct: 236 FLDVLSQNLAIVEDKAKSLPFPVPLLAVARQQLISGISQMQGDDTATSLAKISEKVLGVG 295
Query: 121 ITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180
I +AAN E YKPE+LAK+IT ++ V R+GFIGLGAMGFGMA HLL+SNF+V GYDVY+P
Sbjct: 296 ILEAANRELYKPEDLAKEITTQAKPVNRIGFIGLGAMGFGMAAHLLKSNFSVCGYDVYKP 355
Query: 181 TLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSS 240
TL +F+N GGL ANSPAE KDV VLVIMVTNE QAE VLYG LGAV A+ SGA+++L+S
Sbjct: 356 TLVRFENAGGLAANSPAEVTKDVDVLVIMVTNEVQAEDVLYGHLGAVEAIPSGATVVLAS 415
Query: 241 TVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSA 300
TVSP FVSQLERRL+ EGKDLKLVDAPVSGGVKRA+MGELTIMA+GT+E+LKS G VLSA
Sbjct: 416 TVSPAFVSQLERRLENEGKDLKLVDAPVSGGVKRAAMGELTIMASGTDEALKSAGLVLSA 475
Query: 301 LSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGS 360
LSEKLYVIKGGCGAGSGVKM NQLLAGVHIASAAEAMAFGARLGLNTR LFN+I++SGG+
Sbjct: 476 LSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFNVISNSGGT 535
Query: 361 SWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420
SWMFENRVPHMLDNDYTPYSALDIFVKD+GI+ RE S++VPLHIST+AHQLFLAGSAAG
Sbjct: 536 SWMFENRVPHMLDNDYTPYSALDIFVKDLGIVTREGSSRKVPLHISTVAHQLFLAGSAAG 595
Query: 421 WGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKTL 480
WGR DDA VVKVYETL+G+KVEGRLPVLKK+ +L+SLP+EWP DP DI L N+KTL
Sbjct: 596 WGRIDDAGVVKVYETLAGIKVEGRLPVLKKQDLLKSLPAEWPSDPTTDIHRLNMGNSKTL 655
Query: 481 IVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDIC 540
+VLDDDPTGTQTVH +EVLTEWSV S+ EQFRKKP CFFILTNSR+LS EKAS LI DIC
Sbjct: 656 VVLDDDPTGTQTVHDVEVLTEWSVESISEQFRKKPACFFILTNSRSLSPEKASELIKDIC 715
Query: 541 RNLRTASNSVENTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTI 600
NL AS V N +YT+VLRGDSTLRGHFP+EADAAVS+LGEMDAWIICPFFLQGGRYTI
Sbjct: 716 SNLCAASKEVGNADYTIVLRGDSTLRGHFPQEADAAVSILGEMDAWIICPFFLQGGRYTI 775
Query: 601 EDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISIQLLRK 660
+D+HYV D D+LVPAG+TEFAKDASFG+KSSNLREWVEEKT+G IPA+SV SISIQLLRK
Sbjct: 776 DDVHYVADSDRLVPAGETEFAKDASFGYKSSNLREWVEEKTAGVIPANSVQSISIQLLRK 835
Query: 661 GGPDAVCERLCSLQK--------------------GSTCIVNAASERDIAVFAAGMIQAE 700
GGPDAVCE LCSL+K GSTCIVNAASERD+AVFAAGMIQAE
Sbjct: 836 GGPDAVCEFLCSLKKVNFSKQISRRLLDVAFRELLGSTCIVNAASERDMAVFAAGMIQAE 895
Query: 701 LKGKSFLCRTAASFVSARIGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELI 760
LKG+SFLCRTAASFVSA IGI+ K P+LPKD + ES+G LIVVGSYVPKTTKQVEEL
Sbjct: 896 LKGRSFLCRTAASFVSALIGIIPKDPVLPKDFESNKESSGALIVVGSYVPKTTKQVEELQ 955
Query: 761 SQSGRFIRSVEVSVDKVAMKSLEERQEEIIRAAEMVDVFLQARKDTLLITSRVLITGKTP 820
SQ + +RS+E+SV+KVA+KS E R EEI RA EM D FL+A ++TL+++SR LITGKT
Sbjct: 956 SQHNQNLRSIEISVEKVALKSSEVRDEEIRRAVEMADAFLRAGRETLIMSSRELITGKTS 1015
Query: 821 SESLEINLKVSSAMVEIVRRITTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAGVP 880
SESL+IN KVSSA+VE+V +I+TRPRYILAKGGITSSD ATKAL+A+RA V+GQALAGVP
Sbjct: 1016 SESLDINSKVSSALVEVVSQISTRPRYILAKGGITSSDTATKALKARRALVIGQALAGVP 1075
Query: 881 LWELGPESRHPGVPYVVFPGNVGDNNAVANVVRSWARPVRISSTKELLLNAEKGEYAVGA 940
+W+LGPESRHPGVPY+VFPGNVG++ A+A VV+SW+ V STKELLLNAEKG YAVGA
Sbjct: 1076 VWKLGPESRHPGVPYIVFPGNVGNSTALAEVVKSWS-VVAGRSTKELLLNAEKGGYAVGA 1134
Query: 941 FNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTSSI 984
FNVYN+EG+EAVVAAAEEE SPAILQV FK I LV+ I
Sbjct: 1135 FNVYNLEGIEAVVAAAEEENSPAILQVHPGAFKQGGIPLVSCCI 1178
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439145|ref|XP_004137348.1| PREDICTED: uncharacterized protein LOC101221907 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1477 bits (3824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/984 (72%), Positives = 849/984 (86%), Gaps = 1/984 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
MV +LL+G+H +AS+EAI LGV+ GIHPW++YDIISNAAGNSW+FKNY+P+LL+GD
Sbjct: 174 MVIELLKGIHFVASLEAICLGVKAGIHPWIIYDIISNAAGNSWVFKNYVPHLLKGDVGPE 233
Query: 61 FLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120
FL + +Q++GI +D AK+ FPLPLLAV HQQL+LG SH + ++D L + W++ GV+
Sbjct: 234 FLRSLVQDMGIVMDKAKSHTFPLPLLAVTHQQLMLGSSHGYGDED-VLLEQAWKSAYGVS 292
Query: 121 ITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180
I+DAAN E Y PE+LA +IT+KS+SV RVGFIGLGAMGFGMAT L+RS+F VIGYDV++P
Sbjct: 293 ISDAANTEVYNPEQLADEITSKSSSVKRVGFIGLGAMGFGMATQLIRSDFCVIGYDVFKP 352
Query: 181 TLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSS 240
TLTKF + GGL NSPAE +KDV VLVIMVTNE Q ESVLYG+ GA+SAL GASIILSS
Sbjct: 353 TLTKFTDAGGLTGNSPAEVSKDVEVLVIMVTNETQVESVLYGEAGAISALPYGASIILSS 412
Query: 241 TVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSA 300
TVSPG+VSQLE+RL EGK+LKLVDAPVSGGV+RAS G LTIMA+GT+E+L+STGSVLSA
Sbjct: 413 TVSPGYVSQLEQRLGNEGKNLKLVDAPVSGGVQRASKGALTIMASGTKEALRSTGSVLSA 472
Query: 301 LSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGS 360
LSEKLYVIKG CGAGSGVKM NQLLAGVHIAS AEAMAFGARLGLNTR+LF +I +S G+
Sbjct: 473 LSEKLYVIKGVCGAGSGVKMVNQLLAGVHIASGAEAMAFGARLGLNTRILFEVILNSQGT 532
Query: 361 SWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420
SWMFENRVPHMLD+DY PYSALDIFVKD+GI++REC S +VPLH+S AHQLFLAGSAAG
Sbjct: 533 SWMFENRVPHMLDDDYIPYSALDIFVKDLGIVSRECASHKVPLHLSVTAHQLFLAGSAAG 592
Query: 421 WGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKTL 480
WGRQDDA VVKVYETL+GVKV+G+ P LKKE VL+SLP EWP D I DI+ L ++N+K L
Sbjct: 593 WGRQDDAGVVKVYETLTGVKVKGKPPTLKKEVVLRSLPPEWPEDVIGDIQQLNERNSKIL 652
Query: 481 IVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDIC 540
+VLDDDPTGTQTVH I+VLTEW++ SL+EQFRKKP CFFILTNSR+LSSEKA +L+ IC
Sbjct: 653 VVLDDDPTGTQTVHDIDVLTEWTLDSLIEQFRKKPQCFFILTNSRSLSSEKAGALVEQIC 712
Query: 541 RNLRTASNSVENTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTI 600
NLR AS SVE ++Y VVLRGDSTLRGHFPEEADAA+SVLG +DAWIICPFF QGGRYT+
Sbjct: 713 TNLRAASESVEYSDYMVVLRGDSTLRGHFPEEADAAISVLGVVDAWIICPFFFQGGRYTV 772
Query: 601 EDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISIQLLRK 660
+DIHYV D D+L+PAGDTEFAKDA+FG+KSSNLREWVEEKT+GRI A +VASISIQLLRK
Sbjct: 773 DDIHYVADSDELIPAGDTEFAKDATFGYKSSNLREWVEEKTAGRIQAGTVASISIQLLRK 832
Query: 661 GGPDAVCERLCSLQKGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSARIG 720
GGPDAV E LCSL+KG CIVNAASERD+AVFAAGMI+AE+KGK+FLCRTAASFVSAR+G
Sbjct: 833 GGPDAVWEYLCSLEKGRACIVNAASERDMAVFAAGMIKAEMKGKNFLCRTAASFVSARVG 892
Query: 721 IVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMK 780
I P+LPKD+G E GGLI+VGSYVPKTTKQV+EL + G F+R +EVS K++M
Sbjct: 893 ITPIPPLLPKDVGIDKERNGGLIIVGSYVPKTTKQVQELKLRCGLFLRCIEVSAAKLSMS 952
Query: 781 SLEERQEEIIRAAEMVDVFLQARKDTLLITSRVLITGKTPSESLEINLKVSSAMVEIVRR 840
+ +ER+EEI RAA + D++L+A KDTL++TSR LITGK+P ESLEIN+KVS+A+VEIV+R
Sbjct: 953 TEKEREEEIKRAAMLADIYLKAHKDTLIMTSRELITGKSPLESLEINVKVSAALVEIVQR 1012
Query: 841 ITTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAGVPLWELGPESRHPGVPYVVFPG 900
I TRPRYILAKGGITSSDIATKAL AK A++VGQAL+GVPLW+LG ESRHPGVPY+VFPG
Sbjct: 1013 INTRPRYILAKGGITSSDIATKALGAKCARIVGQALSGVPLWQLGHESRHPGVPYIVFPG 1072
Query: 901 NVGDNNAVANVVRSWARPVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEER 960
NVG++ A+A VV +W P ++SS+K++LL+AE+G YAVGAFNVYN+EGV+AVVAAAEE++
Sbjct: 1073 NVGNSEALAEVVSAWTLPAKLSSSKDILLSAERGGYAVGAFNVYNLEGVQAVVAAAEEQQ 1132
Query: 961 SPAILQVRSTCFKVQYITLVTSSI 984
SPAILQ+ K ++LV+ I
Sbjct: 1133 SPAILQIHPGALKQGGLSLVSCCI 1156
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8671773|gb|AAF78379.1|AC069551_12 T10O22.24 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1464 bits (3789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 746/1073 (69%), Positives = 851/1073 (79%), Gaps = 90/1073 (8%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
MVN+LLEG+HL+A+VEAISLG Q G+HPW+LYDIISNAAGNSWI+KN+IP LL+ D +
Sbjct: 200 MVNELLEGIHLVAAVEAISLGSQAGVHPWILYDIISNAAGNSWIYKNHIPLLLKDDIEGR 259
Query: 61 FLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120
FL+ QNL I D AK+L FP+PLLAVA QQLI G+S +D L K+ E VLGV
Sbjct: 260 FLDVLSQNLAIVEDKAKSLPFPVPLLAVARQQLISGISQMQGDDTATSLAKISEKVLGVG 319
Query: 121 ITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYD---- 176
I +AAN E YKPE+LAK+IT ++ V R+GFIGLGAMGFGMA HLL+SNF+V GYD
Sbjct: 320 ILEAANRELYKPEDLAKEITTQAKPVNRIGFIGLGAMGFGMAAHLLKSNFSVCGYDISLR 379
Query: 177 -----VYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALS 231
VY+PTL +F+N GGL ANSPAE KDV VLVIMVTNE QAE VLYG LGAV A+
Sbjct: 380 LAVSSVYKPTLVRFENAGGLAANSPAEVTKDVDVLVIMVTNEVQAEDVLYGHLGAVEAIP 439
Query: 232 SGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESL 291
SGA+++L+STVSP FVSQLERRL+ EGKDLKLVDAPVSGGVKRA+MGELTIMA+GT+E+L
Sbjct: 440 SGATVVLASTVSPAFVSQLERRLENEGKDLKLVDAPVSGGVKRAAMGELTIMASGTDEAL 499
Query: 292 KSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLF 351
KS G VLSALSEKLYVIKGGCGAGSGVKM NQLLAGVHIASAAEAMAFGARLGLNTR LF
Sbjct: 500 KSAGLVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLF 559
Query: 352 NIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQ 411
N+I++SGG+SWMFENRVPHMLDNDYTPYSALDIFVKD+GI+ RE S++VPLHIST+AHQ
Sbjct: 560 NVISNSGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVTREGSSRKVPLHISTVAHQ 619
Query: 412 LFLAGSAAGWGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKG 471
LFLAGSAAGWGR DDA VVKVYETL+G+KVEGRLPVLKK+ +L+SLP+EWP DP DI
Sbjct: 620 LFLAGSAAGWGRIDDAGVVKVYETLAGIKVEGRLPVLKKQDLLKSLPAEWPSDPTTDIHR 679
Query: 472 LIKKNAKTLIVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEK 531
L N+KTL+VLDDDPTGTQTVH +EVLTEWSV S+ EQFRKKP CFFILTNSR+LS EK
Sbjct: 680 LNMGNSKTLVVLDDDPTGTQTVHDVEVLTEWSVESISEQFRKKPACFFILTNSRSLSPEK 739
Query: 532 ASSLITDICRNLRTASNSVENTEYTVVLRGDSTLRGHFPE---EADAAVSVLGEMDAWII 588
AS LI DIC NL AS V N +YT+VLRGDSTLRGHFP+ EADAAVS+LGEMDAWII
Sbjct: 740 ASELIKDICSNLCAASKEVGNADYTIVLRGDSTLRGHFPQASLEADAAVSILGEMDAWII 799
Query: 589 CPFFLQGGRYTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPAS 648
CPFFLQGGRYTI+D+HYV D D+LVPAG+TEFAKDASFG+KSSNLREWVEEKT+G IPA+
Sbjct: 800 CPFFLQGGRYTIDDVHYVADSDRLVPAGETEFAKDASFGYKSSNLREWVEEKTAGVIPAN 859
Query: 649 SVASISIQLLRKGGPDAVCERLCSLQK--------------------------------- 675
SV SISIQLLRKGGPDAVCE LCSL+K
Sbjct: 860 SVQSISIQLLRKGGPDAVCEFLCSLKKVNFSKQISRRLLDVAFRELLVFIVVESVSPSCV 919
Query: 676 -------------GSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSARIGIV 722
GSTCIVNAASERD+AVFAAGMIQAELKG+SFLCRTAASFVSA IGI+
Sbjct: 920 ESLNSISISYVNQGSTCIVNAASERDMAVFAAGMIQAELKGRSFLCRTAASFVSALIGII 979
Query: 723 AKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEV---------- 772
K P+LPKD + ES+G LIVVGSYVPKTTKQVEEL SQ + +RS+EV
Sbjct: 980 PKDPVLPKDFESNKESSGALIVVGSYVPKTTKQVEELQSQHNQNLRSIEVREVDVTRDTY 1039
Query: 773 ---------------------SVDKVAMKSLEERQEEIIRAAEMVDVFLQARKDTLLITS 811
SV+KVA+KS E R EEI RA EM D FL+A ++TL+++S
Sbjct: 1040 ISIYHMLCMLCLLSSSNDQQISVEKVALKSSEVRDEEIRRAVEMADAFLRAGRETLIMSS 1099
Query: 812 RVLITGKTPSESLEINLKVSSAMVEIVRRITTRPRYILAKGGITSSDIATKALEAKRAKV 871
R LITGKT SESL+IN KVSSA+VE+V +I+TRPRYILAKGGITSSD ATKAL+A+RA V
Sbjct: 1100 RELITGKTSSESLDINSKVSSALVEVVSQISTRPRYILAKGGITSSDTATKALKARRALV 1159
Query: 872 VGQALAGVPLWELGPESRHPGVPYVVFPGNVGDNNAVANVVRSWARPVRISSTKELLLNA 931
+GQALAGVP+W+LGPESRHPGVPY+VFPGNVG++ A+A VV+SW+ V STKELLLNA
Sbjct: 1160 IGQALAGVPVWKLGPESRHPGVPYIVFPGNVGNSTALAEVVKSWS-VVAGRSTKELLLNA 1218
Query: 932 EKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTSSI 984
EKG YAVGAFNVYN+EG+EAVVAAAEEE SPAILQV FK I LV+ I
Sbjct: 1219 EKGGYAVGAFNVYNLEGIEAVVAAAEEENSPAILQVHPGAFKQGGIPLVSCCI 1271
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522861|ref|XP_003530061.1| PREDICTED: uncharacterized protein LOC100779987 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1463 bits (3788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 712/984 (72%), Positives = 830/984 (84%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
MV +LEG+H I +VEA+SLG + GIHPW++YDIISNAAGNSW FKNY+P LL+G+
Sbjct: 178 MVTVMLEGIHFINAVEALSLGAKIGIHPWIIYDIISNAAGNSWAFKNYVPLLLKGEVNHQ 237
Query: 61 FLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120
LN F++ L I L+MAK+L FPLP+LA H QLI G+S + DD ++KVWE V GV
Sbjct: 238 ILNTFVEELEIILNMAKSLTFPLPILAATHLQLIHGVSLVGSEDDLTAIIKVWEKVYGVK 297
Query: 121 ITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180
I+DAAN + Y PE+LA + T S S RVGFIGLGAMGFGMATHLL S F V+G+DVY+P
Sbjct: 298 ISDAANADVYNPEQLASEFTTDSKSGRRVGFIGLGAMGFGMATHLLSSKFCVVGFDVYKP 357
Query: 181 TLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSS 240
TLT+F N GGLI NSPAE +KD VL+IMVTNEAQAESVLYG+ GAVSAL GA+IILSS
Sbjct: 358 TLTRFSNAGGLIGNSPAEVSKDADVLIIMVTNEAQAESVLYGEYGAVSALPPGATIILSS 417
Query: 241 TVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSA 300
TVSP +VSQLE RL EGK+LKLVDAPVSGGV RASMG LTIMA+GT+++LKS G VL+A
Sbjct: 418 TVSPAYVSQLEHRLHNEGKNLKLVDAPVSGGVVRASMGTLTIMASGTDDALKSAGLVLAA 477
Query: 301 LSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGS 360
LSEKLY+IKGGCGAGSGVKM NQLLAGV IASAAEA+AF ARLGLNTR+LF+ I SGG+
Sbjct: 478 LSEKLYIIKGGCGAGSGVKMINQLLAGVQIASAAEAIAFAARLGLNTRLLFDFIATSGGT 537
Query: 361 SWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420
SWMFENR HM+DNDYTP SALDIFVKD+GI+ RE S +VPL +STIAHQL+LAGSAAG
Sbjct: 538 SWMFENRGQHMIDNDYTPCSALDIFVKDLGIVTRESSSWKVPLQLSTIAHQLYLAGSAAG 597
Query: 421 WGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKTL 480
WGR DDA VVKVYE L+GV+VEG+L +K+ +LQSLP EWP D + DI+ L + N+K L
Sbjct: 598 WGRIDDAGVVKVYEMLTGVRVEGKLQAQRKDVMLQSLPPEWPQDHVLDIQTLKESNSKIL 657
Query: 481 IVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDIC 540
+VLDDDPTGTQTVH IEVLTEW++ SL+EQFRK P CFFILTNSR+LSS KAS+LI +IC
Sbjct: 658 VVLDDDPTGTQTVHDIEVLTEWTIESLIEQFRKSPKCFFILTNSRSLSSGKASALIKEIC 717
Query: 541 RNLRTASNSVENTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTI 600
RNL A+ SV+N +YTVVLRGDSTLRGHFPEEADA VSVLGEMDAWI+CPFFLQGGRYTI
Sbjct: 718 RNLDAAAKSVDNIDYTVVLRGDSTLRGHFPEEADAVVSVLGEMDAWILCPFFLQGGRYTI 777
Query: 601 EDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISIQLLRK 660
EDIHYV D D LVPAGDTEFAKDASFG+KSSNLR+WVEEKT G+I SSVASISIQLLRK
Sbjct: 778 EDIHYVDDSDTLVPAGDTEFAKDASFGYKSSNLRDWVEEKTDGQILGSSVASISIQLLRK 837
Query: 661 GGPDAVCERLCSLQKGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSARIG 720
GGPDAVC+ LCSLQKGS CIVNAASERD+ VF+ GMI+AEL GK FLCRTAASFVSA +G
Sbjct: 838 GGPDAVCQHLCSLQKGSICIVNAASERDMTVFSLGMIKAELMGKRFLCRTAASFVSALMG 897
Query: 721 IVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMK 780
I++K PILP D+G E GGLIVVGSYVPKTTKQVEEL Q G+F++S+EVSV+K+AM
Sbjct: 898 IISKPPILPNDIGIARERNGGLIVVGSYVPKTTKQVEELKLQCGQFLKSIEVSVEKLAMS 957
Query: 781 SLEERQEEIIRAAEMVDVFLQARKDTLLITSRVLITGKTPSESLEINLKVSSAMVEIVRR 840
+EE +EEI RAAE+ DV+L+A KDTL++TSR LITGKT +ESL+IN KVSSA+VEIV+R
Sbjct: 958 PIEEMEEEISRAAELADVYLKAHKDTLIMTSRNLITGKTAAESLDINFKVSSALVEIVKR 1017
Query: 841 ITTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAGVPLWELGPESRHPGVPYVVFPG 900
ITT+PRYI+AKGGITSSD+ATKAL A+ AK+VGQALAG+PLW+LGPESRHPGVPY+VFPG
Sbjct: 1018 ITTKPRYIIAKGGITSSDLATKALGARCAKIVGQALAGIPLWQLGPESRHPGVPYIVFPG 1077
Query: 901 NVGDNNAVANVVRSWARPVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEER 960
NVG++ A+A VV+SW P+R++STKE+L NAEKG YAVGAFNVYN+EGVEAVV+AAEEE+
Sbjct: 1078 NVGNSTALAEVVKSWTSPIRLTSTKEILNNAEKGGYAVGAFNVYNLEGVEAVVSAAEEEQ 1137
Query: 961 SPAILQVRSTCFKVQYITLVTSSI 984
SPAILQ+ K I LV I
Sbjct: 1138 SPAILQIHPGALKQGGIPLVACCI 1161
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6714293|gb|AAF25989.1|AC013354_8 F15H18.21 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1414 bits (3660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 703/1000 (70%), Positives = 805/1000 (80%), Gaps = 75/1000 (7%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
MVN+LLEG+HL+A+VEAISLG Q G+HPW+LYDIISNAAGNSWI+KN+IP LL+ D +
Sbjct: 189 MVNELLEGIHLVAAVEAISLGSQAGVHPWILYDIISNAAGNSWIYKNHIPLLLKDDIEGR 248
Query: 61 FLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120
FL+ QNL I D AK+L FP+PLLAVA QQLI G+S +D L K+ E VLGV
Sbjct: 249 FLDVLSQNLAIVEDKAKSLPFPVPLLAVARQQLISGISQMQGDDTATSLAKISEKVLGVG 308
Query: 121 ITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180
I +AAN E YKPE+LAK+IT ++ V R+GFIGLGAMGFGMA HLL+SNF+V GYDVY+P
Sbjct: 309 ILEAANRELYKPEDLAKEITTQAKPVNRIGFIGLGAMGFGMAAHLLKSNFSVCGYDVYKP 368
Query: 181 TLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSS 240
TL +F+N GGL ANSPAE KDV VLVIMVTNE QAE VLYG LGAV A+ SGA+++L+S
Sbjct: 369 TLVRFENAGGLAANSPAEVTKDVDVLVIMVTNEVQAEDVLYGHLGAVEAIPSGATVVLAS 428
Query: 241 TVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSA 300
TVSP FVSQLERRL+ EGKDLKLVDAPVSGGVKRA+MGELTIMA+GT+E+LKS G VLSA
Sbjct: 429 TVSPAFVSQLERRLENEGKDLKLVDAPVSGGVKRAAMGELTIMASGTDEALKSAGLVLSA 488
Query: 301 LSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGS 360
LSEKLYVIKGGCGAGSGVKM NQLLAGVHIASAAEAMAFGARLGLNTR LFN+I++SGG+
Sbjct: 489 LSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFNVISNSGGT 548
Query: 361 SWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420
SWMFENRVPHMLDNDYTPYSALDIFVKD+GI+ RE S++VPLHIST+AHQLFLAGSAAG
Sbjct: 549 SWMFENRVPHMLDNDYTPYSALDIFVKDLGIVTREGSSRKVPLHISTVAHQLFLAGSAAG 608
Query: 421 WGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKTL 480
WGR DDA VVKVYETL+G+KVEGRLPVLKK+ +L+SLP+EWP DP DI L N+KTL
Sbjct: 609 WGRIDDAGVVKVYETLAGIKVEGRLPVLKKQDLLKSLPAEWPSDPTTDIHRLNMGNSKTL 668
Query: 481 IVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDIC 540
+VLDDDPTGTQTVH +EVLTEWSV S+ EQFRKKP CFFILTNSR+LS EKAS LI DIC
Sbjct: 669 VVLDDDPTGTQTVHDVEVLTEWSVESISEQFRKKPACFFILTNSRSLSPEKASELIKDIC 728
Query: 541 RNLRTASNSVENTEYTVVLRGDSTLRGHFPE---EADAAVSVLGEMDAWIICPFFLQGGR 597
NL AS V N +YT+VLRGDSTLRGHFP+ EADAAVS+LGEMDAWIICPFFLQGGR
Sbjct: 729 SNLCAASKEVGNADYTIVLRGDSTLRGHFPQASLEADAAVSILGEMDAWIICPFFLQGGR 788
Query: 598 YTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISIQL 657
YTI+D+HYV D D+LVPAG+TEFAKDASFG+KSSNLREWVEEKT+G IPA+SV SISIQL
Sbjct: 789 YTIDDVHYVADSDRLVPAGETEFAKDASFGYKSSNLREWVEEKTAGVIPANSVQSISIQL 848
Query: 658 LRKGGPDAVCERLCSLQK----------------------------------------GS 677
LRKGGPDAVCE LCSL+K GS
Sbjct: 849 LRKGGPDAVCEFLCSLKKISRRLLDVAFRELLVFIVVESVSPSCVESLNSISISYVNQGS 908
Query: 678 TCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSARIGIVAKAPILPKDLGNKIE 737
TCIVNAASERD+AVFAAGMIQAELKG+SFLCRTAASFVSA IGI+ K P+LPKD + E
Sbjct: 909 TCIVNAASERDMAVFAAGMIQAELKGRSFLCRTAASFVSALIGIIPKDPVLPKDFESNKE 968
Query: 738 STGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEV------------------------- 772
S+G LIVVGSYVPKTTKQVEEL SQ + +RS+EV
Sbjct: 969 SSGALIVVGSYVPKTTKQVEELQSQHNQNLRSIEVREVDVTRDTYISIYHMLCMLCLLSS 1028
Query: 773 ------SVDKVAMKSLEERQEEIIRAAEMVDVFLQARKDTLLITSRVLITGKTPSESLEI 826
SV+KVA+KS E R EEI RA EM D FL+A ++TL+++SR LITGKT SESL+I
Sbjct: 1029 SNDQQISVEKVALKSSEVRDEEIRRAVEMADAFLRAGRETLIMSSRELITGKTSSESLDI 1088
Query: 827 NLKVSSAMVEIVRRITTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAGVPLWELGP 886
N KVSSA+VE+V +I+TRPRYILAKGGITSSD ATKAL+A+RA V+GQALAGVP+W+LGP
Sbjct: 1089 NSKVSSALVEVVSQISTRPRYILAKGGITSSDTATKALKARRALVIGQALAGVPVWKLGP 1148
Query: 887 ESRHPGVPYVVFPGNVGDNNAVANVVRSWARPVRISSTKE 926
ESRHPGVPY+VFPGNVG++ A+A VV+SW+ V STKE
Sbjct: 1149 ESRHPGVPYIVFPGNVGNSTALAEVVKSWS-VVAGRSTKE 1187
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 988 | ||||||
| ASPGD|ASPL0000062319 | 488 | AN0873 [Emericella nidulans (t | 0.475 | 0.963 | 0.457 | 9.5e-105 | |
| UNIPROTKB|G4NEV0 | 493 | MGG_00039 "Uncharacterized pro | 0.473 | 0.949 | 0.452 | 2.7e-100 | |
| UNIPROTKB|Q48PA9 | 301 | PSPPH_0457 "3-hydroxyisobutyra | 0.285 | 0.936 | 0.447 | 3.1e-60 | |
| UNIPROTKB|Q46888 | 302 | ygbJ "predicted dehydrogenase, | 0.300 | 0.983 | 0.377 | 3.7e-53 | |
| ASPGD|ASPL0000044129 | 434 | AN2335 [Emericella nidulans (t | 0.288 | 0.656 | 0.394 | 2.8e-52 | |
| UNIPROTKB|G4NKB0 | 444 | MGG_03097 "Oxidoreductase" [Ma | 0.288 | 0.641 | 0.410 | 2.1e-51 | |
| UNIPROTKB|Q2KEY5 | 558 | MGCH7_ch7g901 "Putative unchar | 0.288 | 0.510 | 0.410 | 2.1e-51 | |
| TIGR_CMR|SPO_2560 | 299 | SPO_2560 "2-hydroxy-3-oxopropi | 0.293 | 0.969 | 0.363 | 2.4e-45 | |
| UNIPROTKB|Q0QLF5 | 301 | Hgd "2-(hydroxymethyl)glutarat | 0.296 | 0.973 | 0.323 | 3.3e-35 | |
| UNIPROTKB|P31937 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.285 | 0.839 | 0.294 | 6.4e-31 |
| ASPGD|ASPL0000062319 AN0873 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 222/485 (45%), Positives = 299/485 (61%)
Query: 446 PVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKT---LIVLDDDPTGTQTVHGIEVLTEW 502
P L L +LP E+ D + I + + T L+VLDDDPTGTQT H I VLT W
Sbjct: 5 PPLPLTQTLSTLPPEYSTDTLSQIATYLFSTSTTPRRLVVLDDDPTGTQTCHDISVLTVW 64
Query: 503 SVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDICRNLRTAS--NSVENTEYTVVLR 560
V +LV +F FFILTNSRAL ++A LI +IC+N+ TA+ + +VLR
Sbjct: 65 DVRTLVAEFSTNSAGFFILTNSRALPPDEAELLIREICQNVLTAALEMGLSRESLDIVLR 124
Query: 561 GDSTLRGHFPEEADAAVSV---LGEMDA----WIICPFFLQGGRYTIEDIHYVGDLDQLV 613
GDSTLRGHFP E D A SV + + +A W++ PFF QGGRYTI D+HYV + + LV
Sbjct: 125 GDSTLRGHFPLEVDVAQSVFYSVSDENATAPTWVLAPFFFQGGRYTINDVHYVLEGEDLV 184
Query: 614 PAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISIQLLRKGGPDAVCERLCSL 673
PAG T+FA+DA+FG+KSSNLR+++ EK GR A + S+++ +R GGP+ V +RL S
Sbjct: 185 PAGQTQFARDATFGYKSSNLRDYILEKAPGRFTAEQIHSVTLNDIRTGGPEGVRDRLLSF 244
Query: 674 QKGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSARIGIVAKAPILPKDLG 733
G I NAA+E D+ VF G++ AE KG ++ RT A+FVS R+GI K PI +L
Sbjct: 245 PAGGIVIANAAAESDMHVFVMGLLLAEAKGLRYIYRTGAAFVSTRLGIPHKPPITKAELQ 304
Query: 734 -NKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMKSLXXXXXXXXXX 792
+ TGGL++VGSYVPKTT Q++ LI + G + +E+ V+ + ++S
Sbjct: 305 LPNPQQTGGLVLVGSYVPKTTAQLKVLIERRGDLLSVIEMRVEDL-IESKEKAAEVIQSV 363
Query: 793 XXMVDVFLQARKDTLLITSRVLITGKTPSESLEINLKVSSAMVEIVRRITTRPRYILAKG 852
+ +L A KDTL++TSR L+ G SL+I +V+ A+V ++ I RPRY++AKG
Sbjct: 364 ITQTESYLNAGKDTLVMTSRALVKGDDEISSLKIGSRVAEALVGVLEGIEVRPRYVIAKG 423
Query: 853 GITSSDIATKALEAKRAKVVGQALAGVPLWELGPE-SRHPGVPYVVFPXXXXXXXXXXXX 911
GITSSD ATK L KRA +VGQA AGVPLW E SRH GVP+VVFP
Sbjct: 424 GITSSDAATKGLRMKRALIVGQAAAGVPLWRCYEETSRHRGVPFVVFPGNVGSESTLYEL 483
Query: 912 XRSWA 916
+W+
Sbjct: 484 VEAWS 488
|
|
| UNIPROTKB|G4NEV0 MGG_00039 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
Identities = 219/484 (45%), Positives = 300/484 (61%)
Query: 446 PVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKT---LIVLDDDPTGTQTVHGIEVLTEW 502
P L+ + L SL ++ DP I+ + + L+ LDDDPTGTQT +GI VL W
Sbjct: 8 PALELASTLSSLVAQTTQDPRAQIRTALSQGGTKIPILVALDDDPTGTQTCNGIPVLAVW 67
Query: 503 SVASLVEQFRK-KPLC-FFILTNSRALSSEKASSLITDICRNLRTASNSVENTEYTVVLR 560
A+L +FR+ +P FFILTNSRAL +A SLI +IC NL+ A+ + + VVLR
Sbjct: 68 DPATLTAEFRRTRPGSGFFILTNSRALHPPQARSLIREICSNLKAAAAEA-SVSFEVVLR 126
Query: 561 GDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTIEDIHYVGDLD--QLVPAGDT 618
GDSTLRGHFP E D A VLGE DA ++CPFFLQGGRYT+ D+HYV D LVPA T
Sbjct: 127 GDSTLRGHFPLECDVASEVLGEADATLLCPFFLQGGRYTLGDVHYVASEDGKTLVPAAQT 186
Query: 619 EFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISIQLLRKG-GPDAVCERLCSLQKGS 677
FA+DA+FG+ +S+LRE+V EK+ G IP VAS+ ++ R G D V +RL ++ +GS
Sbjct: 187 PFARDATFGYANSDLREYVVEKSGGAIPRERVASLPLEDTRAADGVDRVLKRLLAVDRGS 246
Query: 678 TCIVNAASERDIAVFAAGMIQA-ELKGKSFLCRTAASFVSARIGIVAKAPILPKDLGNKI 736
IVNAA+E D+ V +++A E GK +L RT A+FVS+R+GI PI + L
Sbjct: 247 VVIVNAAAEEDVDVVVLALLRAAEEHGKRYLFRTGAAFVSSRLGISPIPPISAQQL-KFT 305
Query: 737 ESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMKS----LXXXXXXXXXX 792
+ GGL++ GSYVPKTT Q+E L+ +SG + +V + V+K+ + +
Sbjct: 306 KDAGGLVIAGSYVPKTTAQLEALVHKSGDRLTTVVLDVEKLLEEKEKGVVTAEQGEVARA 365
Query: 793 XXMVDVFLQARKDTLLITSRVLITGKTPSESLEINLKVSSAMVEIVRRITTRPRYILAKG 852
+ + +D L++TSR L+ GK ++SL+I V++A+V + + TRPRY++AKG
Sbjct: 366 IEQAEKEITRGQDVLVMTSRKLVVGKDAAKSLDIGSTVAAALVSFLVNLKTRPRYVIAKG 425
Query: 853 GITSSDIATKALEAKRAKVVGQALAGVPLWELG-PESRHPGVPYVVFPXXXXXXXXXXXX 911
GITSSD+ATK L KRA++VGQA AGVPLW PES+ G+PYVVFP
Sbjct: 426 GITSSDMATKGLGFKRAEIVGQAAAGVPLWRCDEPESKWSGIPYVVFPGNVGSTETLFDV 485
Query: 912 XRSW 915
W
Sbjct: 486 VNGW 489
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| UNIPROTKB|Q48PA9 PSPPH_0457 "3-hydroxyisobutyrate dehydrogenase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 128/286 (44%), Positives = 183/286 (63%)
Query: 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTK-FQNVGGLIANSPAEAAKDVGVLV 207
VG IGLGAMG G+A LLRS FTV DV R ++T+ F GG+ SPA A V++
Sbjct: 6 VGVIGLGAMGLGIARSLLRSGFTVHACDV-RSSVTEAFAQEGGVACQSPASMAAACDVII 64
Query: 208 IMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVDAP 267
+V N Q E+VL+G+ P F +L RL ++L +DAP
Sbjct: 65 TVVVNAEQTETVLFGENGAIAALRPGCLVIGCATVAPTFAVELGERLA--AQNLLYLDAP 122
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
+SGG +A+ G++T+M +G ES ++L+ ++ K+Y + G GS VK+ NQLLAG
Sbjct: 123 ISGGAAKAAAGQMTMMTSGPAESYAKAEAILNGMAGKVYRLGDVHGLGSKVKIINQLLAG 182
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVK 387
VHIA++AEAMA G R G++ L+ +IT+S G+SWMFENRVPH+L+ DYTP SA+DIFVK
Sbjct: 183 VHIAASAEAMALGLREGVDADALYEVITNSAGNSWMFENRVPHILNADYTPLSAVDIFVK 242
Query: 388 DMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433
D+G++ S + PL +S AHQ+F+ S+ G+GR+DD+AV+K++
Sbjct: 243 DLGLVLDTARSSKFPLPLSATAHQMFMQASSTGFGREDDSAVIKIF 288
|
|
| UNIPROTKB|Q46888 ygbJ "predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 3.7e-53, P = 3.7e-53
Identities = 114/302 (37%), Positives = 184/302 (60%)
Query: 142 KSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL-IANSPAEAA 200
K+ S VG +GLG+MG G A +R+ + G D+ + G ++++ A A
Sbjct: 2 KTGSEFHVGIVGLGSMGMGAALSYVRAGLSTWGADLNSNACATLKEAGACGVSDNAATFA 61
Query: 201 KDVGVLVIMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKD 260
+ + L+++V N AQ + VL+G+ ++ L G D
Sbjct: 62 EKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALA--GFD 119
Query: 261 LKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKM 320
L+++DAPVSGG +A+ GE+T+MA+G++ + + VL A++ K+Y I G GS VK+
Sbjct: 120 LEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKI 179
Query: 321 ANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYS 380
+QLLAGVHIA+ AEAMA AR G+ V+++++T++ G+SWMFENR+ H++D DYTP+S
Sbjct: 180 IHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAGNSWMFENRMRHVVDGDYTPHS 239
Query: 381 ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE--TLSG 438
A+DIFVKD+G++A + PL +++ A +F + S AG+G++DD+AV+K++ TL G
Sbjct: 240 AVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGITLPG 299
Query: 439 VK 440
K
Sbjct: 300 AK 301
|
|
| ASPGD|ASPL0000044129 AN2335 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 2.8e-52, P = 2.8e-52
Identities = 114/289 (39%), Positives = 171/289 (59%)
Query: 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI 208
+GF+GLGAMGFGMATHL++ + V G+DV+ ++ +F+ GG+ A+S E+A+ V+
Sbjct: 6 IGFVGLGAMGFGMATHLVKQGYPVHGFDVFPASVERFKAAGGIPASSLRESAEGKSYYVV 65
Query: 209 MVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGK-DLKLVDAP 267
MV + QA+SVL+ + + + LQ G+ D++ VD P
Sbjct: 66 MVASSPQAQSVLFAEDGIVQHLPPNAVLMLCSTVSSMYAQSVVTELQNRGRSDIRFVDCP 125
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSE--KLYVIKGGCGAGSGVKMANQLL 325
VSGG RA+ G L+IMA ++E+L + +L +S+ KLY++ GG GAGS +KM +Q+L
Sbjct: 126 VSGGALRAANGTLSIMAGASDEALAAARDLLQEMSDENKLYLVPGGVGAGSNMKMVHQVL 185
Query: 326 AGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTP-YSALDI 384
A +HI A+EA F A+LGL+ R I S +WM ENR P M++ D+ P SAL I
Sbjct: 186 AAIHILGASEAQGFAAQLGLDARATAEKIQSSDAWTWMHENRFPRMVEEDWNPGVSALTI 245
Query: 385 FVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433
+KD GII QR P + + A Q +++ GWG +DD+A+V+ Y
Sbjct: 246 ILKDAGIITTTARQQRFPSPLCSTAEQTYISALLHGWGPKDDSAMVRQY 294
|
|
| UNIPROTKB|G4NKB0 MGG_03097 "Oxidoreductase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 2.1e-51, P = 2.1e-51
Identities = 119/290 (41%), Positives = 170/290 (58%)
Query: 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI 208
+ FIGLGAMGFGMATHL++ ++V G+DV+ PTL +F+ GG A++PA+A D V
Sbjct: 7 ISFIGLGAMGFGMATHLIKEGYSVTGFDVWGPTLDRFKAAGGSAASTPAQAVADKPFCVC 66
Query: 209 MVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXP-GFVSQLERRLQFEGK-DLKLVDA 266
MV QA++VL P + L+++L+ G+ D+ VD
Sbjct: 67 MVATAQQAQAVLIDGPDAAVPALPQGAVLMLCSTVPCQYAQALDQQLRDMGRGDILFVDC 126
Query: 267 PVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSE--KLYVIKGGCGAGSGVKMANQL 324
PVSGG RA+ G L+IMA ++E++ +L A+S+ KLY++ GG GAGS +KM +Q+
Sbjct: 127 PVSGGAIRAADGTLSIMAGASDEAIAKGRDILQAMSDPAKLYIVAGGVGAGSNMKMCHQV 186
Query: 325 LAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPY-SALD 383
LA I SA+EAM F A LGL+ + I S G SWMFENRVP +L ++ P SAL
Sbjct: 187 LAANQILSASEAMGFAAHLGLDLAKARDAILASDGKSWMFENRVPRILHPEHKPVASALT 246
Query: 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433
I +KD II E +R +++ A Q + G G+G DDA +++VY
Sbjct: 247 IILKDTSIITSEARRRRFATPMTSAAEQAYFVGLGLGYGPDDDAGMLRVY 296
|
|
| UNIPROTKB|Q2KEY5 MGCH7_ch7g901 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 2.1e-51, P = 2.1e-51
Identities = 119/290 (41%), Positives = 170/290 (58%)
Query: 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI 208
+ FIGLGAMGFGMATHL++ ++V G+DV+ PTL +F+ GG A++PA+A D V
Sbjct: 7 ISFIGLGAMGFGMATHLIKEGYSVTGFDVWGPTLDRFKAAGGSAASTPAQAVADKPFCVC 66
Query: 209 MVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXP-GFVSQLERRLQFEGK-DLKLVDA 266
MV QA++VL P + L+++L+ G+ D+ VD
Sbjct: 67 MVATAQQAQAVLIDGPDAAVPALPQGAVLMLCSTVPCQYAQALDQQLRDMGRGDILFVDC 126
Query: 267 PVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSE--KLYVIKGGCGAGSGVKMANQL 324
PVSGG RA+ G L+IMA ++E++ +L A+S+ KLY++ GG GAGS +KM +Q+
Sbjct: 127 PVSGGAIRAADGTLSIMAGASDEAIAKGRDILQAMSDPAKLYIVAGGVGAGSNMKMCHQV 186
Query: 325 LAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPY-SALD 383
LA I SA+EAM F A LGL+ + I S G SWMFENRVP +L ++ P SAL
Sbjct: 187 LAANQILSASEAMGFAAHLGLDLAKARDAILASDGKSWMFENRVPRILHPEHKPVASALT 246
Query: 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433
I +KD II E +R +++ A Q + G G+G DDA +++VY
Sbjct: 247 IILKDTSIITSEARRRRFATPMTSAAEQAYFVGLGLGYGPDDDAGMLRVY 296
|
|
| TIGR_CMR|SPO_2560 SPO_2560 "2-hydroxy-3-oxopropionate reductase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 485 (175.8 bits), Expect = 2.4e-45, P = 2.4e-45
Identities = 108/297 (36%), Positives = 163/297 (54%)
Query: 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI 208
+ GLG+MG+GMA LR+ V G+DV + +F GG A + AE A+ + +V+
Sbjct: 5 IAVFGLGSMGYGMAQSCLRAGIGVHGFDVVAEQVARFVKEGGSAA-AFAEVARSLDAVVV 63
Query: 209 MVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVDAPV 268
+V N AQ E VL+G+ P F ++ERR KD+ +DAP+
Sbjct: 64 VVLNAAQVEQVLFGEDGVVTQMREGAVVLACATVPPEFAKEMERRCA--EKDVLYLDAPI 121
Query: 269 SGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGV 328
SGG +A+ G L IMA+G+ + + VL A +E ++ + GAGS +K NQLLAGV
Sbjct: 122 SGGSLKAAQGRLGIMASGSAAAFAAAEPVLEATAETVFRLGDAAGAGSAMKAVNQLLAGV 181
Query: 329 HIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKD 388
HIA+ AEA+ FG G+ ++I+ G+SWM ENR PH++ DY P+S ++I+ KD
Sbjct: 182 HIAAMAEALTFGMTQGVAPDTFLDVISKCAGTSWMLENRAPHVIAGDYAPHSQVNIWPKD 241
Query: 389 MGII--ARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKVEG 443
+GI+ A + P+ + +A + G G +DDAAV KVY + + + G
Sbjct: 242 LGIVLDAAKAAGFEAPITETALAR--YRQAVDMGLGGEDDAAVAKVYAAQAKLTLPG 296
|
|
| UNIPROTKB|Q0QLF5 Hgd "2-(hydroxymethyl)glutarate dehydrogenase" [Eubacterium barkeri (taxid:1528)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 3.3e-35, P = 3.3e-35
Identities = 96/297 (32%), Positives = 146/297 (49%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
++GFIGLGAMG MA +LL+ TV +D+ + G + + A ++
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65
Query: 208 IMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLVDAP 267
+ N E+V+ G P ++ + +G D VDAP
Sbjct: 66 TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDY--VDAP 123
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
VSGG K A G LTIM +E + VLS + + +Y + G GAG VK+ N LL G
Sbjct: 124 VSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHV-GDTGAGDAVKIVNNLLLG 182
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPH-MLDNDYTPYSALDIFV 386
++AS AEA+ G + GL + II S G S+ E ++ ++ D+ A+D+
Sbjct: 183 CNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQH 242
Query: 387 KDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKVEG 443
KD+G+ VPL ++ +A Q+F G A G GR+D +AV+KV+E ++GV V G
Sbjct: 243 KDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTGVSVSG 299
|
|
| UNIPROTKB|P31937 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 6.4e-31, P = 6.4e-31
Identities = 86/292 (29%), Positives = 138/292 (47%)
Query: 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVG 204
S T VGFIGLG MG MA +L++ + +I YDV+ +FQ+ G + +SPA+ A+
Sbjct: 38 SKTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKAD 97
Query: 205 VLVIMVTNEAQAESVLYGDXXXXXXXXXXXXXXXXXXXXPGFVSQLERRLQFEGKDLKLV 264
++ M+ A G P +L + ++ G +
Sbjct: 98 RIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGA--VFM 155
Query: 265 DAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQL 324
DAPVSGGV A G LT M G E+ + +L + + V G G G K+ N +
Sbjct: 156 DAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNV-VYCGAVGTGQAAKICNNM 214
Query: 325 LAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE--NRVPHMLD-----NDYT 377
L + + AEAM G RLGL+ ++L I+ S G W + N VP ++D N+Y
Sbjct: 215 LLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQ 274
Query: 378 PYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAV 429
+ KD+G+ S + P+ + ++AHQ++ A G+ ++D ++V
Sbjct: 275 GGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSV 326
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 988 | |||
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 0.0 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 1e-83 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 2e-80 | |
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 2e-47 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 1e-40 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 6e-39 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 5e-38 | |
| PRK15461 | 296 | PRK15461, PRK15461, NADH-dependent gamma-hydroxybu | 9e-34 | |
| COG3395 | 413 | COG3395, COG3395, Uncharacterized protein conserve | 1e-31 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 2e-25 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 3e-16 | |
| pfam01116 | 283 | pfam01116, F_bP_aldolase, Fructose-bisphosphate al | 1e-15 | |
| cd00947 | 276 | cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphospha | 6e-15 | |
| pfam07005 | 224 | pfam07005, DUF1537, Protein of unknown function, D | 3e-13 | |
| PRK12857 | 284 | PRK12857, PRK12857, fructose-1,6-bisphosphate aldo | 4e-13 | |
| PRK12737 | 284 | PRK12737, gatY, tagatose-bisphosphate aldolase; Re | 6e-11 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 6e-11 | |
| PRK09195 | 284 | PRK09195, gatY, tagatose-bisphosphate aldolase; Re | 9e-11 | |
| TIGR01859 | 282 | TIGR01859, fruc_bis_ald_, fructose-1,6-bisphosphat | 1e-10 | |
| COG0191 | 286 | COG0191, Fba, Fructose/tagatose bisphosphate aldol | 3e-10 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 2e-09 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 2e-09 | |
| PRK06806 | 281 | PRK06806, PRK06806, fructose-bisphosphate aldolase | 5e-09 | |
| TIGR00167 | 288 | TIGR00167, cbbA, ketose-bisphosphate aldolase | 7e-09 | |
| TIGR01858 | 282 | TIGR01858, tag_bisphos_ald, class II aldolase, tag | 1e-08 | |
| PRK07709 | 285 | PRK07709, PRK07709, fructose-bisphosphate aldolase | 5e-08 | |
| PRK07084 | 321 | PRK07084, PRK07084, fructose-bisphosphate aldolase | 1e-07 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 5e-07 | |
| PRK08185 | 283 | PRK08185, PRK08185, hypothetical protein; Provisio | 1e-06 | |
| PRK08610 | 286 | PRK08610, PRK08610, fructose-bisphosphate aldolase | 2e-06 | |
| PRK09196 | 347 | PRK09196, PRK09196, fructose-1,6-bisphosphate aldo | 2e-06 | |
| PRK06801 | 286 | PRK06801, PRK06801, hypothetical protein; Provisio | 5e-06 | |
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 7e-06 | |
| PRK12738 | 286 | PRK12738, kbaY, tagatose-bisphosphate aldolase; Re | 3e-05 | |
| PRK05835 | 307 | PRK05835, PRK05835, fructose-bisphosphate aldolase | 3e-05 | |
| PRK13399 | 347 | PRK13399, PRK13399, fructose-1,6-bisphosphate aldo | 3e-05 | |
| TIGR01521 | 347 | TIGR01521, FruBisAldo_II_B, fructose-bisphosphate | 0.001 | |
| PRK07315 | 293 | PRK07315, PRK07315, fructose-bisphosphate aldolase | 0.002 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 0.004 | |
| cd00453 | 340 | cd00453, FTBP_aldolase_II, Fructose/tagarose-bisph | 0.004 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 1714 bits (4440), Expect = 0.0
Identities = 778/986 (78%), Positives = 871/986 (88%), Gaps = 3/986 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDA-KL 59
MVN+LLEG+HL+AS EA++LGV+ GIHPW++YDIISNAAG+SWIFKN++P LL+ D +
Sbjct: 178 MVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEG 237
Query: 60 HFLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119
FLN +QNLGI LDMAK+L FPLPLLAVAHQQLI G S +D L KVWE V GV
Sbjct: 238 RFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKVFGV 297
Query: 120 NITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179
NI +AAN E YKPE+LAKQIT ++ V R+GFIGLGAMGFGMA+HLL+SNF+V GYDVY+
Sbjct: 298 NILEAANRELYKPEDLAKQITMQAKPVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYK 357
Query: 180 PTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILS 239
PTL +F+N GGL NSPAE AKDV VLVIMV NE QAE+VL+GDLGAVSAL +GASI+LS
Sbjct: 358 PTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLS 417
Query: 240 STVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLS 299
STVSPGFV QLERRL+ EG+D+KLVDAPVSGGVKRA+MG LTIMA+GT+E+LKS GSVLS
Sbjct: 418 STVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLS 477
Query: 300 ALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359
ALSEKLYVIKGGCGAGSGVKM NQLLAGVHIASAAEAMAFGARLGLNTR LF+II+++GG
Sbjct: 478 ALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGG 537
Query: 360 SSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419
+SWMFENRVPHMLDNDYTPYSALDIFVKD+GI++RE S+++PLH+ST+AHQLFLAGSA+
Sbjct: 538 TSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSAS 597
Query: 420 GWGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDI-KGLIKKNAK 478
GWGR DDAAVVKVYETL+GVKVEGRLPVLKKE VL SLP+EWP DPIDDI L N+K
Sbjct: 598 GWGRIDDAAVVKVYETLTGVKVEGRLPVLKKEDVLTSLPAEWPEDPIDDICHRLNMGNSK 657
Query: 479 TLIVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITD 538
TL+VLDDDPTGTQTVH +EVLTEWSV S+ EQFRKKP CFFILTNSR+LS EKAS LI D
Sbjct: 658 TLVVLDDDPTGTQTVHDVEVLTEWSVESISEQFRKKPACFFILTNSRSLSPEKASELIKD 717
Query: 539 ICRNLRTASNSVENTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRY 598
ICRNL A+ SV N +YT+VLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRY
Sbjct: 718 ICRNLCAAAKSVGNVDYTIVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRY 777
Query: 599 TIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISIQLL 658
TI DIHYV D D+LVPAG+TEFAKDASFG+KSSNLREWVEEKT GRI A+SV SISIQLL
Sbjct: 778 TINDIHYVADSDRLVPAGETEFAKDASFGYKSSNLREWVEEKTKGRISANSVQSISIQLL 837
Query: 659 RKGGPDAVCERLCSLQKGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSAR 718
RKGGPDAVCE LCSL+KGSTCIVNAASERD+AVFAAGMIQAELKGK FLCRTAASFVSAR
Sbjct: 838 RKGGPDAVCEHLCSLKKGSTCIVNAASERDMAVFAAGMIQAELKGKRFLCRTAASFVSAR 897
Query: 719 IGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVA 778
IGI+ K P+LPKDL + ES+GGLIVVGSYVPKTTKQVEEL SQ G+ +RS+EVSV+KVA
Sbjct: 898 IGIIPKPPVLPKDLESNKESSGGLIVVGSYVPKTTKQVEELKSQCGQSLRSIEVSVEKVA 957
Query: 779 MKSLEERQEEIIRAAEMVDVFLQARKDTLLITSRVLITGKTPSESLEINLKVSSAMVEIV 838
MKS E R EEI RA EM D FL+A KDTL++TSR LITGKTPSESL+IN KVSSA+VEIV
Sbjct: 958 MKSSEVRDEEISRAVEMADAFLRAGKDTLIMTSRELITGKTPSESLDINSKVSSALVEIV 1017
Query: 839 RRITTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAGVPLWELGPESRHPGVPYVVF 898
RRI+TRPRYILAKGGITSSD+ATKALEA+RAKVVGQALAGVPLW+LGPESRHPGVPY+VF
Sbjct: 1018 RRISTRPRYILAKGGITSSDLATKALEARRAKVVGQALAGVPLWKLGPESRHPGVPYIVF 1077
Query: 899 PGNVGDNNAVANVVRSWARPVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEE 958
PGNVGD+ A+A VV+SWARP R SSTKELLLNAEKG YAVGAFNVYN+EG+EAVVAAAE
Sbjct: 1078 PGNVGDSTALAEVVKSWARPAR-SSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEA 1136
Query: 959 ERSPAILQVRSTCFKVQYITLVTSSI 984
E+SPAILQV K I LV+ I
Sbjct: 1137 EKSPAILQVHPGALKQGGIPLVSCCI 1162
|
Length = 1378 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 295 bits (756), Expect = 1e-83
Identities = 115/299 (38%), Positives = 188/299 (62%)
Query: 143 SNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKD 202
+ S VGF+GL ++ F +A+ LLRS F V +++ P + KF +GG +SPAEAAKD
Sbjct: 1 AQSAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKD 60
Query: 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLK 262
LV+++++ Q + V +GD GA L GA I++ ST+ P + +LE++L + +
Sbjct: 61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF 120
Query: 263 LVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMAN 322
LVDA VS G+ G+L I+A+G +++ LSA+ +KLY +G GAGS VKM N
Sbjct: 121 LVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVN 180
Query: 323 QLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSAL 382
+LL G+H+ ++AEAMA G R G++ ++++II+++ GSSW+F+N VP +L +DY L
Sbjct: 181 ELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFL 240
Query: 383 DIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441
++ V+++GI+ S PL + +AHQ ++GS++ G ++ KV+E + GV +
Sbjct: 241 NVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKVFGVNI 299
|
Length = 1378 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 262 bits (673), Expect = 2e-80
Identities = 103/289 (35%), Positives = 162/289 (56%), Gaps = 4/289 (1%)
Query: 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR-PTLTKFQNVGGLIANSPAEAAKDVGV 205
++ FIGLG MG MA +LL++ V Y+ G +A SPAEAA + V
Sbjct: 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADV 60
Query: 206 LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD 265
++ M+ ++A +VL+G+ G + L GA +I ST+SP +L L K L+ +D
Sbjct: 61 VITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAAL--AAKGLEFLD 118
Query: 266 APVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLL 325
APVSGGV A+ G LTIM G E+ + VL A+ + + + G GAG K+AN +L
Sbjct: 119 APVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHV-GPVGAGQAAKLANNIL 177
Query: 326 AGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIF 385
+IA+ AEA+A + GL+ V+ +I+ SW+ EN P ML+ D++P A+D+
Sbjct: 178 LAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLM 237
Query: 386 VKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE 434
+KD+G+ PL ++ +A +L+ +AAG G +D +A++K+ E
Sbjct: 238 LKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286
|
Length = 286 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 2e-47
Identities = 92/290 (31%), Positives = 138/290 (47%), Gaps = 10/290 (3%)
Query: 151 FIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMV 210
FIGLG MG MA +LL++ V +D++ + + G A SPAEAA+ ++ M+
Sbjct: 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITML 60
Query: 211 TNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSG 270
SV GD G + ++ G+ +I ST+ P +L +DAPVSG
Sbjct: 61 PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAE--LAAAHGAVFMDAPVSG 118
Query: 271 GVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHI 330
GV A G LT M G E + VL + + V G GAG K+ N +L G+ +
Sbjct: 119 GVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNI-VHCGDHGAGQAAKICNNMLLGISM 177
Query: 331 ASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE--NRVPHMLD-----NDYTPYSALD 383
AEAMA G +LGL+ +VLF I S G W + N VP ++ N Y
Sbjct: 178 IGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTA 237
Query: 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433
+ +KD+G+ S P + +A QL+ G G +D ++V+++
Sbjct: 238 LMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 1e-40
Identities = 77/294 (26%), Positives = 141/294 (47%), Gaps = 3/294 (1%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
+VGFIGLG MG M+ +L ++ + + + + G + A + + + V+
Sbjct: 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIF 60
Query: 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267
MV + Q E V +G+ G + G +++ S++SP + + ++ +G D +DAP
Sbjct: 61 TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLDAP 118
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
VSGG A G L+IM G + + AL K V+ GG G G K+ANQ++
Sbjct: 119 VSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALG-KNIVLVGGNGDGQTCKVANQIIVA 177
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVK 387
++I + +EA+ F ++ G++ + + S + E + ++D + P +D+ K
Sbjct: 178 LNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQK 237
Query: 388 DMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441
D+ + + L + +LF A G G+ D +A+V+ E L+ KV
Sbjct: 238 DLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELLANHKV 291
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 6e-39
Identities = 79/294 (26%), Positives = 151/294 (51%), Gaps = 3/294 (1%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
+VGFIGLG MG M+ +LL++ ++++ YD + + G A++ A+ V++
Sbjct: 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVII 63
Query: 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267
M+ N + V G+ G + G +I S+++P S+ E + K ++++DAP
Sbjct: 64 TMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPL-ASR-EIAAALKAKGIEMLDAP 121
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
VSGG +A G L++M G + ++ A++ + V G GAG+ K+ANQ++
Sbjct: 122 VSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV-VHTGDIGAGNVTKLANQVIVA 180
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVK 387
++IA+ +EA+ + G+N +++ I S + + + P ++D ++ P +D+ +K
Sbjct: 181 LNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIK 240
Query: 388 DMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441
D+ PL ++ ++ A A G G D +A+ YE L+ V+V
Sbjct: 241 DLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKLAKVEV 294
|
Length = 296 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 5e-38
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 2/164 (1%)
Query: 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVL 206
++GFIGLG MG MA +LL++ +TV Y+ + + G + A SPAE V+
Sbjct: 1 AKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVV 60
Query: 207 VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266
+ MV A ++V+ G+ G + L G II ST P + + L K + +DA
Sbjct: 61 ITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKEL--AEKGIHFLDA 118
Query: 267 PVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKG 310
PVSGG + A G L+IM G EE+ + +L A+ + G
Sbjct: 119 PVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGACVTHYIG 162
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 9e-34
Identities = 86/293 (29%), Positives = 141/293 (48%), Gaps = 4/293 (1%)
Query: 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI 208
+ FIGLG MG MA++LL+ + +DV + + G A SPA+AA ++
Sbjct: 4 IAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVIT 63
Query: 209 MVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPV 268
M+ N SVL+G+ G LS A +I ST+ P +L +Q K ++D PV
Sbjct: 64 MLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQ--AKGFSMMDVPV 121
Query: 269 SGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGV 328
A G L ++A GT E ++ +L A+ +L + GG G G VK+ N ++
Sbjct: 122 GRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNEL-INAGGPGMGIRVKLINNYMSIA 180
Query: 329 HIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPH-MLDNDYTPYSALDIFVK 387
A +AEA LGL+ V +++ + F P+ +L D +P +D+ K
Sbjct: 181 LNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHK 240
Query: 388 DMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440
D+GI VP+ + + +++ AAG GRQD +A+++ +G+
Sbjct: 241 DLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSAGLT 293
|
Length = 296 |
| >gnl|CDD|225930 COG3395, COG3395, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-31
Identities = 100/444 (22%), Positives = 156/444 (35%), Gaps = 50/444 (11%)
Query: 480 LIVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLC-----FFILTNSRALSSEKASS 534
L V+ DD TG V V +++ L I SR+L +++A S
Sbjct: 3 LGVIADDLTGATDVASFLVKNGLRTVLVLDV-PTVRLFDEVDAVVIALKSRSLPADEAIS 61
Query: 535 LITDICRNLRTASNSVENTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQ 594
+ L+ A V Y V DSTLRG+ E DA + LG ++ P
Sbjct: 62 QVLAALSWLKEAGAQVH---YKVCSTFDSTLRGNIGPETDALLDALGF-SIAVVVPALPL 117
Query: 595 GGRYTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASIS 654
GR +V V ++ A+D K S L V ++T G+I +A +
Sbjct: 118 NGRTVFGGYLFVNG----VLVDESGMARDPVTPMKDSYLPRHVAKQTKGKIGLVDLADVR 173
Query: 655 IQLLRKGGPDAVCERLCSLQKGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASF 714
G DAV L LQ + + + + AE + +
Sbjct: 174 ------QGADAVRAALADLQAEGCRVAVVDAVDNRDLEILAKAAAEQP---LVTGASGLA 224
Query: 715 ----VSARIGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSV 770
A A P +V GS P T KQV+ L+ + F V
Sbjct: 225 TALARRWPQSAGAAAAGAPP-------KGRAAVVSGSVSPMTNKQVDALLQHAPVFELDV 277
Query: 771 EVSVDKVAMKSLEERQEEIIRAAEMVDVFLQARKDTLLITSR-VLITGKTPSE-SLEINL 828
E + L + + I RA V L + L+ TSR + + +
Sbjct: 278 E--------RLLSDAEAYIERAVAWVLASLSHGRAPLVYTSRGPDAIKAIQARLGVGQSH 329
Query: 829 KVSSAMVEIVRRITTRP-RYILAKGGITSSDIATKALEAKRAKVVGQALAGVPLWELGPE 887
V + + ++ RR+ R R ++ GG TS L A ++ G+ GVP
Sbjct: 330 AVEALLGDLARRLVARGVRRLIVAGGETSGA-VLGQLGATGFRIGGEIAPGVP-LVRAIG 387
Query: 888 SRHPGVPYVVFPGNVGDNNAVANV 911
+P + GN G + +A+
Sbjct: 388 R---DLPLALKSGNFGTEDTLADA 408
|
Length = 413 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 80/298 (26%), Positives = 145/298 (48%), Gaps = 12/298 (4%)
Query: 148 RVGFIGLGAMGFGMATHLLRS----NFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDV 203
++GFIGLG MG MA +L R+ + T IG P + ++G + + + +
Sbjct: 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIG-----PVADELLSLGAVSVETARQVTEAS 56
Query: 204 GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKL 263
++ IMV + Q E VL+G+ G A G +I+ S++SP + R++ G D
Sbjct: 57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDY-- 114
Query: 264 VDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQ 323
+DAPVSGG A G L+IM G E + + L + + ++ GG G G K+ANQ
Sbjct: 115 LDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV-GGNGDGQTCKVANQ 173
Query: 324 LLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALD 383
++ ++I + +EA+ F ++ G + + + SS + E M+ + P +
Sbjct: 174 IIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIA 233
Query: 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441
+ KD+ + + + + L + +LF +A G + D +A+V+ E ++ K+
Sbjct: 234 LHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHKL 291
|
Length = 292 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-16
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
+ N++L ++ A EA++L + G+ P V+ ++IS A SWI +NY P +L GD
Sbjct: 172 LANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPG 231
Query: 61 F-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWE 114
F ++ +++LG+ALD AK L PLPL A+A + + +D L+K+ E
Sbjct: 232 FAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286
|
Length = 286 |
| >gnl|CDD|216305 pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 1e-15
Identities = 27/45 (60%), Positives = 34/45 (75%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
S KELL A++G YAV AFNV N+E + AV+ AAEE +SP I+QV
Sbjct: 4 SLKELLDKAKEGGYAVPAFNVNNLETINAVLEAAEEAKSPVIIQV 48
|
Length = 283 |
| >gnl|CDD|238477 cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 6e-15
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 924 TKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
TKELL A +G YAVGAFN+ N+E ++A++ AAEE RSP ILQ+
Sbjct: 1 TKELLKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQI 44
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. Length = 276 |
| >gnl|CDD|219265 pfam07005, DUF1537, Protein of unknown function, DUF1537 | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 21/225 (9%)
Query: 650 VASISIQLLRKGGPDAVCERLCSLQKGST--CIVNAASERDIAVFAAGMIQAELKGKSFL 707
V + + +R+G +A+ L +L +V+A ++ D+ A + L
Sbjct: 6 VGLVDLADVRQG-AEALRAALAALLAQGVRIVVVDAETDADLDAIAEALADL---PGRVL 61
Query: 708 CRTAASFVSARIGIVAKAPILPKDLGNKIESTG-GLIVVGSYVPKTTKQVEELISQSGRF 766
++ +A +A + G L++ GS P T QV L++
Sbjct: 62 VVGSSGLAAALAAAWRRAGLAAARPAAPPPPAGPVLVLSGSCSPVTRAQVAALLAAG--- 118
Query: 767 IRSVEVSVDKVAMKSLEERQEEIIRAAEMVDVFLQARKDTLLITSR---VLITGKTPSES 823
++ + + + + EI RA L A L+ TS + + +
Sbjct: 119 APAIALDPAALL-----DGEAEIERALAWALAALAAGAVVLIYTSAGPEAVAAAQARLGA 173
Query: 824 LEINLKVSSAMVEIVRRITTR--PRYILAKGGITSSDIATKALEA 866
E + +A+ E+ R+ R ++ GG TS + +AL
Sbjct: 174 EEAGAAIEAALAELAARLVEAAGVRRLIVAGGDTSGAV-LQALGI 217
|
This conserved region is found in proteins of unknown function in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. Length = 224 |
| >gnl|CDD|237235 PRK12857, PRK12857, fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFK---VQYIT 978
+ ELL AEKG YAVGAFN NME V+A+VAAAE E+SP I+Q K ++YI+
Sbjct: 5 TVAELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYIS 63
|
Length = 284 |
| >gnl|CDD|183710 PRK12737, gatY, tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 920 RISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQ 966
I STK +L A+ YAV AFN++N+E ++ VV A E RSP IL
Sbjct: 2 YIISTKNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILA 48
|
Length = 284 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 6e-11
Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 11/177 (6%)
Query: 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVG---V 205
+G IGLG MG + LL V+GYDV + + + ++ G A S E + +
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRI 62
Query: 206 LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD 265
+ +MV ++V+ DL + LS+G +I + + L R K + +D
Sbjct: 63 VWLMVPAGDITDAVI-DDLAPL--LSAGDIVIDGGNSN--YKDSLRRAKLLAEKGIHFLD 117
Query: 266 APVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALS--EKLYVIKGGCGAGSGVKM 320
SGGV A G +M G EE+++ + AL+ E Y+ G G+G VKM
Sbjct: 118 VGTSGGVWGAERG-YCLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKM 173
|
Length = 300 |
| >gnl|CDD|181690 PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 9e-11
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFK 973
STK++L NA++G YAV AFN++N+E ++ VV A E SP I+ F
Sbjct: 5 STKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFS 55
|
Length = 284 |
| >gnl|CDD|130918 TIGR01859, fruc_bis_ald_, fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
+ KE+L A+K YAVGAFN N+E +A++ AAEEE SP I+QV
Sbjct: 3 NGKEILQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQV 47
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 282 |
| >gnl|CDD|223269 COG0191, Fba, Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
S KELL A++ YAV AFN+ N+E ++A++ AAEEE+SP I+Q
Sbjct: 5 SMKELLDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQF 49
|
Length = 286 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 2e-09
Identities = 52/183 (28%), Positives = 77/183 (42%), Gaps = 20/183 (10%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVG--- 204
++G IGLG MG MA LLR V+GYD + G A+S E +
Sbjct: 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPR 61
Query: 205 VLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPG----FVSQLERRLQFEGKD 260
V+ +MV ++ + +L + LS G +I G + + R K
Sbjct: 62 VVWLMVPAGEITDATI-DELAPL--LSPGDIVI------DGGNSYYKDDIRRAELLAEKG 112
Query: 261 LKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALS---EKLYVIKGGCGAGSG 317
+ VD SGGV G +M G +E+++ + AL+ E Y+ G GAG
Sbjct: 113 IHFVDVGTSGGVWGLERG-YCLMIGGDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHF 171
Query: 318 VKM 320
VKM
Sbjct: 172 VKM 174
|
Length = 301 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 50/178 (28%), Positives = 74/178 (41%), Gaps = 11/178 (6%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVG--- 204
++G IGLG MG MA L V+GYDV + + +G +S E +
Sbjct: 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPR 61
Query: 205 VLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264
+ +MV ESV+ DL + LS G ++ + + L R + + + V
Sbjct: 62 TIWVMVPAGEVTESVI-KDLYPL--LSPGDIVVDGG--NSRYKDDLRRAEELAERGIHYV 116
Query: 265 DAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALS--EKLYVIKGGCGAGSGVKM 320
D SGGV G +M G +E V AL+ YV G G+G +KM
Sbjct: 117 DCGTSGGVWGLRNG-YCLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKM 173
|
Length = 299 |
| >gnl|CDD|180705 PRK06806, PRK06806, fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 24/43 (55%), Positives = 28/43 (65%)
Query: 925 KELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
KELL A + Y VGAF+V NME V + AAEE SP ILQ+
Sbjct: 7 KELLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQI 49
|
Length = 281 |
| >gnl|CDD|232852 TIGR00167, cbbA, ketose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 7e-09
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
KELL +A++ YA+ AFN+ N+E + AV+ AA EE+SP I+Q
Sbjct: 5 DVKELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQF 49
|
This model is under revision. Proteins found by this model include fructose-bisphosphate and tagatose-bisphosphate aldolase [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 288 |
| >gnl|CDD|130917 TIGR01858, tag_bisphos_ald, class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAIL 965
I STK +L +A+ G YAV AFN++N+E ++AVV A E RSP IL
Sbjct: 1 IVSTKYMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVIL 45
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. Length = 282 |
| >gnl|CDD|169068 PRK07709, PRK07709, fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 5e-08
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
S KE+L A +G+YAVG FN+ N+E +A++AAAEEE+SP IL V
Sbjct: 5 SMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGV 49
|
Length = 285 |
| >gnl|CDD|180829 PRK07084, PRK07084, fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 924 TKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRS 969
T+E+ A KG YA+ A+N NME ++A++ A E +SP ILQV
Sbjct: 12 TREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSK 57
|
Length = 321 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 12/178 (6%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVG--- 204
++G IGLG MG + L + +GYD + + + + E ++ +
Sbjct: 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPR 61
Query: 205 VLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264
V+ +MV + L ++ I++ S S +L E K + L+
Sbjct: 62 VVWVMVPHGIVDAV-----LEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKE-KGIHLL 115
Query: 265 DAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLS--ALSEKLYVIKGGCGAGSGVKM 320
D SGGV G M G E+ + + A E+ Y+ G CG+G VKM
Sbjct: 116 DCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKM 172
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|181275 PRK08185, PRK08185, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 925 KELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
KELL A++ ++AVGAFNV + + AVV AE +PAI+ +
Sbjct: 2 KELLKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAI 44
|
Length = 283 |
| >gnl|CDD|181501 PRK08610, PRK08610, fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 20/45 (44%), Positives = 34/45 (75%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
S KE+L++A++ YAVG +N+ N+E +A++ A++EE +P IL V
Sbjct: 5 SMKEMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGV 49
|
Length = 286 |
| >gnl|CDD|181691 PRK09196, PRK09196, fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQ 966
S ++LL +A + Y V AFNV N+E V+A++ AA+E SP ILQ
Sbjct: 5 SLRQLLDHAAEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQ 48
|
Length = 347 |
| >gnl|CDD|180701 PRK06801, PRK06801, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITL 979
S L +A K YA+GAFNV + + A+ AAA++ERSP I+ + FK YI+L
Sbjct: 5 SLANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFK--YISL 59
|
Length = 286 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
Query: 3 NDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNY--IPNLLRG----- 55
N++L G+ +I + EA++LG + G+ P VL++I + ++G W Y +P ++
Sbjct: 169 NNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASN 228
Query: 56 DAKLHFLNAFI-QNLGIALDMAKTLAFPLPLLAVAHQ 91
+ F A + ++LG+A D AK+ P PL A+A Q
Sbjct: 229 GYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQ 265
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|183711 PRK12738, kbaY, tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 3e-05
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFK 973
I STK LL +A+ YAV AFN++N E ++A++ E RSP IL FK
Sbjct: 3 IISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFK 55
|
Length = 286 |
| >gnl|CDD|180280 PRK05835, PRK05835, fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 22/60 (36%), Positives = 27/60 (45%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982
E+LL A K Y VGAFN N E + A+ A EE SP +Q K I +
Sbjct: 4 KGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVG 63
|
Length = 307 |
| >gnl|CDD|184029 PRK13399, PRK13399, fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQ 966
+ ++LL +A + Y V AFNV NME + A++ AAE SP ILQ
Sbjct: 5 TLRQLLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQ 48
|
Length = 347 |
| >gnl|CDD|130584 TIGR01521, FruBisAldo_II_B, fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
S ++LL +A + Y V AFNV NME + A++ AA++ SP ILQ
Sbjct: 3 SMRQLLDHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQA 47
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. Length = 347 |
| >gnl|CDD|180926 PRK07315, PRK07315, fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQ 966
I S ++ + A YAVG FN N+E +A++ AAE +++P ++Q
Sbjct: 3 IVSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQ 48
|
Length = 293 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 12 IASV-EAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLHF-LNAFIQNL 69
IA++ EA+ L + G++P ++Y I S + P ++ + K F ++ I++L
Sbjct: 183 IAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 242
Query: 70 GIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNIT 122
ALD + + PLPL A + + + D+ L +E + V +T
Sbjct: 243 ANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKLAKVEVT 295
|
Length = 296 |
| >gnl|CDD|238255 cd00453, FTBP_aldolase_II, Fructose/tagarose-bisphosphate aldolase class II | Back alignment and domain information |
|---|
Score = 40.2 bits (93), Expect = 0.004
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 924 TKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQ 966
+++ A++ +A+ A N + + AV+ A + ++P I+Q
Sbjct: 1 VQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQ 43
|
This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin. Length = 340 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 988 | |||
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| COG3395 | 413 | Uncharacterized protein conserved in bacteria [Fun | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.98 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.98 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.97 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.97 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.97 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.97 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.96 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.96 | |
| PF07005 | 223 | DUF1537: Protein of unknown function, DUF1537; Int | 99.96 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.96 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.95 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.94 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.93 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.93 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.91 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.91 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.89 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.88 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.85 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.85 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.84 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.83 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.82 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.81 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.8 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.8 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.77 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.77 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.76 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.76 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.75 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.75 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.74 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.74 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.72 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.72 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.7 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.7 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.69 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.68 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.68 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.68 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.68 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.67 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.65 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.63 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.62 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.61 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.61 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.59 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.59 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.59 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.56 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.56 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 99.56 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.54 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.54 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.53 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.53 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.52 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.52 | |
| COG0191 | 286 | Fba Fructose/tagatose bisphosphate aldolase [Carbo | 99.51 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.51 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.49 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.47 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 99.47 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 99.47 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 99.46 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.46 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 99.46 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 99.44 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 99.44 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.44 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 99.44 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 99.43 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 99.43 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 99.43 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 99.42 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 99.41 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 99.41 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 99.41 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 99.4 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.39 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 99.38 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.38 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 99.37 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 99.37 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.36 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.36 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.36 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.34 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.33 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.32 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.31 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 99.28 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.27 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 99.27 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.27 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.25 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.23 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.22 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.21 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.2 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 99.19 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.19 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.19 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.18 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.18 | |
| TIGR01520 | 357 | FruBisAldo_II_A fructose-bisphosphate aldolase, cl | 99.17 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.17 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.16 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.16 | |
| PRK09197 | 350 | fructose-bisphosphate aldolase; Provisional | 99.14 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.12 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.11 | |
| cd00453 | 340 | FTBP_aldolase_II Fructose/tagarose-bisphosphate al | 99.1 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.09 | |
| cd00946 | 345 | FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis | 99.09 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.05 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.98 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 98.97 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.97 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.95 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.94 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.94 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.9 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.87 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.86 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.86 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 98.86 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.84 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 98.84 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.84 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.82 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.81 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.8 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 98.78 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.73 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 98.71 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.7 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.68 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.66 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.64 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.61 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.55 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.54 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.53 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.53 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.52 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.49 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.45 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 98.44 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.42 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.42 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.41 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.4 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.39 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.38 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.38 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.35 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.35 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.33 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.32 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.25 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.23 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.19 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.17 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.17 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.16 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.13 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 98.1 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.1 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 98.05 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.04 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.03 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.94 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.92 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.89 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.8 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.8 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.8 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.77 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 97.77 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.74 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 97.74 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.73 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.72 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.72 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.71 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.7 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.66 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.64 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.64 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.64 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.61 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.6 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.6 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.59 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.58 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.57 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.55 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.54 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.53 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.52 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 97.49 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.46 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.45 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.44 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.43 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.38 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.38 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.37 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.36 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 97.36 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.35 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.3 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.29 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.29 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.29 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 97.27 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.27 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.27 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.26 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.25 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.23 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.22 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.17 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 97.17 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.16 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.16 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.14 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.11 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.09 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.08 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.06 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.05 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.04 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.0 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 97.0 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.98 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.97 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.97 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.97 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.9 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.9 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.86 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.84 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 96.82 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 96.81 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.81 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.79 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 96.77 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 96.76 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.73 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.69 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.65 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 96.65 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.63 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.62 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.61 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 96.57 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.57 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.54 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.53 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.47 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.45 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.41 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 96.36 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.36 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.35 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.35 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 96.31 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 96.29 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.28 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 96.27 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 96.27 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.26 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.23 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 96.18 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.14 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.13 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.12 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.1 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.1 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.09 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.97 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 95.96 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.92 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 95.87 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.86 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 95.84 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.84 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.81 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 95.8 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 95.77 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 95.77 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 95.75 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 95.69 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 95.67 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.59 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.58 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 95.58 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.58 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.55 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.47 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 95.46 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.45 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.44 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.44 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.42 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.4 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.32 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 95.3 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.26 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 95.23 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 95.19 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 95.19 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 95.17 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.16 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.15 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.13 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 95.13 | |
| PLN00106 | 323 | malate dehydrogenase | 95.1 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 95.09 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 95.06 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.05 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 94.99 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 94.99 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 94.97 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 94.94 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.91 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 94.88 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.88 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 94.88 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 94.76 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 94.75 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 94.75 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 94.72 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 94.71 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 94.71 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 94.68 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.63 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.63 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 94.62 | |
| PF07479 | 149 | NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate | 94.56 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.53 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 94.51 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 94.43 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.42 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 94.32 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.14 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 94.12 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 94.12 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.09 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 93.98 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 93.97 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 93.97 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 93.94 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 93.93 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.92 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 93.89 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.88 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 93.88 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 93.74 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 93.71 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.69 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 93.67 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.63 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 93.61 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 93.61 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.58 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.5 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.48 | |
| PRK08223 | 287 | hypothetical protein; Validated | 93.44 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 93.43 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.41 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.37 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 93.33 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.32 | |
| KOG4153 | 358 | consensus Fructose 1,6-bisphosphate aldolase [Carb | 93.31 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 93.29 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 93.2 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 93.18 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 93.17 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.17 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 93.16 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 93.13 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 93.09 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 93.09 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 93.08 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 93.05 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 93.04 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 93.03 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 93.01 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 93.01 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.96 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 92.93 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 92.92 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.9 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 92.9 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.88 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 92.86 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 92.74 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 92.74 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 92.71 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 92.7 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 92.68 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.68 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 92.61 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 92.61 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 92.58 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 92.55 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.53 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.53 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 92.44 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 92.43 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 92.43 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.4 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 92.4 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 92.4 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 92.33 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 92.32 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 92.32 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 92.32 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 92.32 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 92.32 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 92.3 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 92.23 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 92.2 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.15 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 92.15 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 92.14 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 92.02 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 92.01 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 91.97 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.95 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 91.91 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.91 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 91.89 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 91.88 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 91.87 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 91.85 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 91.83 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 91.83 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 91.79 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 91.78 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 91.75 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 91.74 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.68 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 91.63 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 91.6 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 91.58 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 91.54 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 91.53 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 91.41 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 91.36 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 91.28 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 91.26 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 91.21 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 91.1 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 91.08 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 91.08 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.02 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 90.96 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 90.93 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.91 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 90.87 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.83 | |
| PLN02477 | 410 | glutamate dehydrogenase | 90.74 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 90.72 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 90.72 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 90.71 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 90.66 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 90.65 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 90.63 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.58 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 90.54 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 90.46 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 90.42 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 90.42 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 90.39 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.37 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 90.36 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.35 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 90.33 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.28 |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-167 Score=1589.00 Aligned_cols=983 Identities=79% Similarity=1.200 Sum_probs=916.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
|+||+++++++++++||+.||+++|||++.++++|+.|+++||+++++.++|++++|.| |++++++||+++++++|++.
T Consensus 178 L~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~KDl~la~~~A~~~ 257 (1378)
T PLN02858 178 MVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQNLGIVLDMAKSL 257 (1378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHHH
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGF 159 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG~ 159 (988)
|+++|+++++++.|+.+.+.|+|++|++++++++++..|....++.+.+-|.+++..+++.|..+..++|||||+|+||.
T Consensus 258 g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IGfIGlG~MG~ 337 (1378)
T PLN02858 258 PFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKVFGVNILEAANRELYKPEDLAKQITMQAKPVKRIGFIGLGAMGF 337 (1378)
T ss_pred CCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHcCCCccccccccccChHHHHHHhhccccCCCeEEEECchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988788999999999999
Q ss_pred HHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEec
Q 001973 160 GMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILS 239 (988)
Q Consensus 160 ~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~ 239 (988)
+||.+|+++||+|++|||++++.+.+.+.|+..++++.+++++||+||+|||++.++++++++..++.+.+.+|++|||+
T Consensus 338 ~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~ 417 (1378)
T PLN02858 338 GMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLS 417 (1378)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEEC
Confidence 99999999999999999999999999999988899999999999999999999999999998877888889999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHH
Q 001973 240 STVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVK 319 (988)
Q Consensus 240 st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~K 319 (988)
||++|.+++++++.+.+.++|++|+|+||+|++..+..|++++|+||+++.+++++++|+.++.++++++|++|+|+.+|
T Consensus 418 STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~K 497 (1378)
T PLN02858 418 STVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVK 497 (1378)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHH
Confidence 99999999999999987567899999999999999999999999999999999999999999999887678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhC
Q 001973 320 MANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQ 399 (988)
Q Consensus 320 l~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~ 399 (988)
+++|++.+.++.+++|++.++++.|+|+++++++++.+++.||++.++.++++.++|.++|+++.+.||++++.+++++.
T Consensus 498 L~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~ 577 (1378)
T PLN02858 498 MVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSR 577 (1378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchhhhhHhhhcc-Cc
Q 001973 400 RVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKN-AK 478 (988)
Q Consensus 400 gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 478 (988)
|+++|+..++.++|+.+.+.|+|++|++++++++++..|++++++.|++..++.|+.++++|+.++.+++......+ .+
T Consensus 578 g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~~~g~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1378)
T PLN02858 578 KIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYETLTGVKVEGRLPVLKKEDVLTSLPAEWPEDPIDDICHRLNMGNSK 657 (1378)
T ss_pred CCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCCCCCCCCCCcCcchhhccCCCcCccchhhhHHHhhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776663333 35
Q ss_pred EEEEecCCCCcccccccceeEeecChhhHHHhhccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 001973 479 TLIVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDICRNLRTASNSVENTEYTVV 558 (988)
Q Consensus 479 ~~~iiaDD~TGa~~~~g~~~~~~~~~~~~~~~~~~~~dvvvi~T~SR~l~~~~A~~~v~~~~~~l~~~~~~~~~~~~~i~ 558 (988)
+|+|+|||+||+|.++|+.+++.||++++...+.+..++++|+||||+++|++||++|++++++++.+..+....+|+||
T Consensus 658 ~~vvldddptg~qtv~~~~~l~~wd~~~l~~~~~~~~~v~~i~TnSRal~~~eA~~~v~ei~~~l~~a~~~~~~~~~~i~ 737 (1378)
T PLN02858 658 TLVVLDDDPTGTQTVHDVEVLTEWSVESISEQFRKKPACFFILTNSRSLSPEKASELIKDICRNLCAAAKSVGNVDYTIV 737 (1378)
T ss_pred eEEEECCCCCCCeeecccHhhhcCCHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcceEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999887544223456799
Q ss_pred eccCCCCCCCchhHHHHHHhhhCCCCEEEEeccccCCCeEEECcEEEEecCCceeecCCCccccCCCCCCCCCcHHHHHH
Q 001973 559 LRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVE 638 (988)
Q Consensus 559 kkiDSTLRGnig~Ei~a~~~~~~~~~~~~v~PAfP~~GR~t~~G~~~v~g~~~~~pl~et~~a~Dp~~Pv~~s~l~~~l~ 638 (988)
||+|||||||||+|++++++++|+++.++||||||++||||+||+|||||++.++|++||+||+||+||+++|+|++||+
T Consensus 738 kR~DSTLRGn~~~E~da~~~~~g~~d~~i~~PAFp~~GR~Tv~Gvhyv~~~~~~vPv~eTefA~Dp~~p~~~S~l~~~l~ 817 (1378)
T PLN02858 738 LRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTINDIHYVADSDRLVPAGETEFAKDASFGYKSSNLREWVE 817 (1378)
T ss_pred eccccccCCCCchhHHHHHHhhCcCcEEEEeccccCCCcEEECCEEEEccCCCcccccCCccccCCCCCCccccHHHHHH
Confidence 99999999999999999999999878999999999999999999999999889999999999999999999999999999
Q ss_pred hHcCCCCCCCceeEEehHHHhccChhHHHHHHhcccCCCeEEEecCChhHHHHHHHHHHHHHHcCCcEEEEcchHHHHHH
Q 001973 639 EKTSGRIPASSVASISIQLLRKGGPDAVCERLCSLQKGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSAR 718 (988)
Q Consensus 639 ~q~~~~~~~~~v~~i~l~~v~~~~~~~~~~~l~~~~~~~i~V~Da~t~~dL~~ia~a~~~~~~~~~~~l~vg~agl~~~L 718 (988)
+||++++++++|.+|++++||.++.+.+.++|..+.+++++||||+|++||+.||.++.+++..+++++|+|+|+|+.++
T Consensus 818 eqt~g~~~~~~V~~i~l~~lr~g~~~~~~~~L~~~~~~~~vVvDA~t~~DL~~ia~a~~~~~~~gk~~l~~~aA~~~~~~ 897 (1378)
T PLN02858 818 EKTKGRISANSVQSISIQLLRKGGPDAVCEHLCSLKKGSTCIVNAASERDMAVFAAGMIQAELKGKRFLCRTAASFVSAR 897 (1378)
T ss_pred HHcCCCCcccceeEEeHHHHhccCHHHHHHHHHhccCCCEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEECcHHHHHHH
Confidence 99999999999999999999997678899999877778899999999999999999997755568999999999999998
Q ss_pred hcccccCCCCccccccccCCCceEEEEeccccccHHHHHHHHhhcCCcEEEEEEehhHHHhhchHhHHHHHHHHHHHHHH
Q 001973 719 IGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMKSLEERQEEIIRAAEMVDV 798 (988)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~L~v~GS~s~~T~~Qi~~l~~~~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 798 (988)
......+|..|.........+|+|+||||++++|++|+++|+++.+..+..|++|++++++..++.++++++++++++.+
T Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~LvvvGS~~~~T~~Ql~~L~~~~~~~~~~i~v~v~~l~~~~~~~~~~~~~~~~~~~~~ 977 (1378)
T PLN02858 898 IGIIPKPPVLPKDLESNKESSGGLIVVGSYVPKTTKQVEELKSQCGQSLRSIEVSVEKVAMKSSEVRDEEISRAVEMADA 977 (1378)
T ss_pred hcCCCCCCCChHHhcccCCCCCEEEEEeCCcHhHHHHHHHHHhCcCCCeeEEEEeHHHHhhccchhHHHHHHHHHHHHHH
Confidence 65433344444444444456789999999999999999999987651146899999999853223456788999999999
Q ss_pred HHhcCCcEEEEecCcccccCCccchHHHHHHHHHHHHHHHHHhhcCcceeeeccccchHHHHHhhccccceEEecccccC
Q 001973 799 FLQARKDTLLITSRVLITGKTPSESLEINLKVSSAMVEIVRRITTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAG 878 (988)
Q Consensus 799 ~l~~~~~~vi~t~~~~~~~~~~~~~~~~~~~i~~~l~~i~~~~~~~~~~li~tGGdTs~~v~~~~Lg~~~~~~~~ei~pG 878 (988)
.+++|++++|+|++......+...+.+++.+|++.|+++++++..++++||+||||||.+++++.||++++++++||+||
T Consensus 978 ~l~~g~~~vv~Tsr~~~~~~~~~~~~~~~~~Is~~L~~iv~~l~~~~~~li~kGGdTs~~vl~~~L~~~~~~l~gei~pG 1057 (1378)
T PLN02858 978 FLRAGKDTLIMTSRELITGKTPSESLDINSKVSSALVEIVRRISTRPRYILAKGGITSSDLATKALEARRAKVVGQALAG 1057 (1378)
T ss_pred HHHcCCCEEEEeChhhccCCCHHHHHHHHHHHHHHHHHHHHhccccCCEEEeCCchhHHHHHHhhcCcceeeeecccccC
Confidence 99999999999998766566667789999999999999999998889999999999999997799999999999999999
Q ss_pred CcEEEcCCCCCCCCCcEEecCCCCCChhHHHHHHHHhccCcccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHH
Q 001973 879 VPLWELGPESRHPGVPYVVFPGNVGDNNAVANVVRSWARPVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEE 958 (988)
Q Consensus 879 vp~~~~~~~g~~~gl~ivtK~G~fG~~~~l~~~~~~l~~~~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~ 958 (988)
||++++.+++.++|+|||||+|+||++++|.+++++|.++-+ |||++||++|++++||||||||+|+|+++|+++|||+
T Consensus 1058 vp~~~~~~~~~~~glpvVtk~G~~G~~~tL~~~~~~l~~~~~-v~~~~~l~~A~~~~yav~afn~~n~e~~~avi~aAe~ 1136 (1378)
T PLN02858 1058 VPLWKLGPESRHPGVPYIVFPGNVGDSTALAEVVKSWARPAR-SSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEA 1136 (1378)
T ss_pred CceEEecCCCCCCCCcEEEeCCcCCChHHHHHHHHHhcCcCC-ccHHHHHHHHHHCCcEEEEEEeCCHHHHHHHHHHHHH
Confidence 999999645678999999999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccchhcccCHHHHHhhh
Q 001973 959 ERSPAILQVRSTCFKVQYITLVTSSI 984 (988)
Q Consensus 959 ~~~Pvil~~~~~~~~~~~~~~~~~~~ 984 (988)
+++|||||+++++++|.|.+++.+++
T Consensus 1137 ~~sPvIl~~~~~~~~~~~~~~~~~~~ 1162 (1378)
T PLN02858 1137 EKSPAILQVHPGALKQGGIPLVSCCI 1162 (1378)
T ss_pred hCCCEEEECCccHHhhcCHHHHHHHH
Confidence 99999999999999999988555544
|
|
| >COG3395 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-73 Score=619.99 Aligned_cols=400 Identities=25% Similarity=0.341 Sum_probs=351.2
Q ss_pred cEEEEecCCCCccccc------ccceeEeecChhhHHHhhccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHHhccccC
Q 001973 478 KTLIVLDDDPTGTQTV------HGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDICRNLRTASNSVE 551 (988)
Q Consensus 478 ~~~~iiaDD~TGa~~~------~g~~~~~~~~~~~~~~~~~~~~dvvvi~T~SR~l~~~~A~~~v~~~~~~l~~~~~~~~ 551 (988)
++++||||||||++++ .|+++.+.++.+... ...++|+++|+|+||++|++||++++.++++||+..+..
T Consensus 1 ~~l~viADD~TGatdvas~l~~~G~~t~~~~~v~~~~--~~~~~davvi~~~sRs~~~~eA~~~~~~A~~~Lk~~~~~-- 76 (413)
T COG3395 1 MKLGVIADDLTGATDVASFLVKNGLRTVLVLDVPTVR--LFDEVDAVVIALKSRSLPADEAISQVLAALSWLKEAGAQ-- 76 (413)
T ss_pred CceEEeecccccchHHHHHHHhcCCceeeeecCCccc--ccccCCEEEEecccccCCHHHHHHHHHHHHHHHHhcCcc--
Confidence 3699999999999998 788888888876433 557889999999999999999999999999999999854
Q ss_pred CCeEEEEeccCCCCCCCchhHHHHHHhhhCCCCEEEEeccccCCCeEEECcEEEEecCCceeecCCCccccCCCCCCCCC
Q 001973 552 NTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSS 631 (988)
Q Consensus 552 ~~~~~i~kkiDSTLRGnig~Ei~a~~~~~~~~~~~~v~PAfP~~GR~t~~G~~~v~g~~~~~pl~et~~a~Dp~~Pv~~s 631 (988)
++|+||||||||+|||||.|++|+++++| .++++||||||.+||||.+||+|||| +||+||+|.+||+|||++|
T Consensus 77 -~~~kvcstfDST~~GNIG~~~dal~~alg-~~~avv~PA~P~~gRtv~~gyl~v~G----vlv~es~~~~~PvtPm~~s 150 (413)
T COG3395 77 -VHYKVCSTFDSTLRGNIGPETDALLDALG-FSIAVVVPALPLNGRTVFGGYLFVNG----VLVDESGMARDPVTPMKDS 150 (413)
T ss_pred -ceEEEEecccCCCCCCccHHHHHHHHhcC-CCceEEecCccCCCeeEEeeEEEEcC----EEcccCccccCCCCccchh
Confidence 58999999999999999999999999999 58999999999999999999999999 9999999999999999999
Q ss_pred cHHHHHHhHcCCCCCCCceeEEehHHHhccChhHHHHHHhcccC--CCeEEEecCChhHHHHHHHHHHHHHHcCCcEEEE
Q 001973 632 NLREWVEEKTSGRIPASSVASISIQLLRKGGPDAVCERLCSLQK--GSTCIVNAASERDIAVFAAGMIQAELKGKSFLCR 709 (988)
Q Consensus 632 ~l~~~l~~q~~~~~~~~~v~~i~l~~v~~~~~~~~~~~l~~~~~--~~i~V~Da~t~~dL~~ia~a~~~~~~~~~~~l~v 709 (988)
||++++++|++++ ++++++.++++ +.+.+.++|.++.. .+++|+||.++.|++.++++.. ..+ |.+
T Consensus 151 ~l~r~v~~qt~~~-----~g~v~l~~~~~-g~~~~~~~L~~l~~~g~~~~v~da~~~~d~~~~~~~~a-----~~~-lv~ 218 (413)
T COG3395 151 YLPRHVAKQTKGK-----IGLVDLADVRQ-GADAVRAALADLQAEGCRVAVVDAVDNRDLEILAKAAA-----EQP-LVT 218 (413)
T ss_pred hHHHHHHHHhcCC-----cccccHHHHhh-hHHHHHHHHHHHHhcCCcEEeeecccchhHHHHHHHHh-----cCC-eee
Confidence 9999999999985 99999999999 67889999988754 3799999999999999999883 344 669
Q ss_pred cchHHHHHHhcccccCCCCccccccccCCCceEEEEeccccccHHHHHHHHhhcCCcEEEEEEehhHHHhhchHhHHHHH
Q 001973 710 TAASFVSARIGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMKSLEERQEEI 789 (988)
Q Consensus 710 g~agl~~~L~~~~~~~~~~~~~~~~~~~~~~~L~v~GS~s~~T~~Qi~~l~~~~~~~~~~i~~~~~~ll~~~~~~~~~~~ 789 (988)
|++|++.+|++.+..... ......++.+|++||+|||+++|.+|+++++++.. + .++|++++++ ..+.++
T Consensus 219 g~sGl~~aLa~~~~~~~~--~~~~~~P~~~~~~Vv~GS~s~~T~~Qv~~~~~~~~--~--~~ldv~~~~~----~~~~~i 288 (413)
T COG3395 219 GASGLATALARRWPQSAG--AAAAGAPPKGRAAVVSGSVSPMTNKQVDALLQHAP--V--FELDVERLLS----DAEAYI 288 (413)
T ss_pred cCchHHHHHHHHhccccc--cccccCCCCCceEEEEecccHHHHHHHHHHHHhCC--c--ccccHHHHhh----hhHHHH
Confidence 999999999876543311 11122344789999999999999999999998844 3 4999999984 257899
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCcccc--c-CCccchHHHHHHHHHHHHHHHHHhhc-CcceeeeccccchHHHHHhhcc
Q 001973 790 IRAAEMVDVFLQARKDTLLITSRVLIT--G-KTPSESLEINLKVSSAMVEIVRRITT-RPRYILAKGGITSSDIATKALE 865 (988)
Q Consensus 790 ~~~~~~~~~~l~~~~~~vi~t~~~~~~--~-~~~~~~~~~~~~i~~~l~~i~~~~~~-~~~~li~tGGdTs~~v~~~~Lg 865 (988)
+++.+|+.+.+.+++.++|||+..... . ....+..+ +.+|++.|+++++++++ .++++|++|||||++|+ .+||
T Consensus 289 e~~~~~v~a~~~~~~~~lvyts~~~~~~k~iq~~~g~~~-~~~v~~~l~~la~~l~~~~v~~livaGGeTS~~Vl-~~Lg 366 (413)
T COG3395 289 ERAVAWVLASLSHGRAPLVYTSRGPDAIKAIQARLGVGQ-SHAVEALLGDLARRLVARGVRRLIVAGGETSGAVL-GQLG 366 (413)
T ss_pred HHHHHHHHhhcccCCceeEEecCChHHHHHHHhhcCcch-HHHHHHHHHHHHHHHHHhhhceEEecCCcchHHHH-HhhC
Confidence 999999999999999999999986432 1 12233455 89999999999999998 69999999999999997 7899
Q ss_pred ccceEEecccccCCcEEEcCCCCCCCCCcEEecCCCCCChhHHHHHHHHh
Q 001973 866 AKRAKVVGQALAGVPLWELGPESRHPGVPYVVFPGNVGDNNAVANVVRSW 915 (988)
Q Consensus 866 ~~~~~~~~ei~pGvp~~~~~~~g~~~gl~ivtK~G~fG~~~~l~~~~~~l 915 (988)
+.++++.+||.||+||++.. ++ +|++++|+||||+|++|..+.+++
T Consensus 367 ~~~~ri~~~i~Pg~p~~~a~-g~---~l~l~lKsGnfG~e~~~~~a~~~~ 412 (413)
T COG3395 367 ATGFRIGGEIAPGVPLVRAI-GR---DLPLALKSGNFGTEDTLADALDML 412 (413)
T ss_pred cceEeecCCcCCCCceEeec-CC---CceEEEeCCCCCChhHHHHHHHhh
Confidence 99999999999999999987 32 399999999999999999999876
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-52 Score=441.99 Aligned_cols=285 Identities=36% Similarity=0.610 Sum_probs=277.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH-HHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT-LTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+||+|||+|.||.+||.+|.++||+|++|||++++ .+.+.+.|+..+.++.|+++++|+||+|||++.++++|++++++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 48999999999999999999999999999999999 67777779999999999999999999999999999999999999
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeE
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL 305 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v 305 (988)
+.+.+++|++|||+||++|..++++++.+.+ +|.+|+|+||+|++..+..|++++|+||+++.|++++|+|+.+|+++
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~--~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i 158 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAA--KGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNI 158 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHh--cCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCce
Confidence 9999999999999999999999999999988 68999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHH
Q 001973 306 YVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIF 385 (988)
Q Consensus 306 ~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~ 385 (988)
++ +|+.|+++.+|++||++.+.++.+++|++.++++.|+|++.+.++++.+++.||.++++.+++++++|.|+|+++.+
T Consensus 159 ~~-~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~ 237 (286)
T COG2084 159 VH-VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLM 237 (286)
T ss_pred EE-ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHH
Confidence 99 58889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 001973 386 VKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE 434 (988)
Q Consensus 386 ~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~ 434 (988)
.||++++.+++++.|+++|+...+.++|+.+.+.|+|++|++++++.++
T Consensus 238 ~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 238 LKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998874
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=417.23 Aligned_cols=291 Identities=38% Similarity=0.635 Sum_probs=283.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|+||.+|+.+|.++||.|++|||+.++.++|.+.|+.++++|.|+++.||+||+|||++.++++++++..+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~G 114 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSG 114 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCEE-EecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCe
Q 001973 226 AVSALSSGASI-ILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEK 304 (988)
Q Consensus 226 i~~~l~~g~iv-Id~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~ 304 (988)
+++.++++... ||+||++|++++++++.+.. ++..|+|+||+|+...+++|+|++|+|||++.+++..++|+.+|++
T Consensus 115 vl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~--~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 115 VLSGIRPGKKATVDMSTIDPDTSLEIAKAISN--KGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKN 192 (327)
T ss_pred ceeeccCCCceEEeccccCHHHHHHHHHHHHh--CCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcce
Confidence 99999998777 99999999999999999987 6899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhH
Q 001973 305 LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDI 384 (988)
Q Consensus 305 v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~ 384 (988)
+++ +|..|.++.+|+++|++.+..+.+++|++.|+++.|+|+.+++++++.+.+.|+++.++.|++..++|.|+|.++.
T Consensus 193 ~~~-~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~ 271 (327)
T KOG0409|consen 193 VVF-LGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKL 271 (327)
T ss_pred EEE-ecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHH
Confidence 988 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCc
Q 001973 385 FVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGV 439 (988)
Q Consensus 385 ~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~ 439 (988)
+.||++++.+.+.+.+.|+|+...++++|+...+.|+|+.|++++++.++...+.
T Consensus 272 m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 272 MVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred HHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999987664
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-45 Score=399.52 Aligned_cols=291 Identities=25% Similarity=0.419 Sum_probs=276.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
|||||||+|+||.+||++|.++||+|++|||++. .+.+.+.|+..++++.++++++|+||+|||++.+++++++++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 4899999999999999999999999999999985 577778898888999999999999999999999999999877778
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
.+.+.+|++|||+||++|.+++++++.+.+ +|+.|+|+||+|++..+..|++.+++||+++.+++++|+|+.++++++
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~--~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~ 157 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNE--LGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNIT 157 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcE
Confidence 888889999999999999999999999987 688999999999999999999999999999999999999999999998
Q ss_pred EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHH
Q 001973 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFV 386 (988)
Q Consensus 307 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~ 386 (988)
++ |+.|+++.+|+++|++...++.+++|++.++++.|+|++++++++..+.+.||+++++.+++.+++|.++|+++.+.
T Consensus 158 ~~-G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~ 236 (292)
T PRK15059 158 LV-GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQ 236 (292)
T ss_pred Ee-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHH
Confidence 84 88999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCccc
Q 001973 387 KDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441 (988)
Q Consensus 387 kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~~ 441 (988)
||++++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++..|.++
T Consensus 237 KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~~~~~ 291 (292)
T PRK15059 237 KDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHKL 291 (292)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhcCCcC
Confidence 9999999999999999999999999999999999999999999999998777553
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=391.63 Aligned_cols=290 Identities=30% Similarity=0.454 Sum_probs=274.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
+||+|||+|.||.+||.+|+++||+|++|||++++.+++.+.|+..++++.++++++|+||+|+|++.+++.++++.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 48999999999999999999999999999999999999999999889999999999999999999998899999877778
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
.+.+++++++||+||+.|.+++++++.+.+ +|+.|+|+||+|++..+..|++++++||+++.+++++++|+.++.+++
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~--~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~ 159 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQA--KGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELI 159 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeE
Confidence 888899999999999999999999999987 679999999999999999999999999999999999999999999998
Q ss_pred EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccc-cccCCCCCCCchhhHH
Q 001973 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVP-HMLDNDYTPYSALDIF 385 (988)
Q Consensus 307 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-~~~~~~~~~~~~l~~~ 385 (988)
+ +|+.|+++.+|+++|++...++.+++|++.++++.|+|++.+++++..+...++.+..+.+ ++..++|.++|+++.+
T Consensus 160 ~-~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 238 (296)
T PRK15461 160 N-AGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLA 238 (296)
T ss_pred e-eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHH
Confidence 8 6899999999999999999999999999999999999999999999988777777766655 7889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCc
Q 001973 386 VKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGV 439 (988)
Q Consensus 386 ~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~ 439 (988)
.||++++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++..|+
T Consensus 239 ~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 292 (296)
T PRK15461 239 HKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSAGL 292 (296)
T ss_pred HhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999887765
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=440.48 Aligned_cols=296 Identities=39% Similarity=0.691 Sum_probs=285.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||.+||.+|+++||+|++|||++++.+++.+.|+..++|+.|++++||+||+|||++.++++|++++++
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g 83 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEG 83 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeE
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL 305 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v 305 (988)
+.+.+.+|++|||+||+.|.+++++++.+.+++.++.|+|+||+|++..+..|++++|+||+++.+++++++|+.+|+++
T Consensus 84 ~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i 163 (1378)
T PLN02858 84 AAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKL 163 (1378)
T ss_pred HHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCce
Confidence 99999999999999999999999999999884333899999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHH
Q 001973 306 YVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIF 385 (988)
Q Consensus 306 ~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~ 385 (988)
++++|+.|+|+.+|+++|++.+.++.+++|++.++++.|+|++.++++++.+++.||++.++.++++.++|.++|+++.+
T Consensus 164 ~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~ 243 (1378)
T PLN02858 164 YTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVL 243 (1378)
T ss_pred EEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHH
Confidence 87679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCccc
Q 001973 386 VKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441 (988)
Q Consensus 386 ~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~~ 441 (988)
.||++++.+++++.|+++|+...+.++|+.+.+.|+|++|++++++++++.+|++.
T Consensus 244 ~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~~~g~~~ 299 (1378)
T PLN02858 244 VQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKVFGVNI 299 (1378)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999888753
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=373.60 Aligned_cols=280 Identities=32% Similarity=0.513 Sum_probs=265.1
Q ss_pred EEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhC
Q 001973 151 FIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSAL 230 (988)
Q Consensus 151 iIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l 230 (988)
|||+|.||.+||++|+++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|||++.+++.++++++++.+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999999999999999998899999999999999999999999999998877888889
Q ss_pred CCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeC
Q 001973 231 SSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKG 310 (988)
Q Consensus 231 ~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g 310 (988)
.+++++||+||+.|.+++++++.+.+ +|++|+|+||+|++..+..|++.+|+||+++.+++++++|+.+++++++ +|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~--~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~-~g 157 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAA--HGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVH-CG 157 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHH--cCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEe-eC
Confidence 99999999999999999999999987 6899999999999999999999999999999999999999999999988 58
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccc-------cccCCCCCCCchhh
Q 001973 311 GCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVP-------HMLDNDYTPYSALD 383 (988)
Q Consensus 311 ~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~~~l~ 383 (988)
+.|.++.+|+++|++.+.++.+++|++.++++.|+|++++.+++..+++.||.+..+.+ .+..++|.++|+++
T Consensus 158 ~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 237 (288)
T TIGR01692 158 DHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTA 237 (288)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchH
Confidence 89999999999999999999999999999999999999999999999999998776554 23668999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 001973 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433 (988)
Q Consensus 384 ~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~ 433 (988)
.+.||++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++++
T Consensus 238 ~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 238 LMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred HHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999875
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=368.14 Aligned_cols=291 Identities=26% Similarity=0.482 Sum_probs=276.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
|||||||+|.||..+|.+|+++|++|++|||++++.+++.+.|...++++.+++++||+||+|+|++..++.++++.+++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 58999999999999999999999999999999999999998898888999999999999999999999999998766678
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
.+.++++++|||+||+.|.+++++.+.+.+ ++++|+++|+++++..+..+++.+++||+++.+++++++|+.++.+++
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~--~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~ 160 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKA--KGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV 160 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHH--cCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeE
Confidence 888899999999999999999999999987 578999999999999999999999999999999999999999999998
Q ss_pred EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHH
Q 001973 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFV 386 (988)
Q Consensus 307 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~ 386 (988)
+ +|+.|+|+.+|+++|++.+.++.+++|++.+|++.|+|++++.+++..+.+.|+.++.+.+++..++|.++|+++.+.
T Consensus 161 ~-~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~ 239 (296)
T PRK11559 161 H-TGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHI 239 (296)
T ss_pred E-eCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHH
Confidence 8 588999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 387 KDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 387 kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
||++++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++..|++
T Consensus 240 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~ 293 (296)
T PRK11559 240 KDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKLAKVE 293 (296)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999877753
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=366.02 Aligned_cols=290 Identities=25% Similarity=0.433 Sum_probs=274.9
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAV 227 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~ 227 (988)
||||||+|.||.+||.+|+++||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|++..++.++++..++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 59999999999999999999999999999999999999999988888999999999999999999988999987666677
Q ss_pred hhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEE
Q 001973 228 SALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYV 307 (988)
Q Consensus 228 ~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~ 307 (988)
+.++++++|||+||..|.+++++.+.+.+ ++++|+++|++|++..+..+++.+++||+++.+++++++|+.+++++++
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~--~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~ 158 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKE--KGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVL 158 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEE
Confidence 78889999999999999999999999987 5899999999999999999999999999999999999999999999988
Q ss_pred EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHH
Q 001973 308 IKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVK 387 (988)
Q Consensus 308 ~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~k 387 (988)
.|+.|.++.+|+++|++...++.+++|++.++++.|+|++++.+++..+.+.|+++..+.+++.+++|.++|+++++.|
T Consensus 159 -~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~K 237 (291)
T TIGR01505 159 -VGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQK 237 (291)
T ss_pred -eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHH
Confidence 4778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 388 DMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 388 Dl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
|++++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++..|.+
T Consensus 238 Dl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~~~~~ 290 (291)
T TIGR01505 238 DLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELLANHK 290 (291)
T ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999877654
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=355.62 Aligned_cols=268 Identities=19% Similarity=0.233 Sum_probs=245.5
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc----CCc---ccCCHHHHhcc---CcEEEEEcCCh
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV----GGL---IANSPAEAAKD---VGVLVIMVTNE 213 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----G~~---~~~s~~e~~~~---aDvV~l~vp~~ 213 (988)
.++++|||||+|.||.+||.+|+++||+|++|||++++++.+.+. |+. .+++++|+++. +|+||+|||++
T Consensus 4 ~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~ 83 (493)
T PLN02350 4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAG 83 (493)
T ss_pred CCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence 345789999999999999999999999999999999999998874 543 67899999986 99999999999
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHH
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKS 293 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~ 293 (988)
.++++|+ +++.+.+.+|++|||+||+.|.+++++++.+.+ +|++|+++||+|++..+..|+ ++|+||+++++++
T Consensus 84 ~aV~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~--~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~ 157 (493)
T PLN02350 84 APVDQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAE--KGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKN 157 (493)
T ss_pred HHHHHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHH
Confidence 9999999 678999999999999999999999999999987 689999999999999999999 9999999999999
Q ss_pred HHHHHHhcCCe------EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HHhcCCCccc
Q 001973 294 TGSVLSALSEK------LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLFNI---ITDSGGSSWM 363 (988)
Q Consensus 294 ~~~ll~~~g~~------v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~~~---l~~~~~~s~~ 363 (988)
++|+|+.++.+ ++| +|+.|+|+.+|+++|.+.+.++++++|++.++++ .|+|++++.++ ++.+...|+.
T Consensus 158 v~pvL~~ia~k~~~~~~v~~-vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~l 236 (493)
T PLN02350 158 IEDILEKVAAQVDDGPCVTY-IGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFL 236 (493)
T ss_pred HHHHHHHHhhhcCCCCcEEE-eCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchH
Confidence 99999999954 777 5899999999999999999999999999999999 59999999998 5677889999
Q ss_pred cccccccccCCC-CCCCchhhHHHHHHH------HHHHHHHhCCCCchH-HHHHHHHHHHHHH
Q 001973 364 FENRVPHMLDND-YTPYSALDIFVKDMG------IIARECLSQRVPLHI-STIAHQLFLAGSA 418 (988)
Q Consensus 364 ~~~~~~~~~~~~-~~~~~~l~~~~kDl~------~~~~~a~~~gi~~pi-~~a~~~~~~~a~~ 418 (988)
++...+.+..++ |.++|.++.+.||++ +..+.+.+.|+|+|+ ..++...+....+
T Consensus 237 lei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 237 IEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred HHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 998888877664 888899999999999 999999999999999 7777777776654
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=339.06 Aligned_cols=279 Identities=20% Similarity=0.263 Sum_probs=256.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhcc---CcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKD---VGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~---aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|+|||||+|.||.+||.+|.++|++|++|||++++.+.+.+.|+..++++++++++ +|+||+|+|++..+++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~--- 77 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI--- 77 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence 48999999999999999999999999999999999999998899889999998876 699999999998899998
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSE 303 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~ 303 (988)
+++.+.+++|++|||+||+.|.+++++++.+.+ +|++|+|+||+|++..+..|+ ++++||+++.+++++++|+.++.
T Consensus 78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~--~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE--RGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAP 154 (299)
T ss_pred HHHhccCCCCCEEEECCCCCchhHHHHHHHHHH--cCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcC
Confidence 577888889999999999999999999999887 579999999999999999998 89999999999999999999997
Q ss_pred ---eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcC-CCccccccccccccCCCCC
Q 001973 304 ---KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLG--LNTRVLFNIITDSG-GSSWMFENRVPHMLDNDYT 377 (988)
Q Consensus 304 ---~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~G--id~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~ 377 (988)
+++| +|++|.++.+|+++|++...++.+++|++.++++.| +|+++++++++.+. +.|++++.+.+.+..+++
T Consensus 155 ~~~~~~~-~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~- 232 (299)
T PRK12490 155 EGPGYVH-AGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK- 232 (299)
T ss_pred cCCcEEE-ECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC-
Confidence 6777 589999999999999999999999999999999999 99999999999654 889999888887766543
Q ss_pred CCchhhHHHHHH---HHHHHHHHhCCCCchHHHHHH-HHHHHHHHcCCCCCChHHHHHHHH
Q 001973 378 PYSALDIFVKDM---GIIARECLSQRVPLHISTIAH-QLFLAGSAAGWGRQDDAAVVKVYE 434 (988)
Q Consensus 378 ~~~~l~~~~kDl---~~~~~~a~~~gi~~pi~~a~~-~~~~~a~~~g~g~~d~~a~~~~~~ 434 (988)
.+.++.+.||+ +++++.+++.|+|+|++..+. .++....+.|.|..|.+++.+.+-
T Consensus 233 -~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 233 -LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred -hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 36789999998 799999999999999999995 899999999999999999887653
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=319.74 Aligned_cols=277 Identities=23% Similarity=0.291 Sum_probs=248.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhcc---CcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKD---VGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~---aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|||||||+|.||.+||++|+++||+|++|||++++.+.+.+.|+..++++.++++. +|+||+|+|++..+++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~--- 77 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI--- 77 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence 48999999999999999999999999999999999999999999999999998876 699999999987888888
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSE 303 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~ 303 (988)
+++.+.+.+++++||+||+.|.+++++++.+.+ +|++|+|+||+|++..+..|. ++|+||+++.+++++++|+.++.
T Consensus 78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~--~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE--KGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAP 154 (301)
T ss_pred HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH--cCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcc
Confidence 577888899999999999999999999999887 689999999999999999996 89999999999999999999998
Q ss_pred ----eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHhcC-CCccccccccccccCCCC
Q 001973 304 ----KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR--LGLNTRVLFNIITDSG-GSSWMFENRVPHMLDNDY 376 (988)
Q Consensus 304 ----~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~--~Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~ 376 (988)
++++ +|+.|+++.+|+++|++...++.+++|++.++++ .|+|+++++++++.+. ..|++++.+.+.+..+
T Consensus 155 ~~~~~~~~-~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~-- 231 (301)
T PRK09599 155 RAEDGYLH-AGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAED-- 231 (301)
T ss_pred cccCCeEe-ECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcC--
Confidence 7887 5899999999999999999999999999999999 9999999999999875 6889888887766443
Q ss_pred CCCch-hhHHHHH---HHHHHHHHHhCCCCchHHHHHHH-HHHHHHHcCCCCCChHHHHHHH
Q 001973 377 TPYSA-LDIFVKD---MGIIARECLSQRVPLHISTIAHQ-LFLAGSAAGWGRQDDAAVVKVY 433 (988)
Q Consensus 377 ~~~~~-l~~~~kD---l~~~~~~a~~~gi~~pi~~a~~~-~~~~a~~~g~g~~d~~a~~~~~ 433 (988)
+.|. +..+.|| ++++.+.+.+.|+++|.+.++.. .+....+.|++..|.+++.+++
T Consensus 232 -~~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 232 -PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred -CCHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhc
Confidence 2232 3344555 58999999999999999999544 5888889999999999988764
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=314.64 Aligned_cols=288 Identities=20% Similarity=0.227 Sum_probs=245.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-------------------cC-CcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-------------------VG-GLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-------------------~G-~~~~~s~~e~~~~aDvV 206 (988)
|||+|||+|+||.++|.+|+++||+|++||+++++++.+++ .| ++.++++.++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 48999999999999999999999999999999999988774 23 45677888999999999
Q ss_pred EEEcCChHH---------HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCce-EecCcccCCccccc
Q 001973 207 VIMVTNEAQ---------AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLK-LVDAPVSGGVKRAS 276 (988)
Q Consensus 207 ~l~vp~~~~---------~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~-~ldapv~g~~~~a~ 276 (988)
|+|||++.. +..++ +++.+.++++++||++||+.|++++++.+.+.+...|.. +.++|+.++|.++.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 999999853 55555 678888899999999999999999999766654312333 56788999999999
Q ss_pred CCCe--------EEEEeCCHHHHHHHHHHHHhcC-CeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 001973 277 MGEL--------TIMAAGTEESLKSTGSVLSALS-EKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNT 347 (988)
Q Consensus 277 ~g~l--------~~~~gg~~~~~~~~~~ll~~~g-~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~ 347 (988)
.|.+ .+++|++++.+++++++|+.++ ..+++ .++++.++.+|+++|++.+.++++++|+..+|++.|+|+
T Consensus 158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~ 236 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVL-VTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDV 236 (411)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEE-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 8887 7899999999999999999998 56666 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccccccccccCCCCCCC--chhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCC
Q 001973 348 RVLFNIITDSGGSSWMFENRVPHMLDNDYTPY--SALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQD 425 (988)
Q Consensus 348 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~--~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d 425 (988)
+++.++++.+ +++..++|.|+ |...++.||+.++.+.+++.|+++|+++++.++++...+.
T Consensus 237 ~~v~~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~~~~------ 299 (411)
T TIGR03026 237 YEVIEAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQPDY------ 299 (411)
T ss_pred HHHHHHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHhHHH------
Confidence 9999988753 23444556665 4678899999999999999999999999999999998887
Q ss_pred hHHHHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 426 DAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 426 ~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+++.+.+..+ ++.| ++...||..||++++|
T Consensus 300 ---~~~~~~~~l~-~~~~--------~~v~vlGlafK~~t~d 329 (411)
T TIGR03026 300 ---VVEKILDLLG-PLKG--------KTVLILGLAFKPNTDD 329 (411)
T ss_pred ---HHHHHHHHhh-cccC--------CEEEEEeeEecCCCCc
Confidence 7777776653 4555 6677888888888888
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-31 Score=290.57 Aligned_cols=282 Identities=17% Similarity=0.182 Sum_probs=242.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHh---ccCcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAA---KDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~---~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|||||||+|.||.+||.+|+++||+|++|||++++++.+.+.|.....++.++. ..+|+||+|+|+. .+++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~--- 76 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL--- 76 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence 489999999999999999999999999999999999999998887778887755 4689999999998 799998
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSE 303 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~ 303 (988)
+++.+.+++|++|||+||+.|..+.++.+.+.+ +|++|+++|++|++..+..| +.+++||+++.+++++++|+.++.
T Consensus 77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~--~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKE--KGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAP 153 (298)
T ss_pred HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHh--cCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcC
Confidence 688889999999999999999999999998877 68999999999999999999 589999999999999999999986
Q ss_pred ---eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHhcC-CCccccccccccccCCCCC
Q 001973 304 ---KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARL--GLNTRVLFNIITDSG-GSSWMFENRVPHMLDNDYT 377 (988)
Q Consensus 304 ---~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~--Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~ 377 (988)
++++ +|+.|+++.+|+++|.+...++..++|++.++++. |+|++++.++++.+. ..|++++...+.+..+++.
T Consensus 154 ~~~~~~~-~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~ 232 (298)
T TIGR00872 154 EEQGYLY-CGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDL 232 (298)
T ss_pred cCCCEEE-ECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcH
Confidence 4677 58999999999999999999999999999999998 579999999999886 6899988887777776665
Q ss_pred CCchhh-HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCc
Q 001973 378 PYSALD-IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGV 439 (988)
Q Consensus 378 ~~~~l~-~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~ 439 (988)
+.|... ...+|.++++..+.+.|+|+|.+.+.. +.+..... .+.--..+++.++...|.
T Consensus 233 ~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al--~~~~~~~~-~~~~~~~~~~~~r~~fg~ 292 (298)
T TIGR00872 233 AEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSL--QSRFASRD-LDDFANKVLAALRKEFGG 292 (298)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHH--HHHHHhCC-CCCcHHHHHHHHHHhhCC
Confidence 556544 466888999999999999999998843 33332221 112245577777776653
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-31 Score=303.42 Aligned_cols=256 Identities=18% Similarity=0.224 Sum_probs=221.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc----C--CcccCCHHHHhc---cCcEEEEEcCChHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV----G--GLIANSPAEAAK---DVGVLVIMVTNEAQAE 217 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----G--~~~~~s~~e~~~---~aDvV~l~vp~~~~~~ 217 (988)
.+|||||+|.||++||.+|+++||+|++|||++++++++.+. | +..+++++|+++ .+|+||+|||++..++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 489999999999999999999999999999999999998864 5 346889999986 4899999999999999
Q ss_pred HHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHH
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSV 297 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 297 (988)
+++ +++.+.+.+|++|||+||+.|..+.+..+.+.+ +|++|+++||+|++..+..|. ++|+||+++++++++|+
T Consensus 82 ~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~pi 155 (470)
T PTZ00142 82 ETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDI 155 (470)
T ss_pred HHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHH
Confidence 999 688999999999999999999999999999987 689999999999999999999 89999999999999999
Q ss_pred HHhcCCe------EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCccccccc
Q 001973 298 LSALSEK------LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGA-RLGLNTRVLFNII---TDSGGSSWMFENR 367 (988)
Q Consensus 298 l~~~g~~------v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~-~~Gid~~~~~~~l---~~~~~~s~~~~~~ 367 (988)
|+.++.+ +++ +|+.|+|+.+||++|.+.+.++++++|++.+++ +.|++++++.+++ +.+...||+++..
T Consensus 156 L~~ia~~~~~~~~~~~-~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~ 234 (470)
T PTZ00142 156 LEKCSAKVGDSPCVTY-VGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEIT 234 (470)
T ss_pred HHHHhhhcCCCCeEEE-ECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHH
Confidence 9999987 666 589999999999999999999999999999998 7999999999888 4667888888766
Q ss_pred cccccCCCCCC-CchhhHHHH------HHHHHHHHHHhCCCCchHHHHH
Q 001973 368 VPHMLDNDYTP-YSALDIFVK------DMGIIARECLSQRVPLHISTIA 409 (988)
Q Consensus 368 ~~~~~~~~~~~-~~~l~~~~k------Dl~~~~~~a~~~gi~~pi~~a~ 409 (988)
...+...|-.. .+-++.... .-++....|-++|+|.|++.++
T Consensus 235 ~~~~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a 283 (470)
T PTZ00142 235 AKILAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAAS 283 (470)
T ss_pred HHHhhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHH
Confidence 55444443221 233332211 1248889999999999987644
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=297.53 Aligned_cols=254 Identities=23% Similarity=0.259 Sum_probs=220.1
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----CCcccCCHHHHhc---cCcEEEEEcCChHHHHHH
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----GGLIANSPAEAAK---DVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----G~~~~~s~~e~~~---~aDvV~l~vp~~~~~~~v 219 (988)
+|||||+|.||.+||.+|+++||+|++|||++++++++.+. ++..+++++++++ .+|+||+|||++..++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 49999999999999999999999999999999999999876 2556778888774 689999999999999999
Q ss_pred HccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHH
Q 001973 220 LYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLS 299 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~ 299 (988)
+ +++.+.+.+|++|||+||+.|..+++..+.+.+ +|++|+++||+|++..+..|. ++|+||+++++++++|+|+
T Consensus 81 i---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~--~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~ 154 (467)
T TIGR00873 81 I---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA--KGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQ 154 (467)
T ss_pred H---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh--cCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHH
Confidence 9 678899999999999999999999999888877 689999999999999999998 9999999999999999999
Q ss_pred hcCCeE------EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCccccccccc
Q 001973 300 ALSEKL------YVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGA-RLGLNTRVLFNII---TDSGGSSWMFENRVP 369 (988)
Q Consensus 300 ~~g~~v------~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~-~~Gid~~~~~~~l---~~~~~~s~~~~~~~~ 369 (988)
.++.++ ++ +|+.|+|+.+||++|.+.+.++++++|++.+++ +.|++++++.+++ +.+...||+++...+
T Consensus 155 ~ia~~~~~~~~~~~-~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~ 233 (467)
T TIGR00873 155 KIAAKVDGEPCCTW-IGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITAD 233 (467)
T ss_pred HHhhhcCCCCceEE-ECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHH
Confidence 999874 55 689999999999999999999999999999985 7999999999999 567788999887777
Q ss_pred cccCCCCCCCchhhHHHH------HHHHHHHHHHhCCCCchHHHH
Q 001973 370 HMLDNDYTPYSALDIFVK------DMGIIARECLSQRVPLHISTI 408 (988)
Q Consensus 370 ~~~~~~~~~~~~l~~~~k------Dl~~~~~~a~~~gi~~pi~~a 408 (988)
.+..+|-...+-++.... .-++....|-++|+|.|++.+
T Consensus 234 ~~~~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~ 278 (467)
T TIGR00873 234 ILKKKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITE 278 (467)
T ss_pred HHhccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHH
Confidence 666654322222222221 124888999999999998754
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-30 Score=293.14 Aligned_cols=291 Identities=17% Similarity=0.217 Sum_probs=226.7
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc----------------ccCCHHHHhccCcEEEE
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL----------------IANSPAEAAKDVGVLVI 208 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~----------------~~~s~~e~~~~aDvV~l 208 (988)
..|||||||+|+||.+||.+|++ ||+|++||+++++++.++ .|.. .+++..+++++||++|+
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 34799999999999999999988 699999999999999998 3432 23444567899999999
Q ss_pred EcCCh------HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec------Cc--ccCCccc
Q 001973 209 MVTNE------AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD------AP--VSGGVKR 274 (988)
Q Consensus 209 ~vp~~------~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld------ap--v~g~~~~ 274 (988)
|||++ .+++.++.+.+++.+++++|++||++||+.|++++++.+...++..|..+.+ +| +..|...
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~ 162 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKK 162 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccc
Confidence 99998 4557777666789999999999999999999999987555544323444444 33 3333333
Q ss_pred ccCCCeE-EEEeCCHHHHHHHHHHHHhcC-CeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 001973 275 ASMGELT-IMAAGTEESLKSTGSVLSALS-EKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFN 352 (988)
Q Consensus 275 a~~g~l~-~~~gg~~~~~~~~~~ll~~~g-~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~ 352 (988)
....++. ++.|++++..+.++++++.+. ..+++ .++++.|+.+|+++|++.++++++++|+..+|++.|+|.+++.+
T Consensus 163 ~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~-~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~ 241 (425)
T PRK15182 163 HRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYK-AESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLR 241 (425)
T ss_pred ccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEE-ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 3333333 555667778888999999986 34555 47999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHH
Q 001973 353 IITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKV 432 (988)
Q Consensus 353 ~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~ 432 (988)
+.+. ++.+..+.|++ +.-.|+.||..++...+++.|.+++++++++++++...+. +++.
T Consensus 242 a~~~----~~~~~~~~pG~--------vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~~~~---------v~~~ 300 (425)
T PRK15182 242 AAGS----KWNFLPFRPGL--------VGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNMGNY---------VSEQ 300 (425)
T ss_pred HhcC----CCCcccCCCCc--------cccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH---------HHHH
Confidence 8543 33333333333 4445566999999999999999999999999999988776 6666
Q ss_pred HHHhh---CccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 433 YETLS---GVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 433 ~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+.+.. |.++.| .+...||..||++++|
T Consensus 301 ~~~~l~~~~~~~~~--------~~V~vlGlafK~~t~D 330 (425)
T PRK15182 301 LIKAMIKKGINVEG--------SSVLILGFTFKENCPD 330 (425)
T ss_pred HHHHHHhcCCCCCC--------CEEEEEEeEeCCCCCc
Confidence 66544 334556 5677888888888888
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=289.44 Aligned_cols=245 Identities=22% Similarity=0.263 Sum_probs=219.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----CCcccCCHHHHhcc---CcEEEEEcCChHHHHHHHccccchhh
Q 001973 157 MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----GGLIANSPAEAAKD---VGVLVIMVTNEAQAESVLYGDLGAVS 228 (988)
Q Consensus 157 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----G~~~~~s~~e~~~~---aDvV~l~vp~~~~~~~vl~~~~~i~~ 228 (988)
||..||.+|+++||+|++|||++++++++.+. |+..++|++++++. +|+||+|||++..+++|+ +++.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence 89999999999999999999999999999884 58889999999875 899999999999999999 68899
Q ss_pred hCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeE---
Q 001973 229 ALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL--- 305 (988)
Q Consensus 229 ~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v--- 305 (988)
.+.+|++|||+||+.|..+++.++.+.+ +|++|+++||+|++..+..|. ++|+||+++++++++|+|+.++.++
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~--~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g 154 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAE--KGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDG 154 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHh--cCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCC
Confidence 9999999999999999999999999987 689999999999999999998 9999999999999999999999886
Q ss_pred ----EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HhcCCCccccccccccccCCCCC
Q 001973 306 ----YVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGA-RLGLNTRVLFNII---TDSGGSSWMFENRVPHMLDNDYT 377 (988)
Q Consensus 306 ----~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~-~~Gid~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~ 377 (988)
++ +|+.|+|+.+||++|.+.+.++++++|++.+++ +.|++++++.+++ +.+...|+.++...+.+..+|+.
T Consensus 155 ~~c~~~-vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~ 233 (459)
T PRK09287 155 EPCVTY-IGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEE 233 (459)
T ss_pred CCceee-eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCC
Confidence 66 589999999999999999999999999999999 5899999999998 57778999999888888888874
Q ss_pred CC-chhhHHHHH------HHHHHHHHHhCCCCchHHHH
Q 001973 378 PY-SALDIFVKD------MGIIARECLSQRVPLHISTI 408 (988)
Q Consensus 378 ~~-~~l~~~~kD------l~~~~~~a~~~gi~~pi~~a 408 (988)
.+ .-++....- -++....|-++|+|.|++..
T Consensus 234 ~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~ 271 (459)
T PRK09287 234 TGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITE 271 (459)
T ss_pred CCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHH
Confidence 43 333332211 14888999999999998754
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=271.82 Aligned_cols=336 Identities=16% Similarity=0.147 Sum_probs=262.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-------------------C-CcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-------------------G-GLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------G-~~~~~s~~e~~~~aDvV 206 (988)
|||+|||.|++|...+.+|++.||+|+++|+++++++.+++. | ..++++.+++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 699999999999999999999999999999999999998763 1 45788999999999999
Q ss_pred EEEcCChH---------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CCceEecCcccCCcccc
Q 001973 207 VIMVTNEA---------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG--KDLKLVDAPVSGGVKRA 275 (988)
Q Consensus 207 ~l~vp~~~---------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~--~g~~~ldapv~g~~~~a 275 (988)
|+|||+|. .++.+. +.+.++++..++||..||+.|+++.++.+.+.+.. +++..+..|.+-....|
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava---~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A 157 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVA---KDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA 157 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHH---HHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch
Confidence 99999985 345555 78888888889999999999999999998887632 23445555555444444
Q ss_pred cCCCe---EEEEeCCHH-HHHHHHHHHHhc---CCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 001973 276 SMGEL---TIMAAGTEE-SLKSTGSVLSAL---SEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTR 348 (988)
Q Consensus 276 ~~g~l---~~~~gg~~~-~~~~~~~ll~~~---g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~ 348 (988)
....+ .+++|...+ +.+.+++++..+ ..+++++ +...++..|+++|.+.+..+.+++|+..+|++.|+|.+
T Consensus 158 v~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t--~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~ 235 (414)
T COG1004 158 VYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFT--DLREAELIKYAANAFLATKISFINEIANICEKVGADVK 235 (414)
T ss_pred hhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEe--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 33332 277777554 577888888775 5566665 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHH
Q 001973 349 VLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAA 428 (988)
Q Consensus 349 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a 428 (988)
++.+.++....-++. +++. ..||.-+|+.||++.++..++++|.+.++++++.++++.....
T Consensus 236 ~V~~gIGlD~RIG~~-------fl~a--G~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~~--------- 297 (414)
T COG1004 236 QVAEGIGLDPRIGNH-------FLNA--GFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRKDK--------- 297 (414)
T ss_pred HHHHHcCCCchhhHh-------hCCC--CCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH---------
Confidence 999987755433322 2222 2345667788999999999999999999999999999999887
Q ss_pred HHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchhhhhHhhhccCcEEEEe-----------cCCCCccccc-ccc
Q 001973 429 VVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKTLIVL-----------DDDPTGTQTV-HGI 496 (988)
Q Consensus 429 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-----------aDD~TGa~~~-~g~ 496 (988)
+++.+.+..+ +.| +++..||..||++++| +|+.|.+-|+ +=|+.+.+.. +.+
T Consensus 298 ~~~~i~~~~~--l~G--------k~iavlgLafKpnTDD------~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~ 361 (414)
T COG1004 298 LAEKILNHLG--LKG--------KTIAVLGLAFKPNTDD------MRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNF 361 (414)
T ss_pred HHHHHHHhcC--CCC--------cEEEEEEEeecCCCcc------chhchHHHHHHHHHHCCCEEEEECchhhHHHHhcC
Confidence 8888888877 888 7889999999999999 6666644333 2266666555 332
Q ss_pred e-eEeecChhhHHHhhccCCcEEEEecCCC
Q 001973 497 E-VLTEWSVASLVEQFRKKPLCFFILTNSR 525 (988)
Q Consensus 497 ~-~~~~~~~~~~~~~~~~~~dvvvi~T~SR 525 (988)
. +.+.-+ .......+|+++++|+-.
T Consensus 362 ~~~~~~~~----~~~~~~~aDaivi~tew~ 387 (414)
T COG1004 362 PDVELESD----AEEALKGADAIVINTEWD 387 (414)
T ss_pred CCceEeCC----HHHHHhhCCEEEEeccHH
Confidence 2 222222 124456789999999854
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-29 Score=282.32 Aligned_cols=274 Identities=15% Similarity=0.198 Sum_probs=221.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh----------------cCCcc--cCCHHHHhccCcEEEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN----------------VGGLI--ANSPAEAAKDVGVLVI 208 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~----------------~G~~~--~~s~~e~~~~aDvV~l 208 (988)
|||+|||+|+||.++|..|+. ||+|++||+++++++.+++ .+... +.++.+++++||+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 489999999999999988875 9999999999999999876 23333 3447788899999999
Q ss_pred EcCCh----------HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCC
Q 001973 209 MVTNE----------AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMG 278 (988)
Q Consensus 209 ~vp~~----------~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g 278 (988)
|||++ ..+++++ +++.+ +++|++||+.||++|++++++.+.+.+ .++.| +|+++..|
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~--~~v~~-------~PE~l~~G 146 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT--ENIIF-------SPEFLREG 146 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc--CcEEE-------CcccccCC
Confidence 99988 5677776 56766 688999999999999999999988764 23332 67788888
Q ss_pred Ce--------EEEEeCCHHHHHHHHHHHHh--cCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 001973 279 EL--------TIMAAGTEESLKSTGSVLSA--LSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTR 348 (988)
Q Consensus 279 ~l--------~~~~gg~~~~~~~~~~ll~~--~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~ 348 (988)
++ .+++|++++..+++.++|.. ++..+..+.+++++|+..|+++|++.++++++++|+..+|++.|+|.+
T Consensus 147 ~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~ 226 (388)
T PRK15057 147 KALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTR 226 (388)
T ss_pred cccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence 88 89999999989999999864 555554235899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHH
Q 001973 349 VLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAA 428 (988)
Q Consensus 349 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a 428 (988)
++.++++.....+..+.+ | .+||.-.|+.||...+...+ .++++++++++.++++...+.
T Consensus 227 eV~~a~~~d~ri~~~~l~--p-------G~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~~~~--------- 286 (388)
T PRK15057 227 QIIEGVCLDPRIGNHYNN--P-------SFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTRKDF--------- 286 (388)
T ss_pred HHHHHhcCCCCCCCccCC--C-------CCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHhHHH---------
Confidence 999998765533222111 1 23455677889999887655 567899999999999998877
Q ss_pred HHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 429 VVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 429 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+++.+.+. .| ++...||..||++++|
T Consensus 287 ~~~~~~~~-----~~--------~~i~vlGlafK~~t~D 312 (388)
T PRK15057 287 IADAILSR-----KP--------QVVGIYRLIMKSGSDN 312 (388)
T ss_pred HHHHHHHh-----cC--------CEEEEEcceeCCCCCc
Confidence 77776653 33 4567888888888888
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=279.75 Aligned_cols=287 Identities=17% Similarity=0.156 Sum_probs=225.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc-CCHHHH---------------hccCcEEEEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA-NSPAEA---------------AKDVGVLVIM 209 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~-~s~~e~---------------~~~aDvV~l~ 209 (988)
+|||+|||+|+||.+||.+|+++||+|++||+++++++.++....... ..+.+. .++||+||+|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 479999999999999999999999999999999999998764332211 112221 3479999999
Q ss_pred cCCh---------HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCC------------CceEecCc-
Q 001973 210 VTNE---------AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGK------------DLKLVDAP- 267 (988)
Q Consensus 210 vp~~---------~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~------------g~~~ldap- 267 (988)
||++ ..+..++ +++.+++++|++||++||+.|++++++...+.+.+. .++++++|
T Consensus 83 vptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE 159 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPE 159 (415)
T ss_pred cCCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCC
Confidence 9997 4566666 688899999999999999999999999988876321 24567777
Q ss_pred -ccCCcccccCCCeEEEEeC-CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 001973 268 -VSGGVKRASMGELTIMAAG-TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGL 345 (988)
Q Consensus 268 -v~g~~~~a~~g~l~~~~gg-~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gi 345 (988)
+..|......++...++|| +++.+++++++|+.++..+++ .+++++|+.+|+++|++.+.++++++|+..+|++.|+
T Consensus 160 ~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~-~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~Gi 238 (415)
T PRK11064 160 RVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECV-VTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGI 238 (415)
T ss_pred ccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCee-eCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5555555555666688899 999999999999999988776 4799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCC
Q 001973 346 NTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQD 425 (988)
Q Consensus 346 d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d 425 (988)
|++++.+.++...... ...| .+||.-.|+.||..++.. +.+.+++++++++++++.....
T Consensus 239 D~~~v~~~~~~~~ri~----~l~p-------G~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~~~~~------ 298 (415)
T PRK11064 239 NVWELIRLANRHPRVN----ILQP-------GPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDGKPHW------ 298 (415)
T ss_pred CHHHHHHHhccCCCcc----cCCC-------CCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHHhHHH------
Confidence 9999999886544221 1112 134555677799987743 5677899999999999988776
Q ss_pred hHHHHHHHHHhh-------CccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 426 DAAVVKVYETLS-------GVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 426 ~~a~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+++.+.+.. +.++.| ++...||..||++++|
T Consensus 299 ---v~~~~~~~l~~~l~~~~~~~~~--------~~v~vlGlafK~~t~d 336 (415)
T PRK11064 299 ---VIDQVKAAVADCLAATDKRASE--------VKIACFGLAFKPNIDD 336 (415)
T ss_pred ---HHHHHHHHHhhhhhhhccCcCC--------CEEEEEeeEECCCCcc
Confidence 666665543 334555 5677788888888877
|
|
| >PF07005 DUF1537: Protein of unknown function, DUF1537; InterPro: IPR010737 This entry represents a conserved region found in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=269.74 Aligned_cols=215 Identities=26% Similarity=0.376 Sum_probs=157.9
Q ss_pred HcCCCCCCCceeEEehHHHhccChhHHHHHHhcccCC--CeEEEecCChhHHHHHHHHHHHHHHcCCcEEEEcchHHHHH
Q 001973 640 KTSGRIPASSVASISIQLLRKGGPDAVCERLCSLQKG--STCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSA 717 (988)
Q Consensus 640 q~~~~~~~~~v~~i~l~~v~~~~~~~~~~~l~~~~~~--~i~V~Da~t~~dL~~ia~a~~~~~~~~~~~l~vg~agl~~~ 717 (988)
||++ +|++|++++|++ |.+.+.+++.++.++ +++||||+|++||+.|++++++ .+.++||+||+||+.+
T Consensus 1 Qt~~-----~v~~i~l~~v~~-g~~~l~~~l~~~~~~g~~ivV~Da~t~~DL~~ia~a~~~---~~~~~l~vGsagla~a 71 (223)
T PF07005_consen 1 QTKR-----PVGLIDLEDVRR-GPEALSAALAALQAEGARIVVFDAETDEDLDAIAEALLE---LGRRVLWVGSAGLAAA 71 (223)
T ss_dssp CSSS-----EEEEE-HHHHCC--HHHHHHHHHHHHHTTECEEEE-BSSCHHHHHHHHHCTT----S---EEEESCHHHHH
T ss_pred CCCC-----ceEEEEHHHHhC-cHHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHh---CCCceEEecchHHHHH
Confidence 5665 599999999998 689999999988544 8999999999999999999954 6778899999999999
Q ss_pred HhcccccCCCCccccccccC-CCceEEEEeccccccHHHHHHHHhhcCCcEEEEEEehhHHHhhchHhHHHHHHHHHHHH
Q 001973 718 RIGIVAKAPILPKDLGNKIE-STGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMKSLEERQEEIIRAAEMV 796 (988)
Q Consensus 718 L~~~~~~~~~~~~~~~~~~~-~~~~L~v~GS~s~~T~~Qi~~l~~~~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~ 796 (988)
|++.+..++..+.......+ .+|+|+||||+|++|++|++++ ++.+ +..+++|++++++ +.+++++.+++
T Consensus 72 L~~~~~~~~~~~~~~~~~~~~~~~~Lvv~GS~s~~T~~Qi~~l-~~~~--~~~i~l~~~~l~~------~~~~~~~~~~~ 142 (223)
T PF07005_consen 72 LARALASPPEQPSQPPLPSPSRGPVLVVVGSVSPVTRRQIAYL-EQAG--VPVIELDPEQLLD------EAEIERVAAEI 142 (223)
T ss_dssp HHHHHHTT--C---CCCCS--SSEEEEEE---SHHHHHHHHHH--CCT--S-EEE--HHHCCH------CCHHHHHHHHH
T ss_pred HHhhhccCcccccccccccCCCCCeEEEEcCCCHHHHHHHHHH-HHCC--CcEEEechhhhcC------HHHHHHHHHHH
Confidence 98765543322111111111 7899999999999999999999 6667 7899999999982 56788899999
Q ss_pred HHHHhcCCcEEEEecCcccc---cCCccchHHHHHHHHHHHHHHHHHhhc--CcceeeeccccchHHHHHhhccccceEE
Q 001973 797 DVFLQARKDTLLITSRVLIT---GKTPSESLEINLKVSSAMVEIVRRITT--RPRYILAKGGITSSDIATKALEAKRAKV 871 (988)
Q Consensus 797 ~~~l~~~~~~vi~t~~~~~~---~~~~~~~~~~~~~i~~~l~~i~~~~~~--~~~~li~tGGdTs~~v~~~~Lg~~~~~~ 871 (988)
.+.+.+|++++|+|++.... .........+++.|++.|+++++++++ ++++||+||||||.+++ ++||++++++
T Consensus 143 ~~~l~~g~~~vi~t~~~~~~~~~~~~~~~~~~~s~~i~~~la~l~~~l~~~~~~~~li~tGGDTa~av~-~~Lg~~~l~i 221 (223)
T PF07005_consen 143 RAALQQGKTVVIYTSRGPEDVRDADAAGEKEGLSREIADALAELAARLLERVGISGLILTGGDTASAVL-KALGASGLEI 221 (223)
T ss_dssp HCTTTSSS--EEE-TTGHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHC-TEEEEEEESHHHHHHHH-HHCT--EEEE
T ss_pred HHHHhcCCceEEEecCCchhhhhHHHHHHhhccHHHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHH-HHhCCCeEEe
Confidence 99999999999999886421 122223456788899999999999986 69999999999999995 8899999998
Q ss_pred ec
Q 001973 872 VG 873 (988)
Q Consensus 872 ~~ 873 (988)
++
T Consensus 222 ~~ 223 (223)
T PF07005_consen 222 LG 223 (223)
T ss_dssp EE
T ss_pred cC
Confidence 74
|
This entry includes YgbK from Escherichia coli, which is dependent upon FlhDC, the master regulator of the flagellar genes. The ygbK gene appears to be regulated by sigmaF [].; PDB: 3DQQ_B 1YZY_B. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-29 Score=250.47 Aligned_cols=162 Identities=38% Similarity=0.618 Sum_probs=145.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
||||||||+|.||.+||++|+++||+|++|||++++.+++.+.|++.++|+.|+++++|+||+|||++.++++++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~- 79 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN- 79 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999997666
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeE
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL 305 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v 305 (988)
+.+++.+|++|||+||.+|.+++++++.+.+ +|++|+|+||+|++..+..|++++++||+++.+++++++|+.++.++
T Consensus 80 i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~--~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v 157 (163)
T PF03446_consen 80 ILAGLRPGKIIIDMSTISPETSRELAERLAA--KGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNV 157 (163)
T ss_dssp HGGGS-TTEEEEE-SS--HHHHHHHHHHHHH--TTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEE
T ss_pred HhhccccceEEEecCCcchhhhhhhhhhhhh--ccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999987 68999999999999999999999999999999999999999999999
Q ss_pred EEEeC
Q 001973 306 YVIKG 310 (988)
Q Consensus 306 ~~~~g 310 (988)
+|+.|
T Consensus 158 ~~~~G 162 (163)
T PF03446_consen 158 YHYVG 162 (163)
T ss_dssp EEE-E
T ss_pred eeeeC
Confidence 85324
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-27 Score=234.15 Aligned_cols=279 Identities=22% Similarity=0.294 Sum_probs=226.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhc---cCcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAK---DVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~---~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|+||.||+|.||..|.++|.+.||+|++||+|++.++++...|++.++|+.+.+. ...+|+++||....+..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi--- 77 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI--- 77 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence 5899999999999999999999999999999999999999999999999888764 5689999999998899999
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSE 303 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~ 303 (988)
+++.+.|.+|.+|||-.++....+.+.++.+.+ +|++|+|+-.+|++..+..|- .+|+||+++++++++|+|+.+..
T Consensus 78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAP 154 (300)
T ss_pred HHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCc
Confidence 789999999999999999999999999999988 789999999999999999998 89999999999999999998764
Q ss_pred --eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHhcC-CCccccccccccccC-CCCC
Q 001973 304 --KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLG--LNTRVLFNIITDSG-GSSWMFENRVPHMLD-NDYT 377 (988)
Q Consensus 304 --~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~G--id~~~~~~~l~~~~-~~s~~~~~~~~~~~~-~~~~ 377 (988)
.-|..+|+.|+++.+||++|-+...++++++|.+.+.++.. +|.+++.++.+.++ -.||.++-....+.+ .++.
T Consensus 155 ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~ 234 (300)
T COG1023 155 GEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLD 234 (300)
T ss_pred CcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHH
Confidence 34555899999999999999999999999999999998864 67899999999987 568876533221111 0100
Q ss_pred CCchhhHHHH---HHHHHHHHHHhCCCCchHHHHH-HHHHHHHHHcCCCCCChHH-HHHHHHHhhCc
Q 001973 378 PYSALDIFVK---DMGIIARECLSQRVPLHISTIA-HQLFLAGSAAGWGRQDDAA-VVKVYETLSGV 439 (988)
Q Consensus 378 ~~~~l~~~~k---Dl~~~~~~a~~~gi~~pi~~a~-~~~~~~a~~~g~g~~d~~a-~~~~~~~~~g~ 439 (988)
.+.-... +-++.++.+-+.|+|.|++... ...|+... +..|+. ++..++...|.
T Consensus 235 ---q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~-----~d~f~~kvlaalR~~FGg 293 (300)
T COG1023 235 ---QISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQ-----DDTFAGKVLAALRNEFGG 293 (300)
T ss_pred ---HhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccc-----hhhHHHHHHHHHHHHhCC
Confidence 0000111 1247788999999999987644 33333322 233433 55556655553
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-26 Score=256.06 Aligned_cols=275 Identities=17% Similarity=0.195 Sum_probs=222.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--------C------CcccCCHHHHhccCcEEEEEc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--------G------GLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------G------~~~~~s~~e~~~~aDvV~l~v 210 (988)
.+|||+|||+|.||++||.+|+++||+|++|+|++++.+.++.. | +..++++.++++.+|+||+|+
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v 82 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAV 82 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEEC
Confidence 45799999999999999999999999999999999998888764 3 345678889899999999999
Q ss_pred CChHHHHHHHccccchhhhCCCCCEEEecCCC-CHHH--HHHHHHHHHh-cCCCceEecCcccCCcccccCCCeEEEEeC
Q 001973 211 TNEAQAESVLYGDLGAVSALSSGASIILSSTV-SPGF--VSQLERRLQF-EGKDLKLVDAPVSGGVKRASMGELTIMAAG 286 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~l~~g~ivId~st~-~p~~--~~~l~~~l~~-~~~g~~~ldapv~g~~~~a~~g~l~~~~gg 286 (988)
|+.. +++++ +.++++.++|+++++ .|.. .+.+++.+.+ ...++.++.+|..........+++.+++|+
T Consensus 83 ~~~~-~~~v~-------~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~ 154 (328)
T PRK14618 83 PSKA-LRETL-------AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASP 154 (328)
T ss_pred chHH-HHHHH-------HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeC
Confidence 9975 56665 445678899999984 6554 5677776654 112455666665544444455788899999
Q ss_pred CHHHHHHHHHHHHhcCCeEEE-------EeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 001973 287 TEESLKSTGSVLSALSEKLYV-------IKGG---------CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVL 350 (988)
Q Consensus 287 ~~~~~~~~~~ll~~~g~~v~~-------~~g~---------~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~ 350 (988)
+.+.+++++++|+..+.++++ ..+. .|.+..+|+.+|+..+++..++.|+..++++.|++++++
T Consensus 155 ~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~ 234 (328)
T PRK14618 155 EPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATF 234 (328)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccch
Confidence 999999999999999988863 1122 588999999999999999999999999999999999999
Q ss_pred HHHHHh----cCCCccccccccc--cccCC---C-CCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcC
Q 001973 351 FNIITD----SGGSSWMFENRVP--HMLDN---D-YTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420 (988)
Q Consensus 351 ~~~l~~----~~~~s~~~~~~~~--~~~~~---~-~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g 420 (988)
++++.. +++.|+.++++.. .+..+ + +.+.|.+..+.||++.+.+++++.|+++|+++.+++++
T Consensus 235 ~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~------- 307 (328)
T PRK14618 235 YGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA------- 307 (328)
T ss_pred hcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------
Confidence 999876 3688988888854 66666 3 66778999999999999999999999999999999997
Q ss_pred CCCCChHHHHHHHH
Q 001973 421 WGRQDDAAVVKVYE 434 (988)
Q Consensus 421 ~g~~d~~a~~~~~~ 434 (988)
+++.|...+++.+-
T Consensus 308 ~~~~~~~~~~~~~~ 321 (328)
T PRK14618 308 RGGWDPLAGLRSLM 321 (328)
T ss_pred hCCCCHHHHHHHHh
Confidence 34556555555443
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=251.86 Aligned_cols=292 Identities=14% Similarity=0.112 Sum_probs=228.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhcC-------------------CcccCCHHHHhccCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNVG-------------------GLIANSPAEAAKDVG 204 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~G-------------------~~~~~s~~e~~~~aD 204 (988)
+|||+|||+|++|..+|..|+++| |+|++||+++++++.+++.+ ..++++..+++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 379999999999999999999985 88999999999999976532 335677788899999
Q ss_pred EEEEEcCChH--------------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc--CCCceEecCcc
Q 001973 205 VLVIMVTNEA--------------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFE--GKDLKLVDAPV 268 (988)
Q Consensus 205 vV~l~vp~~~--------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~--~~g~~~ldapv 268 (988)
++|+|||+|. .++.+. +.+.++++++++||..||+.|++++++.+.+.+. +.++++..+|.
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 9999998775 345555 6788899999999999999999999999888764 33566777887
Q ss_pred cCCcccccCCC---eEEEEeCC-----HHHHHHHHHHHHhcCC-eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001973 269 SGGVKRASMGE---LTIMAAGT-----EESLKSTGSVLSALSE-KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAF 339 (988)
Q Consensus 269 ~g~~~~a~~g~---l~~~~gg~-----~~~~~~~~~ll~~~g~-~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l 339 (988)
+-.+..+.... -.+++||. +++.+.++.+++.+.+ ..+. ..++.+|+..|++.|.+.++++++++|+..+
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~-~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~l 236 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERII-TTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEE-ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665544432 22566764 3357888999998863 2333 3699999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHH
Q 001973 340 GARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVP--LHISTIAHQLFLAGS 417 (988)
Q Consensus 340 a~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~--~pi~~a~~~~~~~a~ 417 (988)
|++.|+|..++.+.++.....++.+.+ | .+|+.-.|+.||..++...+++.|.+ +++.+++.++++...
T Consensus 237 ce~~giD~~eV~~~~~~d~rig~~~l~--P-------G~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~~~~ 307 (473)
T PLN02353 237 CEATGADVSQVSHAVGKDSRIGPKFLN--A-------SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMNDYQK 307 (473)
T ss_pred HHHhCCCHHHHHHHhCCCCcCCCCCCC--C-------CCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHHhhH
Confidence 999999999999988765432222111 1 23455567889999999999999998 889999998888776
Q ss_pred HcCCCCCChHHHHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 418 AAGWGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 418 ~~g~g~~d~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+. +++.+.+..+-++.| .+...||..||++++|
T Consensus 308 ~~---------vv~~~~~~l~~~~~~--------~~VavlGlafK~~tdD 340 (473)
T PLN02353 308 SR---------FVNRVVSSMFNTVSG--------KKIAVLGFAFKKDTGD 340 (473)
T ss_pred HH---------HHHHHHHHhhcccCC--------CEEEEEeeeecCCCCc
Confidence 65 666666554334555 5677888888888888
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=245.03 Aligned_cols=274 Identities=16% Similarity=0.183 Sum_probs=215.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--------------CCcccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--------------GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------------G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
|||+|||+|.||..+|.+|+++||+|++|||++++++.+++. ++..++++.++++++|+||+|+|+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 699999999999999999999999999999999999988876 345567888888999999999998
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecC-CCCHHHHHHHHHHHHhcCC---CceEecCcccCCcccccCCCeEEEEeCCH
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSS-TVSPGFVSQLERRLQFEGK---DLKLVDAPVSGGVKRASMGELTIMAAGTE 288 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~s-t~~p~~~~~l~~~l~~~~~---g~~~ldapv~g~~~~a~~g~l~~~~gg~~ 288 (988)
. .+++++ +++.+.+.+++++|+++ +..|.+.+.+++.+.+... ...++.+|.......+...++.++.+++.
T Consensus 82 ~-~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 82 Q-ALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred H-HHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 5 588887 57778888899999998 7777766666666655321 23456666655444455567777888899
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 001973 289 ESLKSTGSVLSALSEKLYVIKGG-----------------CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLF 351 (988)
Q Consensus 289 ~~~~~~~~ll~~~g~~v~~~~g~-----------------~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~ 351 (988)
+.++++.++|+..+.++++. ++ .|.+..+|+.+|.+..++..+++|++.++++.|+|++++.
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~-~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~ 236 (325)
T PRK00094 158 ELAERVQELFHSPYFRVYTN-TDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFL 236 (325)
T ss_pred HHHHHHHHHhCCCCEEEEec-CCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 99999999999988776552 33 2777888999999999999999999999999999999999
Q ss_pred HHHHhc----CCCcccccccccc--ccCCC-C-----CCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc
Q 001973 352 NIITDS----GGSSWMFENRVPH--MLDND-Y-----TPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419 (988)
Q Consensus 352 ~~l~~~----~~~s~~~~~~~~~--~~~~~-~-----~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~ 419 (988)
+++..+ ++.|+..+++.++ +..+. + ..+ .+..+.||++.+.++++++|+++|+.+++++++
T Consensus 237 ~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~------ 309 (325)
T PRK00094 237 GLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL------ 309 (325)
T ss_pred cccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH------
Confidence 876655 4556656555422 22221 1 112 456788999999999999999999999999998
Q ss_pred CCCCCChHHHHHHH
Q 001973 420 GWGRQDDAAVVKVY 433 (988)
Q Consensus 420 g~g~~d~~a~~~~~ 433 (988)
+++.+...+++.+
T Consensus 310 -~~~~~~~~~~~~~ 322 (325)
T PRK00094 310 -YEGKDPREAVEDL 322 (325)
T ss_pred -cCCCCHHHHHHHH
Confidence 3455665555544
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=226.10 Aligned_cols=256 Identities=20% Similarity=0.258 Sum_probs=197.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-------------------C-CcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-------------------G-GLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------G-~~~~~s~~e~~~~aDvV 206 (988)
++|||||+|++|.++|..++++|++|+++|+++.+++.+++. | .+.++++.++ +.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEE
Confidence 799999999999999999999999999999999999988763 1 3456666665 499999
Q ss_pred EEEcCChH------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceE-ecCcccCCcccccCCC
Q 001973 207 VIMVTNEA------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKL-VDAPVSGGVKRASMGE 279 (988)
Q Consensus 207 ~l~vp~~~------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~-ldapv~g~~~~a~~g~ 279 (988)
++|||+|- ++..+....+.+.+.|++|.+||.-||+.|++++++...+.+...|..+ .|.-+...|++...|.
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~PG~ 168 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGN 168 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccCCCc
Confidence 99999984 2333333337889999999999999999999999999999875344333 2333333344444443
Q ss_pred --------eEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 001973 280 --------LTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLF 351 (988)
Q Consensus 280 --------l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~ 351 (988)
.-++.|-+++..+.++.+++.+-..++. ..+...|++.|+..|.+..+++++++|...+|+++|+|..+++
T Consensus 169 ~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~-vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevI 247 (436)
T COG0677 169 VLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIP-VTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVI 247 (436)
T ss_pred hhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEE-cCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 2244455677888889999998887665 5899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcccccccccc-ccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001973 352 NIITDSGGSSWMFENRVPH-MLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAG 416 (988)
Q Consensus 352 ~~l~~~~~~s~~~~~~~~~-~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a 416 (988)
++.+.-.. +.-+.|+ -++|.+ ...|--++...++++|.++.+++.+.+++..-
T Consensus 248 eaAnt~P~----~~~~~PGpGvGGHC--------IpvDP~fl~~ka~~yg~~~rlI~tAreIN~~m 301 (436)
T COG0677 248 EAANTKPR----VNIFYPGPGVGGHC--------IPVDPYFLTWKAPEYGLPARLIRTAREINDSM 301 (436)
T ss_pred HHhccCCc----eeecCCCCCCCCcc--------cccCchheeecccccCCchHHHHHHHHHhccC
Confidence 97765433 2222333 133333 33666788888888888888888888877643
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-24 Score=235.79 Aligned_cols=254 Identities=16% Similarity=0.218 Sum_probs=200.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.|||+|||+|.||++||.+|.++||+|++|||++. +++.++++++|+||+|+|+. .++.++ +.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~-~~~~v~---~~ 66 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSMK-GVRPVA---EQ 66 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECChH-HHHHHH---HH
Confidence 46999999999999999999999999999999853 57888899999999999995 688887 45
Q ss_pred hhhh-CCCCCEEEecCC-CCHHHHHHHHHHHHhcCCCceEecCccc--CCcccc-----cCCCeEEEEeCCHHHHHHHHH
Q 001973 226 AVSA-LSSGASIILSST-VSPGFVSQLERRLQFEGKDLKLVDAPVS--GGVKRA-----SMGELTIMAAGTEESLKSTGS 296 (988)
Q Consensus 226 i~~~-l~~g~ivId~st-~~p~~~~~l~~~l~~~~~g~~~ldapv~--g~~~~a-----~~g~l~~~~gg~~~~~~~~~~ 296 (988)
+.++ +.++++||++|+ ..|.+.+.+.+.+.. ++.+.|+. ++|..+ ..+++++++|++.+.++.+++
T Consensus 67 l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~-----~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ 141 (308)
T PRK14619 67 VQALNLPPETIIVTATKGLDPETTRTPSQIWQA-----AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQ 141 (308)
T ss_pred HHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH-----HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHH
Confidence 6553 678899999986 777776666666654 24456663 455443 235788999999999999999
Q ss_pred HHHhcCCeEEEEeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 297 VLSALSEKLYVIKGG-----------------CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 297 ll~~~g~~v~~~~g~-----------------~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
+|+..+.++++ .++ .|.+..+|+.+|...+.+..++.|++.++++.|+++++++++ .+.+
T Consensus 142 ll~~~~~~~~~-~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~--~g~g 218 (308)
T PRK14619 142 IFSSERFRVYT-NSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL--SGLG 218 (308)
T ss_pred HhCCCcEEEEe-cCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc--cchh
Confidence 99999988875 344 333555568999999999999999999999999999999985 2444
Q ss_pred CccccccccccccCCCCCCCchhhHH----------------HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC
Q 001973 360 SSWMFENRVPHMLDNDYTPYSALDIF----------------VKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGR 423 (988)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~l~~~----------------~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~ 423 (988)
.++. ..+.+..++|..+|.+... .||++.+.++++++|+++|++.++++++. ++
T Consensus 219 d~~~---t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~-------~~ 288 (308)
T PRK14619 219 DLLA---TCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQ-------GE 288 (308)
T ss_pred hhhe---eecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHc-------CC
Confidence 4443 2245666777667766666 89999999999999999999999999984 45
Q ss_pred CChHHHHHHHH
Q 001973 424 QDDAAVVKVYE 434 (988)
Q Consensus 424 ~d~~a~~~~~~ 434 (988)
.+...+++.+.
T Consensus 289 ~~~~~~~~~l~ 299 (308)
T PRK14619 289 ITPQQALEELM 299 (308)
T ss_pred CCHHHHHHHHH
Confidence 55555555443
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-22 Score=220.06 Aligned_cols=266 Identities=17% Similarity=0.100 Sum_probs=211.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhcCC-------------cccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF-----------QNVGG-------------LIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G~-------------~~~~s~~e~~~~ 202 (988)
|+|+|||+|.||.+||.+|+++||+|++||++++..+.. .+.|. ..++++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 589999999999999999999999999999999877653 34442 567889999999
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEE
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTI 282 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~ 282 (988)
||+|+.|+|+..+++..++ ..+.+.. ++.+++..||. +....++++.+.. .+..+++.|+.+.... .++.
T Consensus 83 ad~Vi~avpe~~~~k~~~~--~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~--~~~~~~~hp~~p~~~~----~lve 152 (308)
T PRK06129 83 ADYVQESAPENLELKRALF--AELDALA-PPHAILASSTS-ALLASAFTEHLAG--RERCLVAHPINPPYLI----PVVE 152 (308)
T ss_pred CCEEEECCcCCHHHHHHHH--HHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCC--cccEEEEecCCCcccC----ceEE
Confidence 9999999999876666554 3343434 45555554444 5556677777644 5667888898653211 3566
Q ss_pred EEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 283 MAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 283 ~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
+++ ++++.++.++++++.+|++++++ +..+.+. ++||+ ...+++|++.++++.|+|++++.+++..+.+
T Consensus 153 iv~~~~t~~~~~~~~~~~~~~lG~~~v~v-~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g 224 (308)
T PRK06129 153 VVPAPWTAPATLARAEALYRAAGQSPVRL-RREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLG 224 (308)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccC
Confidence 775 88999999999999999999885 5555554 45664 3467999999999999999999999999999
Q ss_pred CccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHH
Q 001973 360 SSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKV 432 (988)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~ 432 (988)
.+|.+ ..|..+.+.|.++|....+.||..+..+++++.+.++|++....+.+-...+.-++..++..+.+.
T Consensus 225 ~~~~~--~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (308)
T PRK06129 225 LRWSF--MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAW 295 (308)
T ss_pred CCccC--cCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 98877 566666777778899999999999999999999999999988888777777777888888776654
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=208.93 Aligned_cols=254 Identities=22% Similarity=0.255 Sum_probs=206.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC-----CcccCCHHHHh---ccCcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG-----GLIANSPAEAA---KDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G-----~~~~~s~~e~~---~~aDvV~l~vp~~~~~~~ 218 (988)
+.||+||+|-||+.+|.|++++||+|.+|||++++.+++.+.. +..+.|++|.+ +...-|+++|.....++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 5899999999999999999999999999999999999988753 44577888765 567899999998877888
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVL 298 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 298 (988)
++ ++++++|.+|+++||-.+.....+.+..+.+.+ +|++|+-.-|+||..++..|. ++|.||++++++.++|+|
T Consensus 84 ~I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~--~Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil 157 (473)
T COG0362 84 VI---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSE--KGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPIL 157 (473)
T ss_pred HH---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHh--cCCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHH
Confidence 88 789999999999999988777777777777777 689999999999999999999 899999999999999999
Q ss_pred HhcCC------eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHhc---CCCcccccccc
Q 001973 299 SALSE------KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLFNIITDS---GGSSWMFENRV 368 (988)
Q Consensus 299 ~~~g~------~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~~~l~~~---~~~s~~~~~~~ 368 (988)
..+.. .+.+ .|+-|+++.+|+++|-....-+++++|+..+.+. +|++.+++.+++... -..|+..+...
T Consensus 158 ~~IaAk~~g~pCc~~-iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~ 236 (473)
T COG0362 158 TKIAAKVDGEPCCTW-IGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITA 236 (473)
T ss_pred HHHHhhcCCCCceee-ECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHH
Confidence 98753 2445 4899999999999999999999999999999888 899988887776653 34565554433
Q ss_pred ccccCCCCCCC-chhhHHHHHH------HHHHHHHHhCCCCchHHH
Q 001973 369 PHMLDNDYTPY-SALDIFVKDM------GIIARECLSQRVPLHIST 407 (988)
Q Consensus 369 ~~~~~~~~~~~-~~l~~~~kDl------~~~~~~a~~~gi~~pi~~ 407 (988)
.-+...|-..+ .-++..+.-. ++....|.+.|+|++++.
T Consensus 237 ~IL~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~ 282 (473)
T COG0362 237 DILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLIT 282 (473)
T ss_pred HHHhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHH
Confidence 33333333323 2333333222 377788899999988764
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=201.22 Aligned_cols=264 Identities=16% Similarity=0.196 Sum_probs=208.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--------------CCcccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--------------GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------------G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
+||+|||.|+||+++|..|+++||+|++|.|+++.++++++. ++.+++|+.++++++|+|++++|+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 699999999999999999999999999999999999998874 234688999999999999999998
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecCC-CCHHHHHHHHHHHHhcCC--CceEecCcccCCcccccCCCeEEEEeCCHH
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSST-VSPGFVSQLERRLQFEGK--DLKLVDAPVSGGVKRASMGELTIMAAGTEE 289 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~st-~~p~~~~~l~~~l~~~~~--g~~~ldapv~g~~~~a~~g~l~~~~gg~~~ 289 (988)
.. +++++ +.+.++++++.++|.+|. ..|++.+.+.+.+.+.-. .+.++++|-+.........+.+++.+.|.+
T Consensus 82 ~~-~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~ 157 (329)
T COG0240 82 QA-LREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQE 157 (329)
T ss_pred HH-HHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHH
Confidence 54 88888 567678889999999884 455666667776665321 245667776666666666777888888999
Q ss_pred HHHHHHHHHHhcCCeEEEEeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 001973 290 SLKSTGSVLSALSEKLYVIKGG-----------------CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFN 352 (988)
Q Consensus 290 ~~~~~~~ll~~~g~~v~~~~g~-----------------~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~ 352 (988)
..++++.+|+.--.++|. ..+ .|....+++.+|...+++..+++|+.+++.++|.+++++..
T Consensus 158 ~a~~v~~~f~~~~Frvy~-~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~g 236 (329)
T COG0240 158 AAEKVQALFSSPYFRVYT-STDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMG 236 (329)
T ss_pred HHHHHHHHhCCCcEEEEe-cCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcc
Confidence 999999999875555554 233 36667777899999999999999999999999999999988
Q ss_pred HHHhc----CCCccccccccccc-cCCCCC------CCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001973 353 IITDS----GGSSWMFENRVPHM-LDNDYT------PYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLA 415 (988)
Q Consensus 353 ~l~~~----~~~s~~~~~~~~~~-~~~~~~------~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~ 415 (988)
+.+-| +++|..++|+.-+. +.+... ....+-+..+..+.+.++++++|+++|+++++++++..
T Consensus 237 LsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~~ 310 (329)
T COG0240 237 LSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLYE 310 (329)
T ss_pred cccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 77665 57777777764432 222111 11234455677789999999999999999999999864
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-21 Score=185.26 Aligned_cols=113 Identities=32% Similarity=0.516 Sum_probs=106.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccc-cccCCCCc-chHHHHHHhHHHHHHHHHh
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPN-LLRGDAKL-HFLNAFIQNLGIALDMAKT 78 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~-~~~~~~~~-f~l~l~~KDl~la~~~a~~ 78 (988)
||||+++++++.+++|++.+|+++|||+++++|+|+.++++||+++++.|. +.+++|+| |+++++.||++++.++|++
T Consensus 8 l~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~ 87 (122)
T PF14833_consen 8 LANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRLALDLAKE 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999984 99999999 9999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHH
Q 001973 79 LAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 79 ~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
.|+|+|+.+.+++.|+.+.++|+|++|+++++++|
T Consensus 88 ~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 88 AGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp TT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 99999999999999999999999999999999976
|
... |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-20 Score=208.94 Aligned_cols=259 Identities=17% Similarity=0.150 Sum_probs=188.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-----------------cCCHHHHhccCcEEEEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-----------------ANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-----------------~~s~~e~~~~aDvV~l~ 209 (988)
|||+|||+|.||+.+|..|+++||+|++|||++. .+.+++.|... +++. +.+..+|+||+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 6899999999999999999999999999999754 46676665432 3344 567899999999
Q ss_pred cCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC--c---ccCCccccc---CCCeE
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA--P---VSGGVKRAS---MGELT 281 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda--p---v~g~~~~a~---~g~l~ 281 (988)
+|++. ..+++ +.+.+.+.++++|+++++ .....+.+.+.++. .+++.+ | +..+|..+. .|++.
T Consensus 81 vk~~~-~~~~~---~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~----~~~~~g~~~~~~~~~~pg~~~~~~~g~l~ 151 (341)
T PRK08229 81 VKSAA-TADAA---AALAGHARPGAVVVSFQN-GVRNADVLRAALPG----ATVLAGMVPFNVISRGPGAFHQGTSGALA 151 (341)
T ss_pred ecCcc-hHHHH---HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCC----CcEEEEEEEEEEEecCCceEEecCCCceE
Confidence 99876 56666 577788888899888865 34555566665543 234444 2 343443333 45543
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
Q 001973 282 IMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVH--------------------IASAAEAMAFGA 341 (988)
Q Consensus 282 ~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~--------------------~~~~~Ea~~la~ 341 (988)
+. +.+.++++.++|+..+.++++ .++++...|.|++.|++..+. ...+.|++.+++
T Consensus 152 ~~---~~~~~~~~~~~l~~~g~~~~~-~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~ 227 (341)
T PRK08229 152 IE---ASPALRPFAAAFARAGLPLVT-HEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLK 227 (341)
T ss_pred ec---CCchHHHHHHHHHhcCCCcee-cchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 32 345678999999999988887 689999999999999744333 377999999999
Q ss_pred HcCCCHHHHHHHHHhc-----CCCccccccccccccCCCCCCCchhhHHHHHHH------------HHHHHHHhCCCCch
Q 001973 342 RLGLNTRVLFNIITDS-----GGSSWMFENRVPHMLDNDYTPYSALDIFVKDMG------------IIARECLSQRVPLH 404 (988)
Q Consensus 342 ~~Gid~~~~~~~l~~~-----~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~------------~~~~~a~~~gi~~p 404 (988)
+.|++++.+.++...+ ...++.+....+.+...++.. ...|.+|+. ++++.|+++|+++|
T Consensus 228 a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P 304 (341)
T PRK08229 228 AAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAP 304 (341)
T ss_pred HcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCc
Confidence 9999987655443333 123344444434444444432 345999998 79999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC
Q 001973 405 ISTIAHQLFLAGSAAGWGR 423 (988)
Q Consensus 405 i~~a~~~~~~~a~~~g~g~ 423 (988)
..+.++++++.+.+.|...
T Consensus 305 ~~~~~~~~~~~~~~~~~~~ 323 (341)
T PRK08229 305 VNARLCALVHEAERAGARP 323 (341)
T ss_pred HHHHHHHHHHHHHhCCCcC
Confidence 9999999999998876443
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-20 Score=200.23 Aligned_cols=114 Identities=34% Similarity=0.575 Sum_probs=111.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
||||+++++++++++||+.|++|+|||++.+.+++++++++||+++++.++|++++|+| |.++++.||+++++++|++.
T Consensus 172 l~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KDl~la~~~A~~~ 251 (286)
T COG2084 172 LANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKEL 251 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHH
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWE 114 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~ 114 (988)
|+++|+++++.++|+.+.+.|+|++|++++++.++
T Consensus 252 g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 252 GAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 99999999999999999999999999999998864
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-20 Score=193.04 Aligned_cols=118 Identities=25% Similarity=0.455 Sum_probs=115.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
|||||++++++.+++|+|.||+++|+|+..++|+|+.|.++|+++.++.|.|+.+||.| |.+++|.|||+++++++.+.
T Consensus 207 l~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KDLgla~~~a~~~ 286 (327)
T KOG0409|consen 207 LCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKDLGLALNAAESV 286 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 69999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhc
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLG 118 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g 118 (988)
++|+|++++++|+|+.+++.|+|+.|++++++.+++..+
T Consensus 287 ~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~ 325 (327)
T KOG0409|consen 287 KVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNG 325 (327)
T ss_pred CCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhcc
Confidence 999999999999999999999999999999999887654
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=192.60 Aligned_cols=200 Identities=20% Similarity=0.259 Sum_probs=165.9
Q ss_pred CeEEEEccchH--------------------HHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhcCCcccCCHHHHhc
Q 001973 147 TRVGFIGLGAM--------------------GFGMATHLLRSNFTVIGYDVYRP-----TLTKFQNVGGLIANSPAEAAK 201 (988)
Q Consensus 147 ~kIgiIG~G~m--------------------G~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~G~~~~~s~~e~~~ 201 (988)
|||.|.|.|+- |.+||.+|+++||+|++|||+++ +.+.+.+.|+..++++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 47777777753 88999999999999999999987 556677789988899999999
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHH-HHHHHHHHhc--CCCceEec-CcccCCcccccC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFV-SQLERRLQFE--GKDLKLVD-APVSGGVKRASM 277 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~-~~l~~~l~~~--~~g~~~ld-apv~g~~~~a~~ 277 (988)
+||+||+|+|++..++.++ +++.++++++++|||+||++|... +.+.+.+... ..++++.+ +++.++ ..
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Ga----e~ 153 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIA---KNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGT----PQ 153 (342)
T ss_pred CCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccc----cc
Confidence 9999999999988789998 578889999999999999999987 6777777532 23555543 333333 44
Q ss_pred CCeEEEEeC--------CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 001973 278 GELTIMAAG--------TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRV 349 (988)
Q Consensus 278 g~l~~~~gg--------~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~ 349 (988)
+.+.++.++ +++.+++++++|+.+|++++++ +.|.++.+|+++|++.++..++.+|++.++++.|.++..
T Consensus 154 g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~--~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~ 231 (342)
T PRK12557 154 HGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVV--PADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKE 231 (342)
T ss_pred chheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEe--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 445666655 8999999999999999999774 479999999999999999999999999999999999988
Q ss_pred HHHHHH
Q 001973 350 LFNIIT 355 (988)
Q Consensus 350 ~~~~l~ 355 (988)
+.+-+.
T Consensus 232 ~~~~~~ 237 (342)
T PRK12557 232 MIEKQI 237 (342)
T ss_pred HHHHHH
Confidence 877444
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-19 Score=186.02 Aligned_cols=263 Identities=22% Similarity=0.265 Sum_probs=205.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc---C--CcccCCHHHHh---ccCcEEEEEcCChHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV---G--GLIANSPAEAA---KDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~---G--~~~~~s~~e~~---~~aDvV~l~vp~~~~~~ 217 (988)
.+.||+||++-||+.++.|.+.+||.|.+|||+.++++++.+. | +.-..|++|.+ +...+|++.|+....++
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD 85 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD 85 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence 4689999999999999999999999999999999999998764 2 23467888875 46789999999999899
Q ss_pred HHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHH
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSV 297 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 297 (988)
..+ +++.++|.+|++|||-.+.....+.+-.+.+.. +|+-|+.+-|+||.++++.|. ++|.||+++++..++++
T Consensus 86 ~~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k--~GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~i 159 (487)
T KOG2653|consen 86 QFI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAK--KGILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDI 159 (487)
T ss_pred HHH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHh--cCcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHH
Confidence 999 789999999999999988777766666777766 689999999999999999999 89999999999999999
Q ss_pred HHhcCCe-------EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHhcC---CCcccccc
Q 001973 298 LSALSEK-------LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLFNIITDSG---GSSWMFEN 366 (988)
Q Consensus 298 l~~~g~~-------v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~~~l~~~~---~~s~~~~~ 366 (988)
|..+..+ +.+ .|+-|+++.+||++|-+...-++.++|+..+.++ .|++.+++.+++.... .-|+..+.
T Consensus 160 fq~iaakv~~~epCc~w-vG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieI 238 (487)
T KOG2653|consen 160 FQKIAAKVSDGEPCCDW-VGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEI 238 (487)
T ss_pred HHHHHHHhcCCCCCeee-ecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHH
Confidence 9876432 445 4899999999999999999999999999999999 8899888888876542 34444433
Q ss_pred ccccccCCCCCCCchhhHHHHHH------HHHHHHHHhCCCCchHHH-HHHHHHHH
Q 001973 367 RVPHMLDNDYTPYSALDIFVKDM------GIIARECLSQRVPLHIST-IAHQLFLA 415 (988)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~~~kDl------~~~~~~a~~~gi~~pi~~-a~~~~~~~ 415 (988)
....+--.|-.+..-++....-. .+....|.++|+|.|++. ++...+-.
T Consensus 239 T~dIlk~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS 294 (487)
T KOG2653|consen 239 TADILKFKDEDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLS 294 (487)
T ss_pred hHHHhheeccCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 32221111111111122221111 266777889999988764 44433333
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=202.80 Aligned_cols=263 Identities=16% Similarity=0.104 Sum_probs=190.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-------------------cC-CcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-------------------VG-GLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-------------------~G-~~~~~s~~e~~~~aDvV 206 (988)
|||+|||+|.||.+||.+|+++||+|++||+++++.+.+.+ .| +..++++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 58999999999999999999999999999999998766532 13 56788999999999999
Q ss_pred EEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC
Q 001973 207 VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG 286 (988)
Q Consensus 207 ~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg 286 (988)
+.|+|+..+++..++ .++.+.++++ .+|++||+++..+ .+.+.+.. ++..+++.|+. |. ..+.++.+++|
T Consensus 85 ieavpe~~~vk~~l~--~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~--~~r~~~~hP~n--P~--~~~~Lvevv~g 154 (495)
T PRK07531 85 QESVPERLDLKRRVL--AEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTH--PERLFVAHPYN--PV--YLLPLVELVGG 154 (495)
T ss_pred EEcCcCCHHHHHHHH--HHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCC--cceEEEEecCC--Cc--ccCceEEEcCC
Confidence 999999988887665 3465556655 5677777776644 55665544 45677888865 22 34468888888
Q ss_pred C---HHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHhcCCCcc
Q 001973 287 T---EESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIAS-AAEAMAFGARLGLNTRVLFNIITDSGGSSW 362 (988)
Q Consensus 287 ~---~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~-~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~ 362 (988)
+ ++.+++++++++.+|++++++ + |.++|++.+-+..+ +.|++.++++.|++++++.+++..+.+.+|
T Consensus 155 ~~t~~e~~~~~~~~~~~lG~~~v~~-~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~ 225 (495)
T PRK07531 155 GKTSPETIRRAKEILREIGMKPVHI-A--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRW 225 (495)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEee-c--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc
Confidence 6 799999999999999998875 3 67888888877777 599999999999999999999999988877
Q ss_pred ccccccccccCCCCCC-CchhhHHHHHHHHHH-HHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHH
Q 001973 363 MFENRVPHMLDNDYTP-YSALDIFVKDMGIIA-RECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVK 431 (988)
Q Consensus 363 ~~~~~~~~~~~~~~~~-~~~l~~~~kDl~~~~-~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~ 431 (988)
....... ..|..+ ...+..+.+-++-.+ +...+.+-..++.....+.+....+.-++..++..+.+
T Consensus 226 ~~~Gpf~---~~dl~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (495)
T PRK07531 226 AQMGLFE---TYRIAGGEAGMRHFLAQFGPCLKWPWTKLMDVPDLDDALVDKIAGQSDAQSGGLSIRELER 293 (495)
T ss_pred cccchHH---HHHhcCcHHHHHHHHHHhchhhhhHHHhccCCCccCHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 6432211 111111 112333444444333 33466665566666666666666665566666555443
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-18 Score=185.62 Aligned_cols=243 Identities=18% Similarity=0.235 Sum_probs=175.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC----CeEEEEeCCh-hHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN----FTVIGYDVYR-PTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G----~~V~v~dr~~-~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
+.|||+|||+|+||.+|+++|.++| ++|++|||++ ++.+.+... |+..++++.++++++|+||+|||+.. +.+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~-~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKD-VAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHH-HHH
Confidence 3469999999999999999999998 8999999986 466777654 88888899999999999999999755 666
Q ss_pred HHccccchhhhCCCCCEEEec-CCCCHHHHHHHHHHHHhcCCCceEecCcccCCcc---cccCCCeEEEEeCC---HHHH
Q 001973 219 VLYGDLGAVSALSSGASIILS-STVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVK---RASMGELTIMAAGT---EESL 291 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~-st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~---~a~~g~l~~~~gg~---~~~~ 291 (988)
++ +++.+.+.++++||++ +++++++.+++. . . ++|+.+..+ .+..+.++++++++ ++.+
T Consensus 81 vl---~~l~~~~~~~~liIs~~aGi~~~~l~~~~---~---~-----~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~ 146 (279)
T PRK07679 81 AL---IPFKEYIHNNQLIISLLAGVSTHSIRNLL---Q---K-----DVPIIRAMPNTSAAILKSATAISPSKHATAEHI 146 (279)
T ss_pred HH---HHHHhhcCCCCEEEEECCCCCHHHHHHHc---C---C-----CCeEEEECCCHHHHHhcccEEEeeCCCCCHHHH
Confidence 66 5777777888999996 888877665532 1 1 245555533 45556677887776 5688
Q ss_pred HHHHHHHHhcCCeEEE-----E--eCCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHhcCCCc-c
Q 001973 292 KSTGSVLSALSEKLYV-----I--KGGCGAGSGVKMANQLLAGVHIASAAEAMA-FGARLGLNTRVLFNIITDSGGSS-W 362 (988)
Q Consensus 292 ~~~~~ll~~~g~~v~~-----~--~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~-la~~~Gid~~~~~~~l~~~~~~s-~ 362 (988)
+.++++|+.+|..++. . .+..|++.. + +..+.|++. .+++.|+|+++..+++..+...+ .
T Consensus 147 ~~v~~l~~~~G~~~~v~e~~~~~~~a~~Gsgpa-------~----~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~ 215 (279)
T PRK07679 147 QTAKALFETIGLVSVVEEEDMHAVTALSGSGPA-------Y----IYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAE 215 (279)
T ss_pred HHHHHHHHhCCcEEEeCHHHhhhHHHhhcCHHH-------H----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999986541 0 133343333 2 333444444 58999999999999998864332 3
Q ss_pred ccc--cccccccCCCC-CCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcC
Q 001973 363 MFE--NRVPHMLDNDY-TPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420 (988)
Q Consensus 363 ~~~--~~~~~~~~~~~-~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g 420 (988)
++. ...|..+.+++ +|+++.... ++..++.|+.--+.+++...++++.+-|
T Consensus 216 ~~~~~~~~~~~l~~~v~spgg~t~~g-------l~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 216 MLKASEKHPSILRKEITSPGGTTEAG-------IEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHhcCCCHHHHHHhcCCCchHHHHH-------HHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 333 45666777777 677774443 4445667877777788877777776643
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=195.20 Aligned_cols=191 Identities=18% Similarity=0.214 Sum_probs=152.5
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhcC-------------CcccCCHHHHh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTK-----------FQNVG-------------GLIANSPAEAA 200 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~G-------------~~~~~s~~e~~ 200 (988)
...+|||||+|.||..||.+|+.+||+|++||++++.+++ +.+.| ++.++++.+ +
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~ 84 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-L 84 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 3468999999999999999999999999999999998877 34555 466788866 5
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEE-EecCCCCHHHHHHHHHHHHh--cCCCceEec-CcccCCccccc
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASI-ILSSTVSPGFVSQLERRLQF--EGKDLKLVD-APVSGGVKRAS 276 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~iv-Id~st~~p~~~~~l~~~l~~--~~~g~~~ld-apv~g~~~~a~ 276 (988)
.+||+||.|+|++.+++..++ .++...++++.++ .|+||.++. +++..+.. +..|.||++ +|++
T Consensus 85 ~~aDlViEav~E~~~vK~~vf--~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~------- 152 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALF--AQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM------- 152 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC-------
Confidence 699999999999999999887 3466667788888 489999886 35444432 223889999 7776
Q ss_pred CCCeEEEEeC---CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 001973 277 MGELTIMAAG---TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNI 353 (988)
Q Consensus 277 ~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~ 353 (988)
.++.+++| +++.++.+.++++.+|+.++++.+.+| ++.|-+. ..+++|++.++++.|++++++.++
T Consensus 153 --~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll---~~~~~Ea~~l~~~g~~~~~~iD~a 221 (507)
T PRK08268 153 --KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAA---RPYYTEALRVLEEGVADPATIDAI 221 (507)
T ss_pred --eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHH
Confidence 47788875 899999999999999999988632357 3444333 247999999999999999999999
Q ss_pred HHhcCC
Q 001973 354 ITDSGG 359 (988)
Q Consensus 354 l~~~~~ 359 (988)
+..+.+
T Consensus 222 l~~~~G 227 (507)
T PRK08268 222 LREAAG 227 (507)
T ss_pred HHhcCC
Confidence 876544
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-18 Score=189.11 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=115.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
||||+++++++++++|++.+++++|||++.++++|+.++++||+++.+.+++.+++|+| |++++++||+++++++|++.
T Consensus 170 l~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~ 249 (292)
T PRK15059 170 VANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKAL 249 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhccc
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~ 120 (988)
|+++|+.+.+++.|+.+.+.|+|++|++++++++++..+..
T Consensus 250 g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~~~~ 290 (292)
T PRK15059 250 ALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHK 290 (292)
T ss_pred CCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999876654
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=180.08 Aligned_cols=242 Identities=19% Similarity=0.211 Sum_probs=172.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC----eEEEE-eCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF----TVIGY-DVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
|||+|||+|+||.+|+++|.++|| +|++| ||++++.+.+.+.|+..++++.++++++|+||+|+| +.++++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 589999999999999999999998 89999 999999999988899889999999999999999997 56699998
Q ss_pred cccchhhhCCCCCEEEecC-CCCHHHHHHHHHHHHhcCCCceEec-CcccCCcccccCCCeEEEE---eCCHHHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILSS-TVSPGFVSQLERRLQFEGKDLKLVD-APVSGGVKRASMGELTIMA---AGTEESLKSTGS 296 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~s-t~~p~~~~~l~~~l~~~~~g~~~ld-apv~g~~~~a~~g~l~~~~---gg~~~~~~~~~~ 296 (988)
.++.+.+.++++||..+ +...... .+.+.. .+++. .|..+... ......++ +++++.++.+++
T Consensus 79 --~~l~~~~~~~~~iIs~~~g~~~~~l---~~~~~~----~~vvr~mP~~~~~~---~~~~~~l~~~~~~~~~~~~~v~~ 146 (266)
T PLN02688 79 --TELRPLLSKDKLLVSVAAGITLADL---QEWAGG----RRVVRVMPNTPCLV---GEAASVMSLGPAATADDRDLVAT 146 (266)
T ss_pred --HHHHhhcCCCCEEEEecCCCcHHHH---HHHcCC----CCEEEECCCcHHHH---hCceEEEEeCCCCCHHHHHHHHH
Confidence 46777788889888764 4433332 233221 14553 45433322 22223333 347889999999
Q ss_pred HHHhcCCeEEEEe--------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccc-c-
Q 001973 297 VLSALSEKLYVIK--------GGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE-N- 366 (988)
Q Consensus 297 ll~~~g~~v~~~~--------g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~-~- 366 (988)
+|+.+|. ++++. +..|++.+ +.+.++.++.|+ +.+.|+|++++.+++..+...++.+. .
T Consensus 147 l~~~~G~-~~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~ 215 (266)
T PLN02688 147 LFGAVGK-IWVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLET 215 (266)
T ss_pred HHHhCCC-EEEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998 77741 22444444 345566677777 89999999999999988766555421 1
Q ss_pred -cccccc-CCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcC
Q 001973 367 -RVPHML-DNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420 (988)
Q Consensus 367 -~~~~~~-~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g 420 (988)
..|.-+ ..=.+|+.+ ....++..++.|++-.+.+++.+.++++.+.+
T Consensus 216 ~~~~~~l~~~v~spgG~-------t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 216 GKHPGQLKDMVTSPGGT-------TIAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred CCCHHHHHHhCCCCchH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 111111 111123322 24556777888999999999999999887753
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-17 Score=181.21 Aligned_cols=192 Identities=17% Similarity=0.175 Sum_probs=148.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc------------------------CCcccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV------------------------GGLIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~------------------------G~~~~~s~~e~~~~ 202 (988)
.||+|||+|.||..||.+|+++||+|++||++++.++++.+. +++.++++.+++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 489999999999999999999999999999999998776431 13457788899999
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEE-EecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeE
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASI-ILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELT 281 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~iv-Id~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~ 281 (988)
||+||+|+|++.+++..++ .++.+.+++++++ +++||.+|....+..+.. .+..|.||+ +|+.++ .++
T Consensus 82 aD~Vi~avpe~~~~k~~~~--~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~-~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVF--ETADAHAPAECYIATNTSTMSPTEIASFTKRP-ERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred CCEEEEeccCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCc-ccEEEEecC-CCcccC-------ceE
Confidence 9999999999988776665 4577778888866 789999987654433221 122477888 787654 588
Q ss_pred EEEeC---CHHHHHHHHHHHHhcCCeEEEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 282 IMAAG---TEESLKSTGSVLSALSEKLYVIKGG-CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 282 ~~~gg---~~~~~~~~~~ll~~~g~~v~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
.+++| +++.+++++++++.+|++++++ ++ +| ++.|-+ ....++|++.+.+..-.+++++...+..+
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg~~~v~v-~d~~G------f~~nRl---~~~~~~ea~~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMGKETVVV-NEFPG------FVTSRI---SALVGNEAFYMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeEEEe-cCccc------HHHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 89988 8999999999999999999885 44 44 333433 23468899999887557899998887654
Q ss_pred CC
Q 001973 358 GG 359 (988)
Q Consensus 358 ~~ 359 (988)
.+
T Consensus 221 ~g 222 (288)
T PRK09260 221 LN 222 (288)
T ss_pred CC
Confidence 43
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-18 Score=161.32 Aligned_cols=121 Identities=36% Similarity=0.629 Sum_probs=113.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccccccc-ccCCCCCCCchhhHHHHHHHH
Q 001973 313 GAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPH-MLDNDYTPYSALDIFVKDMGI 391 (988)
Q Consensus 313 g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~-~~~~~~~~~~~l~~~~kDl~~ 391 (988)
|+|+.+|+++|++...++.+++|++.++++.|+|+++++++++.+++.|+.++++.|. +..++|.++|+++.+.||+++
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 7899999999999999999999999999999999999999999999999999999985 889999999999999999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 001973 392 IARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433 (988)
Q Consensus 392 ~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~ 433 (988)
+.+++++.|+|+|+.+.+.++|+.+.++|+|++|+++++++|
T Consensus 81 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 81 ALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999986
|
... |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=180.08 Aligned_cols=274 Identities=11% Similarity=0.025 Sum_probs=192.7
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC-------CeEEEEeCChh-----HHHHHHhcC--------------CcccCCHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN-------FTVIGYDVYRP-----TLTKFQNVG--------------GLIANSPAE 198 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~G--------------~~~~~s~~e 198 (988)
..+||+|||.|+||+++|..|+++| |+|.+|.|+++ .++.+++.+ +.+++++.+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 3479999999999999999999998 89999999986 367776532 345788899
Q ss_pred HhccCcEEEEEcCChHHHHHHHccccchhh--hCCCCCEEEecCCCC-HHHH--HHHHHHHHhcC-CCceEecCcccCCc
Q 001973 199 AAKDVGVLVIMVTNEAQAESVLYGDLGAVS--ALSSGASIILSSTVS-PGFV--SQLERRLQFEG-KDLKLVDAPVSGGV 272 (988)
Q Consensus 199 ~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~--~l~~g~ivId~st~~-p~~~--~~l~~~l~~~~-~g~~~ldapv~g~~ 272 (988)
+++++|+|+++||+.. +++++ +.+.+ .+.++.++|.++.+. +.+- ..+.+.+.+.. ..+.++.+|-+...
T Consensus 90 av~~aDiIvlAVPsq~-l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A~E 165 (365)
T PTZ00345 90 AVEDADLLIFVIPHQF-LESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVAND 165 (365)
T ss_pred HHhcCCEEEEEcChHH-HHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHHHH
Confidence 9999999999999754 88888 56666 677777888776432 2221 23444444321 23344555554444
Q ss_pred ccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCC----------------cchHHHHHHHHHHHHHHHHHHHHHH
Q 001973 273 KRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGG----------------CGAGSGVKMANQLLAGVHIASAAEA 336 (988)
Q Consensus 273 ~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~----------------~g~a~~~Kl~~N~~~~~~~~~~~Ea 336 (988)
......+.+++++.+.+..+.++.+|+.--.+++...+- .|....+++..|+..+++..++.|+
T Consensus 166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em 245 (365)
T PTZ00345 166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEM 245 (365)
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 445556777888889999999999998755555552221 2555566678999999999999999
Q ss_pred HHHHHHcC--CCHHHHHHHHHhc----CCCcccccccccc--ccCCCCCCCchhh------------HHHHHHHHHHHHH
Q 001973 337 MAFGARLG--LNTRVLFNIITDS----GGSSWMFENRVPH--MLDNDYTPYSALD------------IFVKDMGIIAREC 396 (988)
Q Consensus 337 ~~la~~~G--id~~~~~~~l~~~----~~~s~~~~~~~~~--~~~~~~~~~~~l~------------~~~kDl~~~~~~a 396 (988)
.++++++| .++++++++..-| +++| ++|+.-+ +..+. .+.+++ +.......+.+++
T Consensus 246 ~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~--~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~ 321 (365)
T PTZ00345 246 KLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRN--GKKSWEEIEAELLNGQKLQGTVTLKEVYEVL 321 (365)
T ss_pred HHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccC--CCCCHHHHHHHhhCCcEechHHHHHHHHHHH
Confidence 99999997 4899999877665 3444 5555322 22211 012222 2344566788999
Q ss_pred HhCCC--CchHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 001973 397 LSQRV--PLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433 (988)
Q Consensus 397 ~~~gi--~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~ 433 (988)
+++++ ++|+++++++++. ++.+....++.+
T Consensus 322 ~~~~i~~~~Pi~~~vy~il~-------~~~~~~~~~~~l 353 (365)
T PTZ00345 322 ESHDLKKEFPLFTVTYKIAF-------EGADPSSLIDVL 353 (365)
T ss_pred HHcCCCCCCCHHHHHHHHHh-------CCCCHHHHHHHH
Confidence 99999 8999999999984 444444454444
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=180.54 Aligned_cols=268 Identities=13% Similarity=0.052 Sum_probs=188.1
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC---------------CcccCCHHHHhccCcEEEEE
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG---------------GLIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G---------------~~~~~s~~e~~~~aDvV~l~ 209 (988)
.+|||+|||+|+||+++|..|+++| .|++|.|+++..+.+++.+ +..++++.++++++|+||++
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 3579999999999999999999999 6889999999999888643 12456788889999999999
Q ss_pred cCChHHHHHHHccccchhhhCCCCCEEEecCCCCH-HHHHHHHHHHHhcC--CCceEecCcccCCcccccC---CC--eE
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSGASIILSSTVSP-GFVSQLERRLQFEG--KDLKLVDAPVSGGVKRASM---GE--LT 281 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p-~~~~~l~~~l~~~~--~g~~~ldapv~g~~~~a~~---g~--l~ 281 (988)
+|.. .+++++ +.+.+.+.+++++|.++.+-. ++.+.+.+.+.+.. .....+. +|..+.+ |. ..
T Consensus 85 vps~-~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~-----GP~~a~ev~~g~~t~~ 155 (341)
T PRK12439 85 VPSH-GFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILA-----GPNIAREVAEGYAAAA 155 (341)
T ss_pred eCHH-HHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEE-----CCCHHHHHHcCCCeEE
Confidence 9964 488888 678888888887777765433 32333334443311 1122333 3444332 33 34
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHcC
Q 001973 282 IMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKM-----------------ANQLLAGVHIASAAEAMAFGARLG 344 (988)
Q Consensus 282 ~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl-----------------~~N~~~~~~~~~~~Ea~~la~~~G 344 (988)
++.+.+++..+.++.+|+.-+.+++. ..++-..++.|. ..|...+++..++.|+.+++++.|
T Consensus 156 via~~~~~~~~~v~~lf~~~~~~v~~-s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G 234 (341)
T PRK12439 156 VLAMPDQHLATRLSPLFRTRRFRVYT-TDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMG 234 (341)
T ss_pred EEEeCCHHHHHHHHHHhCCCCEEEEE-cCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 55566778889999999988878776 466655555554 444555577788999999999999
Q ss_pred CCHHHHHHHHHhc----CCCccccccccccccCCCCCCCchh----------hHHHHHHHHHHHHHHhCCCCchHHHHHH
Q 001973 345 LNTRVLFNIITDS----GGSSWMFENRVPHMLDNDYTPYSAL----------DIFVKDMGIIARECLSQRVPLHISTIAH 410 (988)
Q Consensus 345 id~~~~~~~l~~~----~~~s~~~~~~~~~~~~~~~~~~~~l----------~~~~kDl~~~~~~a~~~gi~~pi~~a~~ 410 (988)
.++++++++..-+ +++|..++|+.-+.. +..+.++ -+...-...+.++++++++++|++++++
T Consensus 235 ~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~---l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~ 311 (341)
T PRK12439 235 GNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQ---LGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVD 311 (341)
T ss_pred CCcccccccchhhhhhhhccCCCCccHHHHHH---HHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 9999999877665 466666666532211 1111222 2345556788999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHH
Q 001973 411 QLFLAGSAAGWGRQDDAAVVKVY 433 (988)
Q Consensus 411 ~~~~~a~~~g~g~~d~~a~~~~~ 433 (988)
+++. ++.+...+++.+
T Consensus 312 ~il~-------~~~~~~~~~~~l 327 (341)
T PRK12439 312 AVIN-------HGSTVEQAYRGL 327 (341)
T ss_pred HHHh-------CCCCHHHHHHHH
Confidence 9984 455555555444
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=187.51 Aligned_cols=189 Identities=20% Similarity=0.224 Sum_probs=147.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhcC-------------CcccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF-----------QNVG-------------GLIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G-------------~~~~~s~~e~~~~ 202 (988)
.||+|||+|.||..||.+|+++||+|++||++++.+++. .+.| ++.++++++ +.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 589999999999999999999999999999999988653 3344 345778865 569
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEE-ecCCCCHHHHHHHHHHHH--hcCCCceEec-CcccCCcccccCC
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASII-LSSTVSPGFVSQLERRLQ--FEGKDLKLVD-APVSGGVKRASMG 278 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivI-d~st~~p~~~~~l~~~l~--~~~~g~~~ld-apv~g~~~~a~~g 278 (988)
||+||.|+|+..+++..++ ..+...++++.++. ++||.++. ++++.+. .+..|.||++ +|++
T Consensus 85 aDlVIEav~E~~~vK~~vf--~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~--------- 150 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALF--AQLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVM--------- 150 (503)
T ss_pred CCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccC---------
Confidence 9999999999999998887 34556666666655 56666654 3444442 2235889998 7776
Q ss_pred CeEEEEeC---CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 279 ELTIMAAG---TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 279 ~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
.++.+++| +++.++.+.++++.+|+.++++.+.+|. ++|+++. .+++|++.+.++.+++++++.+++.
T Consensus 151 ~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf-----i~Nrl~~----~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 151 ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF-----IVNRVAR----PYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc-----HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 37888888 8999999999999999999885323663 4444443 5799999999999999999999987
Q ss_pred hcCC
Q 001973 356 DSGG 359 (988)
Q Consensus 356 ~~~~ 359 (988)
.+.+
T Consensus 222 ~~~G 225 (503)
T TIGR02279 222 DGAG 225 (503)
T ss_pred hcCC
Confidence 6544
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=178.83 Aligned_cols=258 Identities=13% Similarity=0.053 Sum_probs=185.0
Q ss_pred eEEEEccchHHHHHHHHHHhCC--------CeEEEEeC-----ChhHHHHHHhc--------C------CcccCCHHHHh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSN--------FTVIGYDV-----YRPTLTKFQNV--------G------GLIANSPAEAA 200 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G--------~~V~v~dr-----~~~~~~~l~~~--------G------~~~~~s~~e~~ 200 (988)
||+|||.|+||+++|..|+.+| |+|++|.| +++..+.+++. | +++++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999999 55666666542 2 23567899999
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCC-CHH--HHHHHHHHHHhcC-CCceEecCcccCCccccc
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTV-SPG--FVSQLERRLQFEG-KDLKLVDAPVSGGVKRAS 276 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~-~p~--~~~~l~~~l~~~~-~g~~~ldapv~g~~~~a~ 276 (988)
+++|+||+++|+.. ++.++ +.+.+++.+++++|.++.+ .+. +...+.+.+.+.. ..+.++.+|.+.......
T Consensus 81 ~~ADiIIlAVPs~~-i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~Eva~~ 156 (342)
T TIGR03376 81 KGADILVFVIPHQF-LEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKE 156 (342)
T ss_pred hcCCEEEEECChHH-HHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHHHHcC
Confidence 99999999999855 88887 6788888888888888743 333 4345555554421 234445555555444455
Q ss_pred CCCeEEEEeCC----HHHHHHHHHHHHhcCCeEEEEeCC----------------cchHHHHHHHHHHHHHHHHHHHHHH
Q 001973 277 MGELTIMAAGT----EESLKSTGSVLSALSEKLYVIKGG----------------CGAGSGVKMANQLLAGVHIASAAEA 336 (988)
Q Consensus 277 ~g~l~~~~gg~----~~~~~~~~~ll~~~g~~v~~~~g~----------------~g~a~~~Kl~~N~~~~~~~~~~~Ea 336 (988)
..+.+++++.+ .+..+.++.+|+.--.+++...+- .|....+++..|+..+++..++.|+
T Consensus 157 ~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em 236 (342)
T TIGR03376 157 KFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEM 236 (342)
T ss_pred CCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 56667777778 788999999998655555542221 2555555678899999999999999
Q ss_pred HHHHHHcCCCHH--HHHHHHHhc----CCCccccccccccccCCCCCC-CchhhHHH------------HHHHHHHHHHH
Q 001973 337 MAFGARLGLNTR--VLFNIITDS----GGSSWMFENRVPHMLDNDYTP-YSALDIFV------------KDMGIIARECL 397 (988)
Q Consensus 337 ~~la~~~Gid~~--~~~~~l~~~----~~~s~~~~~~~~~~~~~~~~~-~~~l~~~~------------kDl~~~~~~a~ 397 (988)
.++++++|.+++ +++++..-+ +++| ++|+.-+ ..+.. +.+++... .-...+.++++
T Consensus 237 ~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G---~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~ 311 (342)
T TIGR03376 237 IKFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVG---RAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLK 311 (342)
T ss_pred HHHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHH---HHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHH
Confidence 999999999877 888766655 3444 4554221 11112 33344333 34467789999
Q ss_pred hCCCC--chHHHHHHHHHH
Q 001973 398 SQRVP--LHISTIAHQLFL 414 (988)
Q Consensus 398 ~~gi~--~pi~~a~~~~~~ 414 (988)
++++. +|+++++++++.
T Consensus 312 ~~~i~~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 312 NKNKDDEFPLFEAVYQILY 330 (342)
T ss_pred HcCCCcCCCHHHHHHHHHh
Confidence 99999 999999999985
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-17 Score=179.05 Aligned_cols=119 Identities=24% Similarity=0.326 Sum_probs=112.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhcccc-ccccCCCCc-chHHHHHHhHHHHHHHHHh
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIP-NLLRGDAKL-HFLNAFIQNLGIALDMAKT 78 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-~~~~~~~~~-f~l~l~~KDl~la~~~a~~ 78 (988)
|+||++.+.++++++|++.+++++|||++.++++|+.++++|+++..+.+ ++.++||++ |++++++||+++++++|++
T Consensus 172 l~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~ 251 (296)
T PRK15461 172 LINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQ 251 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhhHHHHHHHHHH
Confidence 58999999999999999999999999999999999999888888877765 899999999 9999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcc
Q 001973 79 LAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119 (988)
Q Consensus 79 ~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~ 119 (988)
.|+|+|+++++++.|+.+.++|+|++|++++++++++..|.
T Consensus 252 ~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 292 (296)
T PRK15461 252 LHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSAGL 292 (296)
T ss_pred cCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999887665
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=171.62 Aligned_cols=194 Identities=17% Similarity=0.212 Sum_probs=139.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----C--------------CcccCCHHHHhccCcEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----G--------------GLIANSPAEAAKDVGVL 206 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----G--------------~~~~~s~~e~~~~aDvV 206 (988)
.+||+|||+|.||.+||..|+++||+|++||+++++.+.+.+. | +..++++.+++++||+|
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV 83 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV 83 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence 4689999999999999999999999999999999888776541 2 24567888889999999
Q ss_pred EEEcCChHHH-HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc--CCCceEecCcccCCcccccCCCeEEE
Q 001973 207 VIMVTNEAQA-ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFE--GKDLKLVDAPVSGGVKRASMGELTIM 283 (988)
Q Consensus 207 ~l~vp~~~~~-~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~--~~g~~~ldapv~g~~~~a~~g~l~~~ 283 (988)
|+|+|...+. ..++ ..+.+.++++++|+ ++|.++. ...+++.+... ..+.|+.+.|.. +.++.+
T Consensus 84 i~av~~~~~~~~~v~---~~l~~~~~~~~ii~-s~tsg~~-~~~l~~~~~~~~~~ig~h~~~p~~~--------~~l~~i 150 (311)
T PRK06130 84 IEAVPEKLELKRDVF---ARLDGLCDPDTIFA-TNTSGLP-ITAIAQAVTRPERFVGTHFFTPADV--------IPLVEV 150 (311)
T ss_pred EEeccCcHHHHHHHH---HHHHHhCCCCcEEE-ECCCCCC-HHHHHhhcCCcccEEEEccCCCCcc--------CceEEE
Confidence 9999987654 4454 45555565665554 3333333 33555555321 113444443321 224455
Q ss_pred EeC---CHHHHHHHHHHHHhcCCeEEEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 284 AAG---TEESLKSTGSVLSALSEKLYVIKGG-CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 284 ~gg---~~~~~~~~~~ll~~~g~~v~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
+.+ +++.++.+.++++.+|++++++..+ +|. +++|++. ..++|++.++++.|++++++.+++..+.+
T Consensus 151 ~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~nr~~~----~~~~Ea~~l~~~g~~~~~~id~~~~~~~g 221 (311)
T PRK06130 151 VRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IANRIQH----ALAREAISLLEKGVASAEDIDEVVKWSLG 221 (311)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 554 6899999999999999988875323 454 6777754 56999999999999999999999987665
Q ss_pred Cc
Q 001973 360 SS 361 (988)
Q Consensus 360 ~s 361 (988)
..
T Consensus 222 ~~ 223 (311)
T PRK06130 222 IR 223 (311)
T ss_pred CC
Confidence 43
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.8e-16 Score=169.04 Aligned_cols=196 Identities=15% Similarity=0.152 Sum_probs=148.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhcCC-------------cccCCHHHHhc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTK-----------FQNVGG-------------LIANSPAEAAK 201 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~G~-------------~~~~s~~e~~~ 201 (988)
+.||||||+|.||..||..|+.+||+|++||++++..+. +.+.|. +.++++ +.++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~ 83 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA 83 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence 358999999999999999999999999999999998776 444443 257777 5589
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhC-CCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccCCcccccCCC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSAL-SSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSGGVKRASMGE 279 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l-~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g~~~~a~~g~ 279 (988)
+||+||.|+|...+++..++ ..+...+ +++++++..||..|.+........+++..|.||++ +|+++.. +
T Consensus 84 ~~d~ViEav~E~~~~K~~l~--~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv------E 155 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIF--AELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV------E 155 (286)
T ss_pred CCCEEEEecccCHHHHHHHH--HHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE------E
Confidence 99999999999999988887 3555556 78999999998888877655444444223788888 4555444 3
Q ss_pred eEEEEeCCHHHHHHHHHHHH-hcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 001973 280 LTIMAAGTEESLKSTGSVLS-ALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG 358 (988)
Q Consensus 280 l~~~~gg~~~~~~~~~~ll~-~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~ 358 (988)
++...+++++.++++.+++. .+|+.++++.+.+|. +.|-+ ....++|++.+.+..-.+++++..++..+.
T Consensus 156 lv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGf------i~nRi---~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~ 226 (286)
T PRK07819 156 LVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGF------VVNAL---LVPYLLSAIRMVESGFATAEDIDKAMVLGC 226 (286)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCCh------HHHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 44445689999999999988 599998875333552 33322 345689999998876678999998886554
Q ss_pred C
Q 001973 359 G 359 (988)
Q Consensus 359 ~ 359 (988)
+
T Consensus 227 G 227 (286)
T PRK07819 227 A 227 (286)
T ss_pred C
Confidence 4
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=170.02 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=142.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhcC-------------CcccCCHHHHhc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTK-----------FQNVG-------------GLIANSPAEAAK 201 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-----------l~~~G-------------~~~~~s~~e~~~ 201 (988)
.+||+|||+|.||.+||.+|+.+|++|++||+++++.+. +.+.| ....++ .++++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 82 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTN-LEELR 82 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCC-HHHhC
Confidence 468999999999999999999999999999999988753 33333 223344 46789
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEE-ecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCe
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASII-LSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivI-d~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
+||+||.|+|.+.+++..++ .++.+.++++++|+ ++|+.++....+.... +.+..++||.++|+.+ .+
T Consensus 83 ~aD~Vieav~e~~~~k~~v~--~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~-~~r~~g~h~~~pp~~~--------~l 151 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLF--SELDRICKPSAILASNTSSISITRLASATQR-PQQVIGMHFMNPPPIM--------KL 151 (295)
T ss_pred CCCEEEEcCccCHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCC-CcceEEEeccCCcccC--------ce
Confidence 99999999998888877765 45677788888886 7888877664443221 1122467888888653 33
Q ss_pred EEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 281 TIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 281 ~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
+.++. ++++.++.++++++.+|+.++++.+..| .++++++.. .++|++.+.+....+++++..++..+
T Consensus 152 veiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g-----~i~nri~~~----~~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 152 VEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG-----FIVNRILMP----MINEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc-----HHHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 44553 5889999999999999999887533344 244555543 48999999888778899998877654
Q ss_pred CC
Q 001973 358 GG 359 (988)
Q Consensus 358 ~~ 359 (988)
.+
T Consensus 223 ~g 224 (295)
T PLN02545 223 TN 224 (295)
T ss_pred cC
Confidence 43
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-14 Score=158.24 Aligned_cols=192 Identities=18% Similarity=0.281 Sum_probs=147.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHHHhcCCc-ccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQNVGGL-IANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~G~~-~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|||+|||+|.||..||.+|.++|+ +|++|||++++.+.+.+.|.. .+.++.++. ++|+||+|+|... +.+++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~--- 75 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL--- 75 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH---
Confidence 489999999999999999999996 799999999999988888864 455777765 5999999999876 44455
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCC----ccccc----CCCeEEEEe---CCHHHH
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGG----VKRAS----MGELTIMAA---GTEESL 291 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~----~~~a~----~g~l~~~~g---g~~~~~ 291 (988)
.++.+ ++++++|+|++++.+...+.+.+. .+..|+.+ |+.|+ |..+. .|..+++++ ++++.+
T Consensus 76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~-----~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~ 149 (275)
T PRK08507 76 PKLLD-IKENTTIIDLGSTKAKIIESVPKH-----IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQ 149 (275)
T ss_pred HHHhc-cCCCCEEEECccchHHHHHHHHHh-----cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHH
Confidence 46777 888999999999877766555443 12467877 98764 44433 577677775 467789
Q ss_pred HHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 292 KSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 292 ~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
+.++++|+.+|.+++++ ++.+....+++++++.. +...++.+++. .+.+.+.+.++..
T Consensus 150 ~~v~~l~~~~G~~~~~~-~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~~~~~~~~~~~~ 207 (275)
T PRK08507 150 ERAKEIFSGLGMRIVYM-DAKEHDLHAAYISHLPH-IISFALANTVL----KEEDERNIFDLAG 207 (275)
T ss_pred HHHHHHHHHhCCEEEEe-CHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hcCChHHHHhhcc
Confidence 99999999999999884 88899999999999875 44555555542 3666666655544
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=166.21 Aligned_cols=253 Identities=13% Similarity=0.136 Sum_probs=177.9
Q ss_pred HHHHHHhHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhhCcC-CCCCchhHHHHHHhhhcccccccccccccCchhhHH
Q 001973 62 LNAFIQNLGIALDMAKTL---AFPLPLLAVAHQQLILGLSHAH-ANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAK 137 (988)
Q Consensus 62 l~l~~KDl~la~~~a~~~---g~~~p~~~~~~~~~~~a~~~G~-g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 137 (988)
++++.|=++++.+.++-. |.|.--...-.+.++...+..- .+.|-..+-++|+..-......+...+.
T Consensus 20 v~Ll~~R~~~~~~ia~~K~~~~~~v~d~~Re~~vl~~~~~~~~~~~l~~~~~~~i~~~i~~~s~~~q~~~~~-------- 91 (374)
T PRK11199 20 LELLAKRLELVAQVGEVKSRHGLPIYVPEREAAMLASRRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGF-------- 91 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhHHhcc--------
Confidence 567777778888776653 4554444555555655544321 2233333334444333221111111111
Q ss_pred HhhhcCCCCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHH
Q 001973 138 QITAKSNSVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 138 ~~~m~~~~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
+..+...++|+||| +|.||..+|..|.++||+|++||++.. +++.+++++||+||+|+|....
T Consensus 92 --~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~~- 155 (374)
T PRK11199 92 --KTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHLT- 155 (374)
T ss_pred --cccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHHH-
Confidence 11122346999999 999999999999999999999998631 3567788899999999999774
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe-cCcccCCcccccCCCeEEEEeC-CHHHHHHH
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV-DAPVSGGVKRASMGELTIMAAG-TEESLKST 294 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l-dapv~g~~~~a~~g~l~~~~gg-~~~~~~~~ 294 (988)
..++ +++.+ ++++++|+|++|+++.....+.+... ..|+ ..|++|+......+..++++++ +++.++.+
T Consensus 156 ~~~~---~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~-----~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~ 226 (374)
T PRK11199 156 EEVI---ARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS-----GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWL 226 (374)
T ss_pred HHHH---HHHhC-CCCCcEEEECCCccHHHHHHHHHhCC-----CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHH
Confidence 5555 46666 88999999999999888777766432 2477 6688887666666777777776 56788999
Q ss_pred HHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 001973 295 GSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFN 352 (988)
Q Consensus 295 ~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~ 352 (988)
.++++.+|.++++ .++.++...+++++.+ .++.+++++..+++ .|.+.+.+.+
T Consensus 227 ~~l~~~lG~~v~~-~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 227 LEQIQVWGARLHR-ISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred HHHHHHCCCEEEE-CCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 9999999999988 4888999999998844 56777888888877 7888777654
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-15 Score=168.97 Aligned_cols=261 Identities=11% Similarity=0.043 Sum_probs=166.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC--C------------cccCCHHHHh-ccCcEEEEEcC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG--G------------LIANSPAEAA-KDVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G--~------------~~~~s~~e~~-~~aDvV~l~vp 211 (988)
|||+|||+|+||+.+|..|+++||+|++|+|+++.++.+++.+ . +.++++.+++ ..+|+||++||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 4899999999999999999999999999999999888887632 1 2345666766 58999999999
Q ss_pred ChHHHHHHHccccchhh-hCCCCCEEEecCCCC-HHH----HHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEe
Q 001973 212 NEAQAESVLYGDLGAVS-ALSSGASIILSSTVS-PGF----VSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAA 285 (988)
Q Consensus 212 ~~~~~~~vl~~~~~i~~-~l~~g~ivId~st~~-p~~----~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~g 285 (988)
+.. +++++ +.+.+ .+.+++.++.++++. ..+ .+.+.+.++. ..+..+.+|-..........+...+.+
T Consensus 81 s~~-~~~~l---~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~ 154 (326)
T PRK14620 81 TQQ-LRTIC---QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAG 154 (326)
T ss_pred HHH-HHHHH---HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEec
Confidence 855 77777 56776 777776565555443 211 2223333322 122233344211111111223345555
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCC--C
Q 001973 286 GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG-----------------VHIASAAEAMAFGARLGL--N 346 (988)
Q Consensus 286 g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~-----------------~~~~~~~Ea~~la~~~Gi--d 346 (988)
.+.+..+++..+|+.-+.+++. ..++-..++.|++-|.+.. ++..++.|+..++++.|. +
T Consensus 155 ~~~~~~~~l~~~l~~~~~~~~~-~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~ 233 (326)
T PRK14620 155 QNETLGSSLISKLSNENLKIIY-SQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSID 233 (326)
T ss_pred CCHHHHHHHHHHHCCCCeEEEe-cCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 6666677888888887777776 5788778888887776433 456778999999999997 7
Q ss_pred HHHHHHHHHhc----CCCcccccccccc--ccCC----CC-CCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 001973 347 TRVLFNIITDS----GGSSWMFENRVPH--MLDN----DY-TPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFL 414 (988)
Q Consensus 347 ~~~~~~~l~~~----~~~s~~~~~~~~~--~~~~----~~-~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~ 414 (988)
+++++++..-+ ++.+...+|+.-+ +..+ |. ...-+.-....-++.+.++++++|+++|+++.+++++.
T Consensus 234 ~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~~ 312 (326)
T PRK14620 234 LNTLIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLLY 312 (326)
T ss_pred cchhhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 88885322211 1222222332210 0000 00 00001112334556889999999999999999999873
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-15 Score=166.03 Aligned_cols=192 Identities=18% Similarity=0.171 Sum_probs=140.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------cC-------------CcccCCHHHHhc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------VG-------------GLIANSPAEAAK 201 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G-------------~~~~~s~~e~~~ 201 (988)
.+||+|||+|.||..||.+|+++|++|++||++++.++.+.+ .| +..+++++ .++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hhc
Confidence 468999999999999999999999999999999988776432 23 34566764 578
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEE-ecCCCCHHHHHHHHHHHHh--cCCCceEec-CcccCCcccccC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASII-LSSTVSPGFVSQLERRLQF--EGKDLKLVD-APVSGGVKRASM 277 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivI-d~st~~p~~~~~l~~~l~~--~~~g~~~ld-apv~g~~~~a~~ 277 (988)
+||+||+|+|+..+++..++ +++.+.++++++++ ++||..+. .+++.+.. +..+.||++ +|++....
T Consensus 83 ~aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~~~ve---- 153 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVMKLVE---- 153 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccCceEE----
Confidence 99999999999876655544 56778888898887 66666553 45555432 123677887 34442221
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 278 GELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 278 g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
+....+++++.++.+.++++.+|+.++++ ++.+ .+++++++.. .++|++.+.+..-.+++++..++..+
T Consensus 154 --i~~g~~t~~~~~~~~~~~~~~~gk~~v~~-~d~p----g~i~nRl~~~----~~~ea~~~~~~g~~~~~~iD~~~~~g 222 (292)
T PRK07530 154 --LIRGIATDEATFEAAKEFVTKLGKTITVA-EDFP----AFIVNRILLP----MINEAIYTLYEGVGSVEAIDTAMKLG 222 (292)
T ss_pred --EeCCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcC----ChHHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 11113588999999999999999998874 5544 5666777654 48899988887445889998887644
Q ss_pred C
Q 001973 358 G 358 (988)
Q Consensus 358 ~ 358 (988)
.
T Consensus 223 ~ 223 (292)
T PRK07530 223 A 223 (292)
T ss_pred C
Confidence 3
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-16 Score=170.85 Aligned_cols=113 Identities=28% Similarity=0.491 Sum_probs=106.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhcccc-------ccccCCCCc-chHHHHHHhHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIP-------NLLRGDAKL-HFLNAFIQNLGIA 72 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~-f~l~l~~KDl~la 72 (988)
|+||++.++++++++|++.+++++|+|++.++++++.++++||++..+.+ .+.++||++ |++.+++||++++
T Consensus 167 l~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~ 246 (288)
T TIGR01692 167 ICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLA 246 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHH
Confidence 68999999999999999999999999999999999999999998887655 347899999 9999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHH
Q 001973 73 LDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 73 ~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
.++|++.|+|+|+++.+.+.|+++.++|+|++|++++++++
T Consensus 247 ~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 247 QDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 99999999999999999999999999999999999999875
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=168.52 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=114.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
|+||++.++++.+++|++.+++++|+|++.+.++++.+.++||+++.+.+++.+++|+| |+++++.||++++++++++.
T Consensus 170 l~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~ 249 (291)
T TIGR01505 170 VANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAV 249 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcc
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~ 119 (988)
|+++|+.+.+++.|+.+.+.|+|++|++++++++++.++.
T Consensus 250 g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~~~~ 289 (291)
T TIGR01505 250 GANLPNTATVQELFNTLRANGGGQLDHSALVQALELLANH 289 (291)
T ss_pred CCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999886654
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.2e-14 Score=161.61 Aligned_cols=195 Identities=18% Similarity=0.257 Sum_probs=152.1
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHH-HhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF-QNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
|||+||| +|.||..+|..|.++|++|++|||++++..++ .+.|+..++++.+++.++|+||+|+|... +..++ +
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~-~~~vl---~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINV-TEDVI---K 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHH-HHHHH---H
Confidence 5899997 89999999999999999999999999886544 34577777888899999999999999865 56776 5
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCcccccCCCeEEEEeC---CHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKRASMGELTIMAAG---TEESLKSTGSVLSA 300 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~ 300 (988)
.+.+.++++++|+|++++.+.....+.+.++ .+..|+.+ |++|.......+...+++.+ +++.++.++++|+.
T Consensus 77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~---~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~ 153 (437)
T PRK08655 77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP---EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEK 153 (437)
T ss_pred HHHhhCCCCCEEEEcccccHHHHHHHHHhcC---CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 7788889999999999999888888887654 36788888 88876555566776777654 57788999999999
Q ss_pred cCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 001973 301 LSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNI 353 (988)
Q Consensus 301 ~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~ 353 (988)
+|.+++++ ++- +--+++.+.....++.+++.+..+ .+.|.+.+....+
T Consensus 154 ~G~~v~~~-~~e---~HD~~~a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~ 201 (437)
T PRK08655 154 EGARVIVT-SPE---EHDRIMSVVQGLTHFAYISIASTL-KRLGVDIKESRKF 201 (437)
T ss_pred cCCEEEEC-CHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhh
Confidence 99998874 333 334455555555555556655544 6679987776543
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.6e-15 Score=161.20 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=135.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc-ccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL-IANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~-~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|||+|||+|.||..+|..|.++|++|++||++++..+.+.+.|.. ...+..+.++++|+||+|+|... +..++ ++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~---~~ 76 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS---EQ 76 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH---HH
Confidence 489999999999999999999999999999999999988887753 23333457889999999999766 44555 57
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccCCc-cccc-------CCCeEEEE---eCCHHHHHH
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSGGV-KRAS-------MGELTIMA---AGTEESLKS 293 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g~~-~~a~-------~g~l~~~~---gg~~~~~~~ 293 (988)
+.+.++++.+|+|++++++...+.+.+.. ..|+. .|+.|++ .... .+...+++ .++++.++.
T Consensus 77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~~------~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~ 150 (279)
T PRK07417 77 LIPALPPEAIVTDVGSVKAPIVEAWEKLH------PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAI 150 (279)
T ss_pred HHHhCCCCcEEEeCcchHHHHHHHHHHhh------CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHH
Confidence 77888899999999999887766554322 24666 5888775 2332 23333333 357888999
Q ss_pred HHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHH
Q 001973 294 TGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIAS 332 (988)
Q Consensus 294 ~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~ 332 (988)
++++++.+|.++++ .++.+....+++++|+...+...+
T Consensus 151 v~~l~~~lG~~~v~-~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 151 VEELAVSLGSKIYT-ADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred HHHHHHHcCCEEEE-cCHHHHHHHHHHHcchHHHHHHHH
Confidence 99999999999887 488999999999998876654333
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=148.12 Aligned_cols=158 Identities=20% Similarity=0.236 Sum_probs=120.6
Q ss_pred CeEEEEccch--------------------HHHHHHHHHHhCCCeEEEEeCChhHH-----HHHHhcCCcccCCHHHHhc
Q 001973 147 TRVGFIGLGA--------------------MGFGMATHLLRSNFTVIGYDVYRPTL-----TKFQNVGGLIANSPAEAAK 201 (988)
Q Consensus 147 ~kIgiIG~G~--------------------mG~~lA~~L~~~G~~V~v~dr~~~~~-----~~l~~~G~~~~~s~~e~~~ 201 (988)
|||.|.|+|+ =|.+||.+|+++||+|++|||++++. +.+.+.|+..++++.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 4778888776 38899999999999999999987655 4588889999999999999
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHH-HHhcCCCceEecCcccCCcccccCCCe
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERR-LQFEGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~-l~~~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
++|+||+|+|++.++++++ +++.+++++|++|||+||++|.....+-+. ++-...++...+.. -++.+.......
T Consensus 81 ~ADVVIL~LPd~aaV~eVl---~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~H-P~~vP~~~~~~~ 156 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIA---RTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMH-PAAVPGTPQHGH 156 (341)
T ss_pred CCCEEEEecCCHHHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccC-CCCCCCCCCCce
Confidence 9999999999999999998 578899999999999999999988776554 33222333332221 122222222223
Q ss_pred EEEEe--------CCHHHHHHHHHHHHhcCCeEEEE
Q 001973 281 TIMAA--------GTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 281 ~~~~g--------g~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
.++.| .+++..+++.++.+..++..|.+
T Consensus 157 ~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 157 YVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred eeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 33333 26789999999999999998876
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-15 Score=164.42 Aligned_cols=119 Identities=22% Similarity=0.349 Sum_probs=115.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
|+||++.++++++++|++.++++.|+|++.+.++++.+.++|++++.+.+++.++||.+ |+++++.||+++++++|++.
T Consensus 173 l~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~ 252 (296)
T PRK11559 173 LANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGV 252 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcc
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~ 119 (988)
|+++|+.+.+.+.|+.+.+.|+|++|++++++++++.++.
T Consensus 253 g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~ 292 (296)
T PRK11559 253 GAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKLAKV 292 (296)
T ss_pred CCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999887765
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-14 Score=155.70 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=134.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-------------------------CCcccCCHHHHh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-------------------------GGLIANSPAEAA 200 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------------G~~~~~s~~e~~ 200 (988)
.+||+|||+|.||..||..|+.+|++|++||++++.++++.+. ++..++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 3689999999999999999999999999999999877665421 234578888999
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEE-ecCCCCHHHHHHHHHHHHh--cCCCceEecCcccCCcccccC
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASII-LSSTVSPGFVSQLERRLQF--EGKDLKLVDAPVSGGVKRASM 277 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivI-d~st~~p~~~~~l~~~l~~--~~~g~~~ldapv~g~~~~a~~ 277 (988)
++||+||.|+|+..+++..++ +++.+.++++++|+ ++||..+.. +++.+.. +..|.||.+.| ..
T Consensus 83 ~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~~~---~~~~~~~~~r~vg~Hf~~p~--------~~ 149 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLLPSQ---FAEATGRPEKFLALHFANEI--------WK 149 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCCHHH---HHhhcCCcccEEEEcCCCCC--------Cc
Confidence 999999999998765544433 56777788888885 455555543 3333221 11233432221 12
Q ss_pred CCeEEEE---eCCHHHHHHHHHHHHhcCCeEEEEe-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 001973 278 GELTIMA---AGTEESLKSTGSVLSALSEKLYVIK-GGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNI 353 (988)
Q Consensus 278 g~l~~~~---gg~~~~~~~~~~ll~~~g~~v~~~~-g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~ 353 (988)
..++.++ .++++.++.+.++++.+|+.++++. +.+|. +.|-+ ....++|++.+.+....+++++..+
T Consensus 150 ~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgf------i~nRi---~~~~~~ea~~l~~~g~a~~~~iD~a 220 (287)
T PRK08293 150 NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGY------ILNSL---LVPFLSAALALWAKGVADPETIDKT 220 (287)
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCH------hHHHH---HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 2334444 4678999999999999999877653 33442 22322 3346899999988877899999988
Q ss_pred HHhcCC
Q 001973 354 ITDSGG 359 (988)
Q Consensus 354 l~~~~~ 359 (988)
+..+.+
T Consensus 221 ~~~~~g 226 (287)
T PRK08293 221 WMIATG 226 (287)
T ss_pred HHhccC
Confidence 766554
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-13 Score=150.84 Aligned_cols=261 Identities=15% Similarity=0.114 Sum_probs=168.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------cC---------CcccCCHHHHhccCcE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------VG---------GLIANSPAEAAKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G---------~~~~~s~~e~~~~aDv 205 (988)
..||+|||+|.||..||.+|+.+||+|++||++++..+.+.+ .| +..++++++++++||+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 358999999999999999999999999999999887655322 22 3567789999999999
Q ss_pred EEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCCceEecCcccCCcccccCCCeEEE
Q 001973 206 LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF--EGKDLKLVDAPVSGGVKRASMGELTIM 283 (988)
Q Consensus 206 V~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~--~~~g~~~ldapv~g~~~~a~~g~l~~~ 283 (988)
|+.|+|...+++..++ .++.+.++++. |+.+||+ +-...++++.+.. +..+.||...|-.- .++-+
T Consensus 87 ViEavpE~l~vK~~lf--~~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~~p~R~~g~HffnP~~~~--------pLVEV 154 (321)
T PRK07066 87 IQESAPEREALKLELH--ERISRAAKPDA-IIASSTS-GLLPTDFYARATHPERCVVGHPFNPVYLL--------PLVEV 154 (321)
T ss_pred EEECCcCCHHHHHHHH--HHHHHhCCCCe-EEEECCC-ccCHHHHHHhcCCcccEEEEecCCccccC--------ceEEE
Confidence 9999999999888877 67777888877 5566655 3344455555432 11244555433211 23333
Q ss_pred Ee---CCHHHHHHHHHHHHhcCCeEEEEe-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 284 AA---GTEESLKSTGSVLSALSEKLYVIK-GGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 284 ~g---g~~~~~~~~~~ll~~~g~~v~~~~-g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
+. .+++.++.+..+++.+|+..+++. +.+| ++.|-+ ...+++|++.+.+....+++++..++..+.+
T Consensus 155 v~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pG------Fi~NRl---~~a~~~EA~~lv~eGvas~edID~a~~~g~g 225 (321)
T PRK07066 155 LGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPG------FIADRL---LEALWREALHLVNEGVATTGEIDDAIRFGAG 225 (321)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCcc------HHHHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 33 478999999999999999887752 3344 334433 3456999999999988999999999887776
Q ss_pred CccccccccccccCCCCCCC-chhhHHHHHHHHHH-HHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHH
Q 001973 360 SSWMFENRVPHMLDNDYTPY-SALDIFVKDMGIIA-RECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVK 431 (988)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~-~~l~~~~kDl~~~~-~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~ 431 (988)
..|...... ..-|..+. ..+..+.+.++-.. +...+.+. ..+.....+.+....+.-+|.+.+..+.+
T Consensus 226 ~r~~~~Gpf---~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (321)
T PRK07066 226 IRWSFMGTF---LTYTLAGGDAGMRHFMQQFGPALELPWTKLVA-PELTDALIDRVVEGTAEQQGPRSIKALER 295 (321)
T ss_pred CCccCcCHH---HHhhhcChHHHHHHHHHHhhhhhhHHHHhcCC-CcccHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 655322211 11111110 11233333333222 22344444 22444445544455554556565555543
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.4e-14 Score=154.91 Aligned_cols=193 Identities=16% Similarity=0.154 Sum_probs=139.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh--------------cCC-------------cccCCHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN--------------VGG-------------LIANSPAEA 199 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~--------------~G~-------------~~~~s~~e~ 199 (988)
.||+|||+|.||..||..|+++|++|++||++++.++...+ .|. ..+++. ++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 58999999999999999999999999999999988764321 121 234455 57
Q ss_pred hccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCCceEec-CcccCCccccc
Q 001973 200 AKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF--EGKDLKLVD-APVSGGVKRAS 276 (988)
Q Consensus 200 ~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~--~~~g~~~ld-apv~g~~~~a~ 276 (988)
+++||+||.|+|.+..++..++ +.+.+.++++++++..++.. ...++++.+.. +..+.||.+ +|+++..+ +.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE-v~ 157 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIE-VV 157 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEE-Ee
Confidence 7899999999999876555443 45677788888877544433 33455555532 123678887 56666543 33
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 001973 277 MGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITD 356 (988)
Q Consensus 277 ~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~ 356 (988)
.|.. .+++.++.+.++++.+|+.++++ ++.+.....|+++| .++|++.+.+..-.+++++..++..
T Consensus 158 ~g~~-----T~~e~~~~~~~~~~~lgk~~v~v-~d~pgfv~nRl~~~--------~~~ea~~~~~~g~a~~~~iD~~~~~ 223 (291)
T PRK06035 158 RAAL-----TSEETFNTTVELSKKIGKIPIEV-ADVPGFFTTRFIEG--------WLLEAIRSFEIGIATIKDIDEMCKL 223 (291)
T ss_pred CCCC-----CCHHHHHHHHHHHHHcCCeEEEe-CCCCCeeHHHHHHH--------HHHHHHHHHHcCCCCHHHHHHHHhh
Confidence 4442 38999999999999999999885 77776666666555 4678888887644689999988765
Q ss_pred cCC
Q 001973 357 SGG 359 (988)
Q Consensus 357 ~~~ 359 (988)
+.+
T Consensus 224 ~~g 226 (291)
T PRK06035 224 AFG 226 (291)
T ss_pred cCC
Confidence 443
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=152.84 Aligned_cols=254 Identities=15% Similarity=0.144 Sum_probs=165.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc-------------ccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL-------------IANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~-------------~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+|.||..+|..|+++||+|++|+| +++.+.+++.|.. ..++..++...+|+||+|+|+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 5899999999999999999999999999999 8888888876542 2345666668999999999986
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CCceEecCcccCCcccccCCCeEEEEeC----C
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG--KDLKLVDAPVSGGVKRASMGELTIMAAG----T 287 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~--~g~~~ldapv~g~~~~a~~g~l~~~~gg----~ 287 (988)
. +++++ +.+.+.+.++++|+.+.+. .+....+.+.++... .++.+..++..++-.-...+.-.+.+|. .
T Consensus 80 ~-~~~~~---~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 80 Q-LDAAI---PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred C-HHHHH---HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 5 67776 5677777788888776654 233445555554310 1233344443322111111222244443 2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCC
Q 001973 288 EESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG---------------------VHIASAAEAMAFGARLGLN 346 (988)
Q Consensus 288 ~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~---------------------~~~~~~~Ea~~la~~~Gid 346 (988)
.+..+.+..+|...+.++.. ..++-...|.|++.|...+ .+...+.|..+++++.|++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~-~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~ 233 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVL-SENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAP 233 (305)
T ss_pred CHHHHHHHHHHHhCCCCcee-cHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCC
Confidence 35666788888888876655 5788899999998886542 4456688999999999975
Q ss_pred --HHHHHHHHHhc---C--CCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 001973 347 --TRVLFNIITDS---G--GSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGS 417 (988)
Q Consensus 347 --~~~~~~~l~~~---~--~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~ 417 (988)
.+.+.+.+... . ..|.++... ..+... -++. =.+.++++++++|+++|..+.++++++...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~sSm~~D~----~~gr~t---Eid~---i~G~vv~~a~~~gv~~P~~~~l~~~~~~~~ 301 (305)
T PRK12921 234 LRDDVVEEIVKIFAGAPGDMKTSMLRDM----EKGRPL---EIDH---LQGVLLRRARAHGIPTPILDTVYALLKAYE 301 (305)
T ss_pred CChhHHHHHHHHHhccCCCCCcHHHHHH----HcCCcc---cHHH---HHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 33444433221 1 111111111 011001 0111 124789999999999999999999987654
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=142.27 Aligned_cols=247 Identities=15% Similarity=0.145 Sum_probs=181.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhc-------------------CCcccCCHHHHhccCcE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNV-------------------GGLIANSPAEAAKDVGV 205 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~-------------------G~~~~~s~~e~~~~aDv 205 (988)
+||.-||+|++|.+....++-+- .+|++.|.+..++...+.. +.-+.++.+.+++++|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 69999999999999988887654 4799999999888775542 23367899999999999
Q ss_pred EEEEcCChH-----------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceE--ecCcccCCc
Q 001973 206 LVIMVTNEA-----------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKL--VDAPVSGGV 272 (988)
Q Consensus 206 V~l~vp~~~-----------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~--ldapv~g~~ 272 (988)
||++|.+|. +++.+-....-+.+.....++++..||++...++.+...+....+|++| ++.|.+-..
T Consensus 82 vfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpeflae 161 (481)
T KOG2666|consen 82 VFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLAE 161 (481)
T ss_pred EEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhcc
Confidence 999998874 2222211113455556678999999999999999999988643345544 555543322
Q ss_pred ccccC---CCeEEEEeCCH-----HHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 001973 273 KRASM---GELTIMAAGTE-----ESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLG 344 (988)
Q Consensus 273 ~~a~~---g~l~~~~gg~~-----~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~G 344 (988)
..+.. ..-.+++||.+ .+.+.+..+++.+-.+-..++.+.-+++.-|++.|.+.+--+..++-+.++|++.|
T Consensus 162 gtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatg 241 (481)
T KOG2666|consen 162 GTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATG 241 (481)
T ss_pred cchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 22111 11237777753 35666677777776443333468899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCC
Q 001973 345 LNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVP 402 (988)
Q Consensus 345 id~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~ 402 (988)
.|..++...++..+. .++.+++. ..||.-+++.||+-.++-+++.+|+|
T Consensus 242 adv~eva~avg~d~r-------ig~kfl~a--svgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 242 ADVSEVAYAVGTDSR-------IGSKFLNA--SVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred CCHHHHHHHhccccc-------ccHHHhhc--ccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 999999887765432 22334433 34677889999999999999999876
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-13 Score=151.12 Aligned_cols=252 Identities=15% Similarity=0.155 Sum_probs=162.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-----------cCCHHHHhccCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-----------ANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-----------~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
|||+|||+|.||+.+|..|+++||+|++|+|++++.+.+.+.|... ++++.++ +.+|+||+|+|...
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~- 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQ- 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccccc-
Confidence 5899999999999999999999999999999999988888777532 4556555 89999999999765
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CCceEecCcccC--CcccccCCCeEEEEeC---CH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG--KDLKLVDAPVSG--GVKRASMGELTIMAAG---TE 288 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~--~g~~~ldapv~g--~~~~a~~g~l~~~~gg---~~ 288 (988)
++.++ +.+.+.+.++++||.+.++ .+..+.+.+.+.... .+..+..+-..+ .......+. +.+|. ..
T Consensus 79 ~~~~~---~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~--~~ig~~~~~~ 152 (304)
T PRK06522 79 LPAAL---PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGR--LKIGEPDGES 152 (304)
T ss_pred HHHHH---HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCC--EEEeCCCCCc
Confidence 67777 5677777777788877664 333344444443210 011111111111 111222233 33332 22
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCC-
Q 001973 289 ESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG---------------------VHIASAAEAMAFGARLGLN- 346 (988)
Q Consensus 289 ~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~---------------------~~~~~~~Ea~~la~~~Gid- 346 (988)
+..+.+.++|+..+.++.. ..++-...|.|++.|...+ .+...+.|+..++++.|++
T Consensus 153 ~~~~~l~~~l~~~~~~~~~-~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~ 231 (304)
T PRK06522 153 AAAEALADLLNAAGLDVEW-SPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHL 231 (304)
T ss_pred HHHHHHHHHHHhcCCCCCC-ChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3467788888888877655 5788889999998775432 3445688999999999975
Q ss_pred -HHHHHHHHHhcC-----CCcccccc-ccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 347 -TRVLFNIITDSG-----GSSWMFEN-RVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 347 -~~~~~~~l~~~~-----~~s~~~~~-~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
.+.+.+.+.... ..|.++.. ...+...-++ =.++++++++++|+++|..+.++++++...+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~sSm~~D~~~gr~tEid~-----------i~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~ 299 (304)
T PRK06522 232 SVEEVREYVRQVIQKTAANTSSMLQDLEAGRPTEIDA-----------IVGYVLRRGRKHGIPTPLNDALYGLLKAKES 299 (304)
T ss_pred ChHHHHHHHHHHhhccCCCCchHHHHHHcCCCcccch-----------hccHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 344444333211 11111111 1111111111 1257899999999999999999998876654
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-13 Score=145.95 Aligned_cols=252 Identities=19% Similarity=0.186 Sum_probs=162.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC---CeEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN---FTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
||||+|||+|.||..++..|.++| ++|.+|||++++.+.+.+. |+...++..+++.++|+||+|+|... +++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~-~~~v~- 79 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQV-MEEVL- 79 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHH-HHHHH-
Confidence 368999999999999999999999 7899999999999888875 77788888888999999999999754 77777
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEe--CCHHHHHHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAA--GTEESLKSTGSVLS 299 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~g--g~~~~~~~~~~ll~ 299 (988)
+.+.+.+ +++||.+++..+. ..+.+.++ .+.+++.+ +...|.....+...+..+ ++++.++.++.+|+
T Consensus 80 --~~l~~~~--~~~vvs~~~gi~~--~~l~~~~~---~~~~iv~~-~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~ 149 (267)
T PRK11880 80 --SELKGQL--DKLVVSIAAGVTL--ARLERLLG---ADLPVVRA-MPNTPALVGAGMTALTANALVSAEDRELVENLLS 149 (267)
T ss_pred --HHHHhhc--CCEEEEecCCCCH--HHHHHhcC---CCCcEEEe-cCCchHHHcCceEEEecCCCCCHHHHHHHHHHHH
Confidence 4566655 5677777765543 23444443 23444443 112233334444334444 37889999999999
Q ss_pred hcCCeEEEEeCCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccc--ccccc-CC
Q 001973 300 ALSEKLYVIKGGCGAGSGVK-MANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG-GSSWMFENR--VPHML-DN 374 (988)
Q Consensus 300 ~~g~~v~~~~g~~g~a~~~K-l~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~-~~s~~~~~~--~~~~~-~~ 374 (988)
.+|..+ ++ .+...-...= +..+ .-+....++..+...+.+.|+++++..+++.... +...++... .+.-+ ..
T Consensus 150 ~lG~~~-~~-~~e~~~d~~~a~~~~-~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 226 (267)
T PRK11880 150 AFGKVV-WV-DDEKQMDAVTAVSGS-GPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDN 226 (267)
T ss_pred hCCeEE-EE-CChHhcchHHHHhcC-hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 999754 43 2222111111 1111 1112223344444557889999999888777653 221121110 11111 11
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc
Q 001973 375 DYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419 (988)
Q Consensus 375 ~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~ 419 (988)
=.+|+.+ ....++..++.|++-.+.+++.+.++++.+-
T Consensus 227 v~tpgG~-------t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~ 264 (267)
T PRK11880 227 VTSPGGT-------TIAALRVLEEKGLRAAVIEAVQAAAKRSKEL 264 (267)
T ss_pred CCCCcHH-------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 1123222 2455677788899999999999999988875
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=147.43 Aligned_cols=239 Identities=15% Similarity=0.083 Sum_probs=154.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCe---EEEEeCChhHHHHHHhc--CCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFT---VIGYDVYRPTLTKFQNV--GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~--G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
|||||||+|+||.+|++.|.+.|++ +.+|||++++.+++.+. +...++++.++++++|+||+|+| +..+.+++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl- 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL- 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 4899999999999999999999864 58999999999888775 46778899999999999999999 56678887
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhc
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSAL 301 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~ 301 (988)
+.+ .+.++++||+++. +.+...+.+.+.. ....+...|. +..+.....+.++.++ +.++++|+.+
T Consensus 79 --~~l--~~~~~~~vis~~a--g~~~~~l~~~~~~--~~~~~r~~P~---~~~a~~~g~t~~~~~~----~~~~~l~~~l 143 (258)
T PRK06476 79 --RAL--RFRPGQTVISVIA--ATDRAALLEWIGH--DVKLVRAIPL---PFVAERKGVTAIYPPD----PFVAALFDAL 143 (258)
T ss_pred --HHh--ccCCCCEEEEECC--CCCHHHHHHHhCC--CCCEEEECCC---ChhhhCCCCeEecCCH----HHHHHHHHhc
Confidence 333 2467888887654 3445556665543 1234555665 2233333445555543 5789999999
Q ss_pred CCeEEEEeCCcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-Cccc-ccc--cccccc
Q 001973 302 SEKLYVIKGGCGAGSGVKMANQL-----LAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG-SSWM-FEN--RVPHML 372 (988)
Q Consensus 302 g~~v~~~~g~~g~a~~~Kl~~N~-----~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~-~s~~-~~~--~~~~~~ 372 (988)
|..++. ++. |..+++ ..+....++.++..++++.|+++++..+++..... ...+ ... ..|.-+
T Consensus 144 G~~~~~--~~e------~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l 215 (258)
T PRK06476 144 GTAVEC--DSE------EEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSAL 215 (258)
T ss_pred CCcEEE--CCh------HhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 987664 222 222222 33444457888889999999999999998876532 2222 111 111111
Q ss_pred CCC-CCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 001973 373 DND-YTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGS 417 (988)
Q Consensus 373 ~~~-~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~ 417 (988)
... .+|+.+. ...++..++.|+.-.+.+++...++++.
T Consensus 216 ~~~v~spgGtT-------~~gl~~le~~~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 216 SREFSTKGGLN-------EQVLNDFSRQGGYAALTDALDRVLRRIN 254 (258)
T ss_pred HHhCCCCCchH-------HHHHHHHHHCChHHHHHHHHHHHHHHhh
Confidence 111 2344332 2334455566766556655555555443
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-13 Score=145.28 Aligned_cols=251 Identities=15% Similarity=0.179 Sum_probs=159.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC----eEEEEeCChhHHHHHHh-cCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF----TVIGYDVYRPTLTKFQN-VGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~-~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+||+|||+|+||.+|+..|.++|+ +|++|||++++.+.+.+ .|+..+++..+++++||+||+|||+ +++++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 589999999999999999999885 69999999999988875 6877788898999999999999995 7799988
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC--CHHHHHHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG--TEESLKSTGSVLS 299 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~ 299 (988)
+++.+.++++++||+.-.+.+- ..+.+.+.. ..+++-. +-..+.....|...+..+. +++..+.++.+|+
T Consensus 81 --~~l~~~~~~~~lvISi~AGi~i--~~l~~~l~~---~~~vvR~-MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~ 152 (272)
T PRK12491 81 --NQIKDQIKNDVIVVTIAAGKSI--KSTENEFDR---KLKVIRV-MPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFN 152 (272)
T ss_pred --HHHHHhhcCCcEEEEeCCCCcH--HHHHHhcCC---CCcEEEE-CCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 5777778888899987654332 233444421 1122211 1122333444543333332 4566788999999
Q ss_pred hcCCeEEEEeC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCcccccc--ccccccCCC
Q 001973 300 ALSEKLYVIKG-GCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG-GSSWMFEN--RVPHMLDND 375 (988)
Q Consensus 300 ~~g~~v~~~~g-~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~-~~s~~~~~--~~~~~~~~~ 375 (988)
.+|..+ .+.. ......++=-+.-.+.+.++..+. ..+.+.|++.++..+++.+.. |...++.. ..|.-+...
T Consensus 153 ~~G~~~-~~~E~~~d~~talsgsgPAf~~~~~eal~---~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~ 228 (272)
T PRK12491 153 IFGQTE-VVNEKLMDVVTSISGSSPAYVYMFIEAMA---DAAVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDM 228 (272)
T ss_pred cCCCEE-EEcHHHhhhHHHhccCcHHHHHHHHHHHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 999864 4311 111122211112223333333333 448889999999999887754 22222211 111111111
Q ss_pred -CCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 376 -YTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 376 -~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
.+|+.+. ...++..++.|+.--+.+++...++++.+
T Consensus 229 V~sPGGtT-------~~gl~~le~~~~~~~~~~av~aa~~r~~e 265 (272)
T PRK12491 229 VCSPGGTT-------IEAVATLEEKGLRTAIISAMKRCTQKSME 265 (272)
T ss_pred CCCCchHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHH
Confidence 2344432 23455566788888888888888777765
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-14 Score=145.58 Aligned_cols=147 Identities=24% Similarity=0.333 Sum_probs=97.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--------------------CCcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--------------------GGLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------------------G~~~~~s~~e~~~~aDvV 206 (988)
|||+|||+|++|.++|..|+++||+|++||.++++++.+++. +..++++..+++.++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 699999999999999999999999999999999999998763 134678889999999999
Q ss_pred EEEcCChH---------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc-C---CCceEecCcccCCcc
Q 001973 207 VIMVTNEA---------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFE-G---KDLKLVDAPVSGGVK 273 (988)
Q Consensus 207 ~l~vp~~~---------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~-~---~g~~~ldapv~g~~~ 273 (988)
|+|||+|. .++.++ +.+.++++++++||..||+.|++++++...+-++ . .++++..+|.+-.+.
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G 157 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG 157 (185)
T ss_dssp EE----EBETTTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred EEecCCCccccCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence 99999874 355555 6888999999999999999999999665444332 2 245667777554443
Q ss_pred cccC---CCeEEEEeCCHHHHH-HHHH
Q 001973 274 RASM---GELTIMAAGTEESLK-STGS 296 (988)
Q Consensus 274 ~a~~---g~l~~~~gg~~~~~~-~~~~ 296 (988)
.+.. ..-.++.|.+++..+ .+++
T Consensus 158 ~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 158 RAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp SHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 3221 112355565554333 4444
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-13 Score=149.63 Aligned_cols=258 Identities=14% Similarity=0.082 Sum_probs=159.3
Q ss_pred CCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------------cCCHHHHhccCcEEEEE
Q 001973 143 SNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------------ANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------------~~s~~e~~~~aDvV~l~ 209 (988)
+++.|||+|||+|.||+.+|..|+++||+|++|.|++. +.+...|... ..+..+....+|+||+|
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vila 79 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVG 79 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEE
Confidence 45568999999999999999999999999999999863 4455555321 11122345689999999
Q ss_pred cCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CCceEecCcccCCc--ccccCCCeEEE-E
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG--KDLKLVDAPVSGGV--KRASMGELTIM-A 284 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~--~g~~~ldapv~g~~--~~a~~g~l~~~-~ 284 (988)
||..+ +.+++ +.+.+.+.++.+|+...++ .+..+.+.+.++... .++.++.+...+.. .....|.+.+- .
T Consensus 80 vK~~~-~~~~~---~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~ 154 (313)
T PRK06249 80 LKTTA-NALLA---PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYH 154 (313)
T ss_pred ecCCC-hHhHH---HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecC
Confidence 99876 45565 4566667777777766554 344455666554310 12222222222211 11222332211 1
Q ss_pred eC-C-----HHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 001973 285 AG-T-----EESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG---------------------VHIASAAEAM 337 (988)
Q Consensus 285 gg-~-----~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~---------------------~~~~~~~Ea~ 337 (988)
.+ + .+..+.+..+|+..+.++.. ..++....|.|++.|...+ .....+.|+.
T Consensus 155 ~~~~~~~~~~~~~~~l~~~l~~ag~~~~~-~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~ 233 (313)
T PRK06249 155 SGPAADDGITARVEEGAALFRAAGIDSQA-MPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVI 233 (313)
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCCcee-CchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHH
Confidence 22 2 35667788889888877665 5899999999998775433 4445588999
Q ss_pred HHHHHcCCC--H---HHHHHHHHhcCC-CccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 001973 338 AFGARLGLN--T---RVLFNIITDSGG-SSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQ 411 (988)
Q Consensus 338 ~la~~~Gid--~---~~~~~~l~~~~~-~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~ 411 (988)
.++++.|++ . +.+.++...... .|.++. |+..+.. .++-.=.+.++++++++|+++|..+.++.
T Consensus 234 ~va~a~Gi~~~~~~~~~~~~~~~~~~~~~sSM~q---------D~~~gr~-tEid~i~G~vv~~a~~~Gi~~P~~~~l~~ 303 (313)
T PRK06249 234 QGAAACGHTLPEGYADHMLAVTERMPDYRPSMYH---------DFEEGRP-LELEAIYANPLAAARAAGCAMPRVEMLYQ 303 (313)
T ss_pred HHHHhcCCCCChhHHHHHHHHhhcCCCCCChHHH---------HHHCCCc-ccHHHHhhHHHHHHHHhCCCCcHHHHHHH
Confidence 999999986 2 222332222110 111111 1111100 00111135889999999999999999999
Q ss_pred HHHHHHH
Q 001973 412 LFLAGSA 418 (988)
Q Consensus 412 ~~~~a~~ 418 (988)
+++....
T Consensus 304 ~l~~~e~ 310 (313)
T PRK06249 304 ALEFLDR 310 (313)
T ss_pred HHHHHHh
Confidence 8876543
|
|
| >COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-14 Score=151.86 Aligned_cols=64 Identities=39% Similarity=0.518 Sum_probs=60.5
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC-HHHHHh
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY-ITLVTS 982 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~-~~~~~~ 982 (988)
||||++++||++|++++||||||||+|+|+++||++||++.+||||||+|+++.+|+| .+++..
T Consensus 1 m~lv~~~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~ 65 (286)
T COG0191 1 MALVSMKELLDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAH 65 (286)
T ss_pred CccccHHHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999998 565543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=145.25 Aligned_cols=194 Identities=15% Similarity=0.169 Sum_probs=133.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHH-----------HHHhcC-------------CcccCCHHHHhc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLT-----------KFQNVG-------------GLIANSPAEAAK 201 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~-----------~l~~~G-------------~~~~~s~~e~~~ 201 (988)
++||+|||+|.||..+|..|+++|++|++||+++++++ .+.+.| +..+++.+ .++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~ 81 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLK 81 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence 35899999999999999999999999999999999875 334444 23356665 478
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCCceEec-CcccCCcccccCC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF--EGKDLKLVD-APVSGGVKRASMG 278 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~--~~~g~~~ld-apv~g~~~~a~~g 278 (988)
+||+||+|+|....++..++ +.+.+.++++++++. +|++.... .+++.+.. +..+.||.. +++..... ...+
T Consensus 82 ~aDlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s-~ts~~~~~-~la~~~~~~~r~ig~h~~~P~~~~~~ve-v~~g 156 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIF--AQLDEIAKPEAILAT-NTSSLSIT-ELAAATKRPDKVIGMHFFNPVPVMKLVE-IIRG 156 (282)
T ss_pred cCCeeeecccccHHHHHHHH--HHHHhhCCCCcEEEE-CCCCCCHH-HHHHhhCCCcceEEeeccCCcccCccEE-EeCC
Confidence 99999999988766664333 567788888887743 33333332 55555532 223556655 33333332 1111
Q ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 001973 279 ELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG 358 (988)
Q Consensus 279 ~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~ 358 (988)
.+++++.++.+.++++.+|+.++++....| .+.|- +....++|++.+.+..-.+++++..++..+.
T Consensus 157 -----~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g------~i~~R---i~~~~~~ea~~~~~~gv~~~~diD~~~~~g~ 222 (282)
T PRK05808 157 -----LATSDATHEAVEALAKKIGKTPVEVKNAPG------FVVNR---ILIPMINEAIFVLAEGVATAEDIDEGMKLGC 222 (282)
T ss_pred -----CCCCHHHHHHHHHHHHHcCCeeEEecCccC------hHHHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 246899999999999999999887522333 23332 2345689999998876678999988876544
Q ss_pred C
Q 001973 359 G 359 (988)
Q Consensus 359 ~ 359 (988)
+
T Consensus 223 g 223 (282)
T PRK05808 223 N 223 (282)
T ss_pred C
Confidence 3
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=144.07 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=133.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC----eEEEEeCChhHHHHHHhc--CCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF----TVIGYDVYRPTLTKFQNV--GGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~--G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
|+|+|||+|+||.+++..|.++|+ +|++|||++++.+.+.+. |+..+.++.+++..+|+||+|+|+ ..+++++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence 489999999999999999999994 799999999998887764 677788899989999999999985 5588887
Q ss_pred ccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEe--CCHHHHHHHHHHH
Q 001973 221 YGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAA--GTEESLKSTGSVL 298 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~g--g~~~~~~~~~~ll 298 (988)
+++.+++.++++||++++.. ....+.+.+.. ..++++.+ .+..+..|...++.+ .+++.++.++++|
T Consensus 80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~--~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll 148 (273)
T PRK07680 80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPC--QVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLERLF 148 (273)
T ss_pred ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCC--CEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHHHHH
Confidence 57778888889999998754 34455555432 22334432 233455677555555 3567788999999
Q ss_pred HhcCCeEEEEeCCcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 299 SALSEKLYVIKGGCGAGSG-VKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 299 ~~~g~~v~~~~g~~g~a~~-~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
+.+|..+ ++..+...+.. +=-+.-.+...++.++.++. .++.|+++++..+++...
T Consensus 149 ~~~G~~~-~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 149 SNISTPL-VIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEM 205 (273)
T ss_pred HcCCCEE-EEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHH
Confidence 9999654 44322111110 00011123333333333332 234899999988877665
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-13 Score=148.28 Aligned_cols=247 Identities=17% Similarity=0.090 Sum_probs=161.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhH-------HHH-----------HHhcC-------------CcccCC--HHHHhccC
Q 001973 157 MGFGMATHLLRSNFTVIGYDVYRPT-------LTK-----------FQNVG-------------GLIANS--PAEAAKDV 203 (988)
Q Consensus 157 mG~~lA~~L~~~G~~V~v~dr~~~~-------~~~-----------l~~~G-------------~~~~~s--~~e~~~~a 203 (988)
||..||..++.+|++|++||++++. ++. +.+.| ++.+++ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 8999999999999999999999842 111 22222 223433 67889999
Q ss_pred cEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCCCeE
Q 001973 204 GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMGELT 281 (988)
Q Consensus 204 DvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g~l~ 281 (988)
|+||.|+|...+++..++ .++.+.+++++++ +||+++-...++++.+. ++..|.||++.|..-.......+.
T Consensus 81 D~ViEav~E~~~~K~~~f--~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~-- 154 (314)
T PRK08269 81 DLVFEAVPEVLDAKREAL--RWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD-- 154 (314)
T ss_pred CEEEECCcCCHHHHHHHH--HHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC--
Confidence 999999999999999887 4577888888888 46666666667777663 233578999888322221111111
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc
Q 001973 282 IMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSS 361 (988)
Q Consensus 282 ~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s 361 (988)
+++++.++++.+++..+|++++++ ++.+ + +++..+...+++|++.++++.|++++++.+++..+.+..
T Consensus 155 ---~t~~e~~~~~~~ll~~lGk~~v~v-~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~ 222 (314)
T PRK08269 155 ---ATDPAVVDRLAALLERIGKVPVVC-GPSP-G-------YIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLR 222 (314)
T ss_pred ---CCCHHHHHHHHHHHHHcCCcEEEe-cCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCC
Confidence 578999999999999999999885 6544 2 234455677899999999999999999999988766533
Q ss_pred cccccccccccCCCCCCCchhhHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHcCCCCCChH
Q 001973 362 WMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLS-QRVPLHISTIAHQLFLAGSAAGWGRQDDA 427 (988)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~-~gi~~pi~~a~~~~~~~a~~~g~g~~d~~ 427 (988)
+... +|- .--|+ ..++....-++.+.+...+ .--+.|++....+--+...+.|.|.+||.
T Consensus 223 ~~~~--Gpf-~~~D~---~Gld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~ 283 (314)
T PRK08269 223 FAVL--GLL-EFIDW---GGCDILYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYA 283 (314)
T ss_pred ccCc--CHH-HHHHh---hhHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCC
Confidence 2110 110 00011 1122222222222221111 11234555555555555677888888884
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.3e-14 Score=151.61 Aligned_cols=64 Identities=38% Similarity=0.474 Sum_probs=60.9
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
|||||+++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.|.+++..
T Consensus 1 mmlv~~~~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~ 64 (284)
T PRK12737 1 MYIISTKNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVA 64 (284)
T ss_pred CCCCcHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999875543
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-14 Score=150.97 Aligned_cols=64 Identities=38% Similarity=0.474 Sum_probs=60.9
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
|+||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.+.+.+..
T Consensus 1 M~lv~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~ 64 (286)
T PRK12738 1 MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYA 64 (286)
T ss_pred CCCCcHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999876543
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.2e-14 Score=150.94 Aligned_cols=63 Identities=37% Similarity=0.501 Sum_probs=60.3
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
|||||+++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.|.+++.
T Consensus 1 Mmlv~~k~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~ 63 (284)
T PRK09195 1 MYLVSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLL 63 (284)
T ss_pred CCCCcHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999987553
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=144.62 Aligned_cols=171 Identities=18% Similarity=0.288 Sum_probs=129.0
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHHHhcCC--cccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQNVGG--LIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~G~--~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
..++|+|||+|.||..+|..|.+.|+ +|++|||++++.+.+.+.|. ..++++.++++++|+||+|+|... ...++
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v~ 83 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAVA 83 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHHH
Confidence 34699999999999999999999995 89999999999888888775 345678888899999999999865 56666
Q ss_pred ccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCcc-ccc-------CCCeEEEE---eCCH
Q 001973 221 YGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVK-RAS-------MGELTIMA---AGTE 288 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~-~a~-------~g~l~~~~---gg~~ 288 (988)
+.+.+.++++.+|+|++++.+...+.+.+.+. .+++|+.+ |+.|++. +.. .|..++++ ++++
T Consensus 84 ---~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~---~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~ 157 (307)
T PRK07502 84 ---AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP---EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDP 157 (307)
T ss_pred ---HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC---CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCH
Confidence 46667788999999999988777766655543 35678887 8887542 121 23333333 5678
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHH
Q 001973 289 ESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQ 323 (988)
Q Consensus 289 ~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N 323 (988)
+.++.++++++.+|.+++++ ++-.....+-++..
T Consensus 158 ~~~~~~~~l~~~lG~~~~~~-~~~~hD~~~A~~s~ 191 (307)
T PRK07502 158 AAVARLTAFWRALGARVEEM-DPEHHDLVLAITSH 191 (307)
T ss_pred HHHHHHHHHHHHcCCEEEEc-CHHHHhHHHHHHhh
Confidence 89999999999999998874 44444444444333
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.3e-14 Score=150.30 Aligned_cols=63 Identities=49% Similarity=0.660 Sum_probs=60.6
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
||||||++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.|.+++.
T Consensus 1 Mmlv~~k~iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~ 63 (284)
T PRK12857 1 MMLVTVAELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYIS 63 (284)
T ss_pred CCCCcHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999987664
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-13 Score=149.06 Aligned_cols=63 Identities=43% Similarity=0.574 Sum_probs=59.8
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcc-cCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKV-QYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~-~~~~~~~ 981 (988)
||||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++| .|++.+.
T Consensus 1 M~lv~~~~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~ 64 (285)
T PRK07709 1 MPLVSMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVV 64 (285)
T ss_pred CCCCcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999 7876553
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-13 Score=149.21 Aligned_cols=63 Identities=37% Similarity=0.546 Sum_probs=59.8
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcc-cCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKV-QYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~-~~~~~~~ 981 (988)
||||++++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+| .|++.+.
T Consensus 1 mmlv~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~ 64 (288)
T TIGR00167 1 MMLVDVKELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAIS 64 (288)
T ss_pred CCCccHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999 7877543
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-12 Score=143.02 Aligned_cols=194 Identities=18% Similarity=0.220 Sum_probs=137.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc----ccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL----IANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~----~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
++|+|||+|.||.+||..|.++|++|.+|+++++..+.....+.. ..+++.+++++||+||+|+|... +..++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~-~~~vl-- 77 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDA-TAALL-- 77 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHH-HHHHH--
Confidence 379999999999999999999999999999988776555444432 24567888999999999999864 77777
Q ss_pred ccchhh-hCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccCCcc--------cccCCCeEEEEe---CCHH
Q 001973 223 DLGAVS-ALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSGGVK--------RASMGELTIMAA---GTEE 289 (988)
Q Consensus 223 ~~~i~~-~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g~~~--------~a~~g~l~~~~g---g~~~ 289 (988)
+++.+ .++++.+|.|.++++......+.+.+. .+.+|+. .|+.|++. ..-.+..++++. ++++
T Consensus 78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~---~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~ 153 (359)
T PRK06545 78 -AELADLELKPGVIVTDVGSVKGAILAEAEALLG---DLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPD 153 (359)
T ss_pred -HHHhhcCCCCCcEEEeCccccHHHHHHHHHhcC---CCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHH
Confidence 56666 478899999999999887777765532 3567887 48877631 122344455554 4788
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 290 SLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 290 ~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
.++.++++++.+|..++++ ++-.....+.++..+-. ++++++ +...+.+.+....+..
T Consensus 154 ~~~~v~~l~~~lGa~~v~~-~~~~HD~~~A~vshlPh-----~ia~al--~~~~~~~~~~~~~la~ 211 (359)
T PRK06545 154 AVAELKDLLSGTGAKFVVL-DAEEHDRAVALVSHLPH-----ILASSL--AARLAGEHPLALRLAA 211 (359)
T ss_pred HHHHHHHHHHHcCCEEEEC-CHHHHhHHHhHhccHHH-----HHHHHH--HHhhccCchHHHhhhc
Confidence 9999999999999988775 44444455544443332 223333 5556666555555444
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-13 Score=149.12 Aligned_cols=63 Identities=40% Similarity=0.526 Sum_probs=60.3
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
|+||||++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.+.+++.
T Consensus 1 m~lv~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~ 63 (281)
T PRK06806 1 MPLVQMKELLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIG 63 (281)
T ss_pred CCCCcHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHH
Confidence 679999999999999999999999999999999999999999999999999999999987654
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-13 Score=148.38 Aligned_cols=63 Identities=35% Similarity=0.461 Sum_probs=60.1
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
|+||||++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.+++.+.
T Consensus 1 M~lv~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~ 63 (286)
T PRK06801 1 MALISLANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLV 63 (286)
T ss_pred CCCCcHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999977543
|
|
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-13 Score=150.37 Aligned_cols=64 Identities=34% Similarity=0.427 Sum_probs=60.9
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
|||||+++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.|.+++..
T Consensus 1 M~lv~~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~ 64 (347)
T PRK13399 1 MALITLRQLLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRH 64 (347)
T ss_pred CCCccHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999876543
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-13 Score=150.08 Aligned_cols=64 Identities=36% Similarity=0.458 Sum_probs=60.8
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
|+||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.|.+++..
T Consensus 1 M~lv~~k~lL~~A~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~ 64 (347)
T PRK09196 1 MALISLRQLLDHAAEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRH 64 (347)
T ss_pred CCCCcHHHHHHHHHHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999876643
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-13 Score=146.90 Aligned_cols=62 Identities=34% Similarity=0.535 Sum_probs=58.8
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC-HHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY-ITLV 980 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~-~~~~ 980 (988)
|||||+++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.+ ++.+
T Consensus 1 M~lv~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~ 63 (286)
T PRK08610 1 MPLVSMKEMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTV 63 (286)
T ss_pred CCCCcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHH
Confidence 6899999999999999999999999999999999999999999999999999999976 6644
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-13 Score=147.04 Aligned_cols=63 Identities=35% Similarity=0.504 Sum_probs=59.9
Q ss_pred ccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 920 RISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 920 ~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
|||+|++||++|++++|||||||++|+|+++|+++|||+++||||||+++++++|.|.+++..
T Consensus 1 Mlv~~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~ 63 (307)
T PRK05835 1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVG 63 (307)
T ss_pred CCCCHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999876543
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-13 Score=147.80 Aligned_cols=62 Identities=29% Similarity=0.441 Sum_probs=59.0
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC-HHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY-ITLV 980 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~-~~~~ 980 (988)
|+||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|++ .+.+
T Consensus 1 m~lv~~~~~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~ 63 (293)
T PRK07315 1 MAIVSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVC 63 (293)
T ss_pred CCCCcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHH
Confidence 6899999999999999999999999999999999999999999999999999999977 6644
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-13 Score=145.40 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=60.4
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
|||||+++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.|.+.+.
T Consensus 1 M~lv~~k~ll~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~ 63 (283)
T PRK07998 1 MPLVNGRILLDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIY 63 (283)
T ss_pred CCCCcHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987654
|
|
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-13 Score=146.34 Aligned_cols=60 Identities=37% Similarity=0.540 Sum_probs=58.2
Q ss_pred CcccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCH
Q 001973 918 PVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYI 977 (988)
Q Consensus 918 ~~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~ 977 (988)
.|+|||+++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.|.
T Consensus 6 ~m~lv~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~ 65 (321)
T PRK07084 6 ELGLVNTREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANA 65 (321)
T ss_pred hccccCHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCc
Confidence 488999999999999999999999999999999999999999999999999999999994
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=130.33 Aligned_cols=250 Identities=19% Similarity=0.219 Sum_probs=158.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCC----CeEEEEeCChhHHHHHH-hcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN----FTVIGYDVYRPTLTKFQ-NVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~-~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
|||||||+|+||.+|+..|.++| .+|++.||++++.+.+. +.|...+++..+++.++|+||+||+. +.+++++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP-q~~~~vl- 79 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP-QDLEEVL- 79 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh-HhHHHHH-
Confidence 69999999999999999999999 68999999999997554 45666678888999999999999985 6688888
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEe--CCHHHHHHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAA--GTEESLKSTGSVLS 299 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~g--g~~~~~~~~~~ll~ 299 (988)
..+.+ ..++++||......+ ...+.+++. +.+++-+ +-..+.....|...+..+ .+++..+.+..+|+
T Consensus 80 --~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~----~~~vvR~-MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~ 149 (266)
T COG0345 80 --SKLKP-LTKDKLVISIAAGVS--IETLERLLG----GLRVVRV-MPNTPALVGAGVTAISANANVSEEDKAFVEALLS 149 (266)
T ss_pred --HHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC----CCceEEe-CCChHHHHcCcceeeecCccCCHHHHHHHHHHHH
Confidence 46655 678888887654433 233444443 1233322 112233445555444443 25677889999999
Q ss_pred hcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHhcC-CCcccccccc--ccccCCC
Q 001973 300 ALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMA-FGARLGLNTRVLFNIITDSG-GSSWMFENRV--PHMLDND 375 (988)
Q Consensus 300 ~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~-la~~~Gid~~~~~~~l~~~~-~~s~~~~~~~--~~~~~~~ 375 (988)
.+|..+.+ . +--.-.+.-+... .-.++..+.|++. -+.+.|++.++..+++.+.. +...++.... |..+...
T Consensus 150 ~~G~v~~v-~-E~~~da~TaisGS--gPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~ 225 (266)
T COG0345 150 AVGKVVEV-E-ESLMDAVTALSGS--GPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQ 225 (266)
T ss_pred hcCCeEEe-c-hHHhhHHHHHhcC--CHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 99985543 2 2111111111111 0122333455553 38999999999999888764 3333332222 2223333
Q ss_pred -CCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc
Q 001973 376 -YTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419 (988)
Q Consensus 376 -~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~ 419 (988)
.+|+.+....++++ ++.|+.--+.+++.+.++++.+-
T Consensus 226 VtSPGGtTiagl~~l-------e~~g~~~~v~~av~aa~~r~~el 263 (266)
T COG0345 226 VTSPGGTTIAGLRVL-------EEDGFRGAVIEAVEAAYKRSEEL 263 (266)
T ss_pred CcCCCchHHHHHHHH-------HHhChHHHHHHHHHHHHHHHHHh
Confidence 34555544433333 37777777788888777777654
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-13 Score=143.87 Aligned_cols=61 Identities=44% Similarity=0.563 Sum_probs=58.2
Q ss_pred cccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 921 lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.+.+.+.
T Consensus 1 lv~~k~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~ 61 (282)
T TIGR01858 1 IVSTKYMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIV 61 (282)
T ss_pred CCcHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999987543
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-11 Score=132.64 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=117.4
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHh-ccCcEEEEEcCChHHHHHHHcc
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAA-KDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~-~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
+..|+|+|||+|.||..+|..|.+.|++|++||+++.. +.....|+...++..+++ .++|+||+|+|.. .+.+++
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl-- 109 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVL-- 109 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHH--
Confidence 34579999999999999999999999999999999743 444556777777888876 4799999999975 467777
Q ss_pred ccch-hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCccc--ccCCCeEEEE-------eCCHHHH
Q 001973 223 DLGA-VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKR--ASMGELTIMA-------AGTEESL 291 (988)
Q Consensus 223 ~~~i-~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~--a~~g~l~~~~-------gg~~~~~ 291 (988)
+.+ .+.++++++|+|.++++-.....+.+.++. +..|+.+ |+.|.... ...+.-.+.. ..+++.+
T Consensus 110 -~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~---~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 185 (304)
T PLN02256 110 -RSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE---EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARC 185 (304)
T ss_pred -HhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC---CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHH
Confidence 455 566788999999999877666666665542 4566665 77766533 1222222222 1266788
Q ss_pred HHHHHHHHhcCCeEEEE
Q 001973 292 KSTGSVLSALSEKLYVI 308 (988)
Q Consensus 292 ~~~~~ll~~~g~~v~~~ 308 (988)
+.++.+++.+|.+++.+
T Consensus 186 ~~l~~l~~~lGa~v~~~ 202 (304)
T PLN02256 186 ERFLDIFEEEGCRMVEM 202 (304)
T ss_pred HHHHHHHHHCCCEEEEe
Confidence 99999999999999886
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.1e-13 Score=145.35 Aligned_cols=62 Identities=34% Similarity=0.416 Sum_probs=58.8
Q ss_pred cccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 921 lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
||||++||++|++++||||||||+|+|+++|+++|||+++||||||+++++.+|+|.+++..
T Consensus 1 lv~~k~iL~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~ 62 (347)
T TIGR01521 1 LISMRQLLDHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRH 62 (347)
T ss_pred CCCHHHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999876543
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-13 Score=146.85 Aligned_cols=62 Identities=45% Similarity=0.611 Sum_probs=55.9
Q ss_pred ccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 920 RISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 920 ~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
|||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|+|.+++.
T Consensus 1 Mlv~~~~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~ 62 (287)
T PF01116_consen 1 MLVNMKELLKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLA 62 (287)
T ss_dssp -BHHHHHHHHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999987654
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-11 Score=145.16 Aligned_cols=179 Identities=14% Similarity=0.214 Sum_probs=123.4
Q ss_pred cccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHH
Q 001973 118 GVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPA 197 (988)
Q Consensus 118 g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~ 197 (988)
..+..++.+++.+-.. ... .......|||||||+|.||..+|++|.+.|++|++|||+... +...+.|+...+++.
T Consensus 344 ~~~~~~~~~~~~~~~~-~~~--~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~ 419 (667)
T PLN02712 344 MMRFQGVAQKYEYNAQ-VSG--CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDAD 419 (667)
T ss_pred hhhhhcccCCCCccch-hhh--ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHH
Confidence 3445555566554331 111 112234579999999999999999999999999999999654 555567877778888
Q ss_pred HHhc-cCcEEEEEcCChHHHHHHHccccchhh-hCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe-cCcccCCccc
Q 001973 198 EAAK-DVGVLVIMVTNEAQAESVLYGDLGAVS-ALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV-DAPVSGGVKR 274 (988)
Q Consensus 198 e~~~-~aDvV~l~vp~~~~~~~vl~~~~~i~~-~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l-dapv~g~~~~ 274 (988)
+++. .+|+||+|+|. ..+..++ +.+.. .++++++|+|+++++-.....+.+.++ .+..|+ ..|++|....
T Consensus 420 el~~~~aDvVILavP~-~~~~~vi---~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~---~~~~~v~~HPm~G~e~~ 492 (667)
T PLN02712 420 DLCEEHPEVILLCTSI-LSTEKVL---KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP---QDFDILCTHPMFGPESG 492 (667)
T ss_pred HHHhcCCCEEEECCCh-HHHHHHH---HHHHHhcCCCCcEEEECCCccHHHHHHHHHhcc---CCCceEeeCCCCCcccc
Confidence 8775 58999999996 4567766 34443 577899999999998545544444443 356787 6698887754
Q ss_pred ccCC--CeE-----EEEeCCHHHH---HHHHHHHHhcCCeEEEE
Q 001973 275 ASMG--ELT-----IMAAGTEESL---KSTGSVLSALSEKLYVI 308 (988)
Q Consensus 275 a~~g--~l~-----~~~gg~~~~~---~~~~~ll~~~g~~v~~~ 308 (988)
..| .+. .+++++.+.. +.+..+++.+|.+++.+
T Consensus 493 -~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~m 535 (667)
T PLN02712 493 -KNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEM 535 (667)
T ss_pred -ccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEe
Confidence 112 112 3345555444 45568899999998886
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=135.27 Aligned_cols=252 Identities=18% Similarity=0.139 Sum_probs=159.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCccc-----------CCHHHHhccCcEEEEEcCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLIA-----------NSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~~-----------~s~~e~~~~aDvV~l~vp~~ 213 (988)
.|||+|||+|.||+.+|..|++.|++|++++|++++++.+++. |.... ....+.....|+||+|++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 3699999999999999999999999999999998888888764 43221 11112235789999999987
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCccccc------CCCeEEEEeC-
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRAS------MGELTIMAAG- 286 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~------~g~l~~~~gg- 286 (988)
. +.+++ +.+.+.+.+++.|+-+.++. +..+.+.+.++.. +.+.+-+..+..... .+.-.+.+|.
T Consensus 82 ~-~~~al---~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~----~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~ 152 (305)
T PRK05708 82 D-AEPAV---ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHA----RCIFASSTEGAFRDGDWRVVFAGHGFTWLGDP 152 (305)
T ss_pred h-HHHHH---HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCC----cEEEEEeeeceecCCCCEEEEeceEEEEEcCC
Confidence 5 66666 57788888888887776553 3333455554321 222222221111111 1221233442
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCCC--
Q 001973 287 TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG------------------VHIASAAEAMAFGARLGLN-- 346 (988)
Q Consensus 287 ~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~------------------~~~~~~~Ea~~la~~~Gid-- 346 (988)
+.+..+++.++|...+.++.+ ..++-...|.|++.|...+ .+...+.|...++++.|++
T Consensus 153 ~~~~~~~l~~~l~~ag~~~~~-~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~ 231 (305)
T PRK05708 153 RNPTAPAWLDDLREAGIPHEW-TVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAA 231 (305)
T ss_pred CCcchHHHHHHHHhcCCCCcc-CHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 334556777888877766554 5788899999998876433 3455688999999999975
Q ss_pred HHHHHHHHH----hcC-CCcccccc-ccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 347 TRVLFNIIT----DSG-GSSWMFEN-RVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 347 ~~~~~~~l~----~~~-~~s~~~~~-~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
.+.+.+.+. ... ..|.++.. ...+-..-++. .+.++++++++|+++|..+.+++.++....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~sSM~qD~~~gR~tEid~i-----------~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~ 298 (305)
T PRK05708 232 AANLHEEVQRVIQATAANYSSMYQDVRAGRRTEISYL-----------LGYACRAADRHGLPLPRLQHLQQRLVAHLR 298 (305)
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHcCCceeehhh-----------hhHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 232333222 111 11111111 11111111111 258899999999999999999988877654
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-11 Score=133.16 Aligned_cols=251 Identities=18% Similarity=0.195 Sum_probs=171.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc------------cCCHHHHhccCcEEEEEcCChH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI------------ANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~------------~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
|||.|+|+|.||+.++..|+++|++|+++.|++. ++++++.|... .....+....+|+||+++++.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence 5999999999999999999999999999998877 88888876532 2233455668999999999866
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccC--------CCeE--EEE
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASM--------GELT--IMA 284 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~--------g~l~--~~~ 284 (988)
+++++ ..+.+.+.+.+.|+-..++. +..+.+.+.++.. +++.+-+..+...... |... .+.
T Consensus 80 -~~~al---~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~----~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~ 150 (307)
T COG1893 80 -LEEAL---PSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKE----TVLGGVTTHGAVREGPGHVVHTGLGDTVIGELR 150 (307)
T ss_pred -HHHHH---HHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcc----eEEEEEeeeeeEecCCceEEEecCCcEEEccCC
Confidence 77777 67888888887777666553 4444666665542 3333322222222221 2211 222
Q ss_pred eCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHc
Q 001973 285 AGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG---------------------VHIASAAEAMAFGARL 343 (988)
Q Consensus 285 gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~---------------------~~~~~~~Ea~~la~~~ 343 (988)
++.++.++.+.++|+..+.++.+ ..++-...|.|++.|+..+ ++...+.|....+.+.
T Consensus 151 ~~~~~~~~~i~~~~~~a~~~~~~-~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~ 229 (307)
T COG1893 151 GGRDELVKALAELFKEAGLEVEL-HPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAE 229 (307)
T ss_pred CCchHHHHHHHHHHHhCCCCeEE-cHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhc
Confidence 34557888888999888888776 4789999999998887665 4455678999999999
Q ss_pred C--CCH---HHHHHHHHhc--CCCcccccccc-ccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001973 344 G--LNT---RVLFNIITDS--GGSSWMFENRV-PHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLA 415 (988)
Q Consensus 344 G--id~---~~~~~~l~~~--~~~s~~~~~~~-~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~ 415 (988)
| ++. +.+....... ...|.+..... .+...-|+. .+.+++.|+++|+++|..+.++++++.
T Consensus 230 g~~~~~~~~~~v~~~~~~~~~~~~sSM~qDl~~gr~tEid~i-----------~G~vv~~a~~~gi~~P~~~~L~~lvk~ 298 (307)
T COG1893 230 GVELPEEVVERVLAVIRATDAENYSSMLQDLEKGRPTEIDAI-----------NGAVVRLAKKHGLATPVNDTLYALLKA 298 (307)
T ss_pred cCCCCHHHHHHHHHHHHhcccccCchHHHHHHcCCcccHHHH-----------hhHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 9 455 3444444433 12222222221 122222222 258899999999999999999999987
Q ss_pred HHHc
Q 001973 416 GSAA 419 (988)
Q Consensus 416 a~~~ 419 (988)
....
T Consensus 299 ~e~~ 302 (307)
T COG1893 299 KEAE 302 (307)
T ss_pred HHHh
Confidence 7653
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-11 Score=130.35 Aligned_cols=253 Identities=15% Similarity=0.102 Sum_probs=164.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hcC-------------CcccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ-----------NVG-------------GLIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G-------------~~~~~s~~e~~~~ 202 (988)
+||+|||.|.||..||..++..|++|+++|++++.+++.. +.| ++.++++. ++++
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~ 82 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD 82 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence 6999999999999999999998899999999977655432 222 22344444 6889
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEE
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTI 282 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~ 282 (988)
||+|+-+++...+++.-++ ..+-..++++.++-..|++-|-+...-.-.-+++..|.||.+.|..-. ++-
T Consensus 83 ~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~--------LVE 152 (307)
T COG1250 83 ADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMP--------LVE 152 (307)
T ss_pred CCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcce--------eEE
Confidence 9999999999988877665 566677777777766555444443222222233344677776542222 333
Q ss_pred EEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 283 MAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 283 ~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
++. .+++.++.+..+.+.+++.++...+.+| ++.|-+ ....+.|+..+......+++++..++..+.+
T Consensus 153 vI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG------Fi~NRi---l~~~~~eA~~l~~eGva~~e~ID~~~~~~~G 223 (307)
T COG1250 153 VIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPG------FIVNRL---LAALLNEAIRLLEEGVATPEEIDAAMRQGLG 223 (307)
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc------eehHhH---HHHHHHHHHHHHHhCCCCHHHHHHHHHhccC
Confidence 333 3689999999999999987544223344 334433 3456899999999888999999999987655
Q ss_pred CccccccccccccCCCCCCCchhhHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHHHcCCCCCChHH
Q 001973 360 SSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECL--SQRVPLHISTIAHQLFLAGSAAGWGRQDDAA 428 (988)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~--~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a 428 (988)
.. .+| +...|+.+ ++.+.+=+..+.+... ..-.+.|+.+...+.-+...+.|.|.+||..
T Consensus 224 ~p-----mGp-f~l~D~~G---lD~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 224 LP-----MGP-FELADLIG---LDVMLHIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred CC-----ccH-HHHHHHHh---HHHHHHHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 43 111 11111221 3344333444433222 1123456777777777777888888888876
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.9e-11 Score=127.93 Aligned_cols=246 Identities=19% Similarity=0.171 Sum_probs=151.1
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC----CeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN----FTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
+.|||+|||+|+||.+|+..|.++| .+++++||++++. +...+.++.++++++|+||+|+|. .++++++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp-~~~~~vl 74 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKP-DLAGKVL 74 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCH-HHHHHHH
Confidence 3469999999999999999999987 2599999987652 344567888888999999999985 5588888
Q ss_pred ccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC---CHHHHHHHHHH
Q 001973 221 YGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG---TEESLKSTGSV 297 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~l 297 (988)
+++.+++.++.+|.++++++.+..+.+ +.....-+++.. +.|.....+. +.+..+ +++..+.++.+
T Consensus 75 ---~~i~~~l~~~~iIS~~aGi~~~~l~~~---~~~~~~vvr~mP----n~p~~~g~g~-t~i~~~~~~~~~~~~~v~~l 143 (260)
T PTZ00431 75 ---LEIKPYLGSKLLISICGGLNLKTLEEM---VGVEAKIVRVMP----NTPSLVGQGS-LVFCANNNVDSTDKKKVIDI 143 (260)
T ss_pred ---HHHHhhccCCEEEEEeCCccHHHHHHH---cCCCCeEEEECC----CchhHhccee-EEEEeCCCCCHHHHHHHHHH
Confidence 577777776677788888876665443 221101112221 2223333443 334332 45678899999
Q ss_pred HHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccc--ccc-ccC
Q 001973 298 LSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG-GSSWMFENR--VPH-MLD 373 (988)
Q Consensus 298 l~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~-~~s~~~~~~--~~~-~~~ 373 (988)
|+.+|..+..-.........+--+...+.+.++.++. ..+.+.|++.++..+++.+.. +...++... .|. +.+
T Consensus 144 ~~~~G~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~---~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~ 220 (260)
T PTZ00431 144 FSACGIIQEIKEKDMDIATAISGCGPAYVFLFIESLI---DAGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKD 220 (260)
T ss_pred HHhCCcEEEEChHHcchhhhhcCCHHHHHHHHHHHHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 9999986543111122222211122333333333333 448899999999999887764 333232221 121 122
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 374 NDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 374 ~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
.=.+|+.+. ...++..++.|+.--+.+++...++++.+
T Consensus 221 ~v~spgG~T-------~~gl~~le~~g~~~~~~~a~~aa~~r~~~ 258 (260)
T PTZ00431 221 DVCSPGGIT-------IVGLYTLEKHAFKYTVMDAVESACQKSKS 258 (260)
T ss_pred hCCCCChHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHh
Confidence 223454442 23345556678777777777777777654
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-11 Score=128.39 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=126.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC---e-EEEEeC-ChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF---T-VIGYDV-YRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~---~-V~v~dr-~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
+.+||+|||+|.||.+++..|.++|+ + +++++| ++++.+.+.+. ++..++++.++++++|+||+|+|+.. .++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~-~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSA-HEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHH-HHH
Confidence 45799999999999999999998873 3 778887 47788877753 77777889999999999999999764 677
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe-cCcccCCcccccCCCeEEEE--eCCHHHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV-DAPVSGGVKRASMGELTIMA--AGTEESLKSTG 295 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l-dapv~g~~~~a~~g~l~~~~--gg~~~~~~~~~ 295 (988)
++ +.+.+.++ +++||.++.+.... .+.+.+.. +..++ ..|- .+.....+...+.. ..+++..+.++
T Consensus 82 v~---~~l~~~~~-~~~vis~~~gi~~~--~l~~~~~~---~~~v~r~~Pn--~a~~v~~g~~~~~~~~~~~~~~~~~v~ 150 (245)
T PRK07634 82 LL---AELSPLLS-NQLVVTVAAGIGPS--YLEERLPK---GTPVAWIMPN--TAAEIGKSISLYTMGQSVNETHKETLQ 150 (245)
T ss_pred HH---HHHHhhcc-CCEEEEECCCCCHH--HHHHHcCC---CCeEEEECCc--HHHHHhcCCeEEeeCCCCCHHHHHHHH
Confidence 77 45666555 67888776554333 24444432 22222 2231 12223334322322 35778889999
Q ss_pred HHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 296 SVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 296 ~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
.+|+.+|..++.-........++--+.-.+... ++..+...+.+.|+++++..+++...
T Consensus 151 ~lf~~~G~~~~~~e~~~~~~~a~~gs~pa~~~~---~~~a~~~~~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 151 LILKGIGTSQLCTEEEVHQLTAVTGSAPAFLYY---FAESLIEATKSYGVDEETAKHLVIQM 209 (245)
T ss_pred HHHHhCCCEEEECHHHcchHHhhhcchHHHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999987753111111111111111122222 23334455899999999988877654
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=127.12 Aligned_cols=165 Identities=23% Similarity=0.282 Sum_probs=122.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh--hHHHHHHhcCCccc--CCH-HHHhccCcEEEEEcCChHHHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR--PTLTKFQNVGGLIA--NSP-AEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~~~G~~~~--~s~-~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
+++|+|+|+|.||..+|+.|.++|+.|.+|+++. +..+...+.|+... .+. .+...++|+||+|||-.. +..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~-~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA-TEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH-HHHHH
Confidence 4699999999999999999999999887766554 44454444565432 333 677788999999999866 56666
Q ss_pred ccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCc--ccccCCCeEEEEeC---CHHHHHHH
Q 001973 221 YGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGV--KRASMGELTIMAAG---TEESLKST 294 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~--~~a~~g~l~~~~gg---~~~~~~~~ 294 (988)
+++.+++++|.+|+|.++++-...+.+.+..++ .. +|+.+ |++|+. ..--.+..++++-+ +.+.+.++
T Consensus 82 ---~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~--~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~ 155 (279)
T COG0287 82 ---KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPG--DV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEV 155 (279)
T ss_pred ---HHhcccCCCCCEEEecccccHHHHHHHHHhccC--CC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHH
Confidence 678889999999999999998888877776654 23 78877 888873 34445665555543 35688899
Q ss_pred HHHHHhcCCeEEEEeCCcchHHHH
Q 001973 295 GSVLSALSEKLYVIKGGCGAGSGV 318 (988)
Q Consensus 295 ~~ll~~~g~~v~~~~g~~g~a~~~ 318 (988)
..+++.+|.+++++ ..-..-..+
T Consensus 156 ~~~~~~~ga~~v~~-~~eeHD~~~ 178 (279)
T COG0287 156 KRLWEALGARLVEM-DAEEHDRVM 178 (279)
T ss_pred HHHHHHcCCEEEEc-ChHHHhHHH
Confidence 99999999998885 333333333
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.1e-12 Score=137.77 Aligned_cols=60 Identities=43% Similarity=0.586 Sum_probs=56.9
Q ss_pred cccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC-HHHH
Q 001973 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY-ITLV 980 (988)
Q Consensus 921 lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~-~~~~ 980 (988)
||+|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.+ ++.+
T Consensus 1 lv~~~~~l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~ 61 (282)
T TIGR01859 1 LVNGKEILQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMA 61 (282)
T ss_pred CCCHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHH
Confidence 68999999999999999999999999999999999999999999999999999977 6644
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.2e-11 Score=124.90 Aligned_cols=162 Identities=18% Similarity=0.155 Sum_probs=109.2
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--------CCc---ccCCHHHHhccCcEEEEEcCChH
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--------GGL---IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------G~~---~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
|||+||| +|+||++++..|+++||+|++|+|++++.+.+.+. |.. ...+..++++++|+||+|+|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 5899997 89999999999999999999999999998776652 221 23466788999999999999765
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHH---------------HHHHHHHHHHhcCCCceEecC------cccCCcc
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPG---------------FVSQLERRLQFEGKDLKLVDA------PVSGGVK 273 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~---------------~~~~l~~~l~~~~~g~~~lda------pv~g~~~ 273 (988)
+++++ +++.+.+. +++||+++...+. .++.+++.++. +.+++-+ .+..++
T Consensus 81 -~~~~l---~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~---~~~VVka~~~~~a~~~~~~- 151 (219)
T TIGR01915 81 -VLKTL---ESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE---TSRVVAAFHNLSAVLLQDV- 151 (219)
T ss_pred -HHHHH---HHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC---CCeEeeccccCCHHHhcCC-
Confidence 66666 35555554 5899998765432 12444554432 1333333 233332
Q ss_pred cccCCCeEEEEeCCHHHHHHHHHHHHhc-CCeEEEEeCCcchHHHH
Q 001973 274 RASMGELTIMAAGTEESLKSTGSVLSAL-SEKLYVIKGGCGAGSGV 318 (988)
Q Consensus 274 ~a~~g~l~~~~gg~~~~~~~~~~ll~~~-g~~v~~~~g~~g~a~~~ 318 (988)
....+.-.+++|-++++.+.+..+.+.+ |...+. .|++..+-.+
T Consensus 152 ~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd-~G~l~~a~~~ 196 (219)
T TIGR01915 152 DDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALD-AGPLENAAIV 196 (219)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCccc-CCchhhHHHH
Confidence 1112233445555577788899999999 988876 3665544443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-12 Score=136.66 Aligned_cols=62 Identities=32% Similarity=0.359 Sum_probs=57.6
Q ss_pred HHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHhhhh
Q 001973 924 TKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTSSIM 985 (988)
Q Consensus 924 ~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~~~~ 985 (988)
|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|.|.++..+++.
T Consensus 1 ~~~~L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~ 62 (283)
T PRK08185 1 MKELLKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRE 62 (283)
T ss_pred CHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999776666543
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.1e-12 Score=126.17 Aligned_cols=138 Identities=19% Similarity=0.231 Sum_probs=97.6
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC--------------CcccCCHHHHhccCcEEEEEcCCh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG--------------GLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G--------------~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
||+|||.|+||+++|..|+++||+|++|.|+++.++.+++.+ +.++++++++++++|+|++++|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 799999999999999999999999999999999999998743 235789999999999999999986
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCC-HHHHHHHHHHHHhcC--CCceEecCcccCCcccccCCCeEEEEeCCHH
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVS-PGFVSQLERRLQFEG--KDLKLVDAPVSGGVKRASMGELTIMAAGTEE 289 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~-p~~~~~l~~~l~~~~--~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~ 289 (988)
. .++++ +.+.+++++++++|.++.+- +++...+.+.+.+.. ..+.++.+|.+.........+..++++.+.+
T Consensus 81 ~-~~~~~---~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 81 A-HREVL---EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp G-HHHHH---HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred H-HHHHH---HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 5 78888 68899999999999988654 433333334333311 1255666665555544555555566666554
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-10 Score=125.71 Aligned_cols=193 Identities=18% Similarity=0.155 Sum_probs=129.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHH-HHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTL-TKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|||||+|+||.++|.+|...|++|++++++.++. +...+.|.... ++.+++++||+|++++|+... ..++. +
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~~--~ 92 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVYE--E 92 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHHH--H
Confidence 3689999999999999999999999999998875544 34445577654 899999999999999998765 67763 4
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccCCccc-------ccCCCeEEE-EeCC--HHHHHH
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSGGVKR-------ASMGELTIM-AAGT--EESLKS 293 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g~~~~-------a~~g~l~~~-~gg~--~~~~~~ 293 (988)
++.+++++|++|+.++.......+ .... .+..++- +|- +|.. ...|...++ +..+ .+..+.
T Consensus 93 ~I~~~Lk~g~iL~~a~G~~i~~~~----~~p~--~~~~Vi~vaPn--~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~ 164 (330)
T PRK05479 93 EIEPNLKEGAALAFAHGFNIHFGQ----IVPP--ADVDVIMVAPK--GPGHLVRREYEEGGGVPCLIAVHQDASGNAKDL 164 (330)
T ss_pred HHHhcCCCCCEEEECCCCChhhce----eccC--CCCcEEEeCCC--CCchhhhhhhhcCCCceEEEEecCCCCHHHHHH
Confidence 678889999999877775544432 1111 2333332 242 2222 344554455 4555 788899
Q ss_pred HHHHHHhcCCeEE-EEeCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 001973 294 TGSVLSALSEKLY-VIKGGCGA---GSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLF 351 (988)
Q Consensus 294 ~~~ll~~~g~~v~-~~~g~~g~---a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~ 351 (988)
+..+++.+|.... ++...+.. .....- ..++++....++..++......|.+|+..+
T Consensus 165 a~~l~~aiG~~~~g~~~ttf~~e~~~dl~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 165 ALAYAKGIGGTRAGVIETTFKEETETDLFGE-QAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred HHHHHHHcCCCccceeeeeecccccccchhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999997632 11111111 111111 345556666778888888999999987543
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-10 Score=125.58 Aligned_cols=197 Identities=17% Similarity=0.178 Sum_probs=124.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCC----CeEEEEeCCh-hHHHHHHhc--CCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN----FTVIGYDVYR-PTLTKFQNV--GGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G----~~V~v~dr~~-~~~~~l~~~--G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
+||+|||+|+||.+++..|.++| ++|++|+|++ ++.+.+... +...+.+..++++++|+||+|+|. ..++++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 58999999999999999999998 7899999865 445555443 344567888889999999999995 558888
Q ss_pred HccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC--CHHHHHHHHHH
Q 001973 220 LYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG--TEESLKSTGSV 297 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~l 297 (988)
+ +++.+.+.++++||..+.+..-. .+.+.++. ..++-+ +...+.....|...+..+. +++..+.++.+
T Consensus 81 l---~~l~~~l~~~~~ivS~~aGi~~~--~l~~~~~~----~~vvR~-MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l 150 (277)
T PRK06928 81 L---KDCAPVLTPDRHVVSIAAGVSLD--DLLEITPG----LQVSRL-IPSLTSAVGVGTSLVAHAETVNEANKSRLEET 150 (277)
T ss_pred H---HHHHhhcCCCCEEEEECCCCCHH--HHHHHcCC----CCEEEE-eCccHHHHhhhcEEEecCCCCCHHHHHHHHHH
Confidence 7 57777787888888776543322 44444431 122211 1122334445553333332 45677889999
Q ss_pred HHhcCCeEEEEeC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHhcC
Q 001973 298 LSALSEKLYVIKG-GCGAGSGVKMANQLLAGVHIASAAEAMAFGARL-GLNTRVLFNIITDSG 358 (988)
Q Consensus 298 l~~~g~~v~~~~g-~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~-Gid~~~~~~~l~~~~ 358 (988)
|+.+|..+.. .. ......++--+.-.+.+.++.++.++ +.+. |++.++..+++.+..
T Consensus 151 ~~~~G~~~~v-~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~ 209 (277)
T PRK06928 151 LSHFSHVMTI-REENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFAL 209 (277)
T ss_pred HHhCCCEEEE-chhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHH
Confidence 9999975433 11 11111111011122333333333333 6777 799999988887654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-10 Score=136.61 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=114.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHh-ccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAA-KDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~-~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
+|+|||||+|.||..+|..|.+.|++|++|||+... +...+.|+...+++.+++ .++|+||+|+|. ..+..++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl---~ 126 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVL---K 126 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHH---H
Confidence 479999999999999999999999999999998554 455667887788888865 569999999996 4577777 4
Q ss_pred chh-hhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCccc--ccCCCeEEEEe---CC-H---HHHHH
Q 001973 225 GAV-SALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKR--ASMGELTIMAA---GT-E---ESLKS 293 (988)
Q Consensus 225 ~i~-~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~--a~~g~l~~~~g---g~-~---~~~~~ 293 (988)
++. +.++++++|+|++++.....+.+.+.++. +..|+.. |++|.... ...+...++.+ ++ . +.++.
T Consensus 127 ~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~---~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (667)
T PLN02712 127 SLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE---DFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKS 203 (667)
T ss_pred hhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC---CCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHH
Confidence 554 56788999999999987666666665543 4567665 77766532 12233233332 32 2 34566
Q ss_pred HHHHHHhcCCeEEEE
Q 001973 294 TGSVLSALSEKLYVI 308 (988)
Q Consensus 294 ~~~ll~~~g~~v~~~ 308 (988)
+..+++.+|.+++.+
T Consensus 204 l~~l~~~lGa~v~~m 218 (667)
T PLN02712 204 FLEVFEREGCKMVEM 218 (667)
T ss_pred HHHHHHHcCCEEEEe
Confidence 779999999999886
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-11 Score=136.70 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=102.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhh-ccCCchhhhccccccccCCCCcchHHHHHHhH---HHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFG--IHPWVLYDIISN-AAGNSWIFKNYIPNLLRGDAKLHFLNAFIQNL---GIALD 74 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~G--ld~~~~~~~l~~-~~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl---~la~~ 74 (988)
|+||+++++++++++||+.|++++| +|++.++++++. +.++|++++.+.+.+.+++| +|.++++.||+ +++++
T Consensus 173 l~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~-~~~l~~~~KD~~~~~l~~~ 251 (299)
T PRK12490 173 MVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK-LAGIKGYVNDSGEGRWTVE 251 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC-hhhhhHHHHhcCcHHHHHH
Confidence 5899999999999999999999999 999999999996 45999999999998876543 57899999998 89999
Q ss_pred HHHhcCCCCcHHHHHH-HHHHHHhhCcCCCCCchhHHHHHH
Q 001973 75 MAKTLAFPLPLLAVAH-QQLILGLSHAHANDDNPPLVKVWE 114 (988)
Q Consensus 75 ~a~~~g~~~p~~~~~~-~~~~~a~~~G~g~~D~~~~~~~~~ 114 (988)
+|++.|+|+|+.+.+. .+|....++|.|+.|++++.+++-
T Consensus 252 ~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 252 EAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 9999999999999995 999999999999999999887753
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=116.72 Aligned_cols=167 Identities=19% Similarity=0.218 Sum_probs=109.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHH-HHHHhc-CC-cccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTL-TKFQNV-GG-LIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~-G~-~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
||+|+|+|.|+||.++|++|+++||+|++-+|+.++. +...+. +. ....++.++++.+|+||++||-+. +..++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a-~~~v~-- 77 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA-IPDVL-- 77 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH-HHhHH--
Confidence 4799999999999999999999999999997665543 333322 32 235678899999999999999866 55555
Q ss_pred ccchhhhCCCCCEEEecCCC---------------CHHHHHHHHHHHHhcC--CCceEecCcccCCcccccCCCeEEEEe
Q 001973 223 DLGAVSALSSGASIILSSTV---------------SPGFVSQLERRLQFEG--KDLKLVDAPVSGGVKRASMGELTIMAA 285 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~---------------~p~~~~~l~~~l~~~~--~g~~~ldapv~g~~~~a~~g~l~~~~g 285 (988)
.++...+. |++|||++.- .-..++.+++.++... +.++-+.+.....-.... +...+++.
T Consensus 78 -~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~-~~~~v~va 154 (211)
T COG2085 78 -AELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPG-GRRDVLVA 154 (211)
T ss_pred -HHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcC-CceeEEEe
Confidence 45555554 8999999874 1123444455444310 112223222222222222 44455555
Q ss_pred -CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHH
Q 001973 286 -GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVK 319 (988)
Q Consensus 286 -g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~K 319 (988)
-|.++.+.+..+.+.+|...+. +|++..+..+-
T Consensus 155 gDD~~Ak~~v~~L~~~iG~~~ld-~G~L~~a~~le 188 (211)
T COG2085 155 GDDAEAKAVVAELAEDIGFRPLD-AGPLENARILE 188 (211)
T ss_pred cCcHHHHHHHHHHHHhcCcceee-ccccccccccc
Confidence 4567888999999999988876 57766555443
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-11 Score=131.17 Aligned_cols=59 Identities=49% Similarity=0.726 Sum_probs=55.5
Q ss_pred HHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 924 TKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 924 ~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
|++||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.|++.+..
T Consensus 1 ~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~ 59 (276)
T cd00947 1 TKELLKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVA 59 (276)
T ss_pred CHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999875543
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-10 Score=137.46 Aligned_cols=186 Identities=13% Similarity=0.074 Sum_probs=130.3
Q ss_pred CeEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhHHHHHH-----------hc-------------CCcccCCHHHHhc
Q 001973 147 TRVGFIGLGAMGFGMATHLL-RSNFTVIGYDVYRPTLTKFQ-----------NV-------------GGLIANSPAEAAK 201 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~-----------~~-------------G~~~~~s~~e~~~ 201 (988)
+||+|||+|.||..||..++ .+|++|++||++++..+... +. .++.++++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999998 58999999999987655422 11 23345666 4678
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCCceEecCcccCCcccccCCC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF--EGKDLKLVDAPVSGGVKRASMGE 279 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~--~~~g~~~ldapv~g~~~~a~~g~ 279 (988)
+||+||-++|...+++.-++ .++-+.+++++++...|+..|-+. +++.+.. +..|.||...|..- .
T Consensus 384 ~adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i~~--la~~~~~p~r~~g~HffnP~~~~--------~ 451 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSSLPIGQ--IAAAASRPENVIGLHYFSPVEKM--------P 451 (699)
T ss_pred cCCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCHHH--HHHhcCCcccEEEEecCCccccC--------c
Confidence 99999999999988776665 567777888888776555544432 3443332 22355665443221 1
Q ss_pred eEEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 280 LTIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 280 l~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
++-++. .+++.++.+..+++.+|+.++++.+.+| ++.|-+ ....++|++.+.+ .|++++++..++.
T Consensus 452 lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl---~~~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 452 LVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAG------FYVNRI---LAPYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccc------hHHHHH---HHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 233332 4789999999999999999887533333 333433 3356899988887 5789999988874
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.3e-10 Score=138.85 Aligned_cols=182 Identities=20% Similarity=0.175 Sum_probs=132.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhcCCc--ccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNVGGL--IANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~G~~--~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
.||+|||+|.||.++++.|.++| ++|++||+++++.+.+.+.|.. ..++..++++++|+||+|+|.. .+++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-- 80 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-- 80 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH--
Confidence 58999999999999999999999 4899999999998888887764 4567888899999999999975 577777
Q ss_pred ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe-cCcccCCccc--------ccCCCeEEEEe---CCHHH
Q 001973 223 DLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV-DAPVSGGVKR--------ASMGELTIMAA---GTEES 290 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l-dapv~g~~~~--------a~~g~l~~~~g---g~~~~ 290 (988)
+.+.+.++++.+|+|+++++......+.+.+.. ...+|+ ..|++|+... .-.+..++++. ++++.
T Consensus 81 -~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~--~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~ 157 (735)
T PRK14806 81 -ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGE--LPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAA 157 (735)
T ss_pred -HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccc--cCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHH
Confidence 577778888999999999998888877776643 245554 5587766531 11233333342 56778
Q ss_pred HHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 001973 291 LKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEA 336 (988)
Q Consensus 291 ~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea 336 (988)
++.++++|+.+|.+++++ ++-..-..+- +.+..-++....+.|+
T Consensus 158 ~~~~~~l~~~~G~~~~~~-~~~~hD~~~a-~~~~~ph~~~~~l~~~ 201 (735)
T PRK14806 158 LARVDRLWRAVGADVLHM-DVAHHDEVLA-ATSHLPHLLAFSLVDQ 201 (735)
T ss_pred HHHHHHHHHHcCCEEEEc-CHHHHhHHHH-HhcchHHHHHHHHHHH
Confidence 899999999999988775 3322222222 3333333344445555
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-10 Score=137.69 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=131.5
Q ss_pred CeEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhHHHHHH-----------hcC-------------CcccCCHHHHhc
Q 001973 147 TRVGFIGLGAMGFGMATHLL-RSNFTVIGYDVYRPTLTKFQ-----------NVG-------------GLIANSPAEAAK 201 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~-----------~~G-------------~~~~~s~~e~~~ 201 (988)
.||+|||+|.||..||..++ .+|++|++||++++..+... +.| ++.++++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 58999999999999999999 88999999999988655432 112 3345666 5678
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCCC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMGE 279 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g~ 279 (988)
+||+||-++|....++.-++ .++-+.+++++++...|+..|-+. +++.+. ++..|.||...|..- .
T Consensus 389 ~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i~~--la~~~~~p~r~ig~Hff~P~~~~--------~ 456 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSSLPIGQ--IAAAAARPEQVIGLHYFSPVEKM--------P 456 (708)
T ss_pred cCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHH--HHHhcCcccceEEEecCCccccC--------c
Confidence 99999999999888776665 577778889888887666555443 333332 222355555433211 1
Q ss_pred eEEEE---eCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 280 LTIMA---AGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 280 l~~~~---gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
++-++ ..+++.++.+..++..+|+.++++.+.+| ++.|-+ ....++|++.+.+. |++++++..++.
T Consensus 457 lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl---~~~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 457 LVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAG------FYVNRI---LAPYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc------HHHHHH---HHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 23333 24789999999999999998877533344 233433 34568999988876 889999988875
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-10 Score=139.35 Aligned_cols=190 Identities=14% Similarity=0.116 Sum_probs=133.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hcC-------------CcccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ-----------NVG-------------GLIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G-------------~~~~~s~~e~~~~ 202 (988)
.||+|||+|.||..||..++.+||+|++||++++..+... +.| ++.++++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999999998765421 122 3345666 45789
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCCceEecCcccCCcccccCCCe
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF--EGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~--~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
||+||-++|..-+++.-++ .++.+.++++.++...|+..|-+. +++.+.. +..|.||...|..- .+
T Consensus 393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i~~--la~~~~~p~r~~g~Hff~P~~~~--------~l 460 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTSTISISL--LAKALKRPENFCGMHFFNPVHRM--------PL 460 (715)
T ss_pred CCEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHH--HHhhcCCCccEEEEecCCccccc--------ce
Confidence 9999999999888776665 577778888888876665555443 4443332 22345555433111 12
Q ss_pred EEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 281 TIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 281 ~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
+-++. .+++.++.+..++..+|+.++.+.+.+| ++.|-+. ..+++|++.+.+. |.+++++..++..+
T Consensus 461 VEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG------fv~nRi~---~~~~~ea~~lv~~-Ga~~e~ID~a~~~~ 530 (715)
T PRK11730 461 VEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVL---FPYFAGFSQLLRD-GADFRQIDKVMEKQ 530 (715)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCc------hhHHHHH---HHHHHHHHHHHHc-CCCHHHHHHHHHhh
Confidence 32332 4789999999999999999887533444 3445432 3357899988875 59999999987754
Q ss_pred CC
Q 001973 358 GG 359 (988)
Q Consensus 358 ~~ 359 (988)
.+
T Consensus 531 ~G 532 (715)
T PRK11730 531 FG 532 (715)
T ss_pred CC
Confidence 44
|
|
| >TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-11 Score=132.52 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC
Q 001973 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY 976 (988)
Q Consensus 923 ~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~ 976 (988)
.+++||++|++++|||||||++|+|+++|+++|||+++||||||+++++++|++
T Consensus 14 ~~~~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~ 67 (357)
T TIGR01520 14 DVHKLFQYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIA 67 (357)
T ss_pred HHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcC
Confidence 479999999999999999999999999999999999999999999999999854
|
coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree. |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.9e-11 Score=107.85 Aligned_cols=89 Identities=26% Similarity=0.340 Sum_probs=74.6
Q ss_pred eEEEEccchHHHHHHHHHHhCC---CeEEEE-eCChhHHHHHHhc-CCcccC-CHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 148 RVGFIGLGAMGFGMATHLLRSN---FTVIGY-DVYRPTLTKFQNV-GGLIAN-SPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G---~~V~v~-dr~~~~~~~l~~~-G~~~~~-s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
||||||+|+||++|++.|.++| ++|+++ +|++++.+++.+. +..... +..++++++|+||+|||... +.+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~-~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQ-LPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGG-HHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHH-HHHHH-
Confidence 7999999999999999999999 999955 9999999998665 555555 89999999999999999755 77777
Q ss_pred cccchhhhCCCCCEEEecCC
Q 001973 222 GDLGAVSALSSGASIILSST 241 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st 241 (988)
..+ ....+++++|+.+.
T Consensus 79 --~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 79 --SEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp --HHH-HHHHTTSEEEEEST
T ss_pred --HHH-hhccCCCEEEEeCC
Confidence 466 67778999998764
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.5e-10 Score=137.44 Aligned_cols=190 Identities=12% Similarity=0.097 Sum_probs=134.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------cC-------------CcccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------VG-------------GLIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G-------------~~~~~s~~e~~~~ 202 (988)
.+|+|||+|.||..||..++.+|++|++||++++.+++..+ .| ++.++++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 58999999999999999999999999999999987664321 12 3345666 45789
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCCCe
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
||+||-+++..-+++.-++ .++-+.+++++++...|+..|-+. ++..+. ++..|.||...|..- .+
T Consensus 393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~i~~--ia~~~~~p~r~ig~Hff~P~~~~--------~l 460 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTSTISISL--LAKALKRPENFCGMHFFNPVHRM--------PL 460 (714)
T ss_pred CCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHH--HHhhcCCcccEEEEecCCCcccC--------ce
Confidence 9999999999988876665 677788888888877665555443 344333 222356665433111 22
Q ss_pred EEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 281 TIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 281 ~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
+-++. .+++.++.+..++..+|+..+.+.+.+| ++.|-+. ..++.|++.+.+ .|.+++++..++..+
T Consensus 461 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~NRl~---~~~~~ea~~l~~-eG~~~~~ID~a~~~~ 530 (714)
T TIGR02437 461 VEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVL---FPYFGGFSKLLR-DGADFVRIDKVMEKQ 530 (714)
T ss_pred EeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCccc------chHHHHH---HHHHHHHHHHHH-CCCCHHHHHHHHHhc
Confidence 33332 4689999999999999999887533333 3445442 345789999886 469999999988655
Q ss_pred CC
Q 001973 358 GG 359 (988)
Q Consensus 358 ~~ 359 (988)
.+
T Consensus 531 ~G 532 (714)
T TIGR02437 531 FG 532 (714)
T ss_pred CC
Confidence 44
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=119.04 Aligned_cols=148 Identities=17% Similarity=0.234 Sum_probs=98.4
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------c-------------CCcccCCHHHHhccC
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------V-------------GGLIANSPAEAAKDV 203 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~-------------G~~~~~s~~e~~~~a 203 (988)
||+|||+|.||..+|..++.+|++|++||++++..+...+ . .+..+++++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999999987654322 1 234678888888 99
Q ss_pred cEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCCCeE
Q 001973 204 GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMGELT 281 (988)
Q Consensus 204 DvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g~l~ 281 (988)
|+||-|+|....++.-++ ..+.+.++++.++...|+..+-+ +++..+. ++..|.||...|..- .++
T Consensus 80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p~R~ig~Hf~~P~~~~--------~lV 147 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSLSIS--ELAAALSRPERFIGMHFFNPPHLM--------PLV 147 (180)
T ss_dssp SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTGGGEEEEEE-SSTTT----------EE
T ss_pred heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCCCHH--HHHhccCcCceEEEEecccccccC--------ceE
Confidence 999999999887766655 57777788888888766655443 2333332 222356666433211 123
Q ss_pred EEE-e--CCHHHHHHHHHHHHhcCCeEEEE
Q 001973 282 IMA-A--GTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 282 ~~~-g--g~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
=++ + .+++.++.+..+++.+|+.++.+
T Consensus 148 Evv~~~~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 148 EVVPGPKTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp EEEE-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 222 2 47899999999999999988764
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK09197 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-11 Score=130.92 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC
Q 001973 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY 976 (988)
Q Consensus 923 ~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~ 976 (988)
.+++||++|++++|||||||++|+|+++|+++|||+++||||||+++++.+|++
T Consensus 8 ~~k~~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~ 61 (350)
T PRK09197 8 DYQEMFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIA 61 (350)
T ss_pred HHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcC
Confidence 479999999999999999999999999999999999999999999999999865
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=134.75 Aligned_cols=186 Identities=14% Similarity=0.110 Sum_probs=131.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------cC-------------CcccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------VG-------------GLIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G-------------~~~~~s~~e~~~~ 202 (988)
.+|+|||+|.||..||..++.+|++|++||++++.+++..+ .| ++.++++. .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 58999999999999999999999999999999988665321 12 33456664 5789
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCCCe
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
||+||-+++...+++.-++ .++-+.++++.++...|+.-|-+ ++++.+. ++..|.||...|..- .+
T Consensus 415 aDlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~ig~Hff~P~~~m--------~L 482 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTSALPIK--DIAAVSSRPEKVIGMHYFSPVDKM--------QL 482 (737)
T ss_pred CCeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCccceEEEeccCCcccC--------ce
Confidence 9999999999988877665 57777888888877655444433 2344332 222355666433111 22
Q ss_pred EEEE---eCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 281 TIMA---AGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 281 ~~~~---gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
+-++ ..+++.++.+..++..+|+.++++.+.+| ++.|-+. ..+++|++.+.+. |++++++..++.
T Consensus 483 vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------Fi~NRi~---~~~~~ea~~lv~e-Gv~~~~ID~a~~ 550 (737)
T TIGR02441 483 LEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPG------FYTTRCL---GPMLAEVIRLLQE-GVDPKKLDKLTT 550 (737)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC------chHHHHH---HHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 3333 24788999999999999999887533344 3344332 3568999988755 789999998753
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-09 Score=119.22 Aligned_cols=155 Identities=18% Similarity=0.193 Sum_probs=113.0
Q ss_pred CCeEEEEcc-chHHHHHHHHHHh-CCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLR-SNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
.++|+|||+ |.||..+|+.|.+ .|++|++||++.+ ...++.+.+.+||+||+|+|-.. +..++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~-~~~~l--- 68 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRH-TAALI--- 68 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHH-HHHHH---
Confidence 479999999 9999999999996 4899999998521 24567888999999999999866 55555
Q ss_pred cchhhh---CCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCcc-cccCCCeEEEEeCC-HHHHHHHHHH
Q 001973 224 LGAVSA---LSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVK-RASMGELTIMAAGT-EESLKSTGSV 297 (988)
Q Consensus 224 ~~i~~~---l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~-~a~~g~l~~~~gg~-~~~~~~~~~l 297 (988)
+++.+. ++++++|+|.++++......+. . .+..|+.+ |++|+.. ..-.+..++++.+. .+..+.++.+
T Consensus 69 ~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~----~--~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l 142 (370)
T PRK08818 69 EEYVALAGGRAAGQLWLDVTSIKQAPVAAML----A--SQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSL 142 (370)
T ss_pred HHHhhhhcCCCCCeEEEECCCCcHHHHHHHH----h--cCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHH
Confidence 455554 7899999999999866655442 2 23567776 7877753 33356656666543 3446788999
Q ss_pred HHhcCCeEEEEeCCcchHHHHHHHH
Q 001973 298 LSALSEKLYVIKGGCGAGSGVKMAN 322 (988)
Q Consensus 298 l~~~g~~v~~~~g~~g~a~~~Kl~~ 322 (988)
++.+|.+++.+ ..-.+-..+-+++
T Consensus 143 ~~~~Ga~v~~~-~aeeHD~~~A~vS 166 (370)
T PRK08818 143 CSALQAECVYA-TPEHHDRVMALVQ 166 (370)
T ss_pred HHHcCCEEEEc-CHHHHHHHHHHHH
Confidence 99999998885 4444445555554
|
|
| >cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-10 Score=126.37 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=50.1
Q ss_pred HHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEecc-chhcccC
Q 001973 925 KELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRS-TCFKVQY 976 (988)
Q Consensus 925 ~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~-~~~~~~~ 976 (988)
++||++|++++||||||||+|+|+++|+++|||+.++|||||+++ +..+|.|
T Consensus 2 ~~ll~~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g 54 (340)
T cd00453 2 QKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAG 54 (340)
T ss_pred HHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCC
Confidence 789999999999999999999999999999999999999999999 6778888
|
This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=124.76 Aligned_cols=188 Identities=15% Similarity=0.146 Sum_probs=139.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-c--hHHHHHHhHHHHHHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-H--FLNAFIQNLGIALDMAK 77 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f--~l~l~~KDl~la~~~a~ 77 (988)
+++|++.+++++.+.|++.++++.|+|++.++++++.+ ++|..++|.| | ....+.||++++++.|+
T Consensus 209 l~~N~~~a~~ia~~nE~~~la~~~GiD~~~v~~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~ 277 (411)
T TIGR03026 209 LAENTFRAVKIAFANELARICEALGIDVYEVIEAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAK 277 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHH
Confidence 57999999999999999999999999999999999764 4566778888 5 46779999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEcc---
Q 001973 78 TLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGL--- 154 (988)
Q Consensus 78 ~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~--- 154 (988)
+.|+++|+.+.+.+.-+..... +++.+.+..+ . ....+|+|+|+
T Consensus 278 ~~g~~~~l~~~~~~~N~~~~~~---------~~~~~~~~l~-------------------~-----~~~~~v~vlGlafK 324 (411)
T TIGR03026 278 ELGYNPELIEAAREINDSQPDY---------VVEKILDLLG-------------------P-----LKGKTVLILGLAFK 324 (411)
T ss_pred hcCCCcHHHHHHHHHHHHhHHH---------HHHHHHHHhh-------------------c-----ccCCEEEEEeeEec
Confidence 9999999999998887754432 3443333221 0 01248999998
Q ss_pred -------chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchh
Q 001973 155 -------GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAV 227 (988)
Q Consensus 155 -------G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~ 227 (988)
..-...++..|.+.|.+|.+||........ . ....++++.++++++|.|++++..+. .++.-+ +.+.
T Consensus 325 ~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~-~--~~~~~~~~~~~~~~ad~~v~~t~~~~-~~~~~~--~~~~ 398 (411)
T TIGR03026 325 PNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEV-K--GLPLIDDLEEALKGADALVILTDHDE-FKDLDL--EKIK 398 (411)
T ss_pred CCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhh-h--hcccCCCHHHHHhCCCEEEEecCCHH-HhccCH--HHHH
Confidence 346778999999999999999976433211 1 12236788899999999999999866 332210 2233
Q ss_pred hhCCCCCEEEec
Q 001973 228 SALSSGASIILS 239 (988)
Q Consensus 228 ~~l~~g~ivId~ 239 (988)
+.+ +..+|+|.
T Consensus 399 ~~~-~~~~v~D~ 409 (411)
T TIGR03026 399 DLM-KGKVVVDT 409 (411)
T ss_pred Hhc-CCCEEEeC
Confidence 323 34578875
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-10 Score=128.27 Aligned_cols=54 Identities=24% Similarity=0.301 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC
Q 001973 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY 976 (988)
Q Consensus 923 ~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~ 976 (988)
.|++||++|++++|||||||++|+|+++|+++|||+++||||||+++++.+|++
T Consensus 3 ~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~ 56 (345)
T cd00946 3 DVLKLFDYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYA 56 (345)
T ss_pred HHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcC
Confidence 379999999999999999999999999999999999999999999999988744
|
The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-10 Score=108.92 Aligned_cols=100 Identities=21% Similarity=0.283 Sum_probs=69.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEE-EeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIG-YDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
.+||+|||.|++|..+++.|.++||+|.. |+|+++..+++... +.....++.|.++++|++|++|||+. +..+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~va--- 85 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAEVA--- 85 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHHHH---
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHHHH---
Confidence 46999999999999999999999999866 48988887777654 44455678889999999999999975 77776
Q ss_pred cchhhh--CCCCCEEEecCCCCHHHHHH
Q 001973 224 LGAVSA--LSSGASIILSSTVSPGFVSQ 249 (988)
Q Consensus 224 ~~i~~~--l~~g~ivId~st~~p~~~~~ 249 (988)
+++... ..+|++|++||...+....+
T Consensus 86 ~~La~~~~~~~g~iVvHtSGa~~~~vL~ 113 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTSGALGSDVLA 113 (127)
T ss_dssp HHHHCC--S-TT-EEEES-SS--GGGGH
T ss_pred HHHHHhccCCCCcEEEECCCCChHHhhh
Confidence 566665 77999999999887655443
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=121.02 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=96.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|.+|.+|||+....+.....|+....+++++++.||+|++++|...+++.++. ++
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~ 269 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD--AD 269 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhC--HH
Confidence 3689999999999999999999999999999987444434445766677999999999999999999999999984 57
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.+..+++|.++||++.+..-....+.+.+.+.
T Consensus 270 ~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 270 VLSRMKRGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred HHhcCCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence 78889999999999999999999999999873
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=111.85 Aligned_cols=240 Identities=15% Similarity=0.100 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc--------------cCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 156 AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI--------------ANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 156 ~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~--------------~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
.||+.+|..|+++||+|++|+|+ ++.+.+++.|..+ .+++++ ....|+||+|++..+ +++++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~-~~~~l- 76 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ-TEEAA- 76 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh-HHHHH-
Confidence 47999999999999999999997 6778887766421 223444 568999999999875 67776
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CCceEecCcccCCcc---cccCCCeEEEEeCC---HHHHHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG--KDLKLVDAPVSGGVK---RASMGELTIMAAGT---EESLKS 293 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~--~g~~~ldapv~g~~~---~a~~g~l~~~~gg~---~~~~~~ 293 (988)
+.+.+.+.++++|+.+.++- +..+.+.+.++... .++.+..+-.. +|. ....+. +.+|.. .+..+.
T Consensus 77 --~~l~~~l~~~~~iv~~qNG~-g~~~~l~~~~~~~~v~~g~~~~~~~~~-~pg~v~~~~~~~--~~iG~~~~~~~~~~~ 150 (293)
T TIGR00745 77 --ALLLPLIGKNTKVLFLQNGL-GHEERLRELLPARRILGGVVTHGAVRE-EPGVVHHAGLGA--TKIGDYVGENEAVEA 150 (293)
T ss_pred --HHhHhhcCCCCEEEEccCCC-CCHHHHHHHhCccCEEEEEEEEeeEEc-CCcEEEEecccc--EEEecCCCchHHHHH
Confidence 57778888888888766542 33345555553210 01111111111 111 111222 334432 245667
Q ss_pred HHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCC--HHHH
Q 001973 294 TGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG---------------------VHIASAAEAMAFGARLGLN--TRVL 350 (988)
Q Consensus 294 ~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~---------------------~~~~~~~Ea~~la~~~Gid--~~~~ 350 (988)
+..+|+..+.++.. ..++-...|.|++.|...+ .+...+.|+..++++.|++ .+.+
T Consensus 151 l~~~l~~~~~~~~~-~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~ 229 (293)
T TIGR00745 151 LAELLNEAGIPAEL-HGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEV 229 (293)
T ss_pred HHHHHHhCCCCCEe-cchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 77888877777655 5788899999998775322 4455688999999999975 3333
Q ss_pred HHHHHhc---C--CCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001973 351 FNIITDS---G--GSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAG 416 (988)
Q Consensus 351 ~~~l~~~---~--~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a 416 (988)
.+.+... . ..|.++... ..+ -. .++--=.+++++.++++|+++|..+.++++++..
T Consensus 230 ~~~~~~~~~~~~~~~sSm~~D~----~~g-----r~-tEid~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 230 EELVRAVIRMTAENTSSMLQDL----LRG-----RR-TEIDAINGAVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred HHHHHHHHhcCCCCCChHHHHH----HcC-----Cc-chHHHhccHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 3333321 1 111111111 001 00 0111113588999999999999999999887654
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=111.56 Aligned_cols=193 Identities=20% Similarity=0.192 Sum_probs=120.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCC-hhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVY-RPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|+|||+|+||.++|.+|.+.|++|+++++. +++.+.+.+.|+... +..+++++||+|++++|+..+...++ +
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---~ 78 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---A 78 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---H
Confidence 368999999999999999999999998876554 456677777788654 58889999999999999875566655 5
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe-cCcccCCcccc-------cCCCeEEE-EeC--CHHHHHH
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV-DAPVSGGVKRA-------SMGELTIM-AAG--TEESLKS 293 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l-dapv~g~~~~a-------~~g~l~~~-~gg--~~~~~~~ 293 (988)
++.+.++++.+|.-......... ...++ .+..++ -+| .+|... ..|...++ +.. +.+..+.
T Consensus 79 ei~~~l~~g~iVs~aaG~~i~~~---~~~~~---~~~~VvrvmP--n~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~ 150 (314)
T TIGR00465 79 EIQPLLKEGKTLGFSHGFNIHFV---QIVPP---KDVDVVMVAP--KGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAI 150 (314)
T ss_pred HHHhhCCCCcEEEEeCCccHhhc---cccCC---CCCcEEEECC--CCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHH
Confidence 67788888876655555543332 22222 123333 223 223332 44543443 332 4667889
Q ss_pred HHHHHHhcCCe-------EE--EE-eCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 001973 294 TGSVLSALSEK-------LY--VI-KGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357 (988)
Q Consensus 294 ~~~ll~~~g~~-------v~--~~-~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~ 357 (988)
+..+++.+|.. .+ .+ .+-.+... .+.....+++...+.-..+.|++++..+..+.+.
T Consensus 151 ~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t-------~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 151 ALAYAKAIGGGRAGVLETTFKEETESDLFGEQA-------VLCGGLTALIKAGFDTLVEAGYQPELAYFETVHE 217 (314)
T ss_pred HHHHHHHcCCCccceeechhHhhhhHHhcCcch-------hHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999976 21 10 01111111 1222222222222233379999999988876543
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=103.29 Aligned_cols=253 Identities=17% Similarity=0.127 Sum_probs=158.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----------C------------------CcccCCH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----------G------------------GLIANSP 196 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------G------------------~~~~~s~ 196 (988)
.+.|+|||.|.||+.||+.-+..|++|+++|++.+...+..+. + +..+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 4689999999999999999999999999999998876654331 1 2346788
Q ss_pred HHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecC-cccCCcc
Q 001973 197 AEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDA-PVSGGVK 273 (988)
Q Consensus 197 ~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~lda-pv~g~~~ 273 (988)
.+++.++|+|+-++-...+++.-+| +.+-...++.+++. ..|++-..+ .++..+. .++.|.||... ||+.-.+
T Consensus 91 ~~~v~dadliiEAivEn~diK~~lF--~~l~~~ak~~~il~-tNTSSl~lt-~ia~~~~~~srf~GlHFfNPvPvMKLvE 166 (298)
T KOG2304|consen 91 SDAVSDADLIIEAIVENLDIKRKLF--KDLDKIAKSSTILA-TNTSSLSLT-DIASATQRPSRFAGLHFFNPVPVMKLVE 166 (298)
T ss_pred HHhhhhhHHHHHHHHHhHHHHHHHH--HHHHhhcccceEEe-ecccceeHH-HHHhhccChhhhceeeccCCchhHHHhh
Confidence 8888889998887766655555555 44444455555554 333333222 2222222 23457888765 5554433
Q ss_pred cccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 001973 274 RASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNI 353 (988)
Q Consensus 274 ~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~ 353 (988)
-..... .+++.+..+..+-+.+|+..+..-+.+| ++.|-+ .+-++.|++++.++-..+.+.+...
T Consensus 167 Vir~~~------TS~eTf~~l~~f~k~~gKttVackDtpG------FIVNRl---LiPyl~ea~r~yerGdAskeDIDta 231 (298)
T KOG2304|consen 167 VIRTDD------TSDETFNALVDFGKAVGKTTVACKDTPG------FIVNRL---LIPYLMEAIRMYERGDASKEDIDTA 231 (298)
T ss_pred hhcCCC------CCHHHHHHHHHHHHHhCCCceeecCCCc------hhhhHH---HHHHHHHHHHHHHhcCCcHhhHHHH
Confidence 222222 4678888899999999998776334555 334433 4567999999999999999999888
Q ss_pred HHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHH--HHhCCCCchHHHHHHHHHHHHHHcCCCCCCh
Q 001973 354 ITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARE--CLSQRVPLHISTIAHQLFLAGSAAGWGRQDD 426 (988)
Q Consensus 354 l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~--a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~ 426 (988)
...|++... +| +.--||.+ ++...--+.-..+. ....-.|.|++.....--+...+.|.|.++|
T Consensus 232 MklGagyPM-----GP-fEL~DyvG---LDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Y 297 (298)
T KOG2304|consen 232 MKLGAGYPM-----GP-FELADYVG---LDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKY 297 (298)
T ss_pred HhccCCCCC-----Ch-HHHHHHhh---HHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceec
Confidence 777664322 11 11122221 11111111211111 1223457888887777777777777776654
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-09 Score=117.64 Aligned_cols=105 Identities=19% Similarity=0.201 Sum_probs=90.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||+.+|+.|...|++|++||++++..... ...++++.+++++||+|++++|...+++.++. ++
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~ 219 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFD--KA 219 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HH
Confidence 3589999999999999999999999999999998654322 23466899999999999999999988888774 57
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+.+.+++|.++|+++-+..-....+.+.+.+
T Consensus 220 ~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 220 MFDHVKKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred HHhcCCCCcEEEEcCCccccCHHHHHHHHHc
Confidence 7888999999999998888888888888876
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-09 Score=118.33 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=97.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|.+|.+||++....+...+.|+...+++++++.+||+|++++|.+.+++.++. ++
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~--~~ 276 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFN--KE 276 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhC--HH
Confidence 4699999999999999999999999999999986544444555777778999999999999999999999999884 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.+..+++|.++|+++.+..-....+.+.+.+.
T Consensus 277 ~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 277 RIAKMKKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred HHhhCCCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 88899999999999999999999999999863
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-09 Score=117.02 Aligned_cols=103 Identities=16% Similarity=0.167 Sum_probs=89.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc-ccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL-IANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~-~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|||||+|.||..+|+.|...|++|++|||+... .|.. ...++++++++||+|++++|...+++.++. .
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~--~ 193 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMIN--S 193 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcC--H
Confidence 469999999999999999998889999999997532 2332 256899999999999999999999998874 5
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+.+..+++|.++|++|.+.+.....+.+.+.+
T Consensus 194 ~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 194 KMLSLFRKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 67888999999999999999999999999976
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.9e-09 Score=116.37 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=88.8
Q ss_pred CCeEEEEccchHHHHHHHHH-HhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHL-LRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L-~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|||||+|.||..+|++| ...|.+|++||+++.... ..++...+++.+++++||+|++++|.....+.++. .
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~--~ 220 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFN--A 220 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcC--H
Confidence 36999999999999999999 456889999999875431 22345567899999999999999999887776552 3
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+..+.+++|.++|++|++.......+.+.+.+
T Consensus 221 ~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~ 252 (332)
T PRK08605 221 DLFKHFKKGAVFVNCARGSLVDTKALLDALDN 252 (332)
T ss_pred HHHhcCCCCcEEEECCCCcccCHHHHHHHHHh
Confidence 56788999999999999999999999998876
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-07 Score=94.46 Aligned_cols=200 Identities=20% Similarity=0.268 Sum_probs=139.8
Q ss_pred CeEEEEccchH--------------------HHHHHHHHHhCCCeEEEEeCCh-----hHHHHHHhcCCcccCCHHHHhc
Q 001973 147 TRVGFIGLGAM--------------------GFGMATHLLRSNFTVIGYDVYR-----PTLTKFQNVGGLIANSPAEAAK 201 (988)
Q Consensus 147 ~kIgiIG~G~m--------------------G~~lA~~L~~~G~~V~v~dr~~-----~~~~~l~~~G~~~~~s~~e~~~ 201 (988)
|||+|.|.|+- |..||-.++++||+|.+.|.|. +..++....|+.++++..++++
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~ 81 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE 81 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence 57888888863 7889999999999999998764 4466777889999999999999
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHH-HHHHHHHHhcCCCceEecCcccCCcccccCCCe
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFV-SQLERRLQFEGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~-~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
.+++.++.+|-....-.+. ++++++++.|.+|++++|++|-.- ..+...+.....++..-+.. -.+.++......
T Consensus 82 ~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmH-PAgvPGtp~h~~ 157 (340)
T COG4007 82 HGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMH-PAGVPGTPQHGH 157 (340)
T ss_pred cceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccC-CCCCCCCCCCce
Confidence 9999999999886666666 688999999999999999988643 33444443322222222211 112222222233
Q ss_pred EEEEe--------CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHH
Q 001973 281 TIMAA--------GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLF 351 (988)
Q Consensus 281 ~~~~g--------g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~ 351 (988)
.++.| ..++..+++.++.+..|+.+|++ +...-+.+.=...++.+..+.++.+-..++.+ .|.+.+.+-
T Consensus 158 yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~--padv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIe 235 (340)
T COG4007 158 YVIAGRSTEGKELATEEQIERCVELAESTGKEVYVL--PADVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIE 235 (340)
T ss_pred EEEeccCCCceeeccHHHHHHHHHHHHhcCCceEec--CHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 44443 14678899999999999999986 44444444444556666677777777777663 566655444
Q ss_pred H
Q 001973 352 N 352 (988)
Q Consensus 352 ~ 352 (988)
+
T Consensus 236 k 236 (340)
T COG4007 236 K 236 (340)
T ss_pred H
Confidence 3
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=115.35 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=92.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|+.|...|++|.+|||++.... ....|.. ..++.+++++||+|++++|.+.+++.++. ++
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~--~~ 225 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMIN--EE 225 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccC--HH
Confidence 46999999999999999999999999999999875432 2333544 35899999999999999999998998884 46
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
..+.+++|.++|+++++..-....+.+.+.+
T Consensus 226 ~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 226 RLKLMKPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred HHhcCCCCeEEEECcCchhcCHHHHHHHHHc
Confidence 7888999999999999999999999999976
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.4e-09 Score=122.17 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=88.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhccCCchhhhccccccccCC-CCc-chHHHHHHhHH----
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQ-FGIHPWVLYDI---ISNAAGNSWIFKNYIPNLLRGD-AKL-HFLNAFIQNLG---- 70 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~-~Gld~~~~~~~---l~~~~~~s~~~~~~~~~~~~~~-~~~-f~l~l~~KDl~---- 70 (988)
|+||++.++++++++||+.++++ +|+|++.+.++ ++.+.++||+++.+.+.+..++ |.| |.++++.||++
T Consensus 189 lv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGT 268 (493)
T PLN02350 189 MVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGT 268 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccch
Confidence 68999999999999999999999 59999999999 5689999999999999888775 988 99999999999
Q ss_pred --HHHHHHHhcCCCCcH-HHHHHHHHHHHh
Q 001973 71 --IALDMAKTLAFPLPL-LAVAHQQLILGL 97 (988)
Q Consensus 71 --la~~~a~~~g~~~p~-~~~~~~~~~~a~ 97 (988)
++.+.|.+.|+|+|+ .+++.+.|....
T Consensus 269 g~w~~~~A~~lgv~~p~i~~av~~r~~s~~ 298 (493)
T PLN02350 269 GKWTVQQAAELSVAAPTIAASLDARYLSGL 298 (493)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHhcc
Confidence 999999999999998 888888777443
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-09 Score=107.77 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=89.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|+.+|+.|...|.+|++|||+..........+.. ..+++|+++.||+|++++|...+.+.++. ++
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~-~~~l~ell~~aDiv~~~~plt~~T~~li~--~~ 112 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVE-YVSLDELLAQADIVSLHLPLTPETRGLIN--AE 112 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEE-ESSHHHHHHH-SEEEE-SSSSTTTTTSBS--HH
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccce-eeehhhhcchhhhhhhhhccccccceeee--ee
Confidence 4699999999999999999999999999999998877655565663 45999999999999999998777777664 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..+++|.++|+++-...-.-..+.+.+.+
T Consensus 113 ~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 113 FLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp HHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred eeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 7788999999999998888788888888876
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-07 Score=103.05 Aligned_cols=155 Identities=24% Similarity=0.306 Sum_probs=106.2
Q ss_pred HHHHHHhCC--CeEEEEeCChhHHHHHHhcCCcccC-CHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEE
Q 001973 161 MATHLLRSN--FTVIGYDVYRPTLTKFQNVGGLIAN-SPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASII 237 (988)
Q Consensus 161 lA~~L~~~G--~~V~v~dr~~~~~~~l~~~G~~~~~-s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivI 237 (988)
+|+.|.++| ++|++||++++..+...+.|+.... +..+.+.++|+||+|+|-.. +..++ +++.+.++++.+|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~-~~~~l---~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSA-IEDVL---EEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHH-HHHHH---HHHHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHH-HHHHH---HHhhhhcCCCcEEE
Confidence 588899999 7899999999999988888875322 22678899999999999766 66666 68888899999999
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCC----cccc----cCCCeEEEEeC---CHHHHHHHHHHHHhcCCeE
Q 001973 238 LSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGG----VKRA----SMGELTIMAAG---TEESLKSTGSVLSALSEKL 305 (988)
Q Consensus 238 d~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~----~~~a----~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v 305 (988)
|.++++-.....+.+.++ .+..|+.+ |++|+ +..+ -.|...+++.+ +.+.++.++.+++.+|.++
T Consensus 77 Dv~SvK~~~~~~~~~~~~---~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~ 153 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLP---EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARV 153 (258)
T ss_dssp E--S-CHHHHHHHHHHHT---SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EE
T ss_pred EeCCCCHHHHHHHHHhcC---cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEE
Confidence 999999988888877765 24566665 55555 3222 24666677643 4578899999999999998
Q ss_pred EEEeCCcchHHHHHHHHH
Q 001973 306 YVIKGGCGAGSGVKMANQ 323 (988)
Q Consensus 306 ~~~~g~~g~a~~~Kl~~N 323 (988)
+.+ ..-..-..+-+++.
T Consensus 154 ~~~-~~eeHD~~~A~vsh 170 (258)
T PF02153_consen 154 VEM-DAEEHDRIMAYVSH 170 (258)
T ss_dssp EE---HHHHHHHHHHHTH
T ss_pred EEc-CHHHHHHHHHHHHH
Confidence 875 33333334434333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=110.66 Aligned_cols=193 Identities=18% Similarity=0.149 Sum_probs=117.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||.++|++|...|++|++||+.....+.....|... .++.++++.||+|++++|++.+ +.++. ++
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~t-~~V~~--~e 91 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQQ-AHVYK--AE 91 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChHH-HHHHH--HH
Confidence 35899999999999999999999999999998755555555667765 4899999999999999999665 77774 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceE-ecCcccCCcc-c----ccCCCeEEEE---eCCHHHHHHHHH
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKL-VDAPVSGGVK-R----ASMGELTIMA---AGTEESLKSTGS 296 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~-ldapv~g~~~-~----a~~g~l~~~~---gg~~~~~~~~~~ 296 (988)
+.+.+++|.+++-.-.-..... ...+. .++.. +-+|=..|+. + ...|.-.+++ -.+..+.+....
T Consensus 92 il~~MK~GaiL~f~hgfni~~~----~i~pp--~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala 165 (335)
T PRK13403 92 VEENLREGQMLLFSHGFNIHFG----QINPP--SYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALA 165 (335)
T ss_pred HHhcCCCCCEEEECCCcceecC----ceeCC--CCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHH
Confidence 8899999998875443221111 11111 22322 2233211111 0 1112211111 122345666777
Q ss_pred HHHhcCCe---EEEEeCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 001973 297 VLSALSEK---LYVIKGGCGAGSGVKMA--NQLLAGVHIASAAEAMAFGARLGLNTRVL 350 (988)
Q Consensus 297 ll~~~g~~---v~~~~g~~g~a~~~Kl~--~N~~~~~~~~~~~Ea~~la~~~Gid~~~~ 350 (988)
....+|.. ++. .....-.-.-|. +..++.....++.-.+.-....|.+|+..
T Consensus 166 ~a~~iG~~ragv~~--ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~A 222 (335)
T PRK13403 166 YAKGVGCTRAGVIE--TTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIA 222 (335)
T ss_pred HHHHcCCCceeEEe--cchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 77777754 222 122221222222 22445555566666667778888887654
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-08 Score=102.57 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=86.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhc-CC----cccCCHHHHhccCcEEEEEcCChHH-HHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNV-GG----LIANSPAEAAKDVGVLVIMVTNEAQ-AESV 219 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~-G~----~~~~s~~e~~~~aDvV~l~vp~~~~-~~~v 219 (988)
++|+|||+|.||..++..|.+.| ++|++|||++++.+++.+. +. ....+..++++++|+|++|+|.+.. ++.+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~ 99 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDEL 99 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCC
Confidence 58999999999999999999996 8999999999988876654 32 2355777778999999999998764 3333
Q ss_pred HccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 220 LYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
.+. ...++++++++|+++.++.+ .+.+.+.+ .|.+++++
T Consensus 100 ~~~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~--~g~~~v~g 138 (155)
T cd01065 100 PLP----PSLLKPGGVVYDVVYNPLET--PLLKEARA--LGAKTIDG 138 (155)
T ss_pred CCC----HHHcCCCCEEEEcCcCCCCC--HHHHHHHH--CCCceeCC
Confidence 321 23467899999999986654 67777766 46667654
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-08 Score=114.03 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=89.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++||++++....... .....++.+++++||+|++++|.+.+++.++. ++
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~--~~ 211 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIIN--QQ 211 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhH--HH
Confidence 369999999999999999999999999999997654321111 11245789999999999999999999999885 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 212 ~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 212 LLEQLPDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred HHhcCCCCcEEEECCCccccCHHHHHHHHhc
Confidence 7888999999999998888888888888876
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-07 Score=99.37 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=115.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhc-cCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAK-DVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~-~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
...+|||||.|+||.-+|..|.++||.|.+.||+. --+..+.-|....+.+.+.++ ..|+|++|+.-.. ++.++
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsils-iekil--- 125 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILS-IEKIL--- 125 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhh-HHHHH---
Confidence 34689999999999999999999999999999976 333334457777777877664 6899999997644 66665
Q ss_pred cchhhh-CCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCcccccCCC-eEEEE----eCC----HHHHH
Q 001973 224 LGAVSA-LSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKRASMGE-LTIMA----AGT----EESLK 292 (988)
Q Consensus 224 ~~i~~~-l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~a~~g~-l~~~~----gg~----~~~~~ 292 (988)
...-.. ++.|++++|..++.--....+.+++++ ++..+.+ |++|+.......+ +.++. .|. .+.++
T Consensus 126 atypfqrlrrgtlfvdvlSvKefek~lfekYLPk---dfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE 202 (480)
T KOG2380|consen 126 ATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK---DFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCE 202 (480)
T ss_pred HhcCchhhccceeEeeeeecchhHHHHHHHhCcc---ccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHH
Confidence 233333 788999999999988888888899986 5777776 5555542333333 22222 243 78899
Q ss_pred HHHHHHHhcCCeEEEE
Q 001973 293 STGSVLSALSEKLYVI 308 (988)
Q Consensus 293 ~~~~ll~~~g~~v~~~ 308 (988)
.+.++|...+.+.+++
T Consensus 203 ~fleIf~cegckmVem 218 (480)
T KOG2380|consen 203 FFLEIFACEGCKMVEM 218 (480)
T ss_pred HHHHHHHhcCCeEEEE
Confidence 9999999999888776
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.4e-09 Score=114.66 Aligned_cols=111 Identities=18% Similarity=0.208 Sum_probs=94.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcc-CCchhhhccccccccCCCCcch-HHHHHHh---HHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQ--FGIHPWVLYDIISNAA-GNSWIFKNYIPNLLRGDAKLHF-LNAFIQN---LGIAL 73 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~--~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~f~-l~l~~KD---l~la~ 73 (988)
++||++.++++.+++|++.|+++ +|+|++.++++++.|+ ++|++++.+.+.+.+++ . |+ +.++.|| ++++.
T Consensus 174 l~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~-~-~~~~~~~~kd~~~~~~~~ 251 (301)
T PRK09599 174 MVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDP-K-LDEISGYVEDSGEGRWTV 251 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCC-C-HHHHHHHHHhhCcHHHHH
Confidence 58999999999999999999999 9999999999999876 79999999888885442 1 33 4445555 59999
Q ss_pred HHHHhcCCCCcHHHHHHH-HHHHHhhCcCCCCCchhHHHHH
Q 001973 74 DMAKTLAFPLPLLAVAHQ-QLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 74 ~~a~~~g~~~p~~~~~~~-~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
+.|.+.|+|+|+.+.+.. .|....+.|++..|.+++.+++
T Consensus 252 ~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f 292 (301)
T PRK09599 252 EEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGF 292 (301)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhc
Confidence 999999999999999555 5889999999999998887764
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-08 Score=109.81 Aligned_cols=118 Identities=22% Similarity=0.263 Sum_probs=95.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.+++||||+|.+|+.+|..+...|.+|.+||+...+- .....+....+++.+++++||+|.+.+|-+.+++.++. .+
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~--~~ 218 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLIN--AE 218 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccC--HH
Confidence 3699999999999999999999999999999943332 12223556678999999999999999999999998885 45
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
.+..+++|.++|+++-+..-....+.+.+.+.......+|.
T Consensus 219 ~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDV 259 (324)
T COG0111 219 ELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDV 259 (324)
T ss_pred HHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecC
Confidence 67789999999999998888888898888763222234543
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-07 Score=101.27 Aligned_cols=273 Identities=14% Similarity=0.121 Sum_probs=164.2
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC--C-----eEEEEeCChh------HHHHH-Hhc--------------CCcccCCH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN--F-----TVIGYDVYRP------TLTKF-QNV--------------GGLIANSP 196 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G--~-----~V~v~dr~~~------~~~~l-~~~--------------G~~~~~s~ 196 (988)
...||+|||.|+||+++|+.+.++- + +|..|-+..+ ++.+. +.. ++.+.+|+
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 3469999999999999999998742 2 5777754322 22222 221 23468899
Q ss_pred HHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCC----HH-HHHHHHHHHHhc-CCCceEecCcccC
Q 001973 197 AEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVS----PG-FVSQLERRLQFE-GKDLKLVDAPVSG 270 (988)
Q Consensus 197 ~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~----p~-~~~~l~~~l~~~-~~g~~~ldapv~g 270 (988)
.+++.++|+++..+|... +..++ +++..+++++...|.++.+- ++ ..+-+.+.+.+. +-...++.+|-..
T Consensus 100 ~ea~~dADilvf~vPhQf-~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA 175 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQF-IPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIA 175 (372)
T ss_pred HHHhccCCEEEEeCChhh-HHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchH
Confidence 999999999999999854 77777 68888899998888877432 22 133344444332 1223344444333
Q ss_pred CcccccCCCeEEEEeCCHHHHH-HHHHHHHhcCCeEEEEeC----------------CcchHHHHHHHHHHHHHHHHHHH
Q 001973 271 GVKRASMGELTIMAAGTEESLK-STGSVLSALSEKLYVIKG----------------GCGAGSGVKMANQLLAGVHIASA 333 (988)
Q Consensus 271 ~~~~a~~g~l~~~~gg~~~~~~-~~~~ll~~~g~~v~~~~g----------------~~g~a~~~Kl~~N~~~~~~~~~~ 333 (988)
.......-.-..+.+.++.... .+..+|+.--..+..+.+ ..|....+.+.+|...+++..++
T Consensus 176 ~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl 255 (372)
T KOG2711|consen 176 SEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGL 255 (372)
T ss_pred HHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhH
Confidence 3322222222333333333333 477777765444333211 34667777788999999999999
Q ss_pred HHHHHHHHHcC-C-CHHHHHHHHHhc-------CCCccccccccccccCCCCCCCchhhHH------------HHHHHHH
Q 001973 334 AEAMAFGARLG-L-NTRVLFNIITDS-------GGSSWMFENRVPHMLDNDYTPYSALDIF------------VKDMGII 392 (988)
Q Consensus 334 ~Ea~~la~~~G-i-d~~~~~~~l~~~-------~~~s~~~~~~~~~~~~~~~~~~~~l~~~------------~kDl~~~ 392 (988)
.|+..+++.+= - .+.++.+...-+ .+.+. .....+.... -+++.. ....+.+
T Consensus 256 ~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr---~~aeafaktg----k~~~~~E~ell~Gq~~QG~~Ta~~V 328 (372)
T KOG2711|consen 256 LEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNR---KVAEAFAKTG----KSLEELEKELLNGQKLQGPATAKEV 328 (372)
T ss_pred HHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccH---HHHHHHHHcC----CCHHHHHHHhhCCCcccCcHHHHHH
Confidence 99999998853 2 455554431111 11111 1111111110 011111 2234577
Q ss_pred HHHHHhCCC--CchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Q 001973 393 ARECLSQRV--PLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYET 435 (988)
Q Consensus 393 ~~~a~~~gi--~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~ 435 (988)
.++.++.|+ ..|++.++++++. +++...++++.++.
T Consensus 329 y~~L~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~ 366 (372)
T KOG2711|consen 329 YELLQKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRN 366 (372)
T ss_pred HHHHHHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhc
Confidence 889999998 7999999999874 45566777777764
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.3e-08 Score=106.77 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=93.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.+++||||+|.+|+++|+++...|.+|..|||++. -+.-...+....+ +.|++++||+|.+.+|...+.+.++. .+
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin--~~ 221 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLIN--AE 221 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcC--HH
Confidence 47999999999999999999988899999999976 2333333566666 99999999999999999999999885 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.++.+++|.++|+++-+..-....+.+.+.+.
T Consensus 222 ~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 222 ELAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred HHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 78889999999999999888888999988873
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-08 Score=115.82 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=93.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++||++... +.....|....+++.+++++||+|++++|...+++.++. ++
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~ 214 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIG--AE 214 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcC--HH
Confidence 368999999999999999999999999999985322 223445776677899999999999999999988888874 46
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.+..+++|.++|+++.+..-....+.+.+.+.
T Consensus 215 ~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 215 ELAKMKKGVIIVNCARGGIIDEAALYEALEEG 246 (525)
T ss_pred HHhcCCCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence 67789999999999999998889999998763
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=7e-08 Score=115.30 Aligned_cols=107 Identities=19% Similarity=0.238 Sum_probs=92.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++||++... +.....|.... ++.+++++||+|++++|.+.+++.++. .+
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~--~~ 215 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIG--AE 215 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcC--HH
Confidence 469999999999999999999999999999986432 23344566665 899999999999999999998988874 46
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.++.+++|.++|+++.+..-....+.+.+.+
T Consensus 216 ~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 216 ELAKMKPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred HHhcCCCCeEEEECCCCceeCHHHHHHHHhc
Confidence 7888999999999999999988999998876
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=95.01 Aligned_cols=228 Identities=16% Similarity=0.135 Sum_probs=135.3
Q ss_pred CCeEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHH
Q 001973 169 NFTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFV 247 (988)
Q Consensus 169 G~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~ 247 (988)
.++|++|+|++++.+.+.+. |+..+++..++++++|+||+||+ |.++++++ ..+.+.+.++++||.++...+-.
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi~~~- 83 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGVTLE- 83 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCCCHH-
Confidence 37899999999999888664 88888899999999999999999 77799988 56666666778888887665433
Q ss_pred HHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC--CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHH
Q 001973 248 SQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG--TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLL 325 (988)
Q Consensus 248 ~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~ 325 (988)
.+.+.+.. +..++-+ +-..+.....|...+..+. +++..+.++.+|+.+|..+..-.........+--+...+
T Consensus 84 -~l~~~~~~---~~~ivR~-mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~ 158 (245)
T TIGR00112 84 -KLSQLLGG---TRRVVRV-MPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAY 158 (245)
T ss_pred -HHHHHcCC---CCeEEEE-CCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHH
Confidence 34444432 1223321 1122333344543333332 456678899999999976543111122222222233344
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccc--ccccc-CCCCCCCchhhHHHHHHHHHHHHHHhCCC
Q 001973 326 AGVHIASAAEAMAFGARLGLNTRVLFNIITDSG-GSSWMFENR--VPHML-DNDYTPYSALDIFVKDMGIIARECLSQRV 401 (988)
Q Consensus 326 ~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~-~~s~~~~~~--~~~~~-~~~~~~~~~l~~~~kDl~~~~~~a~~~gi 401 (988)
.+.++..+. ..+.+.|+++++..+++.+.. |...++... .+.-+ +.=.+|+.+. ...++..++.|+
T Consensus 159 ~~~~~~al~---~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT-------~~gl~~Le~~~~ 228 (245)
T TIGR00112 159 VFLFIEALA---DAGVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTT-------IAGLAVLEEKGV 228 (245)
T ss_pred HHHHHHHHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHH-------HHHHHHHHHCCh
Confidence 444333333 348889999999999888764 333222211 11111 1112344332 233455566676
Q ss_pred CchHHHHHHHHHHHH
Q 001973 402 PLHISTIAHQLFLAG 416 (988)
Q Consensus 402 ~~pi~~a~~~~~~~a 416 (988)
.--+.+++...++++
T Consensus 229 ~~~~~~a~~aa~~r~ 243 (245)
T TIGR00112 229 RGAVIEAVEAAVRRS 243 (245)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666655544
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-07 Score=100.72 Aligned_cols=106 Identities=18% Similarity=0.100 Sum_probs=80.9
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhC--CCeEE-EEeCChhHHHHHHhc-CC-cccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRS--NFTVI-GYDVYRPTLTKFQNV-GG-LIANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
|+++||||||+|.||..++.+|.+. ++++. +|||++++.+++.+. |. ...+++++++.++|+|++|+|+... .+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e 82 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RA 82 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HH
Confidence 4457999999999999999999873 78865 789999998877654 53 5678999999999999999998764 44
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+. ...+..|+-++..|.......+++.+...+
T Consensus 83 ~~------~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~ 114 (271)
T PRK13302 83 IV------EPVLAAGKKAIVLSVGALLRNEDLIDLARQ 114 (271)
T ss_pred HH------HHHHHcCCcEEEecchhHHhHHHHHHHHHH
Confidence 33 223456666666676666667788777766
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-07 Score=105.39 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=88.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHH------------HhcCCcccCCHHHHhccCcEEEEEcCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF------------QNVGGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l------------~~~G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
.++|||||+|.||..+|+.|...|.+|++|||+....... ...+. ...++.+++++||+|++++|..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt 237 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLT 237 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCC
Confidence 3699999999999999999999999999999974321111 11112 3468999999999999999998
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
...+.++. ++.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 238 ~~T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 238 KETAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred hHhhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 88888874 567888999999999998887777888888876
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-07 Score=105.21 Aligned_cols=104 Identities=18% Similarity=0.117 Sum_probs=85.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChH----HHHHHHc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEA----QAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~----~~~~vl~ 221 (988)
.++|||||+|+||..+|+.|...|++|.+||+..... .+.....++++++++||+|++++|... ..+.++.
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~ 190 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLD 190 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCC
Confidence 3689999999999999999999999999999854321 122234689999999999999999765 3555553
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
++.+..+++|.++|++|.+..-....+.+.+.+
T Consensus 191 --~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 191 --EAFLASLRPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred --HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh
Confidence 456788999999999999999999999988876
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-07 Score=89.23 Aligned_cols=92 Identities=25% Similarity=0.274 Sum_probs=69.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh-HHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP-TLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|+|||.|..|.+.|.||...|.+|++-.|..+ ..++..+.|..+ .+..|+++++|+|++.+|+..+ .+++. +
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD~~q-~~vy~--~ 79 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPDEVQ-PEVYE--E 79 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-HHHH-HHHHH--H
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCChHHH-HHHHH--H
Confidence 35999999999999999999999999999988876 777888888875 5899999999999999998764 44543 6
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+++++|++++-...
T Consensus 80 ~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 80 EIAPNLKPGATLVFAHG 96 (165)
T ss_dssp HHHHHS-TT-EEEESSS
T ss_pred HHHhhCCCCCEEEeCCc
Confidence 78999999998875443
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=106.50 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=90.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|..+|+.+...|.+|.+||+++... ..+.....+++++++.||+|.+++|...+.+.++. ++
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~--~~ 224 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIG--AE 224 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccC--HH
Confidence 4699999999999999999999999999999874321 12345567899999999999999999888888874 45
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..+++|.++|+++.+..-....+.+.+.+
T Consensus 225 ~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~ 255 (409)
T PRK11790 225 ELALMKPGAILINASRGTVVDIDALADALKS 255 (409)
T ss_pred HHhcCCCCeEEEECCCCcccCHHHHHHHHHc
Confidence 7788999999999999998888899998876
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.2e-07 Score=100.73 Aligned_cols=104 Identities=19% Similarity=0.151 Sum_probs=88.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|+.+|+.+...|.+|.+||++.... ..+.. ..++++++++||+|++++|-..+.+.++. ++
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~--~~ 217 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIA--YK 217 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccC--HH
Confidence 4699999999999999999999999999999964321 12333 45899999999999999999988888875 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 218 ~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 218 ELKLLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred HHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 7788999999999999888888889888876
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.2e-07 Score=101.04 Aligned_cols=107 Identities=12% Similarity=0.109 Sum_probs=89.2
Q ss_pred CCeEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLL-RSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+++||||+|.+|..+|+.+. ..|.+|.+||+..... .....|... .++.+++++||+|++++|-..+.+.++. .
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~-~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~--~ 220 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKE-AEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFG--A 220 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchh-hHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccC--H
Confidence 469999999999999999997 7889999999874321 122335544 4899999999999999999998988874 4
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 221 ~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 221 EQFAKMKSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 67888999999999999888888889888876
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-06 Score=97.96 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=86.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|+.+|+.|...|.+|.+||+.... .... ..++.+++++||+|++++|-..+.+.++. ++
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~--~~ 218 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEHTRHLIG--AR 218 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChHHhcCcC--HH
Confidence 469999999999999999999999999999986421 1112 34899999999999999999988888875 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 219 ~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 219 ELALMKPGALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 7888999999999998888888888888876
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=78.66 Aligned_cols=94 Identities=15% Similarity=0.075 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHH
Q 001973 313 GAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGII 392 (988)
Q Consensus 313 g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~ 392 (988)
..++.+|++.|.+.++.+++++|+..+|++.|+|..++.+.++.....+. .++.. .+++.-.++.||...+
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~-------~~~~p--g~g~GG~ClpkD~~~L 72 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGP-------HYLRP--GPGFGGSCLPKDPYAL 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTS-------SS-S---SSS--SSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccccc-------ccCCC--CCCCCCcchhhhHHHH
Confidence 46899999999999999999999999999999999999999887543331 11111 1346667899999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHH
Q 001973 393 ARECLSQRVPLHISTIAHQLFLA 415 (988)
Q Consensus 393 ~~~a~~~gi~~pi~~a~~~~~~~ 415 (988)
...+++.|.+.++++++.+....
T Consensus 73 ~~~~~~~g~~~~ll~~~~~~N~~ 95 (96)
T PF00984_consen 73 IYLAKELGYPPQLLEAVININER 95 (96)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhcCC
Confidence 99999999999999999888764
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.9e-06 Score=93.46 Aligned_cols=141 Identities=12% Similarity=0.032 Sum_probs=108.5
Q ss_pred HHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc
Q 001973 109 LVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV 188 (988)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 188 (988)
++..+++..+......+.+|.+... ...+.....++|||+|+|.+|+.+|++|...|..+..+.|++...+...+.
T Consensus 129 il~~~R~~~~g~~~~~~g~w~~~~~----~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~ 204 (336)
T KOG0069|consen 129 LLALLRRFSEGNEMVRNGGWGWAGG----WPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEY 204 (336)
T ss_pred HHHHHhhhhhhhhhhhcCCccccCC----ccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHh
Confidence 4444566555544445556622221 111222234699999999999999999999996677778888777777666
Q ss_pred CCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 189 GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 189 G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+.. ..+..+.+.++|+|++|+|....++.++. +.+..++++|.++|+++-+..-.-+.+.+.+.+
T Consensus 205 ~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liN--k~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 205 YAE-FVDIEELLANSDVIVVNCPLTKETRHLIN--KKFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred ccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhh--HHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 655 56888999999999999999999999986 678999999999999999988888889988876
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.7e-07 Score=98.99 Aligned_cols=104 Identities=11% Similarity=0.063 Sum_probs=87.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|..+|+.+...|.+|.+||++... .. .. ...++++++++||+|++++|-....+..+. ++
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~--~~ 218 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLIN--AE 218 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccC--HH
Confidence 469999999999999999999999999999986431 11 11 135899999999999999999888888875 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.+..+++|.++|+++-+..-....+.+.+.+.
T Consensus 219 ~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g 250 (314)
T PRK06932 219 TLALMKPTAFLINTGRGPLVDEQALLDALENG 250 (314)
T ss_pred HHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 78889999999999988888888888888763
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-05 Score=81.82 Aligned_cols=127 Identities=16% Similarity=0.107 Sum_probs=83.9
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|||+|||. |.||..++..|.++||.|+ +.+||+||+|+|-.. +.+++ ++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~~-~~~~i---~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPIDA-ALNYI---ES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHHH-HHHHH---HH
Confidence 58999999 9999999999999999986 258999999999765 34444 22
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCcccccCC--CeEEEEe--CCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKRASMG--ELTIMAA--GTEESLKSTGSVLSA 300 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~a~~g--~l~~~~g--g~~~~~~~~~~ll~~ 300 (988)
+. .+++|.++++-... +. ...|+.. |++| |..+..+ ...+++. .+++..+.++.+++
T Consensus 51 ~~------~~v~Dv~SvK~~i~----~~------~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~- 112 (197)
T PRK06444 51 YD------NNFVEISSVKWPFK----KY------SGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEINEMFR- 112 (197)
T ss_pred hC------CeEEeccccCHHHH----Hh------cCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHHHHHc-
Confidence 21 37999999886422 11 2356665 7776 4333332 2233332 34566788899988
Q ss_pred cCCeEEEEeCCcchHHHHHHHHH
Q 001973 301 LSEKLYVIKGGCGAGSGVKMANQ 323 (988)
Q Consensus 301 ~g~~v~~~~g~~g~a~~~Kl~~N 323 (988)
|.+++.+ .+-..-..+-+++.
T Consensus 113 -G~~~~~~-t~eeHD~~~A~ish 133 (197)
T PRK06444 113 -GYHFVEM-TADEHDLLMSEIMV 133 (197)
T ss_pred -CCEEEEe-CHHHHHHHHHHHHH
Confidence 7777774 34444444444433
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.1e-07 Score=97.76 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=65.4
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|+|||.| .||.+||.+|.++|++|++|+++. .++++++++||+||+|++.+..++.+.
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~~~v~~~~--- 220 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRPRLIDADW--- 220 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCChhcccHhh---
Confidence 35799999996 999999999999999999998763 378899999999999999988666543
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
+++|.+|||+|..
T Consensus 221 ------ik~GaiVIDvgin 233 (301)
T PRK14194 221 ------LKPGAVVIDVGIN 233 (301)
T ss_pred ------ccCCcEEEEeccc
Confidence 6799999999875
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=96.06 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=83.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc--CCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA--NSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~--~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+|+|||+|.||..+|+.|...|.+|+++||++++.+.+.+.|.... +++.+.++++|+||.++|..-..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~------- 223 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLT------- 223 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhC-------
Confidence 469999999999999999999999999999999988877776665432 35677889999999999875311
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
+...+.++++.++||+++..-++-.+.+ .+ .|.+.+-+|
T Consensus 224 ~~~l~~~k~~aliIDlas~Pg~tdf~~A---k~--~G~~a~~~~ 262 (287)
T TIGR02853 224 ADVLSKLPKHAVIIDLASKPGGTDFEYA---KK--RGIKALLAP 262 (287)
T ss_pred HHHHhcCCCCeEEEEeCcCCCCCCHHHH---HH--CCCEEEEeC
Confidence 2345667889999999987555433333 23 455555444
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=99.58 Aligned_cols=104 Identities=16% Similarity=0.082 Sum_probs=83.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHH----HHHHHc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQ----AESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~----~~~vl~ 221 (988)
.++|||||+|+||+.+|+.|...|.+|.+||+..... ... ....++++++++||+|++++|-... ...++.
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~ 190 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLAD 190 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccC
Confidence 4699999999999999999999999999999753211 111 1246899999999999999996553 444442
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
++.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 191 --~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 191 --EKLIRSLKPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred --HHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh
Confidence 456778999999999999988888888888876
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-07 Score=104.40 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=91.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh----ccCCchhhhccc--cccccC---C-CCc-chHHHHHHhH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISN----AAGNSWIFKNYI--PNLLRG---D-AKL-HFLNAFIQNL 69 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~----~~~~s~~~~~~~--~~~~~~---~-~~~-f~l~l~~KDl 69 (988)
+.||+..+.+..+++|++.+++++|+|++++++++.. +++.|+.++++. +++.+| + |++ |.+.++.||+
T Consensus 204 ~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~ 283 (328)
T PRK14618 204 LGDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTV 283 (328)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHH
Confidence 4689999999999999999999999999999999876 588899999884 488888 5 677 9999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHH
Q 001973 70 GIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 70 ~la~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
+++.+++++.++++|+.+.+.+.+. ++.|...+++.+
T Consensus 284 ~~~~~la~~~~~~~Pl~~~~~~~~~-------~~~~~~~~~~~~ 320 (328)
T PRK14618 284 KALDAWAKAHGHDLPIVEAVARVAR-------GGWDPLAGLRSL 320 (328)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHh-------CCCCHHHHHHHH
Confidence 9999999999999999998888873 555666665544
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.7e-07 Score=98.85 Aligned_cols=112 Identities=11% Similarity=0.053 Sum_probs=84.7
Q ss_pred CCCCeEEEEccchHHHHHHHHHHh--CCCeEEEEeCChhHHHHHHhc----C--CcccCCHHHHhccCcEEEEEcCChHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLR--SNFTVIGYDVYRPTLTKFQNV----G--GLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~----G--~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
....+|+|||+|.||..++..+.. ...+|++|||++++.+++.+. | +..+++++++++++|+|+.|++.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~-- 200 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST-- 200 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence 345799999999999999986654 447899999999999887764 4 556789999999999998888865
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
+.++. .+.+++|+ +|++.+..+...+++...+.+ ++..|+|-
T Consensus 201 -~pvl~-----~~~l~~g~-~i~~ig~~~~~~~El~~~~~~--~a~~~vD~ 242 (314)
T PRK06141 201 -EPLVR-----GEWLKPGT-HLDLVGNFTPDMRECDDEAIR--RASVYVDT 242 (314)
T ss_pred -CCEec-----HHHcCCCC-EEEeeCCCCcccccCCHHHHh--cCcEEEcC
Confidence 23331 24577887 778887777777787766655 33456664
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.7e-06 Score=92.87 Aligned_cols=104 Identities=21% Similarity=0.271 Sum_probs=77.4
Q ss_pred CeEEEEccchHHHHHHHHHHhC--CCe-EEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS--NFT-VIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~--G~~-V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
|||||||+|.||..++..|.+. +++ +.+||+++++.+.+.+. |....+++++++.++|+|++|+|... ..++.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~-~~~~~-- 78 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNA-VEEVV-- 78 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHH-HHHHH--
Confidence 6999999999999999999886 355 66799999998887653 56677899998899999999998654 44443
Q ss_pred ccchhhhCCCCCEEEecCC---CCHHHHHHHHHHHHhc
Q 001973 223 DLGAVSALSSGASIILSST---VSPGFVSQLERRLQFE 257 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st---~~p~~~~~l~~~l~~~ 257 (988)
..+ +..|+-++.+|+ ..+...+++.+...+.
T Consensus 79 -~~a---l~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~ 112 (265)
T PRK13304 79 -PKS---LENGKDVIIMSVGALADKELFLKLYKLAKEN 112 (265)
T ss_pred -HHH---HHcCCCEEEEchHHhcCHHHHHHHHHHHHHc
Confidence 222 334555555665 3566677777776663
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-05 Score=92.69 Aligned_cols=199 Identities=8% Similarity=0.043 Sum_probs=128.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCcchHHHHHHhHHHHHHHHHhcC
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLHFLNAFIQNLGIALDMAKTLA 80 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl~la~~~a~~~g 80 (988)
+++|++.+++++.+.|+..++++.|+|.+.+++++... |.+..+.|-...| .-+-||.......+++.|
T Consensus 209 l~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~~~----~~~~~~~pG~vGG-------~ClpkD~~~L~~~a~~~g 277 (425)
T PRK15182 209 VIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK----WNFLPFRPGLVGG-------HCIGVDPYYLTHKSQGIG 277 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCC----CCcccCCCCcccc-------ccccccHHHHHHHHHhcC
Confidence 57999999999999999999999999999999995433 4344333333222 246699999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEcc------
Q 001973 81 FPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGL------ 154 (988)
Q Consensus 81 ~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~------ 154 (988)
+.+++..++++.=+...+ -+++.+.+..+.. .+ .-+..||+|+|+
T Consensus 278 ~~~~l~~~a~~iN~~~~~---------~v~~~~~~~l~~~-----~~---------------~~~~~~V~vlGlafK~~t 328 (425)
T PRK15182 278 YYPEIILAGRRLNDNMGN---------YVSEQLIKAMIKK-----GI---------------NVEGSSVLILGFTFKENC 328 (425)
T ss_pred CCcHHHHHHHHHHHHHHH---------HHHHHHHHHHHhc-----CC---------------CCCCCEEEEEEeEeCCCC
Confidence 999888887765442222 1333332211100 00 001248999998
Q ss_pred ----chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhC
Q 001973 155 ----GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSAL 230 (988)
Q Consensus 155 ----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l 230 (988)
..-+..++..|.+.|.+|.+||..-..-+.....+....+ ..+.+++|.|++++..+. .+..-. +.+....
T Consensus 329 ~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~--~~~~~~ad~vvi~t~h~~-f~~~~~--~~~~~~~ 403 (425)
T PRK15182 329 PDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVS--EVKSSHYDAIIVAVGHQQ-FKQMGS--EDIRGFG 403 (425)
T ss_pred CccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccch--hhhhcCCCEEEEccCCHH-hhcCCH--HHHHHhc
Confidence 4578899999999999999999752211111122321111 224678999999998876 332200 2233333
Q ss_pred CCCCEEEecCCCCH
Q 001973 231 SSGASIILSSTVSP 244 (988)
Q Consensus 231 ~~g~ivId~st~~p 244 (988)
+...+|+|+-+..+
T Consensus 404 ~~~~~iiD~r~~~~ 417 (425)
T PRK15182 404 KDKHVLYDLKYVLP 417 (425)
T ss_pred CCCCEEEECCCCCC
Confidence 33458999876654
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.9e-06 Score=86.84 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=76.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcccCCHHHHh-ccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLIANSPAEAA-KDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~-~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
.++|+|+|+|+||..+|+.|.+.|++|+++|+++++.+++.+. |....++ .+.. .+||+++.|.......++.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~---- 102 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDT---- 102 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHH----
Confidence 3689999999999999999999999999999999998888766 6665544 4444 4899999775543222222
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD 265 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld 265 (988)
++.+ +.++|+...+.. -+..+-.+.+.+ +|+.|++
T Consensus 103 ---~~~l-~~~~v~~~AN~~-~~~~~~~~~L~~--~Gi~~~P 137 (200)
T cd01075 103 ---IPQL-KAKAIAGAANNQ-LADPRHGQMLHE--RGILYAP 137 (200)
T ss_pred ---HHHc-CCCEEEECCcCc-cCCHhHHHHHHH--CCCEEeC
Confidence 2334 356777776653 222445566666 6788875
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.8e-06 Score=95.16 Aligned_cols=109 Identities=22% Similarity=0.264 Sum_probs=87.8
Q ss_pred CCeEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhH-HHHH-HhcC------------CcccCCHHHHhccCcEEEEEc
Q 001973 146 VTRVGFIGLGAMGFGMATHLL-RSNFTVIGYDVYRPT-LTKF-QNVG------------GLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~-~~~l-~~~G------------~~~~~s~~e~~~~aDvV~l~v 210 (988)
.++|||||+|.+|+.+|+.|. ..|.+|.+||++... .... ...| .....++++++++||+|++++
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~ 244 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHP 244 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeC
Confidence 469999999999999999986 789999999988642 1111 1111 123468999999999999999
Q ss_pred CChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 211 TNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
|-....+..+. ++.+..+++|.++|+++-+..-....+.+.+.+
T Consensus 245 Plt~~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 245 VLDKTTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred CCChhhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 99888888875 567888999999999998887777888888876
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.7e-06 Score=91.57 Aligned_cols=154 Identities=14% Similarity=0.046 Sum_probs=95.7
Q ss_pred cHHHHHHHHHHHHhhCcCCCCCchhHHHHHHh-hhcccccccccccccCchhhH-HHhhhc--CCCCCeEEEEccchHHH
Q 001973 84 PLLAVAHQQLILGLSHAHANDDNPPLVKVWEN-VLGVNITDAANLEAYKPEELA-KQITAK--SNSVTRVGFIGLGAMGF 159 (988)
Q Consensus 84 p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~-~~~~m~--~~~~~kIgiIG~G~mG~ 159 (988)
-+...+++.|+.|.+.|.-+.....+++..-+ --.++..........+..-.. +..... .-..++|+|||+|.||.
T Consensus 112 qIlgQvk~A~~~a~~~g~~~~~L~~lf~~a~~~~k~vr~et~i~~~~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~ 191 (311)
T cd05213 112 QILGQVKNAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETGISRGAVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGE 191 (311)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHH
Confidence 58888999999999988776666555543211 111111111111111111111 111111 12357999999999999
Q ss_pred HHHHHHHhCC-CeEEEEeCChhHHHHHHhc-CCccc--CCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhC-CCCC
Q 001973 160 GMATHLLRSN-FTVIGYDVYRPTLTKFQNV-GGLIA--NSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSAL-SSGA 234 (988)
Q Consensus 160 ~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~-G~~~~--~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l-~~g~ 234 (988)
.++..|...| ++|+++||++++...+.+. |.... ++..+.+.++|+||.|++.+.. ...+ ....... .++.
T Consensus 192 ~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~---~~~~~~~~~~~~ 267 (311)
T cd05213 192 LAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIV---ERAMKKRSGKPR 267 (311)
T ss_pred HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHH---HHHHhhCCCCCe
Confidence 9999999866 7899999999988777654 54322 3456778899999999998764 2222 1222222 2578
Q ss_pred EEEecCC
Q 001973 235 SIILSST 241 (988)
Q Consensus 235 ivId~st 241 (988)
++||++.
T Consensus 268 ~viDlav 274 (311)
T cd05213 268 LIVDLAV 274 (311)
T ss_pred EEEEeCC
Confidence 9999983
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.2e-06 Score=91.54 Aligned_cols=75 Identities=24% Similarity=0.196 Sum_probs=64.4
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEe-CChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYD-VYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
..++|+||| .|.||.+||.+|.++|++|++|+ |++ +++++++.||+|++|++.+..++.++
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~-- 219 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW-- 219 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe--
Confidence 357999999 99999999999999999999995 654 46788899999999999988665543
Q ss_pred ccchhhhCCCCCEEEecCCCC
Q 001973 223 DLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~ 243 (988)
+++|++|||++...
T Consensus 220 -------lk~GavVIDvGin~ 233 (296)
T PRK14188 220 -------IKPGATVIDVGINR 233 (296)
T ss_pred -------ecCCCEEEEcCCcc
Confidence 67899999998753
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.4e-06 Score=83.98 Aligned_cols=100 Identities=20% Similarity=0.211 Sum_probs=74.9
Q ss_pred EEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccC--------------CHHHHhccCcEEEEEcCChH
Q 001973 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIAN--------------SPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~--------------s~~e~~~~aDvV~l~vp~~~ 214 (988)
|.|+|+|.||..+|..|++.|++|+++.|++ +.+.+++.|..+.. ...+....+|+||+|++..+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 7899999999999999999999999999999 88888887754321 22345678999999999866
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHH
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRL 254 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l 254 (988)
+++++ +.+.+.+.+++.|+-+.++ .+..+.+.+.+
T Consensus 80 -~~~~l---~~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~ 114 (151)
T PF02558_consen 80 -LEQAL---QSLKPYLDPNTTIVSLQNG-MGNEEVLAEYF 114 (151)
T ss_dssp -HHHHH---HHHCTGEETTEEEEEESSS-SSHHHHHHCHS
T ss_pred -hHHHH---HHHhhccCCCcEEEEEeCC-CCcHHHHHHHc
Confidence 56666 5677788887666666554 33334555544
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.6e-06 Score=92.22 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=93.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcc-CCchhhhccccccccCCCCc-chHH-HHHHhHHHHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQF--GIHPWVLYDIISNAA-GNSWIFKNYIPNLLRGDAKL-HFLN-AFIQNLGIALDM 75 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~--Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~-f~l~-l~~KDl~la~~~ 75 (988)
++||.+.++.+++++|++.|++++ |+|++.+.++++.|+ ++||+++.+.+.+.++++.+ |... ...||.+.+.+.
T Consensus 172 ~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~ 251 (298)
T TIGR00872 172 MVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRVSDSGEGRWTVIA 251 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHHHhhccHHHHHHH
Confidence 589999999999999999999998 579999999999987 69999999988888888777 7644 689999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcc
Q 001973 76 AKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119 (988)
Q Consensus 76 a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~ 119 (988)
|.+.|+|+|..+.+...+..-.. .+.-...++..+|..+|.
T Consensus 252 a~~~g~p~P~~~~al~~~~~~~~---~~~~~~~~~~~~r~~fg~ 292 (298)
T TIGR00872 252 AIDLGVPAPVIATSLQSRFASRD---LDDFANKVLAALRKEFGG 292 (298)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC---CCCcHHHHHHHHHHhhCC
Confidence 99999999988885433332222 112245677878877764
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-05 Score=81.44 Aligned_cols=203 Identities=17% Similarity=0.136 Sum_probs=127.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhcC--------------CcccCCHHHHh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF-----------QNVG--------------GLIANSPAEAA 200 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G--------------~~~~~s~~e~~ 200 (988)
.-||+|+|.|.+|+.+|..|+..||+|..||+.++.+... .+.| +..++++.|++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 3589999999999999999999999999999998765432 2222 23588999999
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC-CCceEecCcccCCcccccCCC
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG-KDLKLVDAPVSGGVKRASMGE 279 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~-~g~~~ldapv~g~~~~a~~g~ 279 (988)
+++=.|--|+|..-.++.-+. +.+ ..+...++|+..||+.--.+.--+....... .-.|.+..|.+-.-..
T Consensus 83 k~Ai~iQEcvpE~L~lkk~ly--~ql-D~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvE----- 154 (313)
T KOG2305|consen 83 KGAIHIQECVPEDLNLKKQLY--KQL-DEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVE----- 154 (313)
T ss_pred hhhhhHHhhchHhhHHHHHHH--HHH-HHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchhe-----
Confidence 999999999998876655443 233 3333445555555443222222222211100 0123333332221111
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 280 LTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 280 l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
++-.--..++..++.+.++..+|.+.+.+..+++ ..+.|-. ..+.++|..++....+++..++..+++.|.+
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~-----Gf~lnri---q~Ailne~wrLvasGil~v~dvD~VmS~GLG 226 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQEPVTLKREIL-----GFALNRI---QYAILNETWRLVASGILNVNDVDAVMSAGLG 226 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCCCCcccccccc-----cceeccc---cHHHHHHHHHHHHccCcchhhHHHHHhcCCC
Confidence 1111124678899999999999976554322221 1222322 3356899999999999999999988888766
Q ss_pred Ccccc
Q 001973 360 SSWMF 364 (988)
Q Consensus 360 ~s~~~ 364 (988)
....+
T Consensus 227 ~RYAf 231 (313)
T KOG2305|consen 227 PRYAF 231 (313)
T ss_pred cchhc
Confidence 54443
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.4e-05 Score=88.74 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=76.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc--CCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA--NSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~--~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..|++|||.|.+|..++..|...|.+|+++||++++.+.....|.+.. +++.+.+.++|+||.++|.....
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~------- 224 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLT------- 224 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhh-------
Confidence 469999999999999999999999999999999988877777776643 35678889999999999864322
Q ss_pred cchhhhCCCCCEEEecCCCCHH
Q 001973 224 LGAVSALSSGASIILSSTVSPG 245 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~ 245 (988)
++..+.++++.+|||+++...+
T Consensus 225 ~~~l~~~~~g~vIIDla~~pgg 246 (296)
T PRK08306 225 KEVLSKMPPEALIIDLASKPGG 246 (296)
T ss_pred HHHHHcCCCCcEEEEEccCCCC
Confidence 2345667899999999886533
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.9e-05 Score=77.16 Aligned_cols=245 Identities=20% Similarity=0.241 Sum_probs=153.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC----eEEEEeCChhHH-HHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF----TVIGYDVYRPTL-TKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~----~V~v~dr~~~~~-~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
|+|||||.|+|..++++.+.+.|. +++.+-.+.... ..+...|...+.+..+.++.+|++|+++.. ..+..++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp-~~i~~vl- 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKP-QVIESVL- 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeecc-hhHHHHh-
Confidence 589999999999999999999883 577776633333 337777888777779999999999999986 4577787
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC---CHHHHHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG---TEESLKSTGSVL 298 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll 298 (988)
.++......+++++.+--+..-. .+...+.. ..+++-. +...|.....|.. ++.-| ..+..+.++.++
T Consensus 79 --s~~~~~~~~~~iivS~aaG~tl~--~l~~~l~~---~~rviRv-mpNtp~~v~eg~s-v~~~g~~~~~~D~~l~~~ll 149 (267)
T KOG3124|consen 79 --SEIKPKVSKGKIIVSVAAGKTLS--SLESKLSP---PTRVIRV-MPNTPSVVGEGAS-VYAIGCHATNEDLELVEELL 149 (267)
T ss_pred --hcCccccccceEEEEEeecccHH--HHHHhcCC---CCceEEe-cCCChhhhhcCcE-EEeeCCCcchhhHHHHHHHH
Confidence 45555567888998765443322 23333331 1222221 2233444555553 44433 356668899999
Q ss_pred HhcCCeEEE-------EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccc--ccc
Q 001973 299 SALSEKLYV-------IKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG-GSSWMFE--NRV 368 (988)
Q Consensus 299 ~~~g~~v~~-------~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~-~~s~~~~--~~~ 368 (988)
+.+|...-+ +.|=.|++-+ +...++.++++. +.+.|++.+..+++-.+.. +...+.. ..-
T Consensus 150 ~~vG~~~evpE~~iDavTgLsGSgPA-------y~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qH 219 (267)
T KOG3124|consen 150 SAVGLCEEVPEKCIDAVTGLSGSGPA-------YVFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQH 219 (267)
T ss_pred HhcCcceeCcHHhhhHHhhccCCcHH-------HHHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCC
Confidence 999864322 0122333333 333333333333 7899999998888776653 3222322 223
Q ss_pred ccccCCCC-CCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc
Q 001973 369 PHMLDNDY-TPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419 (988)
Q Consensus 369 ~~~~~~~~-~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~ 419 (988)
|..++.+. +|+.+ .-+.....++-|++.-++.++.+.-.++.+-
T Consensus 220 P~~Lkd~V~SPgG~-------TI~glh~LE~ggfRs~linaVeaa~~r~~el 264 (267)
T KOG3124|consen 220 PAQLKDDVCSPGGT-------TIYGLHALEKGGFRSGLINAVEAATKRAREL 264 (267)
T ss_pred cHHHhCCCCCCCcc-------hHHHHHHHHhCCchhHHHHHHHHHHHHHHHh
Confidence 55665553 45433 1244566678888888888888777766654
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.6e-06 Score=91.69 Aligned_cols=105 Identities=15% Similarity=-0.027 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhcC
Q 001973 2 VNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTLA 80 (988)
Q Consensus 2 ~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~g 80 (988)
+||+ +.+.++||+.|+++.|+|++.+.++++.+.+.+|++ ++|.++.++|.| |...++.||.+++.+++++.+
T Consensus 190 ~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~--~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~ 263 (308)
T PRK06129 190 LNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSF--MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERG 263 (308)
T ss_pred HHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccC--cCHHHHHhccccccHHHHHHHHHHHHHhhccccC
Confidence 4564 448999999999999999999999999999999977 799999888988 999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhCcCCCCCchhHHHH
Q 001973 81 FPLPLLAVAHQQLILGLSHAHANDDNPPLVKV 112 (988)
Q Consensus 81 ~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~ 112 (988)
.|.|++.....-....++.-++..++..+.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (308)
T PRK06129 264 QPVPWDGELVARVEAERRAALPLDQLAARQAW 295 (308)
T ss_pred CCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99998876666666667767787888776554
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.3e-06 Score=92.61 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=82.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----cCCchhhhccc--cccccCCCC-----c-chHHHHHHh
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNA----AGNSWIFKNYI--PNLLRGDAK-----L-HFLNAFIQN 68 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~----~~~s~~~~~~~--~~~~~~~~~-----~-f~l~l~~KD 68 (988)
+++|++.+....+++|++.++++.|+|++.+.+++..+ +..|+..+++. ..+..+... + +.+.++.||
T Consensus 205 ~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd 284 (325)
T PRK00094 205 LGDNARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRT 284 (325)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHH
Confidence 46899999999999999999999999999999987655 44455555554 344433311 1 346788999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHH
Q 001973 69 LGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 69 l~la~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
++++.++++++|+++|+.+.+.+.|. .+.+...+++.+
T Consensus 285 ~~~~~~~a~~~~~~~P~~~~~~~~~~-------~~~~~~~~~~~~ 322 (325)
T PRK00094 285 AKAVYELAKKLGVEMPITEAVYAVLY-------EGKDPREAVEDL 322 (325)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHc-------CCCCHHHHHHHH
Confidence 99999999999999999999999984 556666665544
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.8e-06 Score=92.07 Aligned_cols=101 Identities=12% Similarity=0.150 Sum_probs=86.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHH--------------
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAF-------------- 65 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~-------------- 65 (988)
+.+|++.+.++.+++|++.++++.|++++.++++ .|.+++++ ..+.+.+++|++ |.+.++
T Consensus 181 l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~--~g~gd~~~---t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~ 255 (308)
T PRK14619 181 LGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL--SGLGDLLA---TCTSPLSRNYQVGYGLAQGKSLEQILAELEGTA 255 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhCCCccccccc--cchhhhhe---eecCCCCccHHHHHHHHCCCCHHHHHHhcCCEe
Confidence 4689999999999999999999999999999994 47788775 335788899988 888888
Q ss_pred --HHhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHH
Q 001973 66 --IQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 66 --~KDl~la~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
.||++++.+++++.|+++|+...+.++|. ++.+...+++.+
T Consensus 256 eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~-------~~~~~~~~~~~l 298 (308)
T PRK14619 256 EGVNTANVLVQLAQQQNIAVPITEQVYRLLQ-------GEITPQQALEEL 298 (308)
T ss_pred ecHHHHHHHHHHHHHcCCCCCHHHHHHHHHc-------CCCCHHHHHHHH
Confidence 99999999999999999999999999994 556666665544
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=87.64 Aligned_cols=112 Identities=17% Similarity=0.138 Sum_probs=79.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc----CCcccCCHHH-HhccCcEEEEEcCChH--HHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV----GGLIANSPAE-AAKDVGVLVIMVTNEA--QAESV 219 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----G~~~~~s~~e-~~~~aDvV~l~vp~~~--~~~~v 219 (988)
+++.|+|+|.+|.+++..|++.|++|+++||++++.+.+.+. +.....+..+ ...++|+||.|+|... ..+.+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~ 197 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEP 197 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCC
Confidence 589999999999999999999999999999999988776653 3222223333 2357999999999752 11111
Q ss_pred HccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 220 LYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
.. ....++++.+++|+++.++.+ .+.+...+ +|.+++++
T Consensus 198 ~~----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~--~G~~~vdG 236 (270)
T TIGR00507 198 PV----PAEKLKEGMVVYDMVYNPGET--PFLAEAKS--LGTKTIDG 236 (270)
T ss_pred CC----CHHHcCCCCEEEEeccCCCCC--HHHHHHHH--CCCeeeCC
Confidence 10 124577899999999988776 46666655 46666654
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.3e-05 Score=71.15 Aligned_cols=104 Identities=25% Similarity=0.294 Sum_probs=80.2
Q ss_pred CeEEEEccchHHHHHHHHHHhC--CCeE-EEEeCChhHHHHHH-hcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS--NFTV-IGYDVYRPTLTKFQ-NVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~-~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl 220 (988)
+||||||+|.+|......+.+. ++++ .++|+++++.+.+. ..|....+|.+++++ +.|+|++++|+....+.+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 3899999999999999999887 3564 57899999988865 458888999999988 7899999999987655543
Q ss_pred ccccchhhhCCCC-CEEEec-CCCCHHHHHHHHHHHHhc
Q 001973 221 YGDLGAVSALSSG-ASIILS-STVSPGFVSQLERRLQFE 257 (988)
Q Consensus 221 ~~~~~i~~~l~~g-~ivId~-st~~p~~~~~l~~~l~~~ 257 (988)
.. +..| .++++. -+..+...+++.+...+.
T Consensus 81 ----~~---l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 81 ----KA---LEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp ----HH---HHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred ----HH---HHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 22 2233 455554 245788888998887764
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.2e-05 Score=85.23 Aligned_cols=76 Identities=24% Similarity=0.215 Sum_probs=64.2
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|+|||. |.||.+||..|.++|++|++|... +.++++.+++||+||++++.+..++...
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~--- 219 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEF--- 219 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHH---
Confidence 3479999999 999999999999999999999421 3378889999999999999988665443
Q ss_pred cchhhhCCCCCEEEecCCCC
Q 001973 224 LGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~ 243 (988)
+++|.++||++...
T Consensus 220 ------ik~GavVIDvgin~ 233 (284)
T PRK14179 220 ------VKEGAVVIDVGMNR 233 (284)
T ss_pred ------ccCCcEEEEeccee
Confidence 67999999998653
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.5e-05 Score=88.44 Aligned_cols=131 Identities=19% Similarity=0.169 Sum_probs=83.4
Q ss_pred cHHHHHHHHHHHHhhCcCCCCCchhHHHHH-H--hhh--cccccccccccccCchhhHHHhhhc-CCCCCeEEEEccchH
Q 001973 84 PLLAVAHQQLILGLSHAHANDDNPPLVKVW-E--NVL--GVNITDAANLEAYKPEELAKQITAK-SNSVTRVGFIGLGAM 157 (988)
Q Consensus 84 p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~-~--~~~--g~~~~~~~~~~~~~~~~~~~~~~m~-~~~~~kIgiIG~G~m 157 (988)
-+...+++.|+.|.+.|.-+.....+++.- . ++. ...+.....--.+..-+..+..-.. .-...+|+|||+|.|
T Consensus 198 QIlgQVK~A~~~A~~~g~~g~~L~~LF~~Ai~~~KrVRteT~I~~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~m 277 (519)
T PLN00203 198 QILAQVKQVVKVGQGVDGFGRNLSGLFKHAITAGKRVRTETNIASGAVSVSSAAVELALMKLPESSHASARVLVIGAGKM 277 (519)
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHH
Confidence 478888999999998876655555554431 1 111 0111111111011111122111000 023579999999999
Q ss_pred HHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--CCc----ccCCHHHHhccCcEEEEEcCChH
Q 001973 158 GFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--GGL----IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 158 G~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--G~~----~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
|..++.+|...|. +|+++||++++.+.+.+. +.. ..++..+++.++|+||+|++.+.
T Consensus 278 G~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 278 GKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCC
Confidence 9999999999996 799999999999888764 321 23567788899999999987654
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.9e-05 Score=83.90 Aligned_cols=95 Identities=24% Similarity=0.245 Sum_probs=73.4
Q ss_pred CCCCeEEEEccchHHHHHHHHHHh--CCCeEEEEeCChhHHHHHHh----cC--CcccCCHHHHhccCcEEEEEcCChHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLR--SNFTVIGYDVYRPTLTKFQN----VG--GLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~----~G--~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
+...++||||+|.||...+..|.. ...+|.+|||++++.+.+.+ .| +..++++++++++||+|++|+|+..
T Consensus 126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~- 204 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK- 204 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC-
Confidence 345789999999999997777754 44689999999999887654 25 3568899999999999999998743
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~ 246 (988)
.++. ...+++|..|...++..|..
T Consensus 205 --P~~~-----~~~l~~g~~v~~vGs~~p~~ 228 (325)
T TIGR02371 205 --PVVK-----ADWVSEGTHINAIGADAPGK 228 (325)
T ss_pred --cEec-----HHHcCCCCEEEecCCCCccc
Confidence 2221 23568898888888776644
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.9e-05 Score=74.18 Aligned_cols=93 Identities=19% Similarity=0.154 Sum_probs=68.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
-+++.|+|.|..|..+|+.|...|-+|++++++|-+.-+....|..+. +.++++..+|++|+++.....+. .+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~------~e 95 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVIT------GE 95 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-------HH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccC------HH
Confidence 468999999999999999999999999999999999888888898765 68899999999999987644222 13
Q ss_pred hhhhCCCCCEEEecCCCCHH
Q 001973 226 AVSALSSGASIILSSTVSPG 245 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~ 245 (988)
..+.+++|.++.+.+...-+
T Consensus 96 ~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 96 HFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp HHHHS-TTEEEEESSSSTTS
T ss_pred HHHHhcCCeEEeccCcCcee
Confidence 34568899999988876543
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.9e-05 Score=75.82 Aligned_cols=90 Identities=12% Similarity=0.049 Sum_probs=65.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhHHHHHHhcC------CcccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFT-VIGYDVYRPTLTKFQNVG------GLIANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~G------~~~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
..++.|||+|.||.+++..|.+.|.+ |+++||+.++++++.+.- ....++..+...++|+||.|+|.+..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~--- 88 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP--- 88 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST---
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc---
Confidence 46999999999999999999999976 999999999999887642 12345666778899999999998753
Q ss_pred HHccccchhhhCCC-CCEEEecC
Q 001973 219 VLYGDLGAVSALSS-GASIILSS 240 (988)
Q Consensus 219 vl~~~~~i~~~l~~-g~ivId~s 240 (988)
.+. +.......+ -++++|++
T Consensus 89 ~i~--~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 89 IIT--EEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp SST--HHHHTTTCHHCSEEEES-
T ss_pred ccC--HHHHHHHHhhhhceeccc
Confidence 110 111222221 14999997
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=7.3e-05 Score=86.40 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=74.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..++|+|||.|.+|..+|..|...|.+|+++++++.+.......|... .+..++++.+|+|++++.+.. ++. .
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~----iI~--~ 325 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKD----IIT--L 325 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCccc----ccC--H
Confidence 346999999999999999999999999999999988775555567654 468899999999999976533 331 2
Q ss_pred chhhhCCCCCEEEecCCCC
Q 001973 225 GAVSALSSGASIILSSTVS 243 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~ 243 (988)
.....+++|.++++.+...
T Consensus 326 e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 326 EHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred HHHhccCCCcEEEEcCCCc
Confidence 4456789999999998874
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00034 Score=81.54 Aligned_cols=175 Identities=14% Similarity=0.084 Sum_probs=106.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCcchHHHHHHhHHHHHHHHHhcC
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLHFLNAFIQNLGIALDMAKTLA 80 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl~la~~~a~~~g 80 (988)
+++|++.+++++.+.|+..++++.|+|++.+.++++.-+.- ....|-.= |.=.-+-||..+.. ...+
T Consensus 213 l~~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~~~ri----~~l~pG~G------~GG~ClpkD~~~L~---~~~~ 279 (415)
T PRK11064 213 LTENSFRDVNIAFANELSLICADQGINVWELIRLANRHPRV----NILQPGPG------VGGHCIAVDPWFIV---AQNP 279 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCCCc----ccCCCCCC------CCCccccccHHHHH---HhcC
Confidence 57999999999999999999999999999999998654321 10111110 22334567776543 3445
Q ss_pred CCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccc-----
Q 001973 81 FPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLG----- 155 (988)
Q Consensus 81 ~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G----- 155 (988)
...++.+++.+.=+...+ -+++.+.+.....+. +. ....+..+|+|+|+-
T Consensus 280 ~~~~l~~~a~~~N~~~~~---------~v~~~~~~~l~~~l~---------------~~-~~~~~~~~v~vlGlafK~~t 334 (415)
T PRK11064 280 QQARLIRTAREVNDGKPH---------WVIDQVKAAVADCLA---------------AT-DKRASEVKIACFGLAFKPNI 334 (415)
T ss_pred CccHHHHHHHHHHHHhHH---------HHHHHHHHHHhhhhh---------------hh-ccCcCCCEEEEEeeEECCCC
Confidence 455555554433221111 122222211100000 00 000122589999984
Q ss_pred -----hHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChH
Q 001973 156 -----AMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 156 -----~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
.-...++..|.+.| .+|.+||..-........ +.....++.++++++|.|+++++.+.
T Consensus 335 ~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~-~~~~~~~~~~~~~~ad~vvi~t~~~~ 398 (415)
T PRK11064 335 DDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLD-GLVTLVSLDEALATADVLVMLVDHSQ 398 (415)
T ss_pred cchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhcc-CceeeCCHHHHHhCCCEEEECCCCHH
Confidence 46679999999996 999999976433221111 12234788899999999999999865
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.2e-05 Score=84.96 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=72.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEE------EeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIG------YDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v------~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
++|+|||+|..|.+.|.+|...|++|++ .|.+....+.+.+.|..+ .++.|+++.||+|++.+|+.. -..+.
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt~-q~~v~ 114 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQ-HSDVV 114 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChHH-HHHHH
Confidence 6999999999999999999999999994 343345566666778865 679999999999999999984 44454
Q ss_pred ccccchhhhCCCCCEEEec
Q 001973 221 YGDLGAVSALSSGASIILS 239 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~ 239 (988)
+.+.+.+++|.++.-.
T Consensus 115 ---~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 115 ---RAVQPLMKQGAALGYS 130 (487)
T ss_pred ---HHHHhhCCCCCEEEec
Confidence 6889999999887643
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00062 Score=78.41 Aligned_cols=167 Identities=10% Similarity=0.001 Sum_probs=115.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
+++|++.+++++.+.|...++++.|+|.+.+.++++.-+.-++ ..++. .+ |.=.-+-||.......+ .
T Consensus 198 l~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~~d~ri~~-------~~l~p--G~G~GG~ClpkD~~~L~~~~--~ 266 (388)
T PRK15057 198 LFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGN-------HYNNP--SFGYGGYCLPKDTKQLLANY--Q 266 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCCCCCC-------ccCCC--CCCCCCcChhhhHHHHHHhc--c
Confidence 5799999999999999999999999999999999976542221 11100 11 33344668887765444 5
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccc----
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLG---- 155 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G---- 155 (988)
++++++.+.+.+.=+...+ .+++.+.+. ...+|+|.|+.
T Consensus 267 ~~~~~l~~~~~~~N~~~~~---------~~~~~~~~~----------------------------~~~~i~vlGlafK~~ 309 (388)
T PRK15057 267 SVPNNLISAIVDANRTRKD---------FIADAILSR----------------------------KPQVVGIYRLIMKSG 309 (388)
T ss_pred CCCcHHHHHHHHHHHHhHH---------HHHHHHHHh----------------------------cCCEEEEEcceeCCC
Confidence 5666766666554332221 133333221 11378888884
Q ss_pred ------hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 156 ------AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 156 ------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
.-...++..|.+.|.+|.+||..-.... ..+...++++.++++++|.|++..-.+. ++.+
T Consensus 310 t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 375 (388)
T PRK15057 310 SDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRMAEE-LKDV 375 (388)
T ss_pred CCccccChHHHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCCcHH-HHhh
Confidence 4567899999999999999997633322 3378889999999999999999887754 4443
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0002 Score=82.61 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=73.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|+|+|+|.+|..+|..+...|.+|+++++++.+.......|.... +..++++.+|+||++..+...+. ..
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~------~e 326 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIM------VD 326 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchH------HH
Confidence 469999999999999999999999999999999987666666677644 67889999999999777654321 23
Q ss_pred hhhhCCCCCEEEecCCCC
Q 001973 226 AVSALSSGASIILSSTVS 243 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~ 243 (988)
....+++|.++++.+...
T Consensus 327 ~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 327 HMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred HHhcCCCCCEEEEcCCCC
Confidence 456788999999998743
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00019 Score=79.97 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=51.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHH----HHhc--------CCcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTK----FQNV--------GGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~----l~~~--------G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+|.||..+|..|+.+|+ +|.++|++.+..+. +.+. .++.+++.++ +++||+||++++.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 699999999999999999999887 89999997665431 1111 1234567776 78999999999854
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00027 Score=72.41 Aligned_cols=102 Identities=20% Similarity=0.291 Sum_probs=72.3
Q ss_pred CeEEEEccchHHHHHHHHHHhC--CCe-EEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS--NFT-VIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~--G~~-V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
|+||+||+|.+|..+...+... .++ +.+|||+.++...+.+. +...++++.|.+++.|+++-|-.. +++++..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~e~~-- 77 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVREYV-- 77 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHHHHh--
Confidence 4899999999999999877653 354 89999999999877654 556678899999999999999865 4455543
Q ss_pred ccchhhhCCCCCEEEecCCC---CHHHHHHHHHHHH
Q 001973 223 DLGAVSALSSGASIILSSTV---SPGFVSQLERRLQ 255 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~---~p~~~~~l~~~l~ 255 (988)
.+.|..|.-++.+|.+ .|+...++.+...
T Consensus 78 ----~~~L~~g~d~iV~SVGALad~~l~erl~~lak 109 (255)
T COG1712 78 ----PKILKAGIDVIVMSVGALADEGLRERLRELAK 109 (255)
T ss_pred ----HHHHhcCCCEEEEechhccChHHHHHHHHHHh
Confidence 3445555555555543 3444444444333
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0001 Score=70.53 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=61.9
Q ss_pred eEEEEc-cchHHHHHHHHHHhC-CCeEEEE-eCChhHHHHHHhcCCc--------cc-CCHHHHhccCcEEEEEcCChHH
Q 001973 148 RVGFIG-LGAMGFGMATHLLRS-NFTVIGY-DVYRPTLTKFQNVGGL--------IA-NSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 148 kIgiIG-~G~mG~~lA~~L~~~-G~~V~v~-dr~~~~~~~l~~~G~~--------~~-~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
||+||| .|.+|..++..|.+. ++++... ++++++.+.+...+.. .. .+.+ ..++|+||+|+|+...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DvV~~~~~~~~~ 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE--ELAVDIVFLALPHGVS 78 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChh--hcCCCEEEEcCCcHHH
Confidence 699999 599999999999985 7886665 6665444444333211 11 1222 2489999999999876
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
.+.+. .+...+.+|+++||+|+..
T Consensus 79 ~~~~~----~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 79 KEIAP----LLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred HHHHH----HHHhhhcCCCEEEECCccc
Confidence 55443 3345568999999999863
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00029 Score=80.72 Aligned_cols=93 Identities=18% Similarity=0.093 Sum_probs=75.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
...+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......|..+. +.+++++.+|++|.++.+...+..
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~------ 266 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRG------ 266 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHH------
Confidence 3569999999999999999999999999999999988777677777544 567889999999999887554432
Q ss_pred chhhhCCCCCEEEecCCCCH
Q 001973 225 GAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p 244 (988)
.....+++|.++++.+....
T Consensus 267 ~~~~~mK~GailiN~G~~~~ 286 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDV 286 (406)
T ss_pred HHHhcCCCCcEEEEECCCCc
Confidence 23456889999999887654
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00024 Score=81.83 Aligned_cols=93 Identities=20% Similarity=0.119 Sum_probs=75.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
...+|+|+|.|.+|..+|..|...|.+|+++|+++.+.......|... .+..++++.+|+||.++.+...+..
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~------ 283 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITA------ 283 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHH------
Confidence 356999999999999999999999999999999998877666667664 4678889999999999876553332
Q ss_pred chhhhCCCCCEEEecCCCCH
Q 001973 225 GAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p 244 (988)
.....+++|.++++.+....
T Consensus 284 ~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 284 EHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred HHHhcCCCCCEEEEcCCCCC
Confidence 33566889999999887654
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0003 Score=67.55 Aligned_cols=102 Identities=21% Similarity=0.272 Sum_probs=65.9
Q ss_pred CeEEEEcc-chHHHHHHHHHHh-CCCe-EEEEeCChh-HH----HHH---HhcCCcccCCHHHHhccCcEEEEEcCChHH
Q 001973 147 TRVGFIGL-GAMGFGMATHLLR-SNFT-VIGYDVYRP-TL----TKF---QNVGGLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~-~G~~-V~v~dr~~~-~~----~~l---~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
|||+|+|+ |.||+.+++.+.+ .+++ +-++|++++ .. .++ ...|..+.++++++.+.+|++|-+. .+..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 48999999 9999999999998 7788 555688872 11 111 1346778899999999999999888 5555
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ 255 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~ 255 (988)
+...+ +...+ .|..+|..+|.......+..+.+.
T Consensus 80 ~~~~~---~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 80 VYDNL---EYALK---HGVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp HHHHH---HHHHH---HT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred hHHHH---HHHHh---CCCCEEEECCCCCHHHHHHHHHHh
Confidence 55554 23333 367777777776544433333343
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00057 Score=75.71 Aligned_cols=99 Identities=13% Similarity=0.196 Sum_probs=68.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhC-CCeEE-EEeCCh-hHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS-NFTVI-GYDVYR-PTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~-G~~V~-v~dr~~-~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
++||+|||+|+||..++..+.++ ++++. +||+++ ++.. ...+.....+..+...+.|+|++|+|+....+.+.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~-- 78 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA-- 78 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH--
Confidence 47999999999999999999876 67866 479985 4433 12244445677777789999999999876554443
Q ss_pred ccchhhhCCCCCEEEecCCC---CHHHHHHHHHH
Q 001973 223 DLGAVSALSSGASIILSSTV---SPGFVSQLERR 253 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~---~p~~~~~l~~~ 253 (988)
+.+..|.-+|++... .|...+.+.+.
T Consensus 79 -----~~L~aG~NVV~s~~~h~~~p~~~~~ld~A 107 (324)
T TIGR01921 79 -----PYFAQFANTVDSFDNHRDIPRHRQVMDAA 107 (324)
T ss_pred -----HHHHcCCCEEECCCcccCCHHHHHHHHHH
Confidence 445677777776532 23444444443
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0002 Score=76.58 Aligned_cols=89 Identities=27% Similarity=0.280 Sum_probs=73.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH-HHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT-LTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|+|||.|+-|.+-|.||..+|.+|++--|.-.. .+...+.|.. +.+.+|+++.+|+|++-+|+..+ .+|+. +
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q-~~vy~--~ 93 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQ-KEVYE--K 93 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhH-HHHHH--H
Confidence 359999999999999999999999998877665544 6777777877 46899999999999999999764 44552 5
Q ss_pred chhhhCCCCCEEEe
Q 001973 225 GAVSALSSGASIIL 238 (988)
Q Consensus 225 ~i~~~l~~g~ivId 238 (988)
.+.+.|++|..+.-
T Consensus 94 ~I~p~Lk~G~aL~F 107 (338)
T COG0059 94 EIAPNLKEGAALGF 107 (338)
T ss_pred HhhhhhcCCceEEe
Confidence 78899999886553
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00016 Score=81.13 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=50.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHH----hc----C--Cc--ccCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQ----NV----G--GL--IANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~----G--~~--~~~s~~e~~~~aDvV~l~vp~ 212 (988)
||||+|||+|.||..+|..++..|+ +|.++|+++++.+... +. + .+ .+++. +.+++||+||+++..
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~ 80 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV 80 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence 3699999999999999999999876 9999999887654322 11 1 12 23455 557899999999743
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00035 Score=79.14 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=80.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhcC---Cc-------ccCCHHHHhccCcEEEEEcCChH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNVG---GL-------IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~G---~~-------~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
||||-|||+|.+|+.+|..|+++| ++|++-||++++.+++.... +. -.+.+.+++++.|+||.|.|...
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~ 80 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV 80 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence 369999999999999999999999 99999999999999987653 21 12345678889999999999877
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
... ++ ...+..|.-++|.|-..+.. ..+.+...+
T Consensus 81 ~~~-i~------ka~i~~gv~yvDts~~~~~~-~~~~~~a~~ 114 (389)
T COG1748 81 DLT-IL------KACIKTGVDYVDTSYYEEPP-WKLDEEAKK 114 (389)
T ss_pred hHH-HH------HHHHHhCCCEEEcccCCchh-hhhhHHHHH
Confidence 543 22 12345688899999887775 666666555
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00029 Score=82.41 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=57.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-CCcc--cCCHHHHhccCcEEEEEcCChH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-GGLI--ANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G~~~--~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
..++|+|||+|.||..++..|...|. +|+++||++++...+.+. |... ..+..+.+.++|+||.|++.+.
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 34699999999999999999999997 799999999998776654 4322 2455677889999999998765
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0029 Score=74.51 Aligned_cols=201 Identities=9% Similarity=0.022 Sum_probs=130.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCcchHHHHHHhHHHHHHHHHhcC
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLHFLNAFIQNLGIALDMAKTLA 80 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl~la~~~a~~~g 80 (988)
++.|...++.++-+-|--.++++.|+|...+.++++.-+--++.+. .|-+- |.=.-+-||.......+++.|
T Consensus 217 ~~eN~~ra~~Iaf~NEla~lce~~giD~~eV~~~~~~d~rig~~~l--~PG~G------~GG~ClpkD~~~L~~~a~~~g 288 (473)
T PLN02353 217 LAANAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDSRIGPKFL--NASVG------FGGSCFQKDILNLVYICECNG 288 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCCcCCCCCC--CCCCC------CCCcchhhhHHHHHHHHHHcC
Confidence 3679999999999999999999999999999988865532111001 01110 223346699999999999999
Q ss_pred CC--CcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEcc----
Q 001973 81 FP--LPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGL---- 154 (988)
Q Consensus 81 ~~--~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~---- 154 (988)
++ +++...+.+ .+..+ ...+++.+.+.... .....||+|+|+
T Consensus 289 ~~~~~~l~~~~~~-----iN~~~----~~~vv~~~~~~l~~-----------------------~~~~~~VavlGlafK~ 336 (473)
T PLN02353 289 LPEVAEYWKQVIK-----MNDYQ----KSRFVNRVVSSMFN-----------------------TVSGKKIAVLGFAFKK 336 (473)
T ss_pred CchHHHHHHHHHH-----HHHhh----HHHHHHHHHHHhhc-----------------------ccCCCEEEEEeeeecC
Confidence 88 555555542 22111 11234333332110 011258999998
Q ss_pred ------chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc----------------------CCcccCCHHHHhccCcEE
Q 001973 155 ------GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV----------------------GGLIANSPAEAAKDVGVL 206 (988)
Q Consensus 155 ------G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----------------------G~~~~~s~~e~~~~aDvV 206 (988)
..-...++..|.+.|.+|.+||.--...+.-... ++..++++.++++++|+|
T Consensus 337 ~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~v 416 (473)
T PLN02353 337 DTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEATKGAHGI 416 (473)
T ss_pred CCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeCCHHHHhcCCCEE
Confidence 4577899999999999999999763322110011 235577878899999999
Q ss_pred EEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCH
Q 001973 207 VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 207 ~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p 244 (988)
++++..+. .+..- .+.+.+.+.+..+|+|+.....
T Consensus 417 vi~t~~~e-f~~l~--~~~~~~~m~~~~~viD~rn~l~ 451 (473)
T PLN02353 417 CILTEWDE-FKTLD--YQKIYDNMQKPAFVFDGRNVLD 451 (473)
T ss_pred EECCCChH-hcccC--HHHHHHhccCCCEEEECCCCCC
Confidence 99999866 33221 0233444555568999887753
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00051 Score=73.47 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=80.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCC---Ce-EEEEeCChhHHHHHHhcCCcccCCHHHH-hccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN---FT-VIGYDVYRPTLTKFQNVGGLIANSPAEA-AKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G---~~-V~v~dr~~~~~~~l~~~G~~~~~s~~e~-~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+||||||+|.||..++..|.+.+ ++ +.+|+|++++.+.+... ...++++.++ ....|+|+-|-+.. ++++..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~-av~e~~- 79 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQ-AIAEHA- 79 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHH-HHHHHH-
Confidence 69999999999999999997643 44 56689999888888665 7788999996 68899999998754 355543
Q ss_pred cccchhhhCCCCCEEEecCCC---CHHHHHHHHHHHHhcCCCceEecCcccC
Q 001973 222 GDLGAVSALSSGASIILSSTV---SPGFVSQLERRLQFEGKDLKLVDAPVSG 270 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~---~p~~~~~l~~~l~~~~~g~~~ldapv~g 270 (988)
.+.|..|.-++.+|.+ .+...+++.+...+.+..++...+.+.|
T Consensus 80 -----~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigG 126 (267)
T PRK13301 80 -----EGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAG 126 (267)
T ss_pred -----HHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHh
Confidence 2345556666666643 4455666666555533344444444444
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00033 Score=81.09 Aligned_cols=130 Identities=13% Similarity=0.079 Sum_probs=84.8
Q ss_pred cHHHHHHHHHHHHhhCcCCCCCchhHHHHH-H--h--hhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHH
Q 001973 84 PLLAVAHQQLILGLSHAHANDDNPPLVKVW-E--N--VLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMG 158 (988)
Q Consensus 84 p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~-~--~--~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG 158 (988)
-+...+++.|+.|.+.|.-+.....+++.- . + ++...+......-.+..-...++. ...-..++|.|||+|.||
T Consensus 115 QIlgQVK~A~~~A~~~g~~g~~L~~lf~~A~~~aKrVrteT~I~~~~vSv~~~Av~la~~~-~~~l~~kkvlviGaG~~a 193 (414)
T PRK13940 115 QILGQVKDSYTLSKKNHAIGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITLAKRQ-LDNISSKNVLIIGAGQTG 193 (414)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHH-hcCccCCEEEEEcCcHHH
Confidence 478889999999999887765555554431 1 1 111111111111111111122211 112234689999999999
Q ss_pred HHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-C-Cc--ccCCHHHHhccCcEEEEEcCChH
Q 001973 159 FGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-G-GL--IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 159 ~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G-~~--~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
..++.+|+..|. ++++++|+.++.+.+.+. + .. ..++..+.+.++|+||.|++.+.
T Consensus 194 ~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 194 ELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred HHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence 999999999995 799999999999888764 2 22 23556677889999999998765
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00044 Score=78.71 Aligned_cols=128 Identities=17% Similarity=0.116 Sum_probs=86.6
Q ss_pred cHHHHHHHHHHHHhhCcCCCCCchhHHHH-------HHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccch
Q 001973 84 PLLAVAHQQLILGLSHAHANDDNPPLVKV-------WENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGA 156 (988)
Q Consensus 84 p~~~~~~~~~~~a~~~G~g~~D~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~ 156 (988)
-+...+++.|..|.+.|.-+.....+++. ++..++..-...+.. +..-+.++..-. .-...++.|||+|.
T Consensus 112 QILGQVK~Ay~~a~~~g~~g~~L~~lFqkAi~~gKrvRseT~I~~~~VSi~--saAv~lA~~~~~-~L~~~~vlvIGAGe 188 (414)
T COG0373 112 QILGQVKDAYAKAQENGTLGKVLNRLFQKAISVGKRVRSETGIGKGAVSIS--SAAVELAKRIFG-SLKDKKVLVIGAGE 188 (414)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhcccCCCCCccchH--HHHHHHHHHHhc-ccccCeEEEEcccH
Confidence 47888999999999988766666555532 122222211111111 112223322211 11346899999999
Q ss_pred HHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhc-CCc--ccCCHHHHhccCcEEEEEcCChH
Q 001973 157 MGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNV-GGL--IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 157 mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~-G~~--~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
||.-.|++|.++| .+|++.||+.+++.+|.+. |+. ..+.+.+.+.++|+||+++..+.
T Consensus 189 m~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 189 MGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCc
Confidence 9999999999999 6899999999999988764 533 34567778899999999987654
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00034 Score=78.01 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=73.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhc----CCcc-cCCHHHHhccCcEEEEEcCChHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR-SN-FTVIGYDVYRPTLTKFQNV----GGLI-ANSPAEAAKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~----G~~~-~~s~~e~~~~aDvV~l~vp~~~~~~ 217 (988)
...+|+|||+|.+|...+..+.. .+ .+|.+|||++++.+.+.+. +..+ +++.+++++++|+|++|+|.+.
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--- 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--- 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---
Confidence 45699999999999999999975 45 4799999999998877653 3333 5788999999999999999865
Q ss_pred HHHccccchhhhCCCCCEEEecCCCCHHHH
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTVSPGFV 247 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~~p~~~ 247 (988)
.++ . ..+++|+.|...++..|+.-
T Consensus 201 Pl~---~---~~~~~g~hi~~iGs~~p~~~ 224 (304)
T PRK07340 201 PVY---P---EAARAGRLVVAVGAFTPDMA 224 (304)
T ss_pred cee---C---ccCCCCCEEEecCCCCCCcc
Confidence 333 1 23678998888888777553
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00049 Score=79.18 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=75.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
..+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....|+... +..+++..+|+||.|+.++..+.. .
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~------~ 274 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITG------E 274 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHH------H
Confidence 469999999999999999999999999999999999988888887543 457888899999999987664443 2
Q ss_pred hhhhCCCCCEEEecCCC
Q 001973 226 AVSALSSGASIILSSTV 242 (988)
Q Consensus 226 i~~~l~~g~ivId~st~ 242 (988)
....+++|.++++.+..
T Consensus 275 ~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 275 HFEQMKDGAIVCNIGHF 291 (413)
T ss_pred HHhcCCCCcEEEEeCCC
Confidence 34567889999988754
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0017 Score=66.62 Aligned_cols=189 Identities=13% Similarity=0.047 Sum_probs=123.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEE-eCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGY-DVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~-dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+.++|||.|..|.+...+..+.++..... .|+++++..|.+.-.-..-+.+...+-.+++|.-+|+.. +..+.
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~~-~s~va---- 84 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDAL-YSGVA---- 84 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHHH-HHHHH----
Confidence 468999999999999666655555554433 578888777665422222233333445678888888762 33332
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-c---ccCCccccc--CCCeEEEEeCCHHHHHHHHHHH
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-P---VSGGVKRAS--MGELTIMAAGTEESLKSTGSVL 298 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-p---v~g~~~~a~--~g~l~~~~gg~~~~~~~~~~ll 298 (988)
......+|+++++||...-.. +-+.+.. .|...... | .+|.+.... .++...+..+|+--+.-++++.
T Consensus 85 -a~~~~rpg~iv~HcSga~~~~---il~~~gr--~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la 158 (289)
T COG5495 85 -ATSLNRPGTIVAHCSGANGSG---ILAPLGR--QGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLA 158 (289)
T ss_pred -HhcccCCCeEEEEccCCCchh---hhhhhhh--cCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHH
Confidence 123356899999999764332 3333333 22222211 2 233444433 4555555567776677788999
Q ss_pred HhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 001973 299 SALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNT 347 (988)
Q Consensus 299 ~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~ 347 (988)
..+|.+.+.+ ..+.--......|...+.....+.|+.++.+..|+|.
T Consensus 159 ~emgg~~f~V--~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq 205 (289)
T COG5495 159 LEMGGEPFCV--REEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQ 205 (289)
T ss_pred HHhCCCceee--chhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 9999888876 7777777888888888888899999999999999883
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00018 Score=84.14 Aligned_cols=122 Identities=15% Similarity=0.144 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHHhcC-CCccccccccccccCC-C-----CCCCc-
Q 001973 315 GSGVKMANQLLAGVHIASAAEAMAFGAR----L--GLNTRVLFNIITDSG-GSSWMFENRVPHMLDN-D-----YTPYS- 380 (988)
Q Consensus 315 a~~~Kl~~N~~~~~~~~~~~Ea~~la~~----~--Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~-~-----~~~~~- 380 (988)
++.+|.++|.+.+.++..++|.+.+.++ . ++|..++.++.+.|. -.|++++.....+... + +.+.|
T Consensus 304 ~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~ 383 (459)
T PRK09287 304 AEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFK 383 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHH
Confidence 3577888898888999999999988776 4 478889998888765 4566555433322211 1 11111
Q ss_pred -hhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 381 -ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 381 -~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
.+......++.++..+-+.|+|+|.+.++...|+..... .-...+++..+...|..
T Consensus 384 ~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~----~~~anliqaqRd~FGaH 440 (459)
T PRK09287 384 DILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTA----RLPANLIQAQRDYFGAH 440 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----CccHHHHHHHHhHhCCC
Confidence 233344555788999999999999999999766655433 22345888888777754
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00086 Score=64.50 Aligned_cols=93 Identities=20% Similarity=0.223 Sum_probs=73.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-----cCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-----ANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-----~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
++|..||+| .|..+|..|++.|++|++.|.+++.++.+.+.+..+ .+-..+.-+++|+|..+=|.+.-...++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~- 95 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL- 95 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH-
Confidence 589999999 999999999999999999999999999888876542 3334466789999999999888666665
Q ss_pred cccchhhhCCCCCEEEecCCCCH
Q 001973 222 GDLGAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p 244 (988)
.+.......-+|..+|+-.|
T Consensus 96 ---~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 96 ---ELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred ---HHHHHcCCCEEEEcCCCCCC
Confidence 56666666666666666543
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0007 Score=74.02 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=67.8
Q ss_pred CeEEEEccchHHHHHHHHHHhC-CCeE-EEEeCC--hhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS-NFTV-IGYDVY--RPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~-G~~V-~v~dr~--~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
|||||||+|.||..+++.+.+. +.++ .+++++ .++.......+...+++++++..+.|+|+.|.|.... .+..
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~~-- 78 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEHV-- 78 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHHH--
Confidence 6999999999999999999876 4553 344443 3333333333667788888874568999999998654 3332
Q ss_pred ccchhhhCCCCCEEEecCCC---CHHHHHHHHHHHHhc
Q 001973 223 DLGAVSALSSGASIILSSTV---SPGFVSQLERRLQFE 257 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~---~p~~~~~l~~~l~~~ 257 (988)
...+..|+-++..|+. .+....++.+...+.
T Consensus 79 ----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~ 112 (265)
T PRK13303 79 ----VPILKAGIDCAVISVGALADEALRERLEQAAEAG 112 (265)
T ss_pred ----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHC
Confidence 2334556555555553 455556666666553
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00016 Score=82.25 Aligned_cols=93 Identities=17% Similarity=0.093 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhhc-----cCCchhhhccccccccCCCCcchHHHHHHhHH------------HHH
Q 001973 11 LIASVEAISLGVQFGIHPWVLYDIISNA-----AGNSWIFKNYIPNLLRGDAKLHFLNAFIQNLG------------IAL 73 (988)
Q Consensus 11 ~~~~aEal~la~~~Gld~~~~~~~l~~~-----~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl~------------la~ 73 (988)
..++.|++.++++.|++++.+.++..++ ...+++++.+.+.+.+.++.+ ...|.||+. +++
T Consensus 216 ~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Sm~~D~~~~r~tEi~~i~G~i~ 293 (341)
T PRK08229 216 ALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLA--RSSMSDDLAAGRATEIDWINGEIV 293 (341)
T ss_pred HHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCcc--CchHHHHHHcCCcchHHHHhhHHH
Confidence 3789999999999999998887766665 456777777777777776654 235999999 799
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCC
Q 001973 74 DMAKTLAFPLPLLAVAHQQLILGLSHAHANDD 105 (988)
Q Consensus 74 ~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D 105 (988)
+.|++.|+++|..+.+.+.|+.+.+.|....-
T Consensus 294 ~~a~~~gv~~P~~~~~~~~~~~~~~~~~~~~~ 325 (341)
T PRK08229 294 RLAGRLGAPAPVNARLCALVHEAERAGARPAW 325 (341)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHHhCCCcCCC
Confidence 99999999999999999999999888766544
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00068 Score=79.07 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=57.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhc-CCc--ccCCHHHHhccCcEEEEEcCChH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNV-GGL--IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~-G~~--~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
...+|+|||+|.||..++..|...| .+|++|||+.++.+.+.+. |.. ..++..+.+.++|+||.|++.+.
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 3469999999999999999999999 7899999999988766653 432 22456677889999999988765
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00066 Score=80.46 Aligned_cols=102 Identities=11% Similarity=0.175 Sum_probs=72.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcc--cCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLI--ANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~--~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
++++|+|+|.+|.+++..|++.|++|+++||+.++.+.+.+. +... ..+..+ +.++|+||.|+|....+...
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~~~~~~---- 407 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSVTIPKA---- 407 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCCcchhH----
Confidence 589999999999999999999999999999999988877653 2111 122222 46899999999987533211
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD 265 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld 265 (988)
+. .+++|+...++.+. +.+...+ .|...++
T Consensus 408 ------l~--~~v~D~~Y~P~~T~--ll~~A~~--~G~~~~~ 437 (477)
T PRK09310 408 ------FP--PCVVDINTLPKHSP--YTQYARS--QGSSIIY 437 (477)
T ss_pred ------Hh--hhEEeccCCCCCCH--HHHHHHH--CcCEEEC
Confidence 11 38999999877665 4455544 3444443
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.001 Score=74.35 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=51.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHH----HHhcC-----Cc-ccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTK----FQNVG-----GL-IANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~----l~~~G-----~~-~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+|.+|.++|..|+.+| ++|.++|+++++.+. +.... .. .+++. +.+++||+||++++.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 58999999999999999999999 689999999877653 33221 01 12344 5689999999999875
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00055 Score=69.18 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=59.6
Q ss_pred CCeEEEEccchH-HHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAM-GFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..+|.|||.|.| |..++.+|.+.|.+|++.+|+. +++.+.+.++|+||.+++.+. ++.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii~--- 102 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LVK--- 102 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----eec---
Confidence 469999999997 9999999999999999999873 355677889999999999865 221
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...++++.++||.+.-
T Consensus 103 --~~~~~~~~viIDla~p 118 (168)
T cd01080 103 --GDMVKPGAVVIDVGIN 118 (168)
T ss_pred --HHHccCCeEEEEccCC
Confidence 1235668899998864
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00069 Score=75.92 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=55.1
Q ss_pred hcCCCCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHHH----hc-----CCcccCCHHHHhccCcEEEEE
Q 001973 141 AKSNSVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQ----NV-----GGLIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 141 m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~----~~-----G~~~~~s~~e~~~~aDvV~l~ 209 (988)
||++..+||+|||+|.+|..+|..|+..|. ++.++|++.++++... .. ......+.-+.+++||+|+++
T Consensus 1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIit 80 (315)
T PRK00066 1 MMKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVIT 80 (315)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEe
Confidence 566777899999999999999999999987 8999999887654322 21 122233444568999999998
Q ss_pred cCCh
Q 001973 210 VTNE 213 (988)
Q Consensus 210 vp~~ 213 (988)
...+
T Consensus 81 ag~~ 84 (315)
T PRK00066 81 AGAP 84 (315)
T ss_pred cCCC
Confidence 7643
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00086 Score=78.36 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=53.4
Q ss_pred CeEEEEccchHHHHHHH--HH----HhCCCeEEEEeCChhHHHHHHhc--------C----CcccCCHHHHhccCcEEEE
Q 001973 147 TRVGFIGLGAMGFGMAT--HL----LRSNFTVIGYDVYRPTLTKFQNV--------G----GLIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~--~L----~~~G~~V~v~dr~~~~~~~l~~~--------G----~~~~~s~~e~~~~aDvV~l 208 (988)
+||+|||.|.||.+++. .+ ..+|++|.+||+++++.+..... + +..++|..+++++||+||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 48999999999998666 34 45678999999999887765431 1 2357788999999999999
Q ss_pred EcCCh
Q 001973 209 MVTNE 213 (988)
Q Consensus 209 ~vp~~ 213 (988)
+++..
T Consensus 81 ai~~~ 85 (423)
T cd05297 81 TIQVG 85 (423)
T ss_pred eeEec
Confidence 99853
|
linked to 3D####ucture |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00088 Score=72.92 Aligned_cols=99 Identities=22% Similarity=0.267 Sum_probs=68.1
Q ss_pred CeEEEEcc-chHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|||+|+|+ |.||..++..+.+. ++++. ++|+++++.......++...+++.++++++|+|+.+.|.... .++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~-~~~~--- 77 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEAT-LENL--- 77 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHH-HHHH---
Confidence 69999998 99999999998864 57754 589988766544334566778999988889999988765443 3333
Q ss_pred cchhhhCCCCC-EEEecCCCCHHHHHHHHH
Q 001973 224 LGAVSALSSGA-SIILSSTVSPGFVSQLER 252 (988)
Q Consensus 224 ~~i~~~l~~g~-ivId~st~~p~~~~~l~~ 252 (988)
...+..|. +++-.+..++....++.+
T Consensus 78 ---~~al~~G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 78 ---EFALEHGKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred ---HHHHHcCCCEEEECCCCCHHHHHHHHH
Confidence 22233454 444433446666666665
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00099 Score=74.51 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=74.7
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhHHHHHHh----cCCc--ccCCHHHHhccCcEEEEEcCChHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRPTLTKFQN----VGGL--IANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~----~G~~--~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
....+++|||+|..+...+..+... -.+|++|||++++.+.+.+ .+.. .+++.++++++||+|++|+++..
T Consensus 126 ~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~- 204 (315)
T PRK06823 126 QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE- 204 (315)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC-
Confidence 3457899999999999999988763 2579999999999887654 2433 47899999999999999998754
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFV 247 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~ 247 (988)
.++. ...+++|+.|...++..|+..
T Consensus 205 --P~~~-----~~~l~~G~hi~~iGs~~p~~~ 229 (315)
T PRK06823 205 --PLLQ-----AEDIQPGTHITAVGADSPGKQ 229 (315)
T ss_pred --ceeC-----HHHcCCCcEEEecCCCCcccc
Confidence 3331 245779999888888777553
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00036 Score=66.71 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=58.8
Q ss_pred eEEEEc-cchHHHHHHHHHHhCCC-e-EEEEeCChhHHHHHHhc--------CCcccCCHHHHhccCcEEEEEcCChHHH
Q 001973 148 RVGFIG-LGAMGFGMATHLLRSNF-T-VIGYDVYRPTLTKFQNV--------GGLIANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 148 kIgiIG-~G~mG~~lA~~L~~~G~-~-V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
||+||| .|++|..+.+.|.++-+ + +.++.++.+.-+.+... ...+.+...+.+.++|+||+|+|+....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 799999 99999999999998643 4 56667766333333322 1223333345568999999999986643
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
+ .. . ..+.+|..|||.|+..
T Consensus 81 ~-~~---~---~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 81 E-LA---P---KLLKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HH---H---HHHHTTSEEEESSSTT
T ss_pred H-HH---H---HHhhCCcEEEeCCHHH
Confidence 3 32 1 2245788999999853
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00086 Score=74.60 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=73.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC-C-CeEEEEeCChhHHHHHHhc-----C--CcccCCHHHHhccCcEEEEEcCChHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS-N-FTVIGYDVYRPTLTKFQNV-----G--GLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~-----G--~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
...+++|||+|..|...+..+... . .+|.+|||++++.+++.+. | +..++++++++.+||+|++|+++..
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~- 194 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT- 194 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-
Confidence 456899999999999999988864 2 4799999999998876543 4 3457899999999999999999754
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFV 247 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~ 247 (988)
.++. ..++++|..|.-..+..|+..
T Consensus 195 --P~~~-----~~~l~pg~hV~aiGs~~p~~~ 219 (301)
T PRK06407 195 --PIFN-----RKYLGDEYHVNLAGSNYPNRR 219 (301)
T ss_pred --cEec-----HHHcCCCceEEecCCCCCCcc
Confidence 3331 235678877777777766543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00044 Score=79.27 Aligned_cols=95 Identities=23% Similarity=0.198 Sum_probs=69.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcc---c---CCHHHHhccCcEEEEEcCChHH-HH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLI---A---NSPAEAAKDVGVLVIMVTNEAQ-AE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~---~---~s~~e~~~~aDvV~l~vp~~~~-~~ 217 (988)
..+|.|||+|.+|...+..+...|.+|+++|+++++.+.+... +..+ . .++.+.+.++|+||.|++.+.. ..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p 246 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAP 246 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCC
Confidence 3579999999999999999999999999999999988877654 3211 1 2356677899999999843211 11
Q ss_pred HHHccccchhhhCCCCCEEEecCCC
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.++. ++....++++.+|||.+..
T Consensus 247 ~lit--~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 247 KLVS--NSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred cCcC--HHHHhcCCCCCEEEEEecC
Confidence 1111 3344567889999998843
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=71.76 Aligned_cols=106 Identities=23% Similarity=0.282 Sum_probs=87.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
+++||+|+|.+|+.+|.++...|..|+.||.-.- .+++.+.|+.. .+.+|++..||+|-+-+|-..+++.++. +.-
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~-vsl~Eil~~ADFitlH~PLtP~T~~lin--~~t 222 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQL-VSLEEILPKADFITLHVPLTPSTEKLLN--DET 222 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCc-hHHHHhcccee-eeHHHHHhhcCEEEEccCCCcchhhccC--HHH
Confidence 5899999999999999999999999998975322 23455567765 4789999999999999999888888885 445
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
...+++|..||+++-+..-....+-+.+..
T Consensus 223 fA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 223 FAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred HHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 677899999999998888777777777765
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=74.90 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=68.0
Q ss_pred CCCeEEEEccchHHHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhc-----CCc--ccCCHHHHhccCcEEEEEcCChHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR-SN-FTVIGYDVYRPTLTKFQNV-----GGL--IANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~-----G~~--~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
...+++|||+|.+|...+..|.. .+ .+|++|||++++.+.+.+. |.. ..++++++++++|+|+.|+|...
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~- 206 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET- 206 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC-
Confidence 34689999999999999999974 56 4699999999998887653 443 36789999999999999998744
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.++. ...+++|..+...+.-
T Consensus 207 --p~i~-----~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 207 --PILH-----AEWLEPGQHVTAMGSD 226 (326)
T ss_pred --cEec-----HHHcCCCcEEEeeCCC
Confidence 2221 2346677776655443
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00082 Score=66.05 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=51.7
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCC--eEEEEeCChhHHHHHHh----c------CCcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQN----V------GGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~----~------G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++.... . .........+.+++||+|+++...+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 59999999 9999999999998874 79999999876544321 1 1233446667788999999998553
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.001 Score=74.46 Aligned_cols=67 Identities=19% Similarity=0.174 Sum_probs=52.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhc--------C--CcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNV--------G--GLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~--------G--~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
+||+|||+|.+|.++|..|+..| ++|.++|+++++.+.+... + ........+.+++||+||++...+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 38999999999999999999999 6899999999887654431 1 122223334578999999999765
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00089 Score=75.55 Aligned_cols=94 Identities=23% Similarity=0.268 Sum_probs=72.0
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhC-C-CeEEEEeCChhHHHHHHhc-----C--CcccCCHHHHhccCcEEEEEcCChH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRS-N-FTVIGYDVYRPTLTKFQNV-----G--GLIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~-----G--~~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
....+|+|||+|.+|...+..|... + ..|.+|||++++.+++.+. + ....++.+++++ +|+|++|+|+..
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~ 205 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK 205 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC
Confidence 3456899999999999999999853 3 4699999999998876653 4 235778899887 999999999853
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHHH
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~ 246 (988)
.++. ..++++|+.|...++..|..
T Consensus 206 ---P~~~-----~~~l~~g~hV~~iGs~~p~~ 229 (326)
T PRK06046 206 ---PVVK-----AEWIKEGTHINAIGADAPGK 229 (326)
T ss_pred ---cEec-----HHHcCCCCEEEecCCCCCcc
Confidence 3331 24567888888777776654
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0017 Score=72.99 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=49.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHH--H--Hh----cC----CcccCCHHHHhccCcEEEEEc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTK--F--QN----VG----GLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~--l--~~----~G----~~~~~s~~e~~~~aDvV~l~v 210 (988)
+.+||+|||+|.||..+|..++..|+ +|.++|+++++.+. + .. .+ +..+++. +++++||+||++.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 34799999999999999999999995 89999999885421 1 11 11 2223565 5779999999977
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0014 Score=73.97 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=73.6
Q ss_pred CCCeEEEEccchHHHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhc-----CC--cccCCHHHHhccCcEEEEEcCChHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR-SN-FTVIGYDVYRPTLTKFQNV-----GG--LIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~-----G~--~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
...+++|||+|.+|...+..+.. .+ .+|.+|||++++.+++.+. +. ...++.++++.++|+|++|+|...
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~- 204 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT- 204 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC-
Confidence 44689999999999999888764 34 4799999999999887652 43 346888999999999999999764
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFV 247 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~ 247 (988)
.++ . ..+++|+.|+...+..|+..
T Consensus 205 --p~i----~--~~l~~G~hV~~iGs~~p~~~ 228 (325)
T PRK08618 205 --PVF----S--EKLKKGVHINAVGSFMPDMQ 228 (325)
T ss_pred --cch----H--HhcCCCcEEEecCCCCcccc
Confidence 233 1 45788999988888777554
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0019 Score=68.83 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=53.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh--cCCcc----cC---CHHHH-hccCcEEEEEcCChH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN--VGGLI----AN---SPAEA-AKDVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~--~G~~~----~~---s~~e~-~~~aDvV~l~vp~~~ 214 (988)
|+|.|||+|.+|..+|+.|.+.||+|++.|++++++++... ..... .+ .+.++ +.++|+++.++.++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~ 78 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE 78 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence 58999999999999999999999999999999999988544 33221 11 23333 568899999998765
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.019 Score=64.33 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=123.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCcchHHHHHHhHHHHHHHHHhcCC
Q 001973 2 VNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLHFLNAFIQNLGIALDMAKTLAF 81 (988)
Q Consensus 2 ~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl~la~~~a~~~g~ 81 (988)
.+|.++++=+.=+-|--.++++.|+|..++.+.+..- .+.+++.++..|- |.=.=+=||++-.+..|++.|.
T Consensus 208 aaNafLAtKIsFiNEia~ice~~g~D~~~V~~gIGlD-------~RIG~~fl~aG~G-yGGsCfPKD~~AL~~~a~~~~~ 279 (414)
T COG1004 208 AANAFLATKISFINEIANICEKVGADVKQVAEGIGLD-------PRIGNHFLNAGFG-YGGSCFPKDTKALIANAEELGY 279 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC-------chhhHhhCCCCCC-CCCcCCcHhHHHHHHHHHhcCC
Confidence 5799999999999999999999999999999988422 1122222322211 1122234999999999999999
Q ss_pred CCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccc------
Q 001973 82 PLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLG------ 155 (988)
Q Consensus 82 ~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G------ 155 (988)
+.++.+++.+.=+.-.. .+.+.+.+..+ + .-++|||.|+-
T Consensus 280 ~~~ll~avv~vN~~qk~---------~~~~~i~~~~~--l-----------------------~Gk~iavlgLafKpnTD 325 (414)
T COG1004 280 DPNLLEAVVEVNERRKD---------KLAEKILNHLG--L-----------------------KGKTIAVLGLAFKPNTD 325 (414)
T ss_pred chHHHHHHHHHHHHHHH---------HHHHHHHHhcC--C-----------------------CCcEEEEEEEeecCCCc
Confidence 98888777654332221 13333333222 0 01245555542
Q ss_pred ----hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCC
Q 001973 156 ----AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALS 231 (988)
Q Consensus 156 ----~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~ 231 (988)
.--..++..|.+.|.+|.+||+-...-....-.+...++++.++++.||+++++..+.+ ++++-+ +.+ +-
T Consensus 326 D~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~e-f~~~d~--~~~---~m 399 (414)
T COG1004 326 DMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWDE-FRDLDF--EKL---LM 399 (414)
T ss_pred cchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHHH-HhccCh--hhh---hc
Confidence 23456788899999999999965433222222246889999999999999999987654 554421 111 44
Q ss_pred CCCEEEec
Q 001973 232 SGASIILS 239 (988)
Q Consensus 232 ~g~ivId~ 239 (988)
++.+|+|.
T Consensus 400 ~~~~v~Dg 407 (414)
T COG1004 400 KTPVVIDG 407 (414)
T ss_pred cCCEEEec
Confidence 66777774
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0017 Score=71.63 Aligned_cols=97 Identities=12% Similarity=0.045 Sum_probs=68.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhcC-----CcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNVG-----GLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~G-----~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
.++.|+|+|.+|.+++..|...| .+|++++|+.++.+.+.+.- +....+..+.+.++|+||.|+|....-..-.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~~ 203 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGELPL 203 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCCCCC
Confidence 48999999999999999999999 78999999999988876531 1111133456688999999998754210000
Q ss_pred ccccchhhhCCCCCEEEecCCCCHH
Q 001973 221 YGDLGAVSALSSGASIILSSTVSPG 245 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~p~ 245 (988)
..-....++++.+++|..-.+..
T Consensus 204 --~~~~~~~l~~~~~v~DivY~P~~ 226 (278)
T PRK00258 204 --PPLPLSLLRPGTIVYDMIYGPLP 226 (278)
T ss_pred --CCCCHHHcCCCCEEEEeecCCCC
Confidence 00112346778999999875433
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0024 Score=70.11 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=66.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC-CCe-EEEEeCChhHH--HHHHhcCCcc-cCCHHHHhc-----cCcEEEEEcCChH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS-NFT-VIGYDVYRPTL--TKFQNVGGLI-ANSPAEAAK-----DVGVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~-G~~-V~v~dr~~~~~--~~l~~~G~~~-~~s~~e~~~-----~aDvV~l~vp~~~ 214 (988)
+++||||||+|++|+.+...+.+. +.+ +.++|++++.. +...+.|+.. .++.+++++ +.|+||.++|...
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~ 82 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGA 82 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHH
Confidence 457999999999999988888764 456 44679988642 4445568765 477888874 5889999999866
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
..+... .....|+.+||.+...
T Consensus 83 H~e~a~-------~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 83 HVRHAA-------KLREAGIRAIDLTPAA 104 (302)
T ss_pred HHHHHH-------HHHHcCCeEEECCccc
Confidence 444332 2345788999988653
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0039 Score=70.85 Aligned_cols=105 Identities=22% Similarity=0.188 Sum_probs=76.9
Q ss_pred CCCeEEEEccchH-HHHHHHHHHhCCC---eEEEEeCChhHHHHHHhc-CC-cccCCHHHHhcc--CcEEEEEcCChHHH
Q 001973 145 SVTRVGFIGLGAM-GFGMATHLLRSNF---TVIGYDVYRPTLTKFQNV-GG-LIANSPAEAAKD--VGVLVIMVTNEAQA 216 (988)
Q Consensus 145 ~~~kIgiIG~G~m-G~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~~--aDvV~l~vp~~~~~ 216 (988)
+++||||||+|.+ +...+..+.+.+. -|.++|+++++++.+.+. |+ ...+|++++++. .|+|++|+|+....
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence 3479999999954 4668888888763 377789999999887764 65 378899999875 59999999998866
Q ss_pred HHHHccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHh
Q 001973 217 ESVLYGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~ 256 (988)
+.++ ..+..|+ +++.. =+..+..++++.+...+
T Consensus 82 e~~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 82 ELAL-------AALEAGKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred HHHH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 6554 2344454 44443 25567788888777665
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0026 Score=71.45 Aligned_cols=64 Identities=30% Similarity=0.399 Sum_probs=49.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHH----HHhc----C----CcccCCHHHHhccCcEEEEEc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTK----FQNV----G----GLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~----l~~~----G----~~~~~s~~e~~~~aDvV~l~v 210 (988)
.+||+|||+|.||..++..++..| .+|.+||+++++.+. +... + ++.+++++ ++++||+|+++.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 469999999999999999999999 689999999865432 1111 1 12235555 779999999999
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0022 Score=71.45 Aligned_cols=113 Identities=21% Similarity=0.167 Sum_probs=83.0
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhHHHHHHh----cC---CcccCCHHHHhccCcEEEEEcCChHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRPTLTKFQN----VG---GLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~----~G---~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
....++|||+|.++......+.+- .-+|.+|+|+++..+++.. .+ +..++|.++++++||+|+.|+|+..
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~- 207 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE- 207 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC-
Confidence 346899999999999999999863 3579999999999988763 33 4678999999999999999999866
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
.++. ...+++|.-|.-.++..|+..+--.+.+.. .+.-++|.+
T Consensus 208 --Pil~-----~~~l~~G~hI~aiGad~p~k~Eld~e~l~r--a~~vvvD~~ 250 (330)
T COG2423 208 --PVLK-----AEWLKPGTHINAIGADAPGKRELDPEVLAR--ADRVVVDSL 250 (330)
T ss_pred --Ceec-----HhhcCCCcEEEecCCCCcccccCCHHHHHh--cCeEEEcCH
Confidence 3331 345778888887777666554433344433 224455543
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0043 Score=67.84 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=66.3
Q ss_pred CeEEEEc-cchHHHHHHHHHHh-CCCeE-EEEeCC-hhHH----HHHH---hcCCcccCCHHHHhccCcEEEEEcCChHH
Q 001973 147 TRVGFIG-LGAMGFGMATHLLR-SNFTV-IGYDVY-RPTL----TKFQ---NVGGLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~-~G~~V-~v~dr~-~~~~----~~l~---~~G~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
+||+|+| +|.||..+++.+.+ .++++ .++||+ ++.. ..+. ..|+.++++++++...+|+|+.+.+...
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~- 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEG- 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHH-
Confidence 6999999 69999999999986 46774 447854 3221 1221 1256667888887557899999997655
Q ss_pred HHHHHccccchhhhCCCC-CEEEecCCCCHHHHHHHHHHHHh
Q 001973 216 AESVLYGDLGAVSALSSG-ASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g-~ivId~st~~p~~~~~l~~~l~~ 256 (988)
..+.+ ...+..| .+|+-++...+...+++.+...+
T Consensus 81 ~~~~~------~~al~~g~~vVigttg~~~e~~~~l~~aA~~ 116 (266)
T TIGR00036 81 VLNHL------KFALEHGVRLVVGTTGFSEEDKQELADLAEK 116 (266)
T ss_pred HHHHH------HHHHHCCCCEEEECCCCCHHHHHHHHHHHhc
Confidence 33333 2233445 45555555666666666665443
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=72.61 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=47.4
Q ss_pred EEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHH----HHhc----C----CcccCCHHHHhccCcEEEEEcCC
Q 001973 149 VGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTK----FQNV----G----GLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~----l~~~----G----~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+. +.+. + +..+++. +.+++||+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCC
Confidence 6899999999999999998887 99999999875432 1211 1 1223454 558999999998854
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00081 Score=75.34 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=62.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhc----CC--cccCCHHHHhccCcEEEEEcCChHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR-SN-FTVIGYDVYRPTLTKFQNV----GG--LIANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~----G~--~~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
...+++|||+|..+...+..|.. .+ .+|.+|+|++++.+++.+. +. ..++|+++++++||+|++|+|.....
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~ 206 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA 206 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC
Confidence 44689999999999999998876 33 4799999999998877653 33 45889999999999999999875410
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHH
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~ 246 (988)
.++. ...+++|..|...++..|+.
T Consensus 207 -P~~~-----~~~l~~g~hi~~iGs~~~~~ 230 (313)
T PF02423_consen 207 -PVFD-----AEWLKPGTHINAIGSYTPGM 230 (313)
T ss_dssp -ESB------GGGS-TT-EEEE-S-SSTTB
T ss_pred -cccc-----HHHcCCCcEEEEecCCCCch
Confidence 2221 24578898888888776643
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0025 Score=56.87 Aligned_cols=62 Identities=24% Similarity=0.301 Sum_probs=50.3
Q ss_pred CeEEEEccchHHHHHHHHHHhC-CCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS-NFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
++++|+|.|.+|..++..|.+. +.+|++||| |++|.|++.+..+.+ .
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~------~ 71 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLE------E 71 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchH------H
Confidence 5899999999999999999998 678999998 999999987654332 1
Q ss_pred hhhhCCCCCEEEecC
Q 001973 226 AVSALSSGASIILSS 240 (988)
Q Consensus 226 i~~~l~~g~ivId~s 240 (988)
....+.++.+|+|++
T Consensus 72 ~~~~~~~~~~v~~~a 86 (86)
T cd05191 72 ATAKINEGAVVIDLA 86 (86)
T ss_pred HHHhcCCCCEEEecC
Confidence 234567788998864
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.024 Score=59.92 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=80.2
Q ss_pred cCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec--
Q 001973 188 VGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-- 265 (988)
Q Consensus 188 ~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-- 265 (988)
.|+++++|..|+++++|++++-+|-....-.++ +.+.+++++|.+|.+.+|++|...-.+-+.+.+ +++...+
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R--~DvgIsS~H 201 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGR--DDLNVTSYH 201 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCc--ccCCeeccC
Confidence 488899999999999999999999877545555 678899999999999999998776655555543 2332222
Q ss_pred -CcccCCcccccCCCeEEEEe-CCHHHHHHHHHHHHhcCCeEEEE
Q 001973 266 -APVSGGVKRASMGELTIMAA-GTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 266 -apv~g~~~~a~~g~l~~~~g-g~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
+.|-+.+ |+..+--+ .+++..+++.++.+..++..|.+
T Consensus 202 PaaVPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~ 241 (342)
T PRK00961 202 PGAVPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKM 241 (342)
T ss_pred CCCCCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 1222222 33222111 37889999999999999998876
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.031 Score=59.25 Aligned_cols=114 Identities=15% Similarity=0.254 Sum_probs=82.0
Q ss_pred cCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 188 VGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 188 ~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
.|+++++|..|+++++|++++-+|-....-.++ +.+.+++++|.+|.+.+|++|...-.+-+.+.+ .++...+-
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R--~DvgVsS~- 198 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGR--EDLNVTSY- 198 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCc--ccCCeecc-
Confidence 488899999999999999999999877545555 678899999999999999998766555555543 33333222
Q ss_pred ccCCcccccCCCeEEEEe-CCHHHHHHHHHHHHhcCCeEEEE
Q 001973 268 VSGGVKRASMGELTIMAA-GTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 268 v~g~~~~a~~g~l~~~~g-g~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
.-++.+... ++..+.-| .+++..+++.++.+..++..|.+
T Consensus 199 HPaaVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 199 HPGCVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred CCCCCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCeeec
Confidence 112222222 44344333 47889999999999999988876
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=72.71 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=71.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhHHHHHHh----cC--CcccCCHHHHhccCcEEEEEcCChHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRPTLTKFQN----VG--GLIANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~----~G--~~~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
...+++|||+|..+......+..- -.+|++|+|++++.+.+.+ .+ +..+++++++++++|+|++|+++.. .
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~ 206 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-N 206 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-C
Confidence 346899999999999888777653 2579999999999887653 23 3457899999999999999997532 1
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHH
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFV 247 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~ 247 (988)
..++. .+.+++|+.|.-..+..|...
T Consensus 207 ~Pvl~-----~~~lkpG~hV~aIGs~~p~~~ 232 (346)
T PRK07589 207 ATILT-----DDMVEPGMHINAVGGDCPGKT 232 (346)
T ss_pred Cceec-----HHHcCCCcEEEecCCCCCCcc
Confidence 12221 235678887777777666543
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0023 Score=72.45 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=57.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhc-----CCc--ccCCHHHHhccCcEEEEEcCChH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR-SN-FTVIGYDVYRPTLTKFQNV-----GGL--IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~-----G~~--~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
..++|+|||+|.+|...+..|.. .+ .+|++|+|++++.+.+.+. |+. ..+++++++.++|+|+.|+|...
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~ 209 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE 209 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC
Confidence 34689999999999999998885 44 5799999999999888652 443 36788999999999999998743
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0021 Score=66.86 Aligned_cols=92 Identities=18% Similarity=0.058 Sum_probs=65.2
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----CCc--c--cCC---HHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----GGL--I--ANS---PAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----G~~--~--~~s---~~e~~~~aDvV~l~vp~~ 213 (988)
+++.|+|. |.+|..++..|++.|++|++++|+.++.+.+.+. +.. . ..+ ..++++++|+||.++|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 58999995 9999999999999999999999999988776542 211 1 122 346778999999999876
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCH
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p 244 (988)
.... . .......++.+++|..-..+
T Consensus 109 ~~~~--~----~~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 109 VELL--E----KLAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred ceec--h----hhhcccCceeEEEEccCCCC
Confidence 6311 1 11112344778998866543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0084 Score=68.44 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=71.2
Q ss_pred CCeEEEEccchHHHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHHH
Q 001973 146 VTRVGFIGLGAMGFG-MATHLLRS-NFTVI-GYDVYRPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl 220 (988)
++||||||+|.||.. .+..+.+. +.++. ++|+++++... ...+....+|++++++ +.|+|++|+|+....+.+.
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~ 82 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK 82 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-hCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 479999999999984 56666654 57754 68999877542 1124567789999986 5799999999987666554
Q ss_pred ccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 221 YGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 221 ~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
..+..| +++++.- +.....++++.+...+
T Consensus 83 -------~al~aGkhVl~EKPla~t~~ea~~l~~~a~~ 113 (346)
T PRK11579 83 -------AALEAGKHVVVDKPFTVTLSQARELDALAKS 113 (346)
T ss_pred -------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 223344 4555532 4556777787776655
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0024 Score=73.26 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=65.9
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhC--C-CeEEEEeCChhHHHHHHhc------C---CcccCCHHHHhccCcEEEEEcC
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRS--N-FTVIGYDVYRPTLTKFQNV------G---GLIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~--G-~~V~v~dr~~~~~~~l~~~------G---~~~~~s~~e~~~~aDvV~l~vp 211 (988)
....+++|||+|.++......++.- . -+|++|||++++.+.+.+. | +..++|+++++++||+|++|++
T Consensus 153 ~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~ 232 (379)
T PRK06199 153 KDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNS 232 (379)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccC
Confidence 3456899999999999999999873 2 4799999999998776532 2 4457999999999999999997
Q ss_pred ChHH---HHHHHccccchhhhCCCCCEEE
Q 001973 212 NEAQ---AESVLYGDLGAVSALSSGASII 237 (988)
Q Consensus 212 ~~~~---~~~vl~~~~~i~~~l~~g~ivI 237 (988)
+... ...++. ..++++|..|+
T Consensus 233 s~~~~~s~~Pv~~-----~~~lkpG~hv~ 256 (379)
T PRK06199 233 GETGDPSTYPYVK-----REWVKPGAFLL 256 (379)
T ss_pred CCCCCCCcCcEec-----HHHcCCCcEEe
Confidence 5331 112221 23567787665
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0028 Score=69.96 Aligned_cols=165 Identities=19% Similarity=0.102 Sum_probs=101.7
Q ss_pred cCCCCcchHHH---HHHhHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHhh--------------Cc--CC-CCCchh
Q 001973 54 RGDAKLHFLNA---FIQNLGIALDMAKTL-----AFPLPLLAVAHQQLILGLS--------------HA--HA-NDDNPP 108 (988)
Q Consensus 54 ~~~~~~f~l~l---~~KDl~la~~~a~~~-----g~~~p~~~~~~~~~~~a~~--------------~G--~g-~~D~~~ 108 (988)
+..|.+|.++. --.|+.-+++..+.. .+.+|.-+.+.++.+...+ .| .| +-|+..
T Consensus 34 ~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~D~~~~~A~~iGAvNTv~~~~g~l~G~NTD~~G 113 (284)
T PRK12549 34 RYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHLDELSDDARALGAVNTVVFRDGRRIGHNTDWSG 113 (284)
T ss_pred CeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCHHHHHhCCceEEEecCCEEEEEcCCHHH
Confidence 34455554321 135666666655443 4567877777776664332 11 11 456666
Q ss_pred HHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHh
Q 001973 109 LVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~ 187 (988)
+++.+++.. . ....++|.|||+|.+|.+++..|++.|. +|+++||+.++++.+.+
T Consensus 114 ~~~~l~~~~-~-----------------------~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~ 169 (284)
T PRK12549 114 FAESFRRGL-P-----------------------DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALAD 169 (284)
T ss_pred HHHHHHhhc-c-----------------------CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 666554210 0 0012489999999999999999999997 79999999999988765
Q ss_pred c-----C-Cc--ccCCHHHHhccCcEEEEEcCChHHHHHHHccccch-hhhCCCCCEEEecCCCCHHH
Q 001973 188 V-----G-GL--IANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA-VSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 188 ~-----G-~~--~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i-~~~l~~g~ivId~st~~p~~ 246 (988)
. . .. ..++..+.+.++|+||.|+|....-..- ..+ ...+.++.+++|..-..+.|
T Consensus 170 ~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~----~~~~~~~l~~~~~v~DivY~P~~T 233 (284)
T PRK12549 170 ELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHPG----LPLPAELLRPGLWVADIVYFPLET 233 (284)
T ss_pred HHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCC----CCCCHHHcCCCcEEEEeeeCCCCC
Confidence 2 1 11 1234455678899999998854210000 001 13466788999988765443
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.003 Score=71.74 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=57.6
Q ss_pred CeEEEEcc-chHHHHHHHHHHhC-CCeEEE-EeCChhHHHHHHhc-----CC--cccCCHH-HHhccCcEEEEEcCChHH
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRS-NFTVIG-YDVYRPTLTKFQNV-----GG--LIANSPA-EAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~-G~~V~v-~dr~~~~~~~l~~~-----G~--~~~~s~~-e~~~~aDvV~l~vp~~~~ 215 (988)
+||+|||+ |.+|..+++.|.++ ++++.. .++ .+..+.+.+. +. ...++.. ....++|+||+|+|+...
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH
Confidence 69999996 99999999999987 567655 553 3222222211 11 0122222 245689999999999765
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
.+.+. . .+..|..|||.|+..
T Consensus 82 ~~~v~----~---a~~aG~~VID~S~~f 102 (343)
T PRK00436 82 MDLAP----Q---LLEAGVKVIDLSADF 102 (343)
T ss_pred HHHHH----H---HHhCCCEEEECCccc
Confidence 44433 2 234689999999754
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.012 Score=74.83 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=73.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC-Ce-------------EEEEeCChhHHHHHHhc--CC---cc-cCCHHHHh---cc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN-FT-------------VIGYDVYRPTLTKFQNV--GG---LI-ANSPAEAA---KD 202 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G-~~-------------V~v~dr~~~~~~~l~~~--G~---~~-~~s~~e~~---~~ 202 (988)
++||+|||+|.||...+..|++.. .+ |++.|++++.++++.+. ++ .. .++.+++. ++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 569999999999999999998753 33 99999999998887663 32 22 45555544 67
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+|+|++|+|.......+ ...+..|+-+++.|. .....+++.+...+
T Consensus 649 ~DaVIsalP~~~H~~VA-------kaAieaGkHvv~eky-~~~e~~~L~e~Ak~ 694 (1042)
T PLN02819 649 VDVVISLLPASCHAVVA-------KACIELKKHLVTASY-VSEEMSALDSKAKE 694 (1042)
T ss_pred CCEEEECCCchhhHHHH-------HHHHHcCCCEEECcC-CHHHHHHHHHHHHH
Confidence 99999999986643322 223445666777774 45556667666655
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.016 Score=65.51 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=75.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC--Ce-EEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCCh----HHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN--FT-VIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNE----AQAE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G--~~-V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~----~~~~ 217 (988)
..||||||+ .||...+..+.+.. ++ |-++|+++++.+++.+. |+...+|.++++++.|++++++|+. ...+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e 81 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSA 81 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHH
Confidence 369999999 68999999998754 66 55689999999888764 7778899999999899999998752 2222
Q ss_pred HHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+ ...+..|+-|+.---.....++++.+...+
T Consensus 82 ~a-------~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 82 LA-------RALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred HH-------HHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 22 223445655554444457788888777665
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0031 Score=70.53 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=48.1
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCC--eEEEEeCCh--hHHHH----HHh----cC----CcccCCHHHHhccCcEEEEE
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNF--TVIGYDVYR--PTLTK----FQN----VG----GLIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~--~~~~~----l~~----~G----~~~~~s~~e~~~~aDvV~l~ 209 (988)
|||+|||+ |.+|..++..|+..|+ +|+++|+++ ++++. +.+ .+ +...++. +.+++||+||++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 59999998 9999999999999997 499999954 33321 111 12 1223454 458999999999
Q ss_pred cCCh
Q 001973 210 VTNE 213 (988)
Q Consensus 210 vp~~ 213 (988)
+..+
T Consensus 80 ag~p 83 (309)
T cd05294 80 AGVP 83 (309)
T ss_pred cCCC
Confidence 9743
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0083 Score=67.10 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=49.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc-------CCcccCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV-------GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~-------G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
.+||+|||+|.+|..+|..|+..|. ++.+||++.++++. +... .+..+.++++ +++||+|+++...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~ 81 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA 81 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence 4699999999999999999998884 79999998865533 2221 1222356665 7999999997654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0037 Score=71.10 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=60.1
Q ss_pred CeEEEEcc-chHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhc-----C---Cccc-CCHHHHhccCcEEEEEcCChH
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQNV-----G---GLIA-NSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~-----G---~~~~-~s~~e~~~~aDvV~l~vp~~~ 214 (988)
|||+|||+ |.+|..+.+.|.++ ++++. +++.+.+.-+.+.+. + ..+. .+..+..+++|++|+|+|+..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 48999998 99999999999987 56777 556554322222211 1 1111 145566568999999999976
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
..+-+. .+ ...|..|||.|+..
T Consensus 81 s~~~~~----~~---~~~G~~VIDlS~~f 102 (346)
T TIGR01850 81 SAELAP----EL---LAAGVKVIDLSADF 102 (346)
T ss_pred HHHHHH----HH---HhCCCEEEeCChhh
Confidence 443332 22 34689999999753
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0062 Score=66.74 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=64.4
Q ss_pred CeEEEEccchHHHHHHHHHHhC-CCeEE-EEeCChhHH--HHHHhcCCcc-cCCHHHHhc--cCcEEEEEcCChHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS-NFTVI-GYDVYRPTL--TKFQNVGGLI-ANSPAEAAK--DVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~--~~l~~~G~~~-~~s~~e~~~--~aDvV~l~vp~~~~~~~v 219 (988)
+||||||+|.||..++..+.+. +.++. ++|+++++. +...+.|... .++.+++++ +.|+||+|+|+....+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 5899999999999998877754 56644 578888753 3444567654 457788775 578999999998755544
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
. ..+..|+.++|.+..
T Consensus 82 ~-------~al~aGk~VIdekPa 97 (285)
T TIGR03215 82 R-------LLAELGKIVIDLTPA 97 (285)
T ss_pred H-------HHHHcCCEEEECCcc
Confidence 3 335578888887754
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0028 Score=74.64 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCccccccccccccCC-CC-----CCCc-
Q 001973 315 GSGVKMANQLLAGVHIASAAEAMAFGAR------LGLNTRVLFNIITDSG-GSSWMFENRVPHMLDN-DY-----TPYS- 380 (988)
Q Consensus 315 a~~~Kl~~N~~~~~~~~~~~Ea~~la~~------~Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~-~~-----~~~~- 380 (988)
++.+|.+.|.+...++..++|.+.+.++ .++|..++.++.+.|. -.|++++...+.+... +. .+.|
T Consensus 312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~ 391 (467)
T TIGR00873 312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFK 391 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHH
Confidence 3577888888888899999999988776 6789999999988774 4566655443332221 11 1111
Q ss_pred -hhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 381 -ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 381 -~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
.+......++.++..+-+.|+|+|.+.++...|...... .--..+++..+...|..
T Consensus 392 ~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~----~~~~nliqaqRd~FGaH 448 (467)
T TIGR00873 392 DALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTA----RLPANLLQAQRDYFGAH 448 (467)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----cccHHHHHHHHHHhccc
Confidence 234445556888999999999999999999888876652 22355888888777743
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0054 Score=72.68 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=55.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-cCCcc-------cCCHHHH-hccCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-VGGLI-------ANSPAEA-AKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~G~~~-------~~s~~e~-~~~aDvV~l~vp~~~~ 215 (988)
|+|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+ .|... ...+.++ +.++|.++++++++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 58999999999999999999999999999999999998876 44322 1123334 5689999999987653
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.017 Score=54.42 Aligned_cols=72 Identities=19% Similarity=0.320 Sum_probs=55.8
Q ss_pred EEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc----cCCHHH----HhccCcEEEEEcCChHHHHHHH
Q 001973 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI----ANSPAE----AAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~----~~s~~e----~~~~aDvV~l~vp~~~~~~~vl 220 (988)
|-|+|.|.+|..++..|.+.+.+|++.|++++..+.+.+.|..+ .++..- -+++++.++++.+++..-..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 56899999999999999997779999999999999999988643 122221 2468899999999876444443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0059 Score=66.68 Aligned_cols=74 Identities=23% Similarity=0.195 Sum_probs=61.2
Q ss_pred CCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||.|. +|.++|..|...|.+|++++++. .++.+.+++||+||.+++.+.-+.
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~------- 216 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVT------- 216 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccC-------
Confidence 47999999988 99999999999999999998742 356778899999999999876221
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.++.
T Consensus 217 --~~~vk~gavVIDvGi~ 232 (286)
T PRK14175 217 --KDVVKEGAVIIDVGNT 232 (286)
T ss_pred --HHHcCCCcEEEEcCCC
Confidence 1346789999998875
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0081 Score=68.08 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=29.9
Q ss_pred CeEEEEccchHHHHHHHHHHhC-CCeEEE-EeCChhHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS-NFTVIG-YDVYRPTLTKF 185 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~-G~~V~v-~dr~~~~~~~l 185 (988)
+||||+|+|.||..+++.+.+. +++|.+ +|++++....+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~l 42 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARV 42 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHH
Confidence 6999999999999999998864 467554 56676555543
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0066 Score=67.69 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=50.5
Q ss_pred EEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhc--------C-Ccc--cCCHHHHhccCcEEEEEcCChH
Q 001973 149 VGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNV--------G-GLI--ANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~--------G-~~~--~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
|+|||+|.+|+++|..|+..| ++++++|+++++++..... . .+. +++ .+.+++||+||++...+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence 689999999999999999998 6899999998876654431 0 111 344 467899999999998643
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0067 Score=66.37 Aligned_cols=62 Identities=27% Similarity=0.418 Sum_probs=49.8
Q ss_pred EEEEcc-chHHHHHHHHHHhCC----CeEEEEeCChhHHHHHHh-----------cCCcccCCHHHHhccCcEEEEEc
Q 001973 149 VGFIGL-GAMGFGMATHLLRSN----FTVIGYDVYRPTLTKFQN-----------VGGLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 149 IgiIG~-G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~-----------~G~~~~~s~~e~~~~aDvV~l~v 210 (988)
|+|||+ |.||..++..|+..| .+|.+||+++++.+.... ..++.++++.+++++||+|+++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 689999 999999999999998 799999999876544222 12234567788999999999965
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0071 Score=71.30 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=70.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-cCC--------------------------HHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-ANS--------------------------PAEA 199 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-~~s--------------------------~~e~ 199 (988)
.|+.|+|+|.+|...+..+...|..|+++|+++++.+.+...|... .-+ ..+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999988888777653 001 3345
Q ss_pred hccCcEEEEEc-----CChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 200 AKDVGVLVIMV-----TNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 200 ~~~aDvV~l~v-----p~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
++++|+||.|+ |.|.- +. ++..+.+++|.+|||.+..
T Consensus 245 ~~~~DIVI~TalipG~~aP~L----it--~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 245 AKEVDIIITTALIPGKPAPKL----IT--EEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred hCCCCEEEECcccCCCCCCee----eh--HHHHhhCCCCCEEEEeeeC
Confidence 67899999998 44421 11 3446678899999998873
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.004 Score=63.20 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=66.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccC--------------------------CHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIAN--------------------------SPAEA 199 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~--------------------------s~~e~ 199 (988)
..+|.|+|.|..|..-+..|...|++|+++|.++++.+.+...+..... ...+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 99 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEF 99 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHH
Confidence 4699999999999999999999999999999999988887776543211 23456
Q ss_pred hccCcEEEEEcC--ChHHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 200 AKDVGVLVIMVT--NEAQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 200 ~~~aDvV~l~vp--~~~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
+..+|+|+.+.- .... -.++. ++..+.++++.+|+|.|-
T Consensus 100 i~~~d~vI~~~~~~~~~~-P~lvt--~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 100 IAPADIVIGNGLYWGKRA-PRLVT--EEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHH-SEEEEHHHBTTSS----SBE--HHHHHTSSTTEEEEETTG
T ss_pred HhhCcEEeeecccCCCCC-CEEEE--hHHhhccCCCceEEEEEe
Confidence 788999997543 3222 22221 445667889999999974
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0098 Score=59.47 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=71.6
Q ss_pred HHHHhcCCCCcHHHHHHHHH---HHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEE
Q 001973 74 DMAKTLAFPLPLLAVAHQQL---ILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVG 150 (988)
Q Consensus 74 ~~a~~~g~~~p~~~~~~~~~---~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIg 150 (988)
++++..|+.. ++.++-| -+.-..|+| .|...+.+.+.+..|.+ ++.++.
T Consensus 37 els~~~~vds---atIRrDfSYFG~lGkrG~G-YnV~~L~~ff~~~Lg~~------------------------~~tnvi 88 (211)
T COG2344 37 ELSEALGVDS---ATIRRDFSYFGELGKRGYG-YNVKYLRDFFDDLLGQD------------------------KTTNVI 88 (211)
T ss_pred HHHHHhCCCH---HHHhhhhHHHHhcCCCCCC-ccHHHHHHHHHHHhCCC------------------------cceeEE
Confidence 4666667663 4444433 344455555 56666777766655532 224899
Q ss_pred EEccchHHHHHHHHH-H-hCCCe-EEEEeCChhHHHHHHhcCCc--ccCCHHHHhc--cCcEEEEEcCChH
Q 001973 151 FIGLGAMGFGMATHL-L-RSNFT-VIGYDVYRPTLTKFQNVGGL--IANSPAEAAK--DVGVLVIMVTNEA 214 (988)
Q Consensus 151 iIG~G~mG~~lA~~L-~-~~G~~-V~v~dr~~~~~~~l~~~G~~--~~~s~~e~~~--~aDvV~l~vp~~~ 214 (988)
+||+|++|.+++..- . ++|++ +.+||.+++.+-.-.. ++. -.++++..++ +.|+.++|||...
T Consensus 89 iVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~-~v~V~~~d~le~~v~~~dv~iaiLtVPa~~ 158 (211)
T COG2344 89 IVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIG-DVPVYDLDDLEKFVKKNDVEIAILTVPAEH 158 (211)
T ss_pred EEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccC-CeeeechHHHHHHHHhcCccEEEEEccHHH
Confidence 999999999999753 3 56776 6778999987643221 222 2445666665 6788888888654
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.018 Score=70.61 Aligned_cols=99 Identities=13% Similarity=0.165 Sum_probs=70.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc----cCCHH---HH-hccCcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI----ANSPA---EA-AKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~----~~s~~---e~-~~~aDvV~l~vp~~~~~~~ 218 (988)
++|-|+|.|.+|..+++.|.++|+++++.|.|+++++.+++.|..+ .++++ ++ ++++|.++++++++.....
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~ 480 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMK 480 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHH
Confidence 5899999999999999999999999999999999999999887643 22222 11 4689999999999876655
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQL 250 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l 250 (988)
+. .......|...++- ....+.....+
T Consensus 481 i~----~~~r~~~p~~~Iia-Ra~~~~~~~~L 507 (601)
T PRK03659 481 IV----ELCQQHFPHLHILA-RARGRVEAHEL 507 (601)
T ss_pred HH----HHHHHHCCCCeEEE-EeCCHHHHHHH
Confidence 54 22333444433333 33335554443
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.022 Score=69.38 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=59.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc----cCCHH---H-HhccCcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI----ANSPA---E-AAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~----~~s~~---e-~~~~aDvV~l~vp~~~~~~~ 218 (988)
-+|-|+|+|.+|+.+++.|.++|++|++.|.|+++++++++.|... .++.+ + -++++|.++++++++.....
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 4799999999999999999999999999999999999999887543 12222 1 14588999999998765444
Q ss_pred HH
Q 001973 219 VL 220 (988)
Q Consensus 219 vl 220 (988)
+.
T Consensus 498 iv 499 (558)
T PRK10669 498 IV 499 (558)
T ss_pred HH
Confidence 43
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.013 Score=61.15 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=31.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVY 178 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~ 178 (988)
..+|+|||+|.||+.+|.+|++.|+ +++++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3589999999999999999999998 69999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.014 Score=61.63 Aligned_cols=116 Identities=18% Similarity=0.267 Sum_probs=76.3
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhhCcCC--CCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeE
Q 001973 72 ALDMAKTLAFPLPLLAVAHQQLILGLSHAHA--NDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRV 149 (988)
Q Consensus 72 a~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g--~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kI 149 (988)
..++++..|+.. .++++-+......|.. +.+...+++.+++..+.. ...+|
T Consensus 35 ~~~L~~~~~v~~---~tirrDl~~l~~~G~~~~gy~v~~l~~~~~~~l~~~------------------------~~~rV 87 (213)
T PRK05472 35 SKELAEALGVDS---AQIRKDLSYFGEFGKRGVGYNVEELLEFIEKILGLD------------------------RTWNV 87 (213)
T ss_pred HHHHHHHhCcCH---HHHHHHHHHHHhcCCCCCCeeHHHHHHHHHHHhCCC------------------------CCcEE
Confidence 456777777764 4677777766666543 456666667666655432 11389
Q ss_pred EEEccchHHHHHHHHH--HhCCCeEEE-EeCChhHHHHHHhcCC--cccCCHHHHhcc--CcEEEEEcCChHH
Q 001973 150 GFIGLGAMGFGMATHL--LRSNFTVIG-YDVYRPTLTKFQNVGG--LIANSPAEAAKD--VGVLVIMVTNEAQ 215 (988)
Q Consensus 150 giIG~G~mG~~lA~~L--~~~G~~V~v-~dr~~~~~~~l~~~G~--~~~~s~~e~~~~--aDvV~l~vp~~~~ 215 (988)
+|||+|.+|..++..+ ...|+++.+ +|+++++..... .|. ...+++.+.+++ .|.+++|+|....
T Consensus 88 ~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~ 159 (213)
T PRK05472 88 ALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAA 159 (213)
T ss_pred EEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhH
Confidence 9999999999999864 356788665 698877653221 122 223456666654 8999999998653
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.012 Score=68.23 Aligned_cols=100 Identities=20% Similarity=0.218 Sum_probs=62.6
Q ss_pred EEEEccchHHHHHHHHHHhCC-C-eEEEEeCChhHHHHHHhc--CCcc------cC---CHHHHhccCcEEEEEcCChHH
Q 001973 149 VGFIGLGAMGFGMATHLLRSN-F-TVIGYDVYRPTLTKFQNV--GGLI------AN---SPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~G-~-~V~v~dr~~~~~~~l~~~--G~~~------~~---s~~e~~~~aDvV~l~vp~~~~ 215 (988)
|.|+|.|.+|+.++..|++.+ + +|++.||+.++++++.+. +..+ .. ++.++++++|+|+.|+|...
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~- 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFF- 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGG-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccch-
Confidence 789999999999999999987 4 899999999999988753 2110 12 35567788999999987652
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
-..++ + ..+..|.-.||.|- .......+.+...+
T Consensus 80 ~~~v~---~---~~i~~g~~yvD~~~-~~~~~~~l~~~a~~ 113 (386)
T PF03435_consen 80 GEPVA---R---ACIEAGVHYVDTSY-VTEEMLALDEEAKE 113 (386)
T ss_dssp HHHHH---H---HHHHHT-EEEESS--HHHHHHHCHHHHHH
T ss_pred hHHHH---H---HHHHhCCCeeccch-hHHHHHHHHHHHHh
Confidence 23333 1 12334667788332 13334444444443
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0072 Score=71.23 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hc--CCCHHHHHHHHHhcC-CCccccccccccccCC-C-----CCCCc
Q 001973 314 AGSGVKMANQLLAGVHIASAAEAMAFGA----RL--GLNTRVLFNIITDSG-GSSWMFENRVPHMLDN-D-----YTPYS 380 (988)
Q Consensus 314 ~a~~~Kl~~N~~~~~~~~~~~Ea~~la~----~~--Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~-~-----~~~~~ 380 (988)
.++.+|.++|.+...++..++|.+.+.+ .+ ++|..++.++.+.|. -.|++++.....+... + +.+.|
T Consensus 317 ~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~ 396 (470)
T PTZ00142 317 KKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDF 396 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHHH
Confidence 4567888889999999999999888866 34 789999999988775 4566655443332221 1 11111
Q ss_pred --hhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 381 --ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 381 --~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
.+......++.++..+-+.|+|+|.+.++...|+..... .--..+++..+...|..
T Consensus 397 ~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~----~~~anliqaqRd~FGaH 454 (470)
T PTZ00142 397 NDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQ----NLPANLVQAQRDYFGAH 454 (470)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----CccHHHHHHHHHHhCCC
Confidence 233444556788999999999999999999966654432 12345888888777753
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.01 Score=66.68 Aligned_cols=69 Identities=19% Similarity=0.385 Sum_probs=50.0
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCChh--HH----HHHHhc------CCcccCCHHHHhccC
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVYRP--TL----TKFQNV------GGLIANSPAEAAKDV 203 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~----~~l~~~------G~~~~~s~~e~~~~a 203 (988)
++++||+|||+ |.+|..+|..|...|. ++.++|++++ ++ .++... ...+..+..+.+++|
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~da 81 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDA 81 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCC
Confidence 45679999998 9999999999988663 7999999543 22 222221 223445666788999
Q ss_pred cEEEEEcCC
Q 001973 204 GVLVIMVTN 212 (988)
Q Consensus 204 DvV~l~vp~ 212 (988)
|+|+++-..
T Consensus 82 DiVVitaG~ 90 (326)
T PRK05442 82 DVALLVGAR 90 (326)
T ss_pred CEEEEeCCC
Confidence 999998754
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.01 Score=64.75 Aligned_cols=75 Identities=20% Similarity=0.191 Sum_probs=62.1
Q ss_pred CCCeEEEEccchH-HHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGAM-GFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|.|||.|.. |.+++..|.+.|..|++++.. +.++.+.++++|+|+++++.+..+.
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~i~------ 216 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNVLT------ 216 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCccC------
Confidence 3479999999999 999999999999999998642 3567788999999999999765221
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.++.
T Consensus 217 ---~~~ik~gavVIDVGin 232 (285)
T PRK14189 217 ---ADMVKPGATVIDVGMN 232 (285)
T ss_pred ---HHHcCCCCEEEEcccc
Confidence 2567899999998865
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.029 Score=58.74 Aligned_cols=71 Identities=17% Similarity=0.111 Sum_probs=52.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh-hHHHHHHhcC-CcccC-C-HHHHhccCcEEEEEcCChHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR-PTLTKFQNVG-GLIAN-S-PAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~G-~~~~~-s-~~e~~~~aDvV~l~vp~~~~ 215 (988)
+.++|-|||.|.+|...++.|.+.|++|++++++. +.+..+...+ +.... . ..+.+.++|+||.|+.++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~el 83 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRV 83 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHH
Confidence 34699999999999999999999999999998764 2344554443 22211 1 12346789999999988763
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.014 Score=65.33 Aligned_cols=120 Identities=11% Similarity=0.034 Sum_probs=67.9
Q ss_pred cHHHHHHHHHHHHhhCcCCCCCchhHHHHH-H--hhhc--ccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHH
Q 001973 84 PLLAVAHQQLILGLSHAHANDDNPPLVKVW-E--NVLG--VNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMG 158 (988)
Q Consensus 84 p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~-~--~~~g--~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG 158 (988)
-+...+++.|..|.+.|.-+.....+++.- . ++.. ..+.....--.+......++. ..-...+|-|||+|.||
T Consensus 109 QIlGQVK~Ay~~A~~~g~~g~~L~~lf~~A~~~aKrVRteT~I~~~~vSv~s~av~~~~~~--~~l~~k~vLvIGaGem~ 186 (338)
T PRK00676 109 EIQGQVKRAYLKAARERKLPFALHFLFQKALKEGKVFRSKGGAPYAEVTIESVVQQELRRR--QKSKKASLLFIGYSEIN 186 (338)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHHHh--CCccCCEEEEEcccHHH
Confidence 477888999999998876655544444321 0 1111 111111100011111112111 11235699999999999
Q ss_pred HHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEc
Q 001973 159 FGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 159 ~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~v 210 (988)
...+++|.++|. +|++.||+.+.. .+.... ....+....+|+||+|.
T Consensus 187 ~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~----~~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 187 RKVAYYLQRQGYSRITFCSRQQLTL-PYRTVV----REELSFQDPYDVIFFGS 234 (338)
T ss_pred HHHHHHHHHcCCCEEEEEcCCcccc-chhhhh----hhhhhcccCCCEEEEcC
Confidence 999999999995 699999997531 111100 01113346889999873
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.012 Score=68.98 Aligned_cols=105 Identities=18% Similarity=0.243 Sum_probs=65.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhC--------C--Ce-EEEEeCChhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS--------N--FT-VIGYDVYRPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~--------G--~~-V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~ 212 (988)
++|||+||+|.||..++..|.++ | .+ +.++|+++++...+...+...++++.++++ +.|+|+.|++.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGG 82 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCC
Confidence 46999999999999999888654 3 34 556799887754332234456788999886 46999999876
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecCC-CCHHHHHHHHHHHHh
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSST-VSPGFVSQLERRLQF 256 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~st-~~p~~~~~l~~~l~~ 256 (988)
........ ...+..|+-||.... .......++.+...+
T Consensus 83 ~~~~~~~~------~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~ 121 (426)
T PRK06349 83 IEPARELI------LKALEAGKHVVTANKALLAVHGAELFAAAEE 121 (426)
T ss_pred chHHHHHH------HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHH
Confidence 43222222 344556766663321 112334455544444
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.011 Score=60.57 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=51.0
Q ss_pred EEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------cCCHHHHhccCcEEEEEcCC
Q 001973 149 VGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 149 IgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~vp~ 212 (988)
|.|+|. |.+|..+++.|.+.||+|++.-|++++.+. ..++++ .++..++++++|.||.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 679995 999999999999999999999999998887 444332 12446678899999999975
|
... |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.86 Score=51.50 Aligned_cols=266 Identities=19% Similarity=0.124 Sum_probs=154.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc----CC---------------------cccCCHHHHh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV----GG---------------------LIANSPAEAA 200 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~----G~---------------------~~~~s~~e~~ 200 (988)
.+|-|+|.|..+-.+|..|.+.+. .|=+.+|...+.+.+-+. +- .+..+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 489999999999999999998875 699999987776654331 10 1345777888
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhh-hCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCC
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVS-ALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGE 279 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~-~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~ 279 (988)
.+=|.+|+|||.++ -.+|+ +++-. .|..=+.+|-.|..- +...-+...+...+.++.+++-.---|.....++.
T Consensus 82 g~WdtlILavtaDA-Y~~VL---~ql~~~~L~~vk~iVLvSPtf-GS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 82 GEWDTLILAVTADA-YLDVL---QQLPWEVLKRVKSIVLVSPTF-GSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred ccccEEEEEechHH-HHHHH---HhcCHHHHhhCCEEEEECccc-chHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 88899999999876 44555 23322 222223344444321 23334455555544455555432111111111110
Q ss_pred -----------eEEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHH--------------------------
Q 001973 280 -----------LTIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVK-------------------------- 319 (988)
Q Consensus 280 -----------l~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~K-------------------------- 319 (988)
-.+.+| ++.....++..+++.+|-.+..+ +.+=.|+.--
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~-~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~ 235 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVM-DNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVP 235 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEe-CChHhhhhcccceecCChHhhChhhHHHHhCCCCCc
Confidence 114444 24567788889999888665553 3332222211
Q ss_pred -----H-----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-C------Ccccccccc--c-----------
Q 001973 320 -----M-----ANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG-G------SSWMFENRV--P----------- 369 (988)
Q Consensus 320 -----l-----~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~-~------~s~~~~~~~--~----------- 369 (988)
+ +.-.+..-|...+.|++++.+++|+++=.+++.++... . +....+++. +
T Consensus 236 kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVR 315 (429)
T PF10100_consen 236 KYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVR 315 (429)
T ss_pred ceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHH
Confidence 0 11122225667789999999999999888888777631 0 000001100 0
Q ss_pred --ccc---------CCCCCCCch----------------hh----HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 370 --HML---------DNDYTPYSA----------------LD----IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 370 --~~~---------~~~~~~~~~----------------l~----~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
.++ .|.|- .|+ +. +=..-+.++..+|+.+|+++|.++...+.|+....
T Consensus 316 YtsiLIDPFS~PD~~GrYF-DFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~ 394 (429)
T PF10100_consen 316 YTSILIDPFSEPDEQGRYF-DFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLS 394 (429)
T ss_pred hhhheeCCCCCCCCCCCcc-cccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 000 01100 011 11 11233568899999999999999999999998766
Q ss_pred c
Q 001973 419 A 419 (988)
Q Consensus 419 ~ 419 (988)
+
T Consensus 395 ~ 395 (429)
T PF10100_consen 395 Q 395 (429)
T ss_pred H
Confidence 4
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.051 Score=59.89 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=82.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHh---CCCe-EEEEeCChhHHHHHHhc-CC---cccCCHHHHhccC--cEEEEEcCChH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR---SNFT-VIGYDVYRPTLTKFQNV-GG---LIANSPAEAAKDV--GVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~---~G~~-V~v~dr~~~~~~~l~~~-G~---~~~~s~~e~~~~a--DvV~l~vp~~~ 214 (988)
...|+||+|+|.|+.-.++.|.. .+|+ |-++|++.+++.++.+. ++ ++..|.+|++++. |+|.+..|+++
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~q 84 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQ 84 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCcc
Confidence 34699999999999999999974 4677 45569999999888765 33 5688999999865 99999999998
Q ss_pred HHHHHHccccchhhhCCCCCEEEec-CCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILS-STVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~-st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
..+-+.. ++ .....+++.. -......++++.+..+. +|+.+.++
T Consensus 85 H~evv~l----~l--~~~K~VL~EKPla~n~~e~~~iveaA~~--rgv~~meg 129 (351)
T KOG2741|consen 85 HYEVVML----AL--NKGKHVLCEKPLAMNVAEAEEIVEAAEA--RGVFFMEG 129 (351)
T ss_pred HHHHHHH----HH--HcCCcEEecccccCCHHHHHHHHHHHHH--cCcEEEee
Confidence 7776641 11 2233455554 24456777788777766 45655554
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.011 Score=69.99 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=43.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~ 191 (988)
..||.|+|+|.+|...+..+...|.+|+++|+++++.+...+.|+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 4599999999999999999999999999999999999999988876
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.033 Score=63.51 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=69.5
Q ss_pred CeEEEEccchHHH-HHHHHHHh--CCCeE-EEEeCChhHHHHHHhcC-CcccCCHHHHhc--cCcEEEEEcCChHHHHHH
Q 001973 147 TRVGFIGLGAMGF-GMATHLLR--SNFTV-IGYDVYRPTLTKFQNVG-GLIANSPAEAAK--DVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 147 ~kIgiIG~G~mG~-~lA~~L~~--~G~~V-~v~dr~~~~~~~l~~~G-~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~v 219 (988)
.||||||+|.++. ..+..+.. .+++| .++|+++++.+...+.+ ....+|.+++++ +.|+|++|+|+....+.+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~ 81 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 81 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence 5899999999775 33454533 35675 46899987653333333 567789999986 579999999998766655
Q ss_pred HccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 220 LYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 220 l~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
. ..+..| ++++..- +.....++++.+...+
T Consensus 82 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 113 (344)
T PRK10206 82 K-------RALEAGKNVLVEKPFTPTLAEAKELFALAKS 113 (344)
T ss_pred H-------HHHHcCCcEEEecCCcCCHHHHHHHHHHHHH
Confidence 4 223334 5666542 4456778888777665
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0072 Score=70.61 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=50.5
Q ss_pred CeEEEEccchHHHHHHH--HHH----hCCCeEEEEeCChhHHHHHHh--------cC----CcccCCHHHHhccCcEEEE
Q 001973 147 TRVGFIGLGAMGFGMAT--HLL----RSNFTVIGYDVYRPTLTKFQN--------VG----GLIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~--~L~----~~G~~V~v~dr~~~~~~~l~~--------~G----~~~~~s~~e~~~~aDvV~l 208 (988)
+||+|||.|.||...+. .++ -.+++|+++|+++++.+.... .+ +..+++..+++++||+||+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 69999999999977665 444 245799999999988763221 12 2346788899999999999
Q ss_pred EcCCh
Q 001973 209 MVTNE 213 (988)
Q Consensus 209 ~vp~~ 213 (988)
+.-..
T Consensus 82 ti~vg 86 (431)
T PRK15076 82 AIQVG 86 (431)
T ss_pred eeeeC
Confidence 98764
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0085 Score=59.90 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=52.0
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----CCcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----GGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+ |..|+.|+.-..+.||+|+..-||++++..+... .+--.++..+.+..-|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 69999995 9999999999999999999999999998664211 1111234457778899999887544
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.01 Score=68.03 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhC-CCeEEEEeCChhHHHHHHhcC-------CcccCCHH-HHhccCcEEEEEcCChHH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRS-NFTVIGYDVYRPTLTKFQNVG-------GLIANSPA-EAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~G-------~~~~~s~~-e~~~~aDvV~l~vp~~~~ 215 (988)
++||+|+|+ |+.|..+.+.|.++ .++|+.+.++++.-+.+.... .....+.+ +.++++|+||+|+|+..
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~- 116 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT- 116 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH-
Confidence 369999997 99999999999998 678998877654433332221 11111222 22478999999999864
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
..++. +.+..|..|||+|+..
T Consensus 117 s~~i~-------~~~~~g~~VIDlSs~f 137 (381)
T PLN02968 117 TQEII-------KALPKDLKIVDLSADF 137 (381)
T ss_pred HHHHH-------HHHhCCCEEEEcCchh
Confidence 33332 3344689999999753
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.031 Score=62.79 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=50.1
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCCh--hHHH----HHHhc------CCcccCCHHHHhccCc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVYR--PTLT----KFQNV------GGLIANSPAEAAKDVG 204 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~----~l~~~------G~~~~~s~~e~~~~aD 204 (988)
+..||+|||+ |.+|+.+|..|...|. ++.++|+++ ++++ ++.+. +..+..+..+.+++||
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 81 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVD 81 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCC
Confidence 3469999998 9999999999998884 799999954 2222 22221 1233345667889999
Q ss_pred EEEEEcCCh
Q 001973 205 VLVIMVTNE 213 (988)
Q Consensus 205 vV~l~vp~~ 213 (988)
+|+++-..+
T Consensus 82 vVVitAG~~ 90 (323)
T TIGR01759 82 AALLVGAFP 90 (323)
T ss_pred EEEEeCCCC
Confidence 999987653
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.022 Score=64.58 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=48.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHH----Hhc----C-Cccc--CCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKF----QNV----G-GLIA--NSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l----~~~----G-~~~~--~s~~e~~~~aDvV~l~vp~ 212 (988)
+||+|||+|.+|..+|..|+..|. ++.++|+++++++.. ... + ..+. .+.++ +++||+|+++...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG~ 115 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAGA 115 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCCC
Confidence 699999999999999999998885 799999988765432 221 1 2222 34444 8899999998654
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.036 Score=54.51 Aligned_cols=113 Identities=23% Similarity=0.237 Sum_probs=67.7
Q ss_pred eEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChHHH
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEAQA 216 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~~~ 216 (988)
||.|||+|.+|+.++.+|++.|. +++++|.+.-....+... |...++...+.++ ..++-+.+.+.....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 58999999999999999999997 699999875444444332 2222222222221 113333333321111
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSG 270 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g 270 (988)
. .....+.+.++||+++.. +.....+.+.+.+ .+..|+++-..+
T Consensus 81 ~-------~~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~--~~i~~i~~~~~g 124 (143)
T cd01483 81 D-------NLDDFLDGVDLVIDAIDN-IAVRRALNRACKE--LGIPVIDAGGLG 124 (143)
T ss_pred h-------hHHHHhcCCCEEEECCCC-HHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 1 112334567888888776 5556667777766 567777766544
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0099 Score=67.04 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=55.2
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeE---EEEeCChhHHH-HHHhcC--CcccC-CHHHHhccCcEEEEEcCChHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTV---IGYDVYRPTLT-KFQNVG--GLIAN-SPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V---~v~dr~~~~~~-~l~~~G--~~~~~-s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
+|+||+|+|+ |+.|..+.+.|.+++|++ ... .+.+... .+.-.| ..+.. +..+ ++++|++|+|+|....
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~~s- 79 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAAVS- 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHHHH-
Confidence 3479999996 999999999999877753 233 3332221 111112 22221 2223 5789999999997543
Q ss_pred HHHHccccchhhhCCCCCEEEecCCC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
..+. ..+ ...|..+||.|+-
T Consensus 80 ~~~v---~~~---~~~G~~VIDlS~~ 99 (336)
T PRK05671 80 RSFA---EKA---RAAGCSVIDLSGA 99 (336)
T ss_pred HHHH---HHH---HHCCCeEEECchh
Confidence 3333 122 2468899999975
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.02 Score=57.17 Aligned_cols=75 Identities=19% Similarity=0.163 Sum_probs=54.6
Q ss_pred CCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+++.|||-+. +|.+++..|.++|..|++.+.+ +.++++.++++|+||++++.+..++
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~--------------T~~l~~~~~~ADIVVsa~G~~~~i~------- 94 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK--------------TKNLQEITRRADIVVSAVGKPNLIK------- 94 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT--------------SSSHHHHHTTSSEEEE-SSSTT-B--------
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC--------------CCcccceeeeccEEeeeeccccccc-------
Confidence 35899999995 9999999999999999998765 3567788899999999999876322
Q ss_pred chhhhCCCCCEEEecCCCC
Q 001973 225 GAVSALSSGASIILSSTVS 243 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~ 243 (988)
..++++|.++||++...
T Consensus 95 --~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 95 --ADWIKPGAVVIDVGINY 111 (160)
T ss_dssp --GGGS-TTEEEEE--CEE
T ss_pred --cccccCCcEEEecCCcc
Confidence 23578999999988764
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.015 Score=63.21 Aligned_cols=96 Identities=22% Similarity=0.194 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hcCCCccccccccccccCCCCCCCchhhHHHH---
Q 001973 315 GSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLFNIIT---DSGGSSWMFENRVPHMLDNDYTPYSALDIFVK--- 387 (988)
Q Consensus 315 a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~~~l~---~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~k--- 387 (988)
|+.+||++|.....++++++|+..+.++ .|++.+++.+++. .+...|++++.....+...+..+.+-++....
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~ 80 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG 80 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence 5789999999999999999999999985 6888877766665 45567777665444333333222232322211
Q ss_pred ---HHHHHHHHHHhCCCCchHHHHHH
Q 001973 388 ---DMGIIARECLSQRVPLHISTIAH 410 (988)
Q Consensus 388 ---Dl~~~~~~a~~~gi~~pi~~a~~ 410 (988)
.-++....|-+.|+|+|++.+++
T Consensus 81 ~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 81 QKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp -BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred CCCccchHHHHHHHhCCCccHHHHHH
Confidence 12478899999999999876543
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.017 Score=63.75 Aligned_cols=67 Identities=16% Similarity=0.083 Sum_probs=51.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-C----CcccC---CHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-G----GLIAN---SPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G----~~~~~---s~~e~~~~aDvV~l~vp~~ 213 (988)
.++.|||+|-+|.+++..|++.|. +|+++||+.++.+.+.+. + +.... +..+...++|+||-|+|..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 479999999999999999999996 699999999999888653 1 11111 2224456788888888764
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.036 Score=59.12 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=61.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC---eEEEEeCC----hhHH-------HHHHhc-CC-cccCCHHHHhccCcEEEEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF---TVIGYDVY----RPTL-------TKFQNV-GG-LIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~---~V~v~dr~----~~~~-------~~l~~~-G~-~~~~s~~e~~~~aDvV~l~ 209 (988)
.+||.|+|+|.+|.+++..|.+.|. +|+++||+ .++. ..+.+. +. ....++.++++++|++|-+
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIga 104 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGV 104 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeC
Confidence 3589999999999999999999996 59999999 4442 223222 11 1113677888899999999
Q ss_pred cCChHHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
+|.....+ ...+.+.++.+|.+.++
T Consensus 105 T~~G~~~~-------~~l~~m~~~~ivf~lsn 129 (226)
T cd05311 105 SRPGVVKK-------EMIKKMAKDPIVFALAN 129 (226)
T ss_pred CCCCCCCH-------HHHHhhCCCCEEEEeCC
Confidence 87332112 23344557778888883
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.06 Score=63.12 Aligned_cols=67 Identities=24% Similarity=0.271 Sum_probs=47.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
.+|.|||+|.+|.++|..|.+.|++|+++|+++..........-....+......++|++|.+.+.+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 5899999999999999999999999999998876443211100011223344457799988887544
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.026 Score=65.23 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=67.1
Q ss_pred CeEEEEccchHHH-HHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc---c---------------c--CCHHH---Hhcc
Q 001973 147 TRVGFIGLGAMGF-GMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL---I---------------A--NSPAE---AAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~-~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~---~---------------~--~s~~e---~~~~ 202 (988)
|||.++|+|+||+ .++..|.+.|++|++.|++++.++.+++.|.. . . .+.++ .+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 5899999999998 55888999999999999999999999988631 0 0 12122 3347
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCC-------CCCEEEecCCCCHHHHHHHHHHHH
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALS-------SGASIILSSTVSPGFVSQLERRLQ 255 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~-------~g~ivId~st~~p~~~~~l~~~l~ 255 (988)
+|+|.+++.... .+.+. ..+.+.|. .+.+.|-++-..+.....+.+.+.
T Consensus 81 ~dlvt~~v~~~~-~~s~~---~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~V~ 136 (381)
T PRK02318 81 ADLVTTAVGPNI-LPFIA---PLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKHVL 136 (381)
T ss_pred CCEEEeCCCccc-chhHH---HHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHHHH
Confidence 899988887543 23322 12222221 222334444445666666665543
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.061 Score=66.14 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=60.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc----cCCHH---H-HhccCcEEEEEcCChHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI----ANSPA---E-AAKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~----~~s~~---e-~~~~aDvV~l~vp~~~~~~ 217 (988)
..+|-|+|.|.+|..+++.|.++|+++++.|.|+++++.+++.|..+ .++++ + -++++|.++++++++..-.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 35899999999999999999999999999999999999999887643 22332 1 1458999999999977555
Q ss_pred HHH
Q 001973 218 SVL 220 (988)
Q Consensus 218 ~vl 220 (988)
.+.
T Consensus 480 ~i~ 482 (621)
T PRK03562 480 QLV 482 (621)
T ss_pred HHH
Confidence 554
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.031 Score=61.01 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=62.2
Q ss_pred CCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||-|. +|.++|..|.+.|..|++++.. +.++.+.++++|+||.+++.+..+.
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~------- 217 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIP------- 217 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCccccc-------
Confidence 47999999999 9999999999999999999764 3467888999999999997766322
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 218 --~~~vk~gavVIDvGin 233 (285)
T PRK10792 218 --GEWIKPGAIVIDVGIN 233 (285)
T ss_pred --HHHcCCCcEEEEcccc
Confidence 2457899999998865
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.031 Score=62.77 Aligned_cols=67 Identities=16% Similarity=0.317 Sum_probs=49.1
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCChhH--H----HHHHhc------CCcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVYRPT--L----TKFQNV------GGLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~----~~l~~~------G~~~~~s~~e~~~~aDvV 206 (988)
+||+|||+ |.+|..+|..|+..|. ++.++|++.+. + .++... ...+..+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 59999999 9999999999998875 79999995432 2 122221 123345566788999999
Q ss_pred EEEcCCh
Q 001973 207 VIMVTNE 213 (988)
Q Consensus 207 ~l~vp~~ 213 (988)
|++-..+
T Consensus 83 vitaG~~ 89 (322)
T cd01338 83 LLVGAKP 89 (322)
T ss_pred EEeCCCC
Confidence 9987653
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.037 Score=62.01 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=48.3
Q ss_pred CeEEEEcc-chHHHHHHHHHHh---CCCeEEEEeCChhHH---HHHHhcC--Ccc----cCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLR---SNFTVIGYDVYRPTL---TKFQNVG--GLI----ANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~---~G~~V~v~dr~~~~~---~~l~~~G--~~~----~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+ |.+|.+++..|.. .++++.++|+++... -++.+.+ ..+ .+++.+.++++|+||+|...+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 59999999 9999999988854 347899999985431 1333312 111 346567788999999998753
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.02 Score=54.22 Aligned_cols=102 Identities=15% Similarity=0.222 Sum_probs=64.7
Q ss_pred CeEEEEc----cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIG----LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG----~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
++|+||| -+.+|..+..+|.++|++|+..+.....+ .|.....++.|.-...|++++++|... +.+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~~-~~~~v-- 72 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPDK-VPEIV-- 72 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HHH-HHHHH--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHHH-HHHHH--
Confidence 3799999 79999999999999999999998765433 267778888884478999999999765 44444
Q ss_pred ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 223 DLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
+++.. +..+.+|+..++ ..+++.+.+.+ .|+.++
T Consensus 73 -~~~~~-~g~~~v~~~~g~----~~~~~~~~a~~--~gi~vi 106 (116)
T PF13380_consen 73 -DEAAA-LGVKAVWLQPGA----ESEELIEAARE--AGIRVI 106 (116)
T ss_dssp -HHHHH-HT-SEEEE-TTS------HHHHHHHHH--TT-EEE
T ss_pred -HHHHH-cCCCEEEEEcch----HHHHHHHHHHH--cCCEEE
Confidence 33333 234566666663 33444444444 466665
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.031 Score=61.79 Aligned_cols=91 Identities=20% Similarity=0.232 Sum_probs=59.4
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-----CC---cc-cCCHHHH-hccCcEEEEEcCCh
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-----GG---LI-ANSPAEA-AKDVGVLVIMVTNE 213 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-----G~---~~-~~s~~e~-~~~aDvV~l~vp~~ 213 (988)
|+||+||| .|+-|..+.+.|..+.+ ++..+..+..+-+.+.+. |. .+ ..++++. .++||+||+|+|+.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg 81 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHG 81 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCch
Confidence 47999997 59999999999998764 666665444322333321 21 11 1233333 44699999999998
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
...+-+- ..+.+|..|||+|+-.
T Consensus 82 ~s~~~v~-------~l~~~g~~VIDLSadf 104 (349)
T COG0002 82 VSAELVP-------ELLEAGCKVIDLSADF 104 (349)
T ss_pred hHHHHHH-------HHHhCCCeEEECCccc
Confidence 8655543 2234577799999854
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.023 Score=63.89 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=50.6
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------cCCHHHHhccCcEEEEEcC
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~vp 211 (988)
|||.|.| .|.+|+.++..|.++||+|++.+|++++...+...|+.+ .+++.++++++|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4899999 599999999999999999999999987766555545432 1234566778888887654
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.026 Score=63.44 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=64.3
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhC-C-CeEEEEeCChhHHHHHHhcC-CcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRS-N-FTVIGYDVYRPTLTKFQNVG-GLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~G-~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
..++|.|+|+ |.||+.+++.|+.+ | .++++++|+.++...+..+- .....++.+++.++|+|+.+...+..+ ++
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~--~I 231 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGV--EI 231 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCC--cC
Confidence 3468999998 89999999999854 5 68999999998888776541 112235778888999999888654421 11
Q ss_pred ccccchhhhCCCCCEEEecC
Q 001973 221 YGDLGAVSALSSGASIILSS 240 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~s 240 (988)
. ...+.++.++||.+
T Consensus 232 -~----~~~l~~~~~viDiA 246 (340)
T PRK14982 232 -D----PETLKKPCLMIDGG 246 (340)
T ss_pred -C----HHHhCCCeEEEEec
Confidence 0 12346778888876
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.032 Score=61.32 Aligned_cols=75 Identities=21% Similarity=0.190 Sum_probs=59.2
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||.|. +|.+++..|.+.|.+|+++++. +.++.+.++++|+||.+++.+.- +
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~--------------t~~L~~~~~~aDIvI~AtG~~~~----v--- 216 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR--------------TQNLPELVKQADIIVGAVGKPEL----I--- 216 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC--------------chhHHHHhccCCEEEEccCCCCc----C---
Confidence 346999999998 9999999999999999999973 23455666899999999975441 2
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
. .+.+++|.+++|....
T Consensus 217 ~--~~~lk~gavViDvg~n 233 (283)
T PRK14192 217 K--KDWIKQGAVVVDAGFH 233 (283)
T ss_pred C--HHHcCCCCEEEEEEEe
Confidence 1 2457889999998754
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.073 Score=63.05 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=50.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh-hHH----HHHHhcCCcc--cCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR-PTL----TKFQNVGGLI--ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~-~~~----~~l~~~G~~~--~~s~~e~~~~aDvV~l~vp~ 212 (988)
.++|.|+|.|.+|.++|..|++.|++|+++|++. +.. +++.+.|+.+ .+...+....+|+||.+...
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 4689999999999999999999999999999985 333 3444446543 23334556789999987654
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.048 Score=63.44 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=52.3
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhC-------CC--eEEEEeCChhHHHHHH----hc------CCcccCCHHHHhccCcE
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRS-------NF--TVIGYDVYRPTLTKFQ----NV------GGLIANSPAEAAKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~-------G~--~V~v~dr~~~~~~~l~----~~------G~~~~~s~~e~~~~aDv 205 (988)
..||+|||+ |.+|..+|..|+.. |. ++.++|++.++++-.. .. .+.+..+.-+.+++||+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 469999999 99999999999987 64 7999999988765422 11 23334556678899999
Q ss_pred EEEEcCCh
Q 001973 206 LVIMVTNE 213 (988)
Q Consensus 206 V~l~vp~~ 213 (988)
||++-..+
T Consensus 180 VVitAG~p 187 (444)
T PLN00112 180 ALLIGAKP 187 (444)
T ss_pred EEECCCCC
Confidence 99987654
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.11 Score=54.49 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=72.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh-HHHHHHhcC-Cccc--CCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP-TLTKFQNVG-GLIA--NSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~G-~~~~--~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
..+|.|||.|.+|..-++.|.+.|.+|++++.+.. ....+.+.| +... +-..+.+.++++||.++.++..-..+..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~i~~ 88 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNRRVAH 88 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHHHHHH
Confidence 46999999999999999999999999999987653 445555544 2221 1113456789999999888743222220
Q ss_pred ------------cccc----hhh-hCCCCCEEEecCC--CCHHHHHHHHHHHHh
Q 001973 222 ------------GDLG----AVS-ALSSGASIILSST--VSPGFVSQLERRLQF 256 (988)
Q Consensus 222 ------------~~~~----i~~-~l~~g~ivId~st--~~p~~~~~l~~~l~~ 256 (988)
+..+ +.+ ....|.+.|-.|| .+|..++.+.+.+.+
T Consensus 89 ~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~ 142 (205)
T TIGR01470 89 AARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIET 142 (205)
T ss_pred HHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 0000 111 1234566665554 478888888777765
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.069 Score=53.47 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=67.6
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC-Cccc-CCH-HHHhccCcEEEEEcCChHHHHHHHc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG-GLIA-NSP-AEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G-~~~~-~s~-~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+.++|.|||.|.+|...++.|.+.|++|++++ ++..+++.+.+ +... ..+ ++-++++|+||.++.++..-..+..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i~~ 89 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMVKQ 89 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHHHHH
Confidence 35799999999999999999999999999996 44444444432 1111 111 1235789999999887762222210
Q ss_pred cccc---------------hhh-hCCCCCEEEecCC--CCHHHHHHHHHHHHh
Q 001973 222 GDLG---------------AVS-ALSSGASIILSST--VSPGFVSQLERRLQF 256 (988)
Q Consensus 222 ~~~~---------------i~~-~l~~g~ivId~st--~~p~~~~~l~~~l~~ 256 (988)
..+. ..+ ....+.+.|-.|| .+|..++.+.+.+.+
T Consensus 90 ~a~~~~~vn~~d~~~~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~~ie~ 142 (157)
T PRK06719 90 AAHDFQWVNVVSDGTESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQELTS 142 (157)
T ss_pred HHHHCCcEEECCCCCcCcEEeeeEEEECCeEEEEECCCcChHHHHHHHHHHHH
Confidence 0000 011 1234455555544 578888888777765
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.063 Score=56.22 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRP 180 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~ 180 (988)
..||.|||+|.+|+.++.+|++.|. +++++|.+.-
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 4689999999999999999999996 8999998843
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.3 Score=51.64 Aligned_cols=171 Identities=18% Similarity=0.183 Sum_probs=94.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh----------hHHHHHHhcCC-cccC-----CHHHH-hccCcEEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR----------PTLTKFQNVGG-LIAN-----SPAEA-AKDVGVLV 207 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~----------~~~~~l~~~G~-~~~~-----s~~e~-~~~aDvV~ 207 (988)
.++|+|.|+|++|+.+|+.|.+.|. .|.+.|.+. +.++...+.+. .... +..+. ..+||+++
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVli 102 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFA 102 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEe
Confidence 3699999999999999999999988 577789887 66665554431 1111 11222 23899999
Q ss_pred EEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCC
Q 001973 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGT 287 (988)
Q Consensus 208 l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~ 287 (988)
-|.+......+. ...++ -++|+...+. |-+. +-.+.+.+ +|+.|+.-.+. ..|. ++++.
T Consensus 103 paA~~~~i~~~~-------a~~l~-a~~V~e~AN~-p~t~-~a~~~L~~--~Gi~v~Pd~~~------NaGG--vi~s~- 161 (217)
T cd05211 103 PCALGNVIDLEN-------AKKLK-AKVVAEGANN-PTTD-EALRILHE--RGIVVAPDIVA------NAGG--VIVSY- 161 (217)
T ss_pred eccccCccChhh-------HhhcC-ccEEEeCCCC-CCCH-HHHHHHHH--CCcEEEChHHh------cCCC--eEeEH-
Confidence 998765422222 22232 3455555443 3333 45566666 46555532211 1111 11111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 001973 288 EESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNII 354 (988)
Q Consensus 288 ~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l 354 (988)
++..+. .. ..++ .. +-+.+-+...+...+.+.+..+++.|+++.+....+
T Consensus 162 ---~E~~q~----~~-~~~w-----~~----~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 211 (217)
T cd05211 162 ---FEWVQN----LQ-RLSW-----DA----EEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANIL 211 (217)
T ss_pred ---HHhcCC----cc-ccCC-----CH----HHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 111110 00 0111 11 112333444556678889999999999988776554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.027 Score=62.57 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=54.3
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
++||+||| .|+.|..+.+.|.++.+ ++.....+..+ .. .+.++..+++|++|+|+|+....+-+-
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~~-~~~~~~~~~~DvvFlalp~~~s~~~~~--- 68 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------DA-AARRELLNAADVAILCLPDDAAREAVA--- 68 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------cc-cCchhhhcCCCEEEECCCHHHHHHHHH---
Confidence 36999999 89999999999998874 33333222211 11 233455678999999999876444332
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
.+ ...|..|||.|+.
T Consensus 69 -~~---~~~g~~VIDlSad 83 (313)
T PRK11863 69 -LI---DNPATRVIDASTA 83 (313)
T ss_pred -HH---HhCCCEEEECChh
Confidence 22 2468999999974
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.038 Score=60.27 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=60.6
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|.|||-| .+|.++|..|.+.|..|++++.. +.++.+.+++||+|+.+++.+.-+.
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~--------------t~~l~~~~~~ADIvV~AvG~p~~i~------ 215 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL--------------TKDLSFYTQNADIVCVGVGKPDLIK------ 215 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC--------------cHHHHHHHHhCCEEEEecCCCCcCC------
Confidence 34799999999 99999999999999999998643 2345678899999999998876322
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 216 ---~~~vk~GavVIDvGi~ 231 (285)
T PRK14191 216 ---ASMVKKGAVVVDIGIN 231 (285)
T ss_pred ---HHHcCCCcEEEEeecc
Confidence 2356899999998765
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.045 Score=59.77 Aligned_cols=74 Identities=22% Similarity=0.238 Sum_probs=61.3
Q ss_pred CCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+++.|||-+. +|.++|..|.+.|..|++++.. +.++.+.++++|+||.++.-+..+.
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvv~AvG~p~~i~------- 222 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------------TDDLKKYTLDADILVVATGVKHLIK------- 222 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------------CCCHHHHHhhCCEEEEccCCccccC-------
Confidence 47999999999 9999999999999999999843 3467788899999999998766322
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.++.
T Consensus 223 --~~~vk~gavVIDvGin 238 (287)
T PRK14176 223 --ADMVKEGAVIFDVGIT 238 (287)
T ss_pred --HHHcCCCcEEEEeccc
Confidence 2357789999998865
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.11 Score=61.55 Aligned_cols=64 Identities=13% Similarity=0.266 Sum_probs=50.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhcCCccc--CCHHHHhccCcEEEEEc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP-----TLTKFQNVGGLIA--NSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~G~~~~--~s~~e~~~~aDvV~l~v 210 (988)
+||+|+|+|..|.++|+.|.+.|++|+++|+++. ..+++.+.|+.+. ....+.+.++|+||.+.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 5899999999999999999999999999998752 2345777787553 22345567899998874
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.11 Score=61.58 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=64.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--CCcc-c---CCHH----HHhccCcEEEEEcCChHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--GGLI-A---NSPA----EAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--G~~~-~---~s~~----e~~~~aDvV~l~vp~~~~ 215 (988)
+++|-|+|+|.+|..+++.|.+.|++|++.|+++++.+.+.+. +... . ++.. ..++++|.|+++.+++..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~ 310 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDEA 310 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcHH
Confidence 5789999999999999999999999999999999999988775 3321 1 2222 124688999988887542
Q ss_pred HHHHHccccchhhhCCCCCEEEecCC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
-. .. ..+...+....+++-+.+
T Consensus 311 n~-~~---~~~~~~~~~~~ii~~~~~ 332 (453)
T PRK09496 311 NI-LS---SLLAKRLGAKKVIALVNR 332 (453)
T ss_pred HH-HH---HHHHHHhCCCeEEEEECC
Confidence 11 11 122344455566665544
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.069 Score=54.50 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=29.8
Q ss_pred eEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR 179 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~ 179 (988)
||.|||+|.+|+.++.+|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999997 599999886
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.032 Score=51.95 Aligned_cols=83 Identities=14% Similarity=0.089 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCChhHHHHHH---hcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCC
Q 001973 157 MGFGMATHLLRSNFTVIGYDVYRPTLTKFQ---NVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSG 233 (988)
Q Consensus 157 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~---~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g 233 (988)
-+..|+..|.+.|.+|.+||..-....... ..+...++++.++.+++|.|+++++.+.- +.+- .+++...+.++
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f-~~l~--~~~~~~~~~~~ 94 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEF-RELD--WEEIAKLMRKP 94 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGG-GCCG--HHHHHHHSCSS
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHH-hccC--HHHHHHhcCCC
Confidence 345688999999999999998766554444 25788889999999999999999998763 2211 13455667788
Q ss_pred CEEEecCCC
Q 001973 234 ASIILSSTV 242 (988)
Q Consensus 234 ~ivId~st~ 242 (988)
.+|+|+-++
T Consensus 95 ~~iiD~~~~ 103 (106)
T PF03720_consen 95 PVIIDGRNI 103 (106)
T ss_dssp EEEEESSST
T ss_pred CEEEECccc
Confidence 999998654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.08 Score=62.93 Aligned_cols=112 Identities=23% Similarity=0.325 Sum_probs=69.1
Q ss_pred CCCeEEEEccchHHHH-HHHHHHhCCCeEEEEeCChh-HHHHHHhcCCccc-CCHHHHhccCcEEEEEcCCh---HHHHH
Q 001973 145 SVTRVGFIGLGAMGFG-MATHLLRSNFTVIGYDVYRP-TLTKFQNVGGLIA-NSPAEAAKDVGVLVIMVTNE---AQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~G~~~~-~s~~e~~~~aDvV~l~vp~~---~~~~~ 218 (988)
..++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..++|.+.|+.+. ....+.+.++|+|+.+-.-+ ..++.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~ 85 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVA 85 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHH
Confidence 4468999999999999 89999999999999997643 3455766677653 22334566899888765322 22332
Q ss_pred HHc------cccchhhhC-CCCCEEEecCCC-CHHHHHHHHHHHHh
Q 001973 219 VLY------GDLGAVSAL-SSGASIILSSTV-SPGFVSQLERRLQF 256 (988)
Q Consensus 219 vl~------~~~~i~~~l-~~g~ivId~st~-~p~~~~~l~~~l~~ 256 (988)
... +.-+++..+ .+..+|..+.|. +..++.-+...+..
T Consensus 86 a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~ 131 (461)
T PRK00421 86 ARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAE 131 (461)
T ss_pred HHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 211 111232222 233455555544 44455555666665
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.048 Score=60.79 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=47.8
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCC--CeEEEEeCChhH--HHHHHhc--CCcc----c-CCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSN--FTVIGYDVYRPT--LTKFQNV--GGLI----A-NSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G--~~V~v~dr~~~~--~~~l~~~--G~~~----~-~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+ |.+|..+|..|+..| .++.++|++... +-+|... .... . +++.+.+++||+|+++...+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 59999999 999999999999888 479999987111 1123322 1111 1 23467889999999998654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.038 Score=61.66 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=47.6
Q ss_pred eEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc-------CCcccCCHHHHhccCcEEEEEcCC
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV-------GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~-------G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
||+|||+|.+|..+|..|+..+. ++.++|+++++++. |... ......+.-+.+++||+|+++...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 79999999999999999998885 79999998765432 3321 112222334678899999987654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.097 Score=59.94 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=49.2
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCC-------eEEEE--eCChhHHHHHHh----------cCCcccCCHHHHhccCcE
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNF-------TVIGY--DVYRPTLTKFQN----------VGGLIANSPAEAAKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~--dr~~~~~~~l~~----------~G~~~~~s~~e~~~~aDv 205 (988)
..||+|||+ |.+|..+|..|+..|. .+.++ |++.++++.... .++.+.++..+.+++||+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDI 123 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADW 123 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCE
Confidence 469999999 9999999999998773 34445 888777643221 123334556678899999
Q ss_pred EEEEcCCh
Q 001973 206 LVIMVTNE 213 (988)
Q Consensus 206 V~l~vp~~ 213 (988)
||++-..+
T Consensus 124 VVitAG~p 131 (387)
T TIGR01757 124 ALLIGAKP 131 (387)
T ss_pred EEECCCCC
Confidence 99986554
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.095 Score=59.58 Aligned_cols=106 Identities=23% Similarity=0.267 Sum_probs=61.1
Q ss_pred CeEEEEccchHHHHHHHHHHhC----------CCe-EEEEeC----------ChhHHHHHHhc-CC-c------ccCCHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS----------NFT-VIGYDV----------YRPTLTKFQNV-GG-L------IANSPA 197 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~----------G~~-V~v~dr----------~~~~~~~l~~~-G~-~------~~~s~~ 197 (988)
++|+|+|+|.||..+++.|.++ +.+ |-++|+ +.++...+.+. +. . ...++.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5999999999999999999865 345 445575 34444443332 21 1 134778
Q ss_pred HHhc--cCcEEEEEcCChHHH-HHHHccccchhhhCCCCCEEEecCCCCHH--HHHHHHHHHHh
Q 001973 198 EAAK--DVGVLVIMVTNEAQA-ESVLYGDLGAVSALSSGASIILSSTVSPG--FVSQLERRLQF 256 (988)
Q Consensus 198 e~~~--~aDvV~l~vp~~~~~-~~vl~~~~~i~~~l~~g~ivId~st~~p~--~~~~l~~~l~~ 256 (988)
++++ +.|+|+.|+|+.... +... +-+...+..|.-||..+. .|- ...++.+...+
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~---~~~~~aL~~GkhVVtaNK-~pla~~~~eL~~~A~~ 142 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPAL---SHCRKALERGKHVVTSNK-GPLALAYKELKELAKK 142 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHH---HHHHHHHHCCCEEEcCCc-HHHHhhHHHHHHHHHH
Confidence 8774 679999999864321 0001 112344556766664332 232 33455554444
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.054 Score=61.81 Aligned_cols=89 Identities=17% Similarity=0.265 Sum_probs=57.6
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHh---------------cCCccc-CCHHHHhccCcEEE
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQN---------------VGGLIA-NSPAEAAKDVGVLV 207 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~---------------~G~~~~-~s~~e~~~~aDvV~ 207 (988)
++||+|+| .|.+|..+.+.|.++.+ ++.++.++++...+... ....+. .++ +...++|+||
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~DvVf 81 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDDVDIVF 81 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcCCCEEE
Confidence 46999998 89999999999998764 88887666544322111 011121 233 3447899999
Q ss_pred EEcCChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 208 l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.|+|..... .+. +.+ ...|..+||.|..
T Consensus 82 ~a~p~~~s~-~~~---~~~---~~~G~~vIDls~~ 109 (349)
T PRK08664 82 SALPSDVAG-EVE---EEF---AKAGKPVFSNASA 109 (349)
T ss_pred EeCChhHHH-HHH---HHH---HHCCCEEEECCch
Confidence 999986532 222 111 2357889998864
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.032 Score=60.31 Aligned_cols=91 Identities=20% Similarity=0.236 Sum_probs=70.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCc------ccCCHHHHhccCcEEEEEcCCh--HHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGL------IANSPAEAAKDVGVLVIMVTNE--AQAE 217 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~------~~~s~~e~~~~aDvV~l~vp~~--~~~~ 217 (988)
-||.|||.|-+|+.-|+...-.|-+|++.|+|.+++..+-.. +.+ -...+++.+.++|++|-+|--+ ++-+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPk 248 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPK 248 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCce
Confidence 489999999999999999999999999999999998877653 322 1234678889999999876433 3222
Q ss_pred HHHccccchhhhCCCCCEEEecC
Q 001973 218 SVLYGDLGAVSALSSGASIILSS 240 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~s 240 (988)
-+. ++..+.++||.+|||..
T Consensus 249 Lvt---~e~vk~MkpGsVivDVA 268 (371)
T COG0686 249 LVT---REMVKQMKPGSVIVDVA 268 (371)
T ss_pred ehh---HHHHHhcCCCcEEEEEE
Confidence 232 46677899999999975
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.15 Score=60.24 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=49.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh----HHHHHHhcCCccc--CCHHHHhcc-CcEEEEEc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP----TLTKFQNVGGLIA--NSPAEAAKD-VGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~----~~~~l~~~G~~~~--~s~~e~~~~-aDvV~l~v 210 (988)
.++|.|+|.|.+|.++|+.|++.|++|+++|++.. ..+.+.+.|+.+. ....+...+ .|+|+.+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 35899999999999999999999999999998652 2355666676543 334454444 89887765
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.11 Score=58.59 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=47.8
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCC-------CeEEEEeCChhH--HHH----HHh------cCCcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSN-------FTVIGYDVYRPT--LTK----FQN------VGGLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G-------~~V~v~dr~~~~--~~~----l~~------~G~~~~~s~~e~~~~aDvV 206 (988)
.||+|+|+ |.+|+.++..|...+ .+|.++|+++.. .+. +.. .......++.+++++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 58999999 999999999999854 589999996531 221 111 0122345667888999999
Q ss_pred EEEcCC
Q 001973 207 VIMVTN 212 (988)
Q Consensus 207 ~l~vp~ 212 (988)
|++-..
T Consensus 83 I~tAG~ 88 (325)
T cd01336 83 ILVGAM 88 (325)
T ss_pred EEeCCc
Confidence 998654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.093 Score=58.88 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=48.8
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCC--eEEEEeCChhHH--HHHHhcC----Cc---ccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNF--TVIGYDVYRPTL--TKFQNVG----GL---IANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~G----~~---~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
.||+|||+ |.+|..+|..|+..+. ++.++|+++... -+|.... +. -.+++.++++++|+|+++...+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~ 97 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP 97 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence 59999999 9999999999997764 899999977211 1232211 11 2344578899999999987653
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.049 Score=61.24 Aligned_cols=66 Identities=24% Similarity=0.372 Sum_probs=48.4
Q ss_pred eEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCCh--hHHHH----HHhc------CCcccCCHHHHhccCcEEE
Q 001973 148 RVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVYR--PTLTK----FQNV------GGLIANSPAEAAKDVGVLV 207 (988)
Q Consensus 148 kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~----l~~~------G~~~~~s~~e~~~~aDvV~ 207 (988)
||+|||+ |.+|+.++..|+..|. ++.++|+++ +..+- +.+. +..+..+..+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 8999999 9999999999998662 599999987 44321 1111 1223356678899999999
Q ss_pred EEcCCh
Q 001973 208 IMVTNE 213 (988)
Q Consensus 208 l~vp~~ 213 (988)
++-..+
T Consensus 82 itAG~~ 87 (323)
T cd00704 82 LVGAFP 87 (323)
T ss_pred EeCCCC
Confidence 987554
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.11 Score=55.25 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=68.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEE-EEeC----------ChhHHHHHHhcCC--------cccCCHHHH-hccCcE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVI-GYDV----------YRPTLTKFQNVGG--------LIANSPAEA-AKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~G~--------~~~~s~~e~-~~~aDv 205 (988)
.++|+|.|+|++|..++..|.+.|.+|+ +.|. +.+.+.++.+..- ... ++.+. -.+||+
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dv 109 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDI 109 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccE
Confidence 3699999999999999999999999988 6677 6676666554321 111 12222 237899
Q ss_pred EEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 206 LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 206 V~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
++-|.+......+.. +.++ -++|+...+. |-+ .+..+.+.+ +|+.|+
T Consensus 110 lip~a~~~~i~~~~~-------~~l~-a~~I~egAN~-~~t-~~a~~~L~~--rGi~~~ 156 (227)
T cd01076 110 LIPAALENQITADNA-------DRIK-AKIIVEAANG-PTT-PEADEILHE--RGVLVV 156 (227)
T ss_pred EEecCccCccCHHHH-------hhce-eeEEEeCCCC-CCC-HHHHHHHHH--CCCEEE
Confidence 999987655333332 2232 3455555544 444 556667766 567666
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.066 Score=58.27 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=61.1
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+ .+|.++|..|.++|..|++++.. +.++.+.+++||+|+++++.+.-+.
T Consensus 156 ~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------------T~~l~~~~~~ADIvV~AvGkp~~i~------ 215 (281)
T PRK14183 156 KGKDVCVVGASNIVGKPMAALLLNANATVDICHIF--------------TKDLKAHTKKADIVIVGVGKPNLIT------ 215 (281)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CcCHHHHHhhCCEEEEecCcccccC------
Confidence 34699999999 89999999999999999988532 3456788999999999999876322
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.++.
T Consensus 216 ---~~~vk~gavvIDvGin 231 (281)
T PRK14183 216 ---EDMVKEGAIVIDIGIN 231 (281)
T ss_pred ---HHHcCCCcEEEEeecc
Confidence 2457799999998865
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.1 Score=57.80 Aligned_cols=67 Identities=21% Similarity=0.252 Sum_probs=47.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHH----HHhc------CCcccC-CHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTK----FQNV------GGLIAN-SPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~----l~~~------G~~~~~-s~~e~~~~aDvV~l~vp~~ 213 (988)
+||+|||.|.+|+++|..|...+ .++.+||+..++.+- |.+. ...... ..-+.++++|+|+++..-|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 48999999999999999998766 489999999554332 2221 112222 2246688999999998433
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.045 Score=61.99 Aligned_cols=89 Identities=20% Similarity=0.194 Sum_probs=58.0
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeE---EEEeCChhHHHHHHhcC--CcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTV---IGYDVYRPTLTKFQNVG--GLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~G--~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
+||+||| .|+.|..+.+.|.++||++ ....++.+.-+.+.-.| +.+.+...+.++++|+||+|+|.....+ +.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~-~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKK-YA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHH-HH
Confidence 6999997 5999999999999988853 66654443333332112 2222222234578999999999876433 32
Q ss_pred ccccchhhhCCCCCEEEecCCC
Q 001973 221 YGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~ 242 (988)
..++..|..|||.|+.
T Consensus 81 ------~~~~~~G~~VIDlS~~ 96 (334)
T PRK14874 81 ------PKAAAAGAVVIDNSSA 96 (334)
T ss_pred ------HHHHhCCCEEEECCch
Confidence 1234568899999974
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.065 Score=60.05 Aligned_cols=69 Identities=13% Similarity=0.220 Sum_probs=48.3
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCC--CeEEEEeCChhHH--HHHHhcC--Ccc--cCC---HHHHhccCcEEEEEcCC
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSN--FTVIGYDVYRPTL--TKFQNVG--GLI--ANS---PAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~--~~l~~~G--~~~--~~s---~~e~~~~aDvV~l~vp~ 212 (988)
+|.||+|||+ |.+|+.+|..|+..+ .++.++|++.... .++.+.. ..+ .++ ..+++++||+|+++...
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 3569999999 999999999999655 6899999943222 1233221 112 222 26788999999998866
Q ss_pred h
Q 001973 213 E 213 (988)
Q Consensus 213 ~ 213 (988)
+
T Consensus 87 ~ 87 (321)
T PTZ00325 87 P 87 (321)
T ss_pred C
Confidence 4
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.1 Score=57.19 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=102.9
Q ss_pred ccCCCCcchHHHHHHhHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHhhC---------------c---CCCCCchhH
Q 001973 53 LRGDAKLHFLNAFIQNLGIALDMAKTL-----AFPLPLLAVAHQQLILGLSH---------------A---HANDDNPPL 109 (988)
Q Consensus 53 ~~~~~~~f~l~l~~KDl~la~~~a~~~-----g~~~p~~~~~~~~~~~a~~~---------------G---~g~~D~~~~ 109 (988)
++..|.+|.+. ..|+..+++-.+.. .+.+|.=+.+.+++++..+. | .-+.|+..+
T Consensus 34 l~~~Y~a~~v~--~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~~~A~~iGAVNTl~~~~~g~l~G~NTD~~G~ 111 (283)
T COG0169 34 LDYVYLAFEVP--PEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELSPRARLIGAVNTLVREDDGKLRGYNTDGIGF 111 (283)
T ss_pred CCceEEEeecC--HHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCCHHHHHhCCceEEEEccCCEEEEEcCCHHHH
Confidence 44555555443 45555566555544 46689888888877654321 1 124566666
Q ss_pred HHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhc
Q 001973 110 VKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNV 188 (988)
Q Consensus 110 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~ 188 (988)
++.+++.... +. ....++.|+|.|-++.+++..|++.| .+|+++||+.++.++|.+.
T Consensus 112 ~~~L~~~~~~--------~~--------------~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~ 169 (283)
T COG0169 112 LRALKEFGLP--------VD--------------VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL 169 (283)
T ss_pred HHHHHhcCCC--------cc--------------cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 5555542110 00 01248999999999999999999999 5799999999999888754
Q ss_pred ----CC-cccCCHHHH--hccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHH
Q 001973 189 ----GG-LIANSPAEA--AKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 189 ----G~-~~~~s~~e~--~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~ 246 (988)
+. .......+. ..++|+||-++|-.-.-...- .+-. ...++++.++.|+=-.+..|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~-~~~~-~~~l~~~~~v~D~vY~P~~T 232 (283)
T COG0169 170 FGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEGD-SPVP-AELLPKGAIVYDVVYNPLET 232 (283)
T ss_pred hhhcccccccccccccccccccCEEEECCCCCCCCCCCC-CCCc-HHhcCcCCEEEEeccCCCCC
Confidence 21 111222221 226899999998765332100 0001 34577889999987665433
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.15 Score=60.91 Aligned_cols=67 Identities=16% Similarity=0.086 Sum_probs=53.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccC--CHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIAN--SPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~--s~~e~~~~aDvV~l~vp~~ 213 (988)
.+|.|+|+|..|.+.++.|...|++|+++|++++..+.+.+.|+.... ...+.++++|+||.+..-+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~ 81 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFR 81 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCC
Confidence 589999999999999999999999999999887777767777775532 2345567899999876433
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.11 Score=58.97 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~ 179 (988)
..+|.|||+|.+|+.+|..|++.|+ +++++|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3589999999999999999999997 799999885
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.15 Score=60.62 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=49.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~ 209 (988)
++|.|||+|..|.+.|..|.+.|++|+++|..+.....+.+.|+.......+.+.++|+|+.+
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 589999999999999999999999999999876655556666776533223345688988864
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.057 Score=57.70 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=52.3
Q ss_pred EEEEcc-chHHHHHHHHHHhCCCeEEEEeCChh--HHHHHHhcCCcc-------cCCHHHHhccCcEEEEEcCC
Q 001973 149 VGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRP--TLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 149 IgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~vp~ 212 (988)
|.|+|. |.+|..++..|.+.+|+|++.-|++. ..+.+.+.|+.+ .+++.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 789996 99999999999999999999999864 467788778753 23455678899999999884
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.13 Score=58.36 Aligned_cols=113 Identities=18% Similarity=0.082 Sum_probs=65.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCC----------cccCCHHHHhc--cCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGG----------LIANSPAEAAK--DVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~----------~~~~s~~e~~~--~aDvV~l~vp~ 212 (988)
..||.|||+|.+|+.+|.+|++.|. +++++|.+.-....|..+-. ..+....+.++ ..++-+.....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~ 103 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQ 103 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 3589999999999999999999998 89999998644444433211 11111112222 23443444332
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcc
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPV 268 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv 268 (988)
....+. +.+.+..-++||+++.. +.+...+.+.... .+..++.+.+
T Consensus 104 ~~~~~~-------~~~~~~~~DlVid~~Dn-~~~r~~ln~~~~~--~~iP~i~~~~ 149 (339)
T PRK07688 104 DVTAEE-------LEELVTGVDLIIDATDN-FETRFIVNDAAQK--YGIPWIYGAC 149 (339)
T ss_pred cCCHHH-------HHHHHcCCCEEEEcCCC-HHHHHHHHHHHHH--hCCCEEEEee
Confidence 111111 12223456888888765 5555566666555 4566665543
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.043 Score=61.77 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=56.0
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCC---eEEEEeCChhHHHH--HHhcCCcccCCHHHH-hccCcEEEEEcCChHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNF---TVIGYDVYRPTLTK--FQNVGGLIANSPAEA-AKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~--l~~~G~~~~~s~~e~-~~~aDvV~l~vp~~~~~~ 217 (988)
..++|+|||+ |+.|..+.+.|.++.| ++..+..+.+.-+. +......+. ++++. ..++|++|+|+|.....+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~~ 81 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREASAA 81 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHHHH
Confidence 4579999998 9999999999999544 45555322211111 111112222 33333 368999999999875333
Q ss_pred HHHccccchhhhCCCCCEEEecCCC
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
+. ..+ ...|..|||+|+.
T Consensus 82 -~~---~~~---~~~g~~VIDlS~~ 99 (336)
T PRK08040 82 -YA---EEA---TNAGCLVIDSSGL 99 (336)
T ss_pred -HH---HHH---HHCCCEEEECChH
Confidence 22 122 2468999999964
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.11 Score=60.44 Aligned_cols=111 Identities=17% Similarity=0.113 Sum_probs=67.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH----HHHHHhcCCcccC--CHHHHhccCcEEEEEcCCh---HHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT----LTKFQNVGGLIAN--SPAEAAKDVGVLVIMVTNE---AQA 216 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~----~~~l~~~G~~~~~--s~~e~~~~aDvV~l~vp~~---~~~ 216 (988)
.+||.|+|+|.-|.++++.|.+.|++|+++|.++.. ...+...++.+.. .+.+...++|+|+.+-.-+ ..+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v 86 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLV 86 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHH
Confidence 579999999999999999999999999999977655 2233344544322 1225567889998764322 223
Q ss_pred HHHHc-cc-----cchhhhC-CCCCEEEecCC-CCHHHHHHHHHHHHh
Q 001973 217 ESVLY-GD-----LGAVSAL-SSGASIILSST-VSPGFVSQLERRLQF 256 (988)
Q Consensus 217 ~~vl~-~~-----~~i~~~l-~~g~ivId~st-~~p~~~~~l~~~l~~ 256 (988)
+.... |. -++.-.. .+..+|..+.| ++..++.-++..+..
T Consensus 87 ~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~ 134 (448)
T COG0771 87 EAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKA 134 (448)
T ss_pred HHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHh
Confidence 33321 11 1112222 13335555544 444555556666665
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.056 Score=60.92 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=56.0
Q ss_pred CCeEEEEcc-chHHHHHHHHHHh-CCCe---EEEEeCC--hhHHHHHHhcCCccc-CCHHHHhccCcEEEEEcCChHHHH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLR-SNFT---VIGYDVY--RPTLTKFQNVGGLIA-NSPAEAAKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~-~G~~---V~v~dr~--~~~~~~l~~~G~~~~-~s~~e~~~~aDvV~l~vp~~~~~~ 217 (988)
.+||||||. |+.|..|.+.|.+ ..++ +..+.-. ..+.-.+......+. .++ +...++|++|+|+|+... +
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~-~~~~~~Divf~a~~~~~s-~ 82 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKI-NSFEGVDIAFFSAGGEVS-R 82 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCH-HHhcCCCEEEECCChHHH-H
Confidence 469999997 9999999999995 5666 5555322 222111211122222 133 345789999999998753 3
Q ss_pred HHHccccchhhhCCCCCEEEecCCC
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.+. .. ....|..|||.|+.
T Consensus 83 ~~~---~~---~~~~G~~VID~Ss~ 101 (347)
T PRK06728 83 QFV---NQ---AVSSGAIVIDNTSE 101 (347)
T ss_pred HHH---HH---HHHCCCEEEECchh
Confidence 332 11 23468999999975
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.71 E-value=6.7 Score=43.09 Aligned_cols=266 Identities=17% Similarity=0.153 Sum_probs=147.1
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHh---cCC---------------------cccCCHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQN---VGG---------------------LIANSPAEA 199 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~---~G~---------------------~~~~s~~e~ 199 (988)
++.++-++|+|...--+|.-|..+| .++-.++|-.-+-+.+.+ .+. .+..+++++
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~ 82 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQA 82 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHh
Confidence 4568999999999999999999988 578888875544444332 211 134578888
Q ss_pred hccCcEEEEEcCChHHHHHHHccccch-hhhCCCC-CEEEecCCCCHH-HHHHHHHHHHhcCCCceEecCcccCCccccc
Q 001973 200 AKDVGVLVIMVTNEAQAESVLYGDLGA-VSALSSG-ASIILSSTVSPG-FVSQLERRLQFEGKDLKLVDAPVSGGVKRAS 276 (988)
Q Consensus 200 ~~~aDvV~l~vp~~~~~~~vl~~~~~i-~~~l~~g-~ivId~st~~p~-~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~ 276 (988)
..+-+.+++|||.+. -.+|+ +++ .+.|+.= ++|...+|.... ..... ....+.++.+++-..--+.....
T Consensus 83 ~~dwqtlilav~aDa-Y~dvl---qqi~~e~L~~vk~viLiSptfGsn~lv~~~---mnk~~~daeViS~SsY~~dTk~i 155 (431)
T COG4408 83 VGDWQTLILAVPADA-YYDVL---QQIPWEALPQVKSVILISPTFGSNLLVQNL---MNKAGRDAEVISLSSYYADTKYI 155 (431)
T ss_pred hchhheEEEEeecHH-HHHHH---hcCCHhHhccccEEEEecccccccHHHHHH---HhhhCCCceEEEeehhcccceee
Confidence 888999999999876 44454 222 1223222 333333333322 22222 22223444444322111111100
Q ss_pred CCC-----------eEEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHH-----------------------
Q 001973 277 MGE-----------LTIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVK----------------------- 319 (988)
Q Consensus 277 ~g~-----------l~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~K----------------------- 319 (988)
..+ -.+..| ++....+.+..+++..|-++.. +..+-.++...
T Consensus 156 d~~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~~-~esp~~AEtrnit~YVHpPlflndfsL~aif~~~ 234 (431)
T COG4408 156 DAEQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVEP-CESPLAAETRNITLYVHPPLFLNDFSLQAIFYPE 234 (431)
T ss_pred cccCcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCceEE-cCChhhhhhcccceeecCcchhhhhHHHHHhCCc
Confidence 000 113343 3455667788888877655544 23332222211
Q ss_pred --------H-----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC---CCcccc----cccc--c--------
Q 001973 320 --------M-----ANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG---GSSWMF----ENRV--P-------- 369 (988)
Q Consensus 320 --------l-----~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~---~~s~~~----~~~~--~-------- 369 (988)
+ +...+..-+...+.|.+++..+.|+.+-.+++.++... .-+... +++. +
T Consensus 235 ~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlL 314 (431)
T COG4408 235 QRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLL 314 (431)
T ss_pred CCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHH
Confidence 1 11223334566789999999999999888888777642 001000 1100 0
Q ss_pred -----cccCCCCC------CC--c---------------------hhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001973 370 -----HMLDNDYT------PY--S---------------------ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLA 415 (988)
Q Consensus 370 -----~~~~~~~~------~~--~---------------------~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~ 415 (988)
.++-.-|+ .. | .++. ..-+..++.+|.-.++++|..+.....|+.
T Consensus 315 fVRYtalLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~ED-y~kla~iq~la~~l~v~~Pt~dq~lt~ye~ 393 (431)
T COG4408 315 FVRYTALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLED-YYKLATIQLLAGALDVVMPTADQLLTRYEQ 393 (431)
T ss_pred HHHHHHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 00000010 00 1 1111 123457789999999999999999999999
Q ss_pred HHHc
Q 001973 416 GSAA 419 (988)
Q Consensus 416 a~~~ 419 (988)
+.++
T Consensus 394 a~k~ 397 (431)
T COG4408 394 ALKA 397 (431)
T ss_pred HHHH
Confidence 8765
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.062 Score=60.91 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=56.1
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCe---EEEE--eCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFT---VIGY--DVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~---V~v~--dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
.+||+||| .|+.|..+.+.|.+.+|. +... .|+..+.-........+.+...+.++++|+||+|+|+....+-+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~~ 86 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKFG 86 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHHH
Confidence 46999997 599999999999998874 3333 23332221111111222222234558899999999987643332
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
- . ....|..|||.|+.
T Consensus 87 ~----~---~~~~g~~VIDlS~~ 102 (344)
T PLN02383 87 P----I---AVDKGAVVVDNSSA 102 (344)
T ss_pred H----H---HHhCCCEEEECCch
Confidence 1 1 22468999999974
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.11 Score=49.07 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHHHhC----CCe-EEEEeCC--hhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHHHccc
Q 001973 153 GLGAMGFGMATHLLRS----NFT-VIGYDVY--RPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 153 G~G~mG~~lA~~L~~~----G~~-V~v~dr~--~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
|+|.||+.++..|.+. +++ +.++||+ ......-...+...++++.++++ ..|+|+-|.+. ..+.+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~~~~--- 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVAEYY--- 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHHHHH---
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHHHHH---
Confidence 8999999999999987 455 5556888 11111112234567889999988 89999999655 4344443
Q ss_pred cchhhhCCCCCEEEecCCCCH---HHHHHHHHHHHh
Q 001973 224 LGAVSALSSGASIILSSTVSP---GFVSQLERRLQF 256 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p---~~~~~l~~~l~~ 256 (988)
.+.+..|.-||..|...- ....++.+...+
T Consensus 77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~ 109 (117)
T PF03447_consen 77 ---EKALERGKHVVTANKGALADEALYEELREAARK 109 (117)
T ss_dssp ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHH
T ss_pred ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHH
Confidence 345567888887764322 344455444444
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.078 Score=57.73 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=60.6
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..++.|||-+ ..|.++|..|...|..|++++++. .++.+.+++||+||.+++.+.-+.
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~lv~------- 210 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGFIT------- 210 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccccC-------
Confidence 4799999999 999999999999999999998653 356778899999999998654221
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 211 --~~~vk~GavVIDVgi~ 226 (279)
T PRK14178 211 --PDMVKPGATVIDVGIN 226 (279)
T ss_pred --HHHcCCCcEEEEeecc
Confidence 2346899999998865
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.14 Score=57.30 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc--c---CCHHHHh-ccCcEEEEEcCChHHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI--A---NSPAEAA-KDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~--~---~s~~e~~-~~aDvV~l~vp~~~~~~~v 219 (988)
-.+|+|+|+|-+|..-.+.....|.+|+++||++++.+.+.+.|+.. . .+..+.+ +..|+++.+++ +.++...
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~ 245 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPS 245 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHH
Confidence 35899999998888777777779999999999999999999888642 1 1122222 23888888888 6655554
Q ss_pred H
Q 001973 220 L 220 (988)
Q Consensus 220 l 220 (988)
+
T Consensus 246 l 246 (339)
T COG1064 246 L 246 (339)
T ss_pred H
Confidence 4
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.17 Score=49.44 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=59.7
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|+|-+ ..|.+++..|.+.|..|+..+++. .++++.+++||+|+.+++.+.. + +
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~----i---~ 86 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEK----V---P 86 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCc----c---C
Confidence 4689999865 579999999999999999998642 3677889999999999998642 2 1
Q ss_pred chhhhCCCCCEEEecCCCC
Q 001973 225 GAVSALSSGASIILSSTVS 243 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~ 243 (988)
.+++++|.+++|.+...
T Consensus 87 --~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 --TEWIKPGATVINCSPTK 103 (140)
T ss_pred --HHHcCCCCEEEEcCCCc
Confidence 34578999999887654
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.0074 Score=59.71 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=70.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHhc----CCCccccccccc--cccCCCCCC-----
Q 001973 311 GCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTR-VLFNIITDS----GGSSWMFENRVP--HMLDNDYTP----- 378 (988)
Q Consensus 311 ~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~-~~~~~l~~~----~~~s~~~~~~~~--~~~~~~~~~----- 378 (988)
..|....+++..|...+++..++.|+.+++++.|.+++ ++++...-+ ++.|..++|+.- .+..++...
T Consensus 19 a~Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~~~G~~l~~g~~~~~~~~~ 98 (149)
T PF07479_consen 19 AAGIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNRRFGKALGKGGKSIEEAEK 98 (149)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcHHHHHHHHccCCCHHHHHH
Confidence 56677778889999999999999999999999999988 776543332 233333344321 122221100
Q ss_pred ---CchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001973 379 ---YSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAG 416 (988)
Q Consensus 379 ---~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a 416 (988)
....-+...-...+.++++++++++|++.++++++..-
T Consensus 99 ~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~~~ 139 (149)
T PF07479_consen 99 EMLGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILYEN 139 (149)
T ss_dssp HHTTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHHS-
T ss_pred hhhhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHcCc
Confidence 01122344556788899999999999999999998643
|
1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B .... |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.19 Score=59.84 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=49.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHH-HhcCCcccC--CHHHHhccCcEEEEEc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF-QNVGGLIAN--SPAEAAKDVGVLVIMV 210 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-~~~G~~~~~--s~~e~~~~aDvV~l~v 210 (988)
++|.|+|+|..|.++|..|.+.|++|+++|+++....++ .+.|+.+.. ...+-+.++|+||.+-
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Sp 82 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSP 82 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCC
Confidence 589999999999999999999999999999987665543 444766532 2334466889888763
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.092 Score=58.65 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=47.4
Q ss_pred eEEEEcc-chHHHHHHHHHHhCCC--eEEEEeCChhHH--HHHHhcC--Cccc----C-CHHHHhccCcEEEEEcCCh
Q 001973 148 RVGFIGL-GAMGFGMATHLLRSNF--TVIGYDVYRPTL--TKFQNVG--GLIA----N-SPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 148 kIgiIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~G--~~~~----~-s~~e~~~~aDvV~l~vp~~ 213 (988)
||+|||+ |.+|..+|..|+..++ ++.++|+++... -+|...- ..+. + ++.+.++++|+|+++...+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~ 78 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP 78 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC
Confidence 6999999 9999999999998885 799999987211 1222210 1111 1 3467899999999988654
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.045 Score=62.07 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=56.9
Q ss_pred eEEEEc-cchHHHHHHHHHHhCCCeE---EEEeCChhHHHHHHhcCC--cccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 148 RVGFIG-LGAMGFGMATHLLRSNFTV---IGYDVYRPTLTKFQNVGG--LIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 148 kIgiIG-~G~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~G~--~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
||+||| .|+.|..+.+.|.+++|++ .++.++.+.-+.+.-.|. .+.+-..+.++++|++|+|+|.....+.+-
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a~- 79 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFAP- 79 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHHH-
Confidence 689999 8999999999999988873 344444333223322221 222212344589999999999876433321
Q ss_pred cccchhhhCCCCCEEEecCCC
Q 001973 222 GDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~ 242 (988)
.++..|..|||.|+.
T Consensus 80 ------~~~~~G~~VID~ss~ 94 (339)
T TIGR01296 80 ------KAAKCGAIVIDNTSA 94 (339)
T ss_pred ------HHHHCCCEEEECCHH
Confidence 233467899999874
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.11 Score=53.23 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=62.2
Q ss_pred CCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHH-HhcCCccc--CC----HHHHhccCcEEEEEcCChHH-H
Q 001973 146 VTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKF-QNVGGLIA--NS----PAEAAKDVGVLVIMVTNEAQ-A 216 (988)
Q Consensus 146 ~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-~~~G~~~~--~s----~~e~~~~aDvV~l~vp~~~~-~ 216 (988)
.++|.|||-+. +|.++|..|.+.|..|+++|.+.-....= .......+ .+ +.+.+++||+||.+++.+.. +
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i 141 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKV 141 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCcc
Confidence 35899999775 79999999999999999998654322000 00001111 12 67889999999999998763 2
Q ss_pred HHHHccccchhhhCCCCCEEEecCCC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
. ...+++|.+|||.++.
T Consensus 142 ~---------~d~ik~GavVIDVGi~ 158 (197)
T cd01079 142 P---------TELLKDGAICINFASI 158 (197)
T ss_pred C---------HHHcCCCcEEEEcCCC
Confidence 2 2456799999999866
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.14 Score=53.94 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=30.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~ 179 (988)
..+|.|||+|.+|+.++.+|++.|. +++++|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3589999999999999999999997 599999884
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.11 Score=59.13 Aligned_cols=89 Identities=18% Similarity=0.258 Sum_probs=55.7
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCC-CeEEEE-eCChhHHHHHHhc-------CC-------cccCCHHHHhccCcEEEEE
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSN-FTVIGY-DVYRPTLTKFQNV-------GG-------LIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G-~~V~v~-dr~~~~~~~l~~~-------G~-------~~~~s~~e~~~~aDvV~l~ 209 (988)
+||+|+|+ |.||..+++.|.++. +++... +.+++.-+.+... +. .+.+...+...++|+||+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 48999995 999999999998877 576665 5544322222110 00 1111122345789999999
Q ss_pred cCChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
+|.....+.+. . ....|..+||.|+.
T Consensus 81 ~p~~~s~~~~~----~---~~~~G~~VIDlsg~ 106 (341)
T TIGR00978 81 LPSEVAEEVEP----K---LAEAGKPVFSNASN 106 (341)
T ss_pred CCHHHHHHHHH----H---HHHCCCEEEECChh
Confidence 99875433321 1 12357888998865
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.35 Score=53.50 Aligned_cols=89 Identities=22% Similarity=0.167 Sum_probs=72.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
-+++.|.|.|..|..+|.+|...|-+|.|++.+|-++-+..-.|..+. ..++++..+|++++++.+.. |+. .+
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkd----Vi~--~e 281 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKD----VIR--KE 281 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcC----ccC--HH
Confidence 468999999999999999999999999999999998888777788764 57788999999999998744 332 23
Q ss_pred hhhhCCCCCEEEecCC
Q 001973 226 AVSALSSGASIILSST 241 (988)
Q Consensus 226 i~~~l~~g~ivId~st 241 (988)
-...++.|.++.+...
T Consensus 282 h~~~MkDgaIl~N~GH 297 (420)
T COG0499 282 HFEKMKDGAILANAGH 297 (420)
T ss_pred HHHhccCCeEEecccc
Confidence 3455778888888774
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.27 Score=52.38 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=36.5
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
+..++|.|+|. |.+|..+++.|++.|++|++.+|++++.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 33468999985 99999999999999999999999988766553
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.16 Score=55.36 Aligned_cols=76 Identities=22% Similarity=0.186 Sum_probs=61.2
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+. +|.++|..|.+.|..|+++... +.++.+.+++||+|+.+++.+..+.
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~~~~i~------ 215 (284)
T PRK14170 156 EGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------------TKDLPQVAKEADILVVATGLAKFVK------ 215 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC------
Confidence 347999999764 7999999999999999988642 3467888999999999999876322
Q ss_pred cchhhhCCCCCEEEecCCCC
Q 001973 224 LGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~ 243 (988)
...+++|.+|||.++..
T Consensus 216 ---~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 216 ---KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred ---HHHcCCCCEEEEccCcc
Confidence 24577999999988763
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.33 Score=61.90 Aligned_cols=114 Identities=21% Similarity=0.225 Sum_probs=69.4
Q ss_pred CCCeEEEEccchHHHHH-HHHHHhCCCeEEEEeCCh-hHHHHHHhcCCcccC-CHHHHhccCcEEEEEcCCh---HHHHH
Q 001973 145 SVTRVGFIGLGAMGFGM-ATHLLRSNFTVIGYDVYR-PTLTKFQNVGGLIAN-SPAEAAKDVGVLVIMVTNE---AQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~l-A~~L~~~G~~V~v~dr~~-~~~~~l~~~G~~~~~-s~~e~~~~aDvV~l~vp~~---~~~~~ 218 (988)
++++|.|||+|..|.+. |+.|.+.|++|+++|.++ ...+.|.+.|+.+.. ...+.+.++|+|+.+-.-+ ..++.
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~ 82 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLS 82 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHH
Confidence 34579999999999997 999999999999999754 345567777876532 2335567889888654222 22322
Q ss_pred HHc------cccchhhhCCCC-CEEEecCCCCH-HHHHHHHHHHHhcC
Q 001973 219 VLY------GDLGAVSALSSG-ASIILSSTVSP-GFVSQLERRLQFEG 258 (988)
Q Consensus 219 vl~------~~~~i~~~l~~g-~ivId~st~~p-~~~~~l~~~l~~~~ 258 (988)
... +.-+++..+.++ .+|..+.|..- .++.-++..+...+
T Consensus 83 a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 83 AKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred HHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 211 011222222222 45555555544 45555566676643
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.17 Score=56.14 Aligned_cols=40 Identities=8% Similarity=0.157 Sum_probs=34.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCe-EEEEeCCh---hHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFT-VIGYDVYR---PTLTKFQ 186 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~-V~v~dr~~---~~~~~l~ 186 (988)
+++.|+|.|-+|.+++..|++.|.+ |+++||++ ++.+++.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~ 170 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTA 170 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHH
Confidence 4799999999999999999999986 99999997 5665544
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.18 Score=56.01 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=75.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHH---HHHHHcc-
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQ---AESVLYG- 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~---~~~vl~~- 222 (988)
.+|+|||.-.=-..+++.|.+.|++|.++..+.+. ....|+..+++.+++++++|+|+..+|...+ ++..+..
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~ 79 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNE 79 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCccccCCceeecccccc
Confidence 58999999999999999999999999998754322 1234888888889999999999999885321 1111100
Q ss_pred ----ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 223 ----DLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 223 ----~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
+.+.+..++++.+++ .+...|... + .+.+ +|+.+++.
T Consensus 80 ~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~---~~~~--~gi~~~~~ 120 (296)
T PRK08306 80 KLVLTEELLELTPEHCTIF-SGIANPYLK-E---LAKE--TNRKLVEL 120 (296)
T ss_pred CCcchHHHHHhcCCCCEEE-EecCCHHHH-H---HHHH--CCCeEEEE
Confidence 134567788997555 355555533 2 2333 56666644
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.22 Score=55.07 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=53.2
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.||+|+| .|+.|..+.+.|..+.+ ++... +.++. .. ..+.++..+++|++|+|+|+....+-+-
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l--~s~~~-------~~-~~~~~~~~~~~D~vFlalp~~~s~~~~~---- 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSI--APDRR-------KD-AAERAKLLNAADVAILCLPDDAAREAVS---- 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEE--ecccc-------cC-cCCHhHhhcCCCEEEECCCHHHHHHHHH----
Confidence 4899997 59999999999998753 33332 22211 11 2245566688999999999876443332
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
. ....|..|||+|+.
T Consensus 68 ~---~~~~g~~VIDlSad 82 (310)
T TIGR01851 68 L---VDNPNTCIIDASTA 82 (310)
T ss_pred H---HHhCCCEEEECChH
Confidence 1 22468899999964
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.071 Score=51.93 Aligned_cols=113 Identities=20% Similarity=0.167 Sum_probs=62.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~~ 215 (988)
.||.|+|+|.+|+.++.+|++.|. +++++|.+.=....+... |...+....+.+. ..++=+.+.+....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~ 82 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID 82 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence 489999999999999999999997 799999875333332221 2111112222222 11222333333221
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCccc
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVS 269 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~ 269 (988)
.+.. ..+ +..-++||+++.. +..-..+.+.+.+ .+..++++-+.
T Consensus 83 ~~~~----~~~---~~~~d~vi~~~d~-~~~~~~l~~~~~~--~~~p~i~~~~~ 126 (135)
T PF00899_consen 83 EENI----EEL---LKDYDIVIDCVDS-LAARLLLNEICRE--YGIPFIDAGVN 126 (135)
T ss_dssp HHHH----HHH---HHTSSEEEEESSS-HHHHHHHHHHHHH--TT-EEEEEEEE
T ss_pred cccc----ccc---ccCCCEEEEecCC-HHHHHHHHHHHHH--cCCCEEEEEee
Confidence 1111 111 2244678877655 5555667776666 46677766544
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.52 Score=56.65 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=48.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh--HHHHHHhc--CCccc--CCHHHHhccCcEEEEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP--TLTKFQNV--GGLIA--NSPAEAAKDVGVLVIM 209 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~--G~~~~--~s~~e~~~~aDvV~l~ 209 (988)
.++|.|+|+|..|.++|+.|.+.|++|+++|.+.. ..+.|.+. |+.+. ....+.+.++|+|+.+
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 35899999999999999999999999999997542 33456555 44332 1234556789999987
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.45 Score=50.88 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=65.4
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCC-Ce-EEEEeCChhHH-----HHH---HhcCCcccCCHHHHhccCcEEEEEcCChH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSN-FT-VIGYDVYRPTL-----TKF---QNVGGLIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G-~~-V~v~dr~~~~~-----~~l---~~~G~~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
+|||+|+|+ |.||..+.+.+.+.. ++ +-.++|.++.. .++ ...|..+.+++.....++|++|=......
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~~ 81 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPEA 81 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCchh
Confidence 479999999 999999999998876 55 55568776432 112 22356677778888889999996654433
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHH
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRL 254 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l 254 (988)
+...+ .+... .+-.+||-++.-++...+.+.+..
T Consensus 82 -~~~~l----~~~~~-~~~~lVIGTTGf~~e~~~~l~~~a 115 (266)
T COG0289 82 -TLENL----EFALE-HGKPLVIGTTGFTEEQLEKLREAA 115 (266)
T ss_pred -hHHHH----HHHHH-cCCCeEEECCCCCHHHHHHHHHHH
Confidence 33333 11111 123456655666666665655544
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.47 Score=56.73 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=48.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhcCCcccC-CHHHHhccCcEEEEEcC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP-----TLTKFQNVGGLIAN-SPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~G~~~~~-s~~e~~~~aDvV~l~vp 211 (988)
.++|.|||.|..|..+|..|.+.|++|+++|+++. ..+.+.+.|+.+.. ...+....+|+|+++..
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~G 87 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPG 87 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCC
Confidence 35899999999999999999999999999996642 23456666876532 11123456899998863
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.12 Score=58.14 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=46.4
Q ss_pred eEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCChhH--HH----HHHhc------CCcccCCHHHHhccCcEEE
Q 001973 148 RVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVYRPT--LT----KFQNV------GGLIANSPAEAAKDVGVLV 207 (988)
Q Consensus 148 kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~----~l~~~------G~~~~~s~~e~~~~aDvV~ 207 (988)
||+|||+ |.+|+.+|..|+..|. ++.++|+++.. .+ ++... +....++..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 9999999999998553 69999996542 21 11111 1222335567889999999
Q ss_pred EEcCCh
Q 001973 208 IMVTNE 213 (988)
Q Consensus 208 l~vp~~ 213 (988)
++-..+
T Consensus 81 itAG~~ 86 (324)
T TIGR01758 81 LVGAFP 86 (324)
T ss_pred EcCCCC
Confidence 987654
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.17 Score=56.37 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=46.9
Q ss_pred EEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc------CCcccCCHHHHhccCcEEEEEcCCh
Q 001973 151 FIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV------GGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 151 iIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~------G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|.+|..+|..|+..+. ++.++|++.++++. |... ...+..+.-+.+++||+|+++...+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~ 75 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAP 75 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCC
Confidence 69999999999999998885 79999998765543 2221 1233444557789999999987653
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.33 Score=57.52 Aligned_cols=110 Identities=20% Similarity=0.279 Sum_probs=67.0
Q ss_pred eEEEEccchHHHH-HHHHHHhCCCeEEEEeCChh-HHHHHHhcCCcccC-CHHHHhccCcEEEEEcCC---hHHHHHHHc
Q 001973 148 RVGFIGLGAMGFG-MATHLLRSNFTVIGYDVYRP-TLTKFQNVGGLIAN-SPAEAAKDVGVLVIMVTN---EAQAESVLY 221 (988)
Q Consensus 148 kIgiIG~G~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~G~~~~~-s~~e~~~~aDvV~l~vp~---~~~~~~vl~ 221 (988)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.|.+.|+.+.. ...+.++++|+|+.+-.- ...++....
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 4889999999998 99999999999999997653 34557677876532 223456679988876422 222333211
Q ss_pred ------cccchh-hhCCCCCEEEecCC-CCHHHHHHHHHHHHhc
Q 001973 222 ------GDLGAV-SALSSGASIILSST-VSPGFVSQLERRLQFE 257 (988)
Q Consensus 222 ------~~~~i~-~~l~~g~ivId~st-~~p~~~~~l~~~l~~~ 257 (988)
+.-+++ ..+.+..+|..+.| ++..++.-++..+...
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 124 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEA 124 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHc
Confidence 111222 22223345555544 4445555556666653
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.21 Score=54.60 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=60.6
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+ .+|.++|..|.+.|..|+++... +.++++..++||+|+.+++.+..+.
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~------ 213 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK--------------TQDLPAVTRRADVLVVAVGRPHLIT------ 213 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC------
Confidence 34799999975 58999999999999999988643 3467788899999999999876322
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.++.
T Consensus 214 ---~~~vk~GavVIDVGin 229 (287)
T PRK14173 214 ---PEMVRPGAVVVDVGIN 229 (287)
T ss_pred ---HHHcCCCCEEEEccCc
Confidence 2457899999998865
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.36 Score=51.88 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=55.6
Q ss_pred CCCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 143 SNSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 143 ~~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+.+.+++-|.|. |.+|..+++.|++.|++|++.+|+++..+.+.+. ..+.-.....+..-+.+..+++.++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~- 74 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQ-------IVADGGTAIAVQVDVSDPDSAKAMA- 74 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHH-
Confidence 334568999987 9999999999999999999999998766554321 0000001122223334555555555
Q ss_pred cccchhhhCCCCCEEEecCCC
Q 001973 222 GDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~ 242 (988)
+.+.+...+=.++|++.+.
T Consensus 75 --~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 75 --DATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred --HHHHHHhCCCCEEEECCCC
Confidence 3344444444677776654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.36 Score=51.48 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=35.4
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKF 185 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 185 (988)
++++|-|.|. |.+|..+++.|+++|++|++.+|++++.+.+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 3468999985 9999999999999999999999998776544
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.38 Score=51.43 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=35.7
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
+++++-|.|. |.+|..+++.|+++|++|++.+|+++..+.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA 47 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3457888885 99999999999999999999999987766544
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.17 Score=46.82 Aligned_cols=71 Identities=14% Similarity=0.019 Sum_probs=47.1
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-cCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-ANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
+..+|.|||.|.+|..=++.|.+.|.+|+++..+.+..+ ..++. ....++.++++++||.+.+++..-+.+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~i 77 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPELNEAI 77 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHHHHHH
Confidence 346899999999999999999999999999998861111 22221 122234566778888777776533333
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.22 Score=54.42 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=60.5
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|.|||-+ .+|.++|..|.+.|..|+++... +.++.+..++||+|+.+++.+..+.
T Consensus 155 ~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~p~~i~------ 214 (282)
T PRK14169 155 AGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK--------------TRNLKQLTKEADILVVAVGVPHFIG------ 214 (282)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEccCCcCccC------
Confidence 34799999976 57999999999999999988532 3467788899999999999877322
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 215 ---~~~vk~GavVIDvGin 230 (282)
T PRK14169 215 ---ADAVKPGAVVIDVGIS 230 (282)
T ss_pred ---HHHcCCCcEEEEeecc
Confidence 2357899999998865
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.23 Score=54.62 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=60.5
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||-+ .+|.+++..|.++|..|+++... +.++.+.+++||+|+++++.+..+.
T Consensus 158 Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~------- 216 (297)
T PRK14186 158 GKKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPNLIG------- 216 (297)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC-------
Confidence 4799999976 57999999999999999998532 3467788899999999999876322
Q ss_pred chhhhCCCCCEEEecCCCC
Q 001973 225 GAVSALSSGASIILSSTVS 243 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~ 243 (988)
..++++|.+|||.+...
T Consensus 217 --~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 217 --AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred --HHHcCCCCEEEEecccc
Confidence 34578999999988653
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.23 Score=54.22 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=60.7
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+ .+|.++|..|.+.|..|++++.. +.++.+..++||+|+.+++.+..+.
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~--------------T~nl~~~~~~ADIvIsAvGkp~~i~------ 215 (282)
T PRK14166 156 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK--------------TKDLSLYTRQADLIIVAAGCVNLLR------ 215 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC------
Confidence 34799999976 57999999999999999988753 3467788899999999999877332
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 216 ---~~~vk~GavVIDvGin 231 (282)
T PRK14166 216 ---SDMVKEGVIVVDVGIN 231 (282)
T ss_pred ---HHHcCCCCEEEEeccc
Confidence 2357799999998865
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.39 Score=52.66 Aligned_cols=116 Identities=17% Similarity=0.059 Sum_probs=65.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEA 214 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~ 214 (988)
..+|.|||+|-+|+.++.+|+..|. +++++|.+.=....++.+ |-..+....+.+. ..++=+.+.+..-
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l 106 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGI 106 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 3589999999999999999999995 799999876544444433 2111222222222 2233333333211
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCC-HHHHHHHHHHHHhcCCCceEecCcccC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVS-PGFVSQLERRLQFEGKDLKLVDAPVSG 270 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~-p~~~~~l~~~l~~~~~g~~~ldapv~g 270 (988)
.- +.+...+..-++|||++... ..+-..+.+.... .++.++.+.+.+
T Consensus 107 ~~-------~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~--~~iP~V~~~~~g 154 (287)
T PRK08223 107 GK-------ENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ--RGIPALTAAPLG 154 (287)
T ss_pred Cc-------cCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH--cCCCEEEEeccC
Confidence 10 11222234557888888653 2444445555544 456666654433
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.38 Score=51.48 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=67.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcccC---C--HHHHh----c--cCcEEEEEcCChH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIAN---S--PAEAA----K--DVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~~---s--~~e~~----~--~aDvV~l~vp~~~ 214 (988)
.+|.|||+|..|+.++.+|++.|. +++++|.+.-....+..+-....+ . -.+++ + ..++.+.+.+..-
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~ 107 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRL 107 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 589999999999999999999995 699999886665555543110000 0 11111 1 3566666544321
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSG 270 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g 270 (988)
..+ .+...+.+-++|+|+.-. +.+-..+.+...+ .++.++.+.+.|
T Consensus 108 ~~~-------~~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~--~~ip~i~g~~~g 153 (231)
T PRK08328 108 SEE-------NIDEVLKGVDVIVDCLDN-FETRYLLDDYAHK--KGIPLVHGAVEG 153 (231)
T ss_pred CHH-------HHHHHHhcCCEEEECCCC-HHHHHHHHHHHHH--cCCCEEEEeecc
Confidence 111 112223456889988766 5554455555544 466677655443
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.46 Score=56.31 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=66.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh--HHHHHHh--cCCcccC--CHHHHhccCcEEEEEcCCh---HHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP--TLTKFQN--VGGLIAN--SPAEAAKDVGVLVIMVTNE---AQA 216 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~--~G~~~~~--s~~e~~~~aDvV~l~vp~~---~~~ 216 (988)
.-.|.|||+|..|.++|+.|.+.|++|+++|..+. ..++|.+ .|+.+.. ...+.+.++|+|+.+-.-+ ..+
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 35799999999999999999999999999997643 3344655 3665532 2344567889887764221 223
Q ss_pred HHHHc------cccchhhhCCCCCEEEecCCCCHHH-HHHHHHHHHh
Q 001973 217 ESVLY------GDLGAVSALSSGASIILSSTVSPGF-VSQLERRLQF 256 (988)
Q Consensus 217 ~~vl~------~~~~i~~~l~~g~ivId~st~~p~~-~~~l~~~l~~ 256 (988)
..... ..-+++..+.+..+|..+.|..-.| +.-++..+..
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 22211 0012222222445555555555554 4455666655
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.24 Score=54.09 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=59.9
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||-+ .+|.++|..|.++|..|++++.. +.++.+..++||+|+.+++.+..+.
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~--------------T~dl~~~~k~ADIvIsAvGkp~~i~------- 216 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNFIT------- 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHhhhcCEEEEccCCcCcCC-------
Confidence 4699999976 57999999999999999998643 3467777899999999999876322
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 217 --~~~vk~gavVIDvGin 232 (282)
T PRK14180 217 --ADMVKEGAVVIDVGIN 232 (282)
T ss_pred --HHHcCCCcEEEEeccc
Confidence 2457899999998764
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.061 Score=49.08 Aligned_cols=68 Identities=25% Similarity=0.255 Sum_probs=50.9
Q ss_pred CeEEEEccchHHHHHHHHHH-hCCCe-EEEEeCChhHHHHHHhcCCcccCCHHHHhcc--CcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLL-RSNFT-VIGYDVYRPTLTKFQNVGGLIANSPAEAAKD--VGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~-~~G~~-V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~--aDvV~l~vp~~~~ 215 (988)
.+|.++|+|..|.+++.++. ..|+. +.++|.++++..+-. .|+.+..+..++.+. .|+-++++|....
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~~a 75 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAEAA 75 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHHHH
Confidence 58999999999999986554 46765 677899998754211 266677788888776 9999999998663
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.28 Score=53.63 Aligned_cols=75 Identities=17% Similarity=0.128 Sum_probs=61.1
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||-+ .+|.+++..|.+.|..|++++.. +.++.+..++||+|+.+++.+..+.
T Consensus 159 Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~------- 217 (284)
T PRK14177 159 GKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIK------- 217 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccC-------
Confidence 4699999976 57999999999999999998743 3467788899999999999876322
Q ss_pred chhhhCCCCCEEEecCCCC
Q 001973 225 GAVSALSSGASIILSSTVS 243 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~ 243 (988)
...+++|.+|||.++..
T Consensus 218 --~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 218 --ADWISEGAVLLDAGYNP 234 (284)
T ss_pred --HHHcCCCCEEEEecCcc
Confidence 34578999999988753
|
|
| >KOG4153 consensus Fructose 1,6-bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.05 Score=56.68 Aligned_cols=78 Identities=6% Similarity=-0.093 Sum_probs=35.3
Q ss_pred CCCcEEecCCCCCChhHHHHHHHHhccCcccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEecc
Q 001973 891 PGVPYVVFPGNVGDNNAVANVVRSWARPVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRS 969 (988)
Q Consensus 891 ~gl~ivtK~G~fG~~~~l~~~~~~l~~~~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~ 969 (988)
++.+...+.|+.|..-+|-.+..... ....-.+++++..+....|++++||+++++...+..+++++..+|.|+|.++
T Consensus 14 g~~v~~lFtya~eh~fAipainvtsS-stA~aaleaar~~~spiilqtsngga~~faGk~~snegq~asi~gaIaaaHy 91 (358)
T KOG4153|consen 14 GEDVHNLFTYAKEHKFAIPAINVTSS-STAVAALEAARDSKSPIILQTSNGGAAYFAGKGISNEGQNASIKGAIAAAHY 91 (358)
T ss_pred CCcceEeeccccccccccceeeeech-HHHHHHHHHHHhccCCceEEecCCceeEeccchhhhhhhhccccchhhhhcc
Confidence 34455555555555444433222111 0011133444444444455555555555555555555555555555555444
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.36 Score=55.15 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=60.9
Q ss_pred eEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHh-cCCcccCCHH---------HHh--ccCcEEEEEcCChH
Q 001973 148 RVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQN-VGGLIANSPA---------EAA--KDVGVLVIMVTNEA 214 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~-~G~~~~~s~~---------e~~--~~aDvV~l~vp~~~ 214 (988)
++.|+|+|.+|...+..+...| .+|++.|+++++.+..++ .|.....+.. +.. ..+|++|.|+..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 7999999999999988888888 578889999999998887 4544322221 111 24788888888665
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.++..+ ..++++-.++..+..
T Consensus 251 ~~~~ai-------~~~r~gG~v~~vGv~ 271 (350)
T COG1063 251 ALDQAL-------EALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHHH-------HHhcCCCEEEEEecc
Confidence 444433 445555555555544
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.38 Score=51.75 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=67.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~~ 215 (988)
.||.|+|+|.+|+.++.+|++.|. +++++|.+.-....|..+ |...+....+.+. ..++-+.+.+..-.
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~ 104 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLD 104 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCC
Confidence 589999999999999999999995 799999886554444432 2111112222221 23444444432211
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSG 270 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g 270 (988)
-+ .+.+.+..-++|||++.. +.+-..+.+...+ .++.++.+.+.+
T Consensus 105 ~~-------~~~~~~~~~DlVvd~~D~-~~~r~~ln~~~~~--~~ip~v~~~~~g 149 (240)
T TIGR02355 105 DA-------ELAALIAEHDIVVDCTDN-VEVRNQLNRQCFA--AKVPLVSGAAIR 149 (240)
T ss_pred HH-------HHHHHhhcCCEEEEcCCC-HHHHHHHHHHHHH--cCCCEEEEEecc
Confidence 11 122234456788888765 5555566666655 467777665444
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.54 Score=50.86 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=55.7
Q ss_pred hcCCCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 141 AKSNSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 141 m~~~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
||+...++|-|.|. |.+|..+++.|+++|++|++.+|+.+..+++.+.-. .....+-.-+.++..++.+
T Consensus 1 ~~~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~ 70 (257)
T PRK07067 1 MMRLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG----------PAAIAVSLDVTRQDSIDRI 70 (257)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC----------CceEEEEccCCCHHHHHHH
Confidence 33334457888874 999999999999999999999999887766544210 0112222224455556555
Q ss_pred HccccchhhhCCCCCEEEecCC
Q 001973 220 LYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st 241 (988)
+ +.+.+...+=+.+|++..
T Consensus 71 ~---~~~~~~~~~id~li~~ag 89 (257)
T PRK07067 71 V---AAAVERFGGIDILFNNAA 89 (257)
T ss_pred H---HHHHHHcCCCCEEEECCC
Confidence 5 344444444466776654
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.28 Score=54.04 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=61.0
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|.|||-+. +|.++|..|.+.|..|++++.. +.++++.++++|+|+.++..+..+.
T Consensus 166 ~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~i~------ 225 (299)
T PLN02516 166 KGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMMIK------ 225 (299)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC------
Confidence 347999999764 7999999999999999999643 3467888999999999998764222
Q ss_pred cchhhhCCCCCEEEecCCCC
Q 001973 224 LGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~ 243 (988)
..++++|.+|||.+...
T Consensus 226 ---~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 226 ---GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred ---HHHcCCCCEEEEeeccc
Confidence 34578999999988653
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.28 Score=53.43 Aligned_cols=75 Identities=24% Similarity=0.221 Sum_probs=60.6
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+|+.+++.+..+.
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~------ 216 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFID------ 216 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC------
Confidence 34799999976 57999999999999999999743 3467888899999999999876322
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||....
T Consensus 217 ---~~~ik~gavVIDvGin 232 (278)
T PRK14172 217 ---EEYVKEGAIVIDVGTS 232 (278)
T ss_pred ---HHHcCCCcEEEEeecc
Confidence 2457899999998654
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=93.16 E-value=5.3 Score=47.90 Aligned_cols=65 Identities=11% Similarity=-0.074 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 001973 286 GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG 359 (988)
Q Consensus 286 g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~ 359 (988)
.+++..+.+..++..+|+.++.+.+.+| ++.|-+ ....++|+..+.+.--.+++++..++..+.+
T Consensus 388 Ts~e~~~~a~~~~~~~Gk~pi~v~D~pG------fi~nRi---l~~~~nEA~~ll~eGvas~~dID~a~~~g~G 452 (503)
T TIGR02279 388 NPDSATRKAIYYLQQAGKKVLQIADYPG------LLILRT---VAMLANEAADAVLQGVASAQDIDTAMRLGVN 452 (503)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCccc------HHHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 5789999999999999999888633345 233322 3456899999998876789999888776554
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.21 Score=56.12 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=51.7
Q ss_pred CeEEEEccchHHHHHHHHHHhC------C--Ce-EEEEeCChhHH-------HHH---HhcC-C--cccC--CHHHHh-c
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS------N--FT-VIGYDVYRPTL-------TKF---QNVG-G--LIAN--SPAEAA-K 201 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~------G--~~-V~v~dr~~~~~-------~~l---~~~G-~--~~~~--s~~e~~-~ 201 (988)
|||++||+|++|+.+++.|.++ | .+ |.++|++.... +++ .+.| . ...+ +..+.. .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 4899999999999999999873 3 44 44557654221 111 1212 1 0112 444443 3
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
++|+++-|.|+...-...+ .-+.+.+..|.-||..+.
T Consensus 81 ~~DVvVE~t~~~~~g~~~~---~~~~~aL~~G~hVVTaNK 117 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREK---NLYINAFEHGIDVVTANK 117 (326)
T ss_pred CCCEEEECCCCCCcCchHH---HHHHHHHHCCCEEEcCCH
Confidence 6789999987532101111 122445667777775553
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.64 Score=51.82 Aligned_cols=137 Identities=21% Similarity=0.318 Sum_probs=73.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhC--------CCeEEE---EeCChhHHHHHHhcC-CcccCCH-----HHHh--ccCcEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS--------NFTVIG---YDVYRPTLTKFQNVG-GLIANSP-----AEAA--KDVGVL 206 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~--------G~~V~v---~dr~~~~~~~l~~~G-~~~~~s~-----~e~~--~~aDvV 206 (988)
.++|+++|+|.+|+.+++.|.++ |.++.+ .||+......+.-.+ ....+++ .+.+ .+.|+|
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDVV 82 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCEE
Confidence 46999999999999999999875 334333 356554443111111 1223333 3443 355788
Q ss_pred EEEcCC-hHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHH---HHHHHHHhcCCCce-EecCcccCCcccccCCCeE
Q 001973 207 VIMVTN-EAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVS---QLERRLQFEGKDLK-LVDAPVSGGVKRASMGELT 281 (988)
Q Consensus 207 ~l~vp~-~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~---~l~~~l~~~~~g~~-~ldapv~g~~~~a~~g~l~ 281 (988)
+-+++. ....+. + +.+...+..|+-||. ..+...+. ++.+...+ .|.. +.++.|.||.
T Consensus 83 ve~~~~d~~~~~~-~---~~~~~al~~GkhVVT--aNK~~lA~~~~el~~~A~~--~g~~l~yEAtV~gGi--------- 145 (333)
T COG0460 83 VELVGGDVEPAEP-A---DLYLKALENGKHVVT--ANKALLALHYHELREAAEK--NGVKLLYEATVGGGI--------- 145 (333)
T ss_pred EecCcccCCchhh-H---HHHHHHHHcCCeEEC--CCchHhHhhHHHHHHHHHH--hCCeEEEEeeeccCc---------
Confidence 888776 222332 2 234566777877773 33333332 34444433 2333 3444444432
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEE
Q 001973 282 IMAAGTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 282 ~~~gg~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
..++.++..|. +.++..+
T Consensus 146 -------PiI~~lr~~l~--g~~I~~i 163 (333)
T COG0460 146 -------PIIKLLRELLA--GDEILSI 163 (333)
T ss_pred -------chHHHHHhhcc--cCceEEE
Confidence 24566666666 5666554
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.43 Score=51.59 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=35.7
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
..++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA 51 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 3468889885 99999999999999999999999987765543
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.53 Score=53.42 Aligned_cols=88 Identities=15% Similarity=0.068 Sum_probs=55.1
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|-|.|. |.+|..+++.|++.|++|++.+|++++.+++.+. ..+.-.+..++..=+.+..+++.++
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~-------l~~~g~~~~~v~~Dv~d~~~v~~~~--- 76 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAE-------IRAAGGEALAVVADVADAEAVQAAA--- 76 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHcCCcEEEEEecCCCHHHHHHHH---
Confidence 3457888875 8999999999999999999999998877655431 1110011122223345556666665
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
+.+.+.+.+=+++|++...
T Consensus 77 ~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 77 DRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHCCCCCEEEECCCc
Confidence 3444444444677776543
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.6 Score=50.71 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=55.2
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
++.+++-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+.. -....++..-+.++..++.++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~-- 71 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF----------GDHVLVVEGDVTSYADNQRAV-- 71 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCcceEEEccCCCHHHHHHHH--
Confidence 34457778875 78999999999999999999999988877665431 011233333445555555555
Q ss_pred ccchhhhCCCCCEEEecCCC
Q 001973 223 DLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~ 242 (988)
+.+.....+=+++|++.+.
T Consensus 72 -~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 72 -DQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred -HHHHHhcCCCCEEEECCCC
Confidence 3343333334567766553
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.13 Score=52.60 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=45.0
Q ss_pred eEEEEccchHHHHHH--HHHHhC----CCeEEEEeCChhHHHHHHh--------cCC----cccCCHHHHhccCcEEEEE
Q 001973 148 RVGFIGLGAMGFGMA--THLLRS----NFTVIGYDVYRPTLTKFQN--------VGG----LIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 148 kIgiIG~G~mG~~lA--~~L~~~----G~~V~v~dr~~~~~~~l~~--------~G~----~~~~s~~e~~~~aDvV~l~ 209 (988)
||+|||.|..-.+.- .-+... +.++..+|+|+++.+.... .|. ..++|..++++++|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 799999998877632 223322 3479999999998875322 232 3588999999999999998
Q ss_pred cCCh
Q 001973 210 VTNE 213 (988)
Q Consensus 210 vp~~ 213 (988)
+--.
T Consensus 81 irvG 84 (183)
T PF02056_consen 81 IRVG 84 (183)
T ss_dssp --TT
T ss_pred eeec
Confidence 8644
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.27 Score=55.69 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=52.9
Q ss_pred CeEEEEccchHHHHHHHHHHh--------CCC--e-EEEEeCCh----------hHHHHHHhcCC---cc-------cCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLR--------SNF--T-VIGYDVYR----------PTLTKFQNVGG---LI-------ANS 195 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~--------~G~--~-V~v~dr~~----------~~~~~l~~~G~---~~-------~~s 195 (988)
++|+|+|+|++|+.+++.|.+ .|. + +.+.|++. ++..+..+.+. .+ ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 699999999999999999887 463 3 33336442 22222222211 01 115
Q ss_pred HHHHh--ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 196 PAEAA--KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 196 ~~e~~--~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
+.+.+ .++|+|+-+.+... ...++ ...+..|.-||..++.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~-a~~~~------~~al~~G~~VVtanK~ 124 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKN-AHEWH------LEALKEGKSVVTSNKP 124 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHH-HHHHH------HHHHhhCCcEEECCHH
Confidence 66766 47899998886543 44443 3445567777766653
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.32 Score=54.63 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=28.6
Q ss_pred EEEEccchHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHH
Q 001973 149 VGFIGLGAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQ 186 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~ 186 (988)
|||+|+|.+|...++.+.+. +.+|. +.|.+++....+.
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA 40 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRA 40 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHH
Confidence 69999999999999998754 45654 4577777554444
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.24 Score=54.68 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=37.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~ 187 (988)
+++.|+|+|-.|.+++..|++.|. +|+++||+.++.+.+.+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 479999999999999999999995 79999999999988865
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.3 Score=53.60 Aligned_cols=75 Identities=25% Similarity=0.181 Sum_probs=60.7
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|.|||-+ .+|.+++..|.++|..|++++.. +.++.+.+++||+|+.+++.+..+.
T Consensus 159 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~------ 218 (294)
T PRK14187 159 SGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA--------------TRDLADYCSKADILVAAVGIPNFVK------ 218 (294)
T ss_pred CCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC------
Confidence 34699999976 57999999999999999998743 3467788999999999999876332
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||....
T Consensus 219 ---~~~ik~gaiVIDVGin 234 (294)
T PRK14187 219 ---YSWIKKGAIVIDVGIN 234 (294)
T ss_pred ---HHHcCCCCEEEEeccc
Confidence 2356799999998765
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.48 Score=50.62 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=32.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKF 185 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l 185 (988)
..+|.|||+|.+|+.+|.+|++.|. +++++|.+.-....+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL 61 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNL 61 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCccc
Confidence 3599999999999999999999996 799998775333333
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.59 Score=55.22 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=54.2
Q ss_pred CCeEEEEcc----chHHHHHHHHHHhCCCe--EEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 146 VTRVGFIGL----GAMGFGMATHLLRSNFT--VIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 146 ~~kIgiIG~----G~mG~~lA~~L~~~G~~--V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..+|+|||. |.+|..+.++|.+.||+ |+..|...+. -.|.+...++.|+-...|++++++|... +.++
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~~~-~~~~ 80 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPAKY-VPQV 80 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEecCHHH-HHHH
Confidence 358999999 88999999999999984 6555544332 2478888899998888999999999765 4444
Q ss_pred H
Q 001973 220 L 220 (988)
Q Consensus 220 l 220 (988)
+
T Consensus 81 l 81 (447)
T TIGR02717 81 V 81 (447)
T ss_pred H
Confidence 4
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.31 Score=53.34 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=60.2
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+ .+|.+++..|.+.|..|++++.. +.++.+..++||+|+.++..+..+.
T Consensus 158 ~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~~i~------ 217 (288)
T PRK14171 158 TGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPLKLT------ 217 (288)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCCccC------
Confidence 34799999976 57999999999999999988632 3467788899999999999776332
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 218 ---~~~vk~GavVIDvGin 233 (288)
T PRK14171 218 ---AEYFNPESIVIDVGIN 233 (288)
T ss_pred ---HHHcCCCCEEEEeecc
Confidence 2457799999998765
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.65 Score=50.97 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=54.7
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
+++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+... .....+-.-+.++..+...+ +
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~----------~~~~~~~~D~~d~~~~~~~~---~ 70 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP----------DRALARLLDVTDFDAIDAVV---A 70 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC----------CCeeEEEccCCCHHHHHHHH---H
Confidence 357888875 899999999999999999999999988776654310 11223333445555555555 3
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
++.+...+=+++|++...
T Consensus 71 ~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 71 DAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHhCCCCEEEECCCc
Confidence 443333334667776543
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.31 Score=53.31 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=60.1
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..++|.|||-+ .+|.++|..|.+.|..|++++.. +.++.+.+++||+||.+++.+..+.
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~i~------ 216 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKLIT------ 216 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCcCC------
Confidence 34799999865 58999999999999999998642 3467788999999999998876221
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 217 ---~~~ik~gavVIDvGi~ 232 (284)
T PRK14190 217 ---ADMVKEGAVVIDVGVN 232 (284)
T ss_pred ---HHHcCCCCEEEEeecc
Confidence 2456899999998765
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.26 Score=54.70 Aligned_cols=65 Identities=22% Similarity=0.164 Sum_probs=50.5
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHH---HHhc-C-----------CcccCCHHHHhccCcEEEE
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTK---FQNV-G-----------GLIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~---l~~~-G-----------~~~~~s~~e~~~~aDvV~l 208 (988)
..++|.|-| .|.+|+.+...|.++||.|.+.-|+++.-+. |.+. | +.-.++..+++++||.||=
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 457899997 4899999999999999999999999886322 3332 1 1235678899999999884
Q ss_pred E
Q 001973 209 M 209 (988)
Q Consensus 209 ~ 209 (988)
+
T Consensus 85 ~ 85 (327)
T KOG1502|consen 85 T 85 (327)
T ss_pred e
Confidence 4
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.99 Score=56.30 Aligned_cols=115 Identities=10% Similarity=0.143 Sum_probs=80.3
Q ss_pred EEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCcccc--------c
Q 001973 206 LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKRA--------S 276 (988)
Q Consensus 206 V~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~a--------~ 276 (988)
||+|+|-.. +.+++ +++.+.++++++|.|.++++....+.+.+.+.. ....|+.+ |+.|....- -
T Consensus 1 vila~Pv~~-~~~~~---~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~--~~~~fvg~HPMaG~e~~G~~~a~~~Lf 74 (673)
T PRK11861 1 VLLAAPVAQ-TGPLL---ARIAPFLDASTIVTDAGSTKSDVVAAARAALGA--RIGQFVPGHPIAGRESSGVDAALADLY 74 (673)
T ss_pred CEEEcCHHH-HHHHH---HHHhhhCCCCcEEEecCcccHHHHHHHHHhccc--cCCeEEecCCcCcCcchhhhhhChhHh
Confidence 689999755 55666 578888999999999999998777776665542 12456665 666664332 2
Q ss_pred CCCeEEEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH
Q 001973 277 MGELTIMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327 (988)
Q Consensus 277 ~g~l~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~ 327 (988)
.|...+++- .+.+.++.++++++.+|.+++.+ .+-.+-..+-++..+-..
T Consensus 75 ~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~-~~~~HD~~~A~iShlpH~ 127 (673)
T PRK11861 75 VGRNVVLCALPENAPDALARVEAMWRAARADVRAM-SAEQHDRVFAAVSHLPHV 127 (673)
T ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEC-CHHHHHHHHHHHhhHHHH
Confidence 456566663 35778999999999999998875 555555555555554443
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.66 Score=51.27 Aligned_cols=111 Identities=21% Similarity=0.174 Sum_probs=72.9
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhH-HHHHHhcCCcccCCHHHHhcc--CcEEEEEcCChHHHHHH
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPT-LTKFQNVGGLIANSPAEAAKD--VGVLVIMVTNEAQAESV 219 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~G~~~~~s~~e~~~~--aDvV~l~vp~~~~~~~v 219 (988)
.++.||.|.|. |.+|..+..+|.+.|++ .+|=.+|.. .+++ .|.+...++.|+-+. .|+.++++|.+.. .++
T Consensus 6 ~~~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v-~~~ 81 (291)
T PRK05678 6 NKDTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPPPFA-ADA 81 (291)
T ss_pred cCCCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCHHHH-HHH
Confidence 34579999998 88999999999999997 666555541 1111 378888999998887 8999999998663 333
Q ss_pred HccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 220 LYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
+ ++... ..-+..+|..+.......+++.+...+ .|++++
T Consensus 82 l---~e~~~-~gvk~avI~s~Gf~~~~~~~l~~~a~~--~girvl 120 (291)
T PRK05678 82 I---LEAID-AGIDLIVCITEGIPVLDMLEVKAYLER--KKTRLI 120 (291)
T ss_pred H---HHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH--cCCEEE
Confidence 3 23332 222344555555544334466666655 455555
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.8 Score=50.07 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=56.0
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|.|. |.+|..++..|++.|++|++.+|++++.+.+...+ ..++..-+.+...++.++ +
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~-------------~~~~~~Dv~~~~~~~~~~---~ 66 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLG-------------VHPLSLDVTDEASIKAAV---D 66 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCC-------------CeEEEeeCCCHHHHHHHH---H
Confidence 357888885 89999999999999999999999988776654322 334444555666666665 3
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
.+.+...+=+++|++...
T Consensus 67 ~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 67 TIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHhcCCCCEEEECCCc
Confidence 444433334677776653
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.29 Score=51.80 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=74.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC---CeEEEEeCChhHHHHHHhc----------CCcccCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN---FTVIGYDVYRPTLTKFQNV----------GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~----------G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
.--..++|.|......-....+.- .+|.+|+|+++.++++.+. .+..+.+..+++..+|+|+.|+++
T Consensus 138 S~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls 217 (333)
T KOG3007|consen 138 SCVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS 217 (333)
T ss_pred ceEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc
Confidence 346899999999988777666543 4799999999998887762 234578899999999999999987
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
. +..++ .+.++||+-|=-..+..|.-- +.-..+-+ .+.-|+|.
T Consensus 218 t---ePilf-----gewlkpgthIdlVGsf~p~mh-EcDdelIq--~a~vfVDs 260 (333)
T KOG3007|consen 218 T---EPILF-----GEWLKPGTHIDLVGSFKPVMH-ECDDELIQ--SACVFVDS 260 (333)
T ss_pred C---Cceee-----eeeecCCceEeeeccCCchHH-HHhHHHhh--hheEEEec
Confidence 3 34443 345777754433455555543 34333333 24556654
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.34 Score=60.23 Aligned_cols=35 Identities=37% Similarity=0.473 Sum_probs=32.2
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
+.++|.|||.|..|...|..|++.||+|++|++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34699999999999999999999999999999864
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.36 Score=52.66 Aligned_cols=75 Identities=20% Similarity=0.137 Sum_probs=59.9
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-+ .+|.+++..|.++|..|++++.. +.++.+..++||+|+.+++.+.-+.
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~i~------ 215 (282)
T PRK14182 156 KGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAELVK------ 215 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC------
Confidence 34799999976 57999999999999999998643 3467788899999999998765322
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 216 ---~~~ik~gaiVIDvGin 231 (282)
T PRK14182 216 ---GAWVKEGAVVIDVGMN 231 (282)
T ss_pred ---HHHcCCCCEEEEeece
Confidence 2457899999998765
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.59 Score=50.54 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=53.7
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEE--EEEcCChHHHHHHHcc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVL--VIMVTNEAQAESVLYG 222 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV--~l~vp~~~~~~~vl~~ 222 (988)
.+++-|.|. |.+|..++..|+++|++|.+.+|+++..+++.+. ..+. .+++. ..-+.+...++.++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~--~~~~~~~~~Dl~~~~~~~~~~-- 75 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE-------INKA--GGKAIGVAMDVTNEDAVNAGI-- 75 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH-------HHhc--CceEEEEECCCCCHHHHHHHH--
Confidence 457888887 9999999999999999999999998776655432 0000 12222 22234445555554
Q ss_pred ccchhhhCCCCCEEEecCCC
Q 001973 223 DLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~ 242 (988)
+.+.....+-..+|++...
T Consensus 76 -~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 76 -DKVAERFGSVDILVSNAGI 94 (262)
T ss_pred -HHHHHHcCCCCEEEECCcc
Confidence 3333333444677777654
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.17 Score=56.40 Aligned_cols=60 Identities=23% Similarity=0.170 Sum_probs=42.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC-Ccc-cC---CHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG-GLI-AN---SPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G-~~~-~~---s~~e~~~~aDvV 206 (988)
++|||||.|..|..|+..-.+.|++|.+.|.+++.-..-.... +.. .+ .+.++++.||+|
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DVi 66 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVI 66 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEE
Confidence 6899999999999999999999999999998876543322211 111 12 344566677765
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.31 Score=52.67 Aligned_cols=75 Identities=21% Similarity=0.214 Sum_probs=61.2
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||-++ +|.+|+..|...++.|++.+.. +.++.+..+++|+++.++.-+.-+.
T Consensus 155 ~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~--------------T~~l~~~~k~ADIvv~AvG~p~~i~------ 214 (283)
T COG0190 155 RGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR--------------TKDLASITKNADIVVVAVGKPHFIK------ 214 (283)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC--------------CCCHHHHhhhCCEEEEecCCccccc------
Confidence 347999999886 6999999999999999999754 3567788899999999998766332
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.++||....
T Consensus 215 ---~d~vk~gavVIDVGin 230 (283)
T COG0190 215 ---ADMVKPGAVVIDVGIN 230 (283)
T ss_pred ---cccccCCCEEEecCCc
Confidence 2456789999998765
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.33 Score=52.54 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=35.4
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKF 185 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 185 (988)
+|+|.|+|. |.+|..++..|.++||+|++..|++++...+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 469999995 9999999999999999999999998876544
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=1.3 Score=52.47 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=49.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH--HHHHHh--cCCccc--CCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT--LTKFQN--VGGLIA--NSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~--~G~~~~--~s~~e~~~~aDvV~l~vp~ 212 (988)
.++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+++.+ .|+... ....+...++|+|+.+..-
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi 77 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGI 77 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCC
Confidence 468999999999999999999999999999976543 345554 365542 1123344689999987543
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.39 Score=52.50 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=59.8
Q ss_pred CCeEEEEccc-hHHHHHHHHHHh--CCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLR--SNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
.+++.|||-+ .+|.+++..|.+ .+..|+++... +.++.+.+++||+|+.+++.+..+.
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~i~----- 218 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHLVT----- 218 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCccC-----
Confidence 4799999975 589999999998 68889988643 4568888999999999999876322
Q ss_pred ccchhhhCCCCCEEEecCCC
Q 001973 223 DLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 219 ----~~~ik~GavVIDvGin 234 (284)
T PRK14193 219 ----ADMVKPGAAVLDVGVS 234 (284)
T ss_pred ----HHHcCCCCEEEEcccc
Confidence 3457899999998865
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.15 Score=59.21 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=35.0
Q ss_pred hcCCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 141 AKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 141 m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
|+++.+.+|.|||.|..|.++|..|++.|++|+++++.+
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 455566789999999999999999999999999999875
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.37 Score=53.83 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=59.9
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||-+ .+|.++|..|.++|..|+++... +.++.+..++||+||.+++.+.-+.
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~--------------T~nl~~~~~~ADIvIsAvGkp~~v~------- 272 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF--------------TKDPEQITRKADIVIAAAGIPNLVR------- 272 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC--------------CCCHHHHHhhCCEEEEccCCcCccC-------
Confidence 4789999976 47999999999999999988643 3467788999999999999876322
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 273 --~d~vk~GavVIDVGin 288 (345)
T PLN02897 273 --GSWLKPGAVVIDVGTT 288 (345)
T ss_pred --HHHcCCCCEEEEcccc
Confidence 2457899999998865
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.86 Score=50.03 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=37.0
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV 188 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 188 (988)
++|-|.|. |.+|..+|+.|++.|++|++.+|+++..+.+.+.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 47888887 9999999999999999999999999888776643
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.41 Score=52.36 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhC----CCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRS----NFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..+++.|||-+ .+|.++|..|.+. +..|++++.. +.++.+.++.||+|+.+++.+.-+.
T Consensus 152 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------------T~~l~~~~~~ADIvV~AvG~p~~i~-- 215 (287)
T PRK14181 152 HGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------------SENLTEILKTADIIIAAIGVPLFIK-- 215 (287)
T ss_pred CCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC--
Confidence 34799999976 5799999999988 7889988642 3467888999999999999876322
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 216 -------~~~ik~GavVIDvGin 231 (287)
T PRK14181 216 -------EEMIAEKAVIVDVGTS 231 (287)
T ss_pred -------HHHcCCCCEEEEeccc
Confidence 3457899999998865
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.40 E-value=2 Score=45.10 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=73.7
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh-hHHHHHHhcCC-cc---cCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR-PTLTKFQNVGG-LI---ANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~G~-~~---~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..++|.|||.|.+|..=++.|.+.|-+|++|..+. +....+...+- .. .-++.+ ...+++||.+++++.--+.+
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ln~~i 89 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEELNERI 89 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHHHHHHH
Confidence 34699999999999999999999999999997665 45555554432 21 112233 44599999999997643333
Q ss_pred Hcccc----------------chhh-hCCCCCEEEecCCCC--HHHHHHHHHHHHh
Q 001973 220 LYGDL----------------GAVS-ALSSGASIILSSTVS--PGFVSQLERRLQF 256 (988)
Q Consensus 220 l~~~~----------------~i~~-~l~~g~ivId~st~~--p~~~~~l~~~l~~ 256 (988)
....+ -+.+ ....+.+.|-.||.+ |..++.+-+.+.+
T Consensus 90 ~~~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~ 145 (210)
T COG1648 90 AKAARERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGKSPVLARLLREKIEA 145 (210)
T ss_pred HHHHHHhCCceeccCCcccCceecceeeccCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 21000 0111 234566667666654 8888888887765
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.64 Score=50.21 Aligned_cols=112 Identities=17% Similarity=0.192 Sum_probs=63.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~~ 215 (988)
.||.|||+|..|+.++.+|+..|. +++++|.+.-....+..+ |...+....+-+. ..++-+.+.+..-.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~ 112 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLD 112 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 599999999999999999999995 799998875443344322 2222222222221 22343444332111
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcc
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPV 268 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv 268 (988)
-+ .+...+..-++||+++.. +..-..+.+.... .+..++.+.+
T Consensus 113 ~~-------~~~~~~~~~DiVi~~~D~-~~~r~~ln~~~~~--~~ip~v~~~~ 155 (245)
T PRK05690 113 DD-------ELAALIAGHDLVLDCTDN-VATRNQLNRACFA--AKKPLVSGAA 155 (245)
T ss_pred HH-------HHHHHHhcCCEEEecCCC-HHHHHHHHHHHHH--hCCEEEEeee
Confidence 11 111223455788887754 4544455665554 4566666543
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.72 Score=49.69 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=55.2
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|-|.| .|.+|..+++.|++.|++|.+.+|+++..+.+...- ...-....++..-+.++..++.++ +
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~Dl~~~~~~~~~~---~ 73 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEAL-------QKAGGKAIGVAMDVTDEEAINAGI---D 73 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH-------HhcCCcEEEEEcCCCCHHHHHHHH---H
Confidence 35899998 699999999999999999999999988776543310 000011223333445556666655 3
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+...+-.++|++..
T Consensus 74 ~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 74 YAVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 44444444466776654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.81 Score=50.84 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=55.2
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|-|.|. |.+|..+|..|+++|++|++.+|+.++.+++.+.- .+....+.++-.-+.+...+..++ +
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l-------~~~~~~~~~~~~Dl~d~~~v~~~~---~ 109 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRI-------TRAGGDAMAVPCDLSDLDAVDALV---A 109 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-------HhcCCcEEEEEccCCCHHHHHHHH---H
Confidence 467888886 99999999999999999999999988776654320 000011222223344555566665 3
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
.+.+...+=+++|++...
T Consensus 110 ~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 110 DVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 444444444677776543
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.81 Score=51.83 Aligned_cols=86 Identities=15% Similarity=0.029 Sum_probs=55.4
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|-|.|. |-+|..++..|++.|++|++.+|++++.+++.+. ..+.-.+..++..=+.++.+++.++ +
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~-------~~~~g~~~~~~~~Dv~d~~~v~~~~---~ 76 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEE-------CRALGAEVLVVPTDVTDADQVKALA---T 76 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEeeCCCHHHHHHHH---H
Confidence 457888887 8999999999999999999999999887665432 1110011222333355666666665 3
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+...+=+++|++..
T Consensus 77 ~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 77 QAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 44333333467777664
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.17 Score=58.66 Aligned_cols=37 Identities=24% Similarity=0.121 Sum_probs=33.4
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
|+.++|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3457999999999999999999999999999998753
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.86 Score=49.52 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=52.9
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
+.+++-|.|. |.+|..++..|++.|++|++.+|+++..+++.+.- -..+.++-.-+.+..+++.++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~--- 71 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL----------GERARFIATDITDDAAIERAV--- 71 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCeeEEEEecCCCHHHHHHHH---
Confidence 3457888875 99999999999999999999999988766654320 011223333344555555555
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+.+.+...+=+++|++..
T Consensus 72 ~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 72 ATVVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHHHhCCCCEEEECCC
Confidence 333333333355665543
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.77 Score=49.18 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=35.6
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
.++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 468989985 99999999999999999999999988766543
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.43 Score=59.14 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=32.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
.+||.|||.|..|...|..|++.||+|++|++.+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4699999999999999999999999999999876
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.71 Score=48.16 Aligned_cols=113 Identities=15% Similarity=0.136 Sum_probs=62.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc----------CCcccCCHHHHhc--cCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV----------GGLIANSPAEAAK--DVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~----------G~~~~~s~~e~~~--~aDvV~l~vp~~ 213 (988)
.+|.|||+|.+|+.++++|+..|. +++++|.+.-....+... |...+....+.++ ..++-+.+....
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~ 99 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED 99 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecc
Confidence 589999999999999999999995 699999775333333221 1111111111111 234444443321
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
.. ... +.....+.+-++||++.. .+.....+.+...+ .++.++.+-
T Consensus 100 ~~--~~~---~~~~~~~~~~dvVi~~~d-~~~~~~~ln~~c~~--~~ip~i~~~ 145 (198)
T cd01485 100 SL--SND---SNIEEYLQKFTLVIATEE-NYERTAKVNDVCRK--HHIPFISCA 145 (198)
T ss_pred cc--cch---hhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH--cCCCEEEEE
Confidence 10 000 011122334578887744 36666677777666 455565543
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.99 Score=47.85 Aligned_cols=85 Identities=13% Similarity=0.018 Sum_probs=55.1
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|-|.|. |.+|..+++.|+++|++|++.+|++++..+..+. . . ...+.++..-+.+..+++.++ +
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-~------~--~~~~~~~~~D~~~~~~~~~~~---~ 74 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPG-V------P--ADALRIGGIDLVDPQAARRAV---D 74 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHH-H------h--hcCceEEEeecCCHHHHHHHH---H
Confidence 468999975 9999999999999999999999988765443221 0 0 012344445556666666665 3
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
++.+...+-+.|+++...
T Consensus 75 ~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 75 EVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHhCCcCEEEECCcc
Confidence 443333344566666543
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.7 Score=52.80 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=40.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeC---ChhHHHHHHhcCCcc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDV---YRPTLTKFQNVGGLI 192 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr---~~~~~~~l~~~G~~~ 192 (988)
..+|.|+|+|.+|...+..+...|.+|++.++ ++++.+.+.+.|+..
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 35899999999999999988889999999998 678888777777654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.4 Score=48.68 Aligned_cols=147 Identities=26% Similarity=0.291 Sum_probs=78.8
Q ss_pred CeEEEEccchHHHHHHHHHHh-CCCeEEE-EeCChhHHHHHHh-cCCc--------ccCCHHHHhccCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLR-SNFTVIG-YDVYRPTLTKFQN-VGGL--------IANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~-~G~~V~v-~dr~~~~~~~l~~-~G~~--------~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
-|||+||.|.||+.|....++ .|.+|.. -||+.+.+.+.-. .|.. -.+..+++++.--+.++ + +
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT---~--D 92 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVT---D--D 92 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEe---c--c
Confidence 489999999999999999886 5787555 4899888766544 2321 12334445544444332 1 1
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe--cCcccCCccccc----CCCeEEEEeCC-H
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV--DAPVSGGVKRAS----MGELTIMAAGT-E 288 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l--dapv~g~~~~a~----~g~l~~~~gg~-~ 288 (988)
.+.++ +...=..|||.+.. |....++.-..-.+++.+-.+ .+-++-||--.. .|.......|| +
T Consensus 93 ~~~i~--------~~~~IdvIIdATG~-p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP 163 (438)
T COG4091 93 AELII--------ANDLIDVIIDATGV-PEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEP 163 (438)
T ss_pred hhhhh--------cCCcceEEEEcCCC-cchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCc
Confidence 22222 11112456665554 554444432222322332222 333444443321 23333333344 4
Q ss_pred HHHHHHHHHHHhcCCeEEE
Q 001973 289 ESLKSTGSVLSALSEKLYV 307 (988)
Q Consensus 289 ~~~~~~~~ll~~~g~~v~~ 307 (988)
...-++-++.+++|..++.
T Consensus 164 ~~~mEL~efa~a~G~evv~ 182 (438)
T COG4091 164 SSCMELYEFASALGFEVVS 182 (438)
T ss_pred HHHHHHHHHHHhcCCeEEe
Confidence 5666777888888887765
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.55 Score=55.34 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=64.0
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH-HH----HHH-hcCCcccC-CHHHHhccCcEEEEEcCCh---HHHH
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT-LT----KFQ-NVGGLIAN-SPAEAAKDVGVLVIMVTNE---AQAE 217 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~----~l~-~~G~~~~~-s~~e~~~~aDvV~l~vp~~---~~~~ 217 (988)
||.|||+|..|.++|+.|.+.|++|+++|..+.. .. .+. ..|+.+.. ...+.+.++|+|+.+..-+ ..+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 5899999999999999999999999999976442 11 122 24665421 1244567899888765222 2232
Q ss_pred HHHc------cccchhhhCCCCCEEEecCCCCHH-HHHHHHHHHHh
Q 001973 218 SVLY------GDLGAVSALSSGASIILSSTVSPG-FVSQLERRLQF 256 (988)
Q Consensus 218 ~vl~------~~~~i~~~l~~g~ivId~st~~p~-~~~~l~~~l~~ 256 (988)
.... ..-+++..+.+.++|..+.|..-. ++.-++..+..
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 126 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKA 126 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 2210 011222222244455555555444 55555666665
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.86 Score=49.17 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=35.2
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
+.+++-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLV 47 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3457888875 78999999999999999999999988776654
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.56 Score=55.83 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=31.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
..+|.|||.|..|...|..|++.|++|++|++.+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4689999999999999999999999999999875
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.1 Score=46.61 Aligned_cols=112 Identities=19% Similarity=0.175 Sum_probs=62.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~~ 215 (988)
.||.|||+|.+|+.++++|+..|. +++++|.+.-....+... |-..+....+.++ ..++-+.+.+..-.
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~~ 101 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDIS 101 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 589999999999999999999996 699999775333333321 2111111122121 23444444332110
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCccc
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVS 269 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~ 269 (988)
+ .....+..-++||+++. .+..-..+.+.+.+ .++.++.+-+.
T Consensus 102 -~-------~~~~~~~~~dvVi~~~~-~~~~~~~ln~~c~~--~~ip~i~~~~~ 144 (197)
T cd01492 102 -E-------KPEEFFSQFDVVVATEL-SRAELVKINELCRK--LGVKFYATGVH 144 (197)
T ss_pred -c-------cHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH--cCCCEEEEEec
Confidence 0 00111233467776654 46666677777665 45666655443
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.58 Score=55.62 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=47.7
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH-H----HHHHhcCCcccC--CHH-----HHhccCcEEEEEcCC
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT-L----TKFQNVGGLIAN--SPA-----EAAKDVGVLVIMVTN 212 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~-~----~~l~~~G~~~~~--s~~-----e~~~~aDvV~l~vp~ 212 (988)
||.|||+|..|.+.|+.|.+.|++|+++|+++.. . +.+.+.|+++.. ... +...+.|+|+.+..-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi 78 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGI 78 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCC
Confidence 7999999999999999999999999999976532 2 346666765521 111 346678988885443
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.36 Score=56.40 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=49.7
Q ss_pred CeEEEEccchH-HHHHHHHHHhC-----CCeEEEEeCChhHHHHHHh--------cC----CcccCCHHHHhccCcEEEE
Q 001973 147 TRVGFIGLGAM-GFGMATHLLRS-----NFTVIGYDVYRPTLTKFQN--------VG----GLIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 147 ~kIgiIG~G~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~~--------~G----~~~~~s~~e~~~~aDvV~l 208 (988)
|||+|||.|.. .-.+...|++. +.+|..+|+++++.+.... .| +..++|.++++++||+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 59999999984 33455666543 3689999999988765322 23 3458899999999999998
Q ss_pred EcCCh
Q 001973 209 MVTNE 213 (988)
Q Consensus 209 ~vp~~ 213 (988)
..--.
T Consensus 81 ~irvG 85 (425)
T cd05197 81 QFRVG 85 (425)
T ss_pred eeecC
Confidence 87543
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.84 Score=53.89 Aligned_cols=65 Identities=20% Similarity=0.132 Sum_probs=46.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH--HHHHHhcCCccc--CCHHHHhccCcEEEEEc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT--LTKFQNVGGLIA--NSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~G~~~~--~s~~e~~~~aDvV~l~v 210 (988)
..++|.|+|.|..|.+.++.|.+.|++|+++|..+.. .+.+. .|+... ....+.+++.|+|+.+-
T Consensus 5 ~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~sp 73 (438)
T PRK03806 5 QGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASP 73 (438)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECC
Confidence 3468999999999999999999999999999975432 23453 366542 22334456788766554
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.76 Score=49.24 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=35.0
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF 185 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 185 (988)
+.++|.|.| .|.+|..+++.|+++|++|++.+|++++...+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 346899998 79999999999999999999999997665443
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.44 Score=52.57 Aligned_cols=65 Identities=8% Similarity=0.011 Sum_probs=45.9
Q ss_pred eEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCC----cccCCHHHHh------cc-CcEEEEEcCC
Q 001973 148 RVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGG----LIANSPAEAA------KD-VGVLVIMVTN 212 (988)
Q Consensus 148 kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~----~~~~s~~e~~------~~-aDvV~l~vp~ 212 (988)
+|.|+|. |.+|..++..|.+.||+|++..|++++.....-... .-.+++.+++ +. +|.+|++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 4788887 999999999999999999999999876432110011 1123444555 45 8999888764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=1 Score=48.36 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=53.6
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|+|-|+|. |.+|..++..|++.|++|++.+|++++.+.+...- -.+..++-.-+.+...++.++ +.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~i~~~~---~~ 67 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL----------GDNLYIAQLDVRNRAAIEEML---AS 67 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------ccceEEEEecCCCHHHHHHHH---HH
Confidence 47889985 99999999999999999999999988776654320 012233333345555566655 33
Q ss_pred hhhhCCCCCEEEecCC
Q 001973 226 AVSALSSGASIILSST 241 (988)
Q Consensus 226 i~~~l~~g~ivId~st 241 (988)
+.+...+-+.+|++..
T Consensus 68 ~~~~~~~id~vi~~ag 83 (248)
T PRK10538 68 LPAEWRNIDVLVNNAG 83 (248)
T ss_pred HHHHcCCCCEEEECCC
Confidence 4333334456666554
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.3 Score=42.70 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=30.8
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
||.|||.|..|.-+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 689999999999999999999999999998764
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.42 Score=57.28 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=35.9
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
.++|.|.|. |.+|..+++.|++.|++|++++|+.++.+.+.
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 357888886 99999999999999999999999998876654
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.25 Score=56.15 Aligned_cols=88 Identities=16% Similarity=0.296 Sum_probs=53.0
Q ss_pred CeEEEEcc-chHHHHHHH-HHHhCCCe---EEEEeCChh--HHHHHHhcCCccc--CCHHHHhccCcEEEEEcCChHHHH
Q 001973 147 TRVGFIGL-GAMGFGMAT-HLLRSNFT---VIGYDVYRP--TLTKFQNVGGLIA--NSPAEAAKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~-~L~~~G~~---V~v~dr~~~--~~~~l~~~G~~~~--~s~~e~~~~aDvV~l~vp~~~~~~ 217 (988)
++|||||+ |++|..|.+ .|.+..++ +..+..... +.-.+........ .+. +...++|++|+|+|+.. .+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~a~~~~~-s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIITCQGGDY-TN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCCh-hHhcCCCEEEECCCHHH-HH
Confidence 69999997 999999998 55556666 666543211 1111111111122 223 34578999999999865 33
Q ss_pred HHHccccchhhhCCCC--CEEEecCCC
Q 001973 218 SVLYGDLGAVSALSSG--ASIILSSTV 242 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g--~ivId~st~ 242 (988)
.+. ..+ ...| .+|||.|+.
T Consensus 80 ~~~---~~~---~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 80 EVY---PKL---RAAGWQGYWIDAAST 100 (369)
T ss_pred HHH---HHH---HhCCCCeEEEECChH
Confidence 333 122 2356 579999874
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.84 Score=49.25 Aligned_cols=42 Identities=17% Similarity=0.068 Sum_probs=35.7
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
+.+++-|.|. |.+|..++..|++.|++|.+.+|++++.+.+.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 50 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLA 50 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 3457888886 89999999999999999999999988776654
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.48 Score=52.44 Aligned_cols=41 Identities=7% Similarity=0.137 Sum_probs=35.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh---hHHHHHHh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR---PTLTKFQN 187 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~---~~~~~l~~ 187 (988)
+++.|+|+|-.+.+++..|+..|. +|+++||++ ++.+.+.+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~ 169 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQ 169 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHH
Confidence 479999999999999999999885 799999995 47666654
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.2 Score=58.11 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=32.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
.++|.|||.|..|..+|..|++.|++|++++++++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 46899999999999999999999999999999763
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.74 Score=50.23 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=58.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcccCCHHH-------Hh-----ccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIANSPAE-------AA-----KDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~~s~~e-------~~-----~~aDvV~l~vp~~ 213 (988)
.+++|+|+|.+|.+.+..-..+|- ++++.|.|+++.+...+.|++-+-++.+ .+ ...|+-|-|+.+.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~ 273 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNV 273 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCH
Confidence 589999999999999999998884 7999999999999999999865444442 22 1457777777776
Q ss_pred HHHHHHH
Q 001973 214 AQAESVL 220 (988)
Q Consensus 214 ~~~~~vl 220 (988)
..+++.+
T Consensus 274 ~~m~~al 280 (375)
T KOG0022|consen 274 STMRAAL 280 (375)
T ss_pred HHHHHHH
Confidence 6666554
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.68 E-value=1 Score=49.67 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=39.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhHHHHHHhcCCc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFT-VIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~G~~ 191 (988)
.+|.|+|.|.+|...+..+...|.+ |++.++++++.+.+.+.|+.
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 4899999999999999988888986 88889999998888777764
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.2 Score=47.53 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=57.2
Q ss_pred cCCCCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 142 KSNSVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 142 ~~~~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
+.++.+++-|.| .|.+|..++..|+++|+.|.+.+|++++.+.+...- -..+.++-.-+.+...++.++
T Consensus 2 ~~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~ 71 (245)
T PRK12936 2 FDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL----------GERVKIFPANLSDRDEVKALG 71 (245)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----------CCceEEEEccCCCHHHHHHHH
Confidence 333456888888 699999999999999999999999988776654320 011222223344555566655
Q ss_pred ccccchhhhCCCCCEEEecCCC
Q 001973 221 YGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~ 242 (988)
+++.+...+=+.+|++...
T Consensus 72 ---~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 72 ---QKAEADLEGVDILVNNAGI 90 (245)
T ss_pred ---HHHHHHcCCCCEEEECCCC
Confidence 3444444444677777654
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.51 Score=52.97 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=59.8
Q ss_pred CCeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||-+ .+|.++|..|.++|..|+++... +.++.+.+++||+|+.+++.+..+.
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------------T~nl~~~~r~ADIVIsAvGkp~~i~------- 289 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITREADIIISAVGQPNMVR------- 289 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCcCC-------
Confidence 4689999876 57999999999999999998633 3567888999999999999876322
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||....
T Consensus 290 --~d~vK~GAvVIDVGIn 305 (364)
T PLN02616 290 --GSWIKPGAVVIDVGIN 305 (364)
T ss_pred --HHHcCCCCEEEecccc
Confidence 2457899999998765
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.1 Score=50.84 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=39.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~ 191 (988)
.+|.|+|+|.+|......+...|. +|++.++++++.+.+.+.|+.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 589999999999999998888897 699999999999888887764
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.46 Score=52.13 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=59.1
Q ss_pred eEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHH-HHHHcccc
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQA-ESVLYGDL 224 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~-~~vl~~~~ 224 (988)
++.|+|+|-.+.+++..|++.|. +|+++||++++.+.+.+. +.....++ ....+|+||-|+|-...- .+.- ..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~Gm~~~~~~~--~~ 199 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIGMAGGPEAD--KL 199 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccccCCCCccc--cC
Confidence 79999999999999999999996 599999999999888653 21111111 124578888888743210 0000 00
Q ss_pred ch-hhhCCCCCEEEecCCCCH
Q 001973 225 GA-VSALSSGASIILSSTVSP 244 (988)
Q Consensus 225 ~i-~~~l~~g~ivId~st~~p 244 (988)
.+ ...+.++.++.|+.-.++
T Consensus 200 pi~~~~l~~~~~v~D~vY~P~ 220 (272)
T PRK12550 200 AFPEAEIDAASVVFDVVALPA 220 (272)
T ss_pred CCCHHHcCCCCEEEEeecCCc
Confidence 01 123556677777765543
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.21 Score=56.08 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=45.1
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------cCCHHHHhccCcEEEEEc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~v 210 (988)
|+|.|.|. |.+|..++..|++.|++|++.+|+++....+...++.. .+++.++++.+|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 47999985 99999999999999999999999877654333223221 123344556677776654
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.41 E-value=1.2 Score=48.60 Aligned_cols=82 Identities=16% Similarity=-0.013 Sum_probs=53.2
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.+.- ....++..=+.++.+++.++ +
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~---~ 70 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL-----------GLVVGGPLDVTDPASFAAFL---D 70 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----------ccceEEEccCCCHHHHHHHH---H
Confidence 357888876 89999999999999999999999998876654321 01223333344555565555 3
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+...+=.++|++..
T Consensus 71 ~~~~~~~~id~li~~ag 87 (273)
T PRK07825 71 AVEADLGPIDVLVNNAG 87 (273)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 34333333356666544
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.55 Score=58.35 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=32.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
.++|.|||.|..|...|..|++.||+|++|++++.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 46999999999999999999999999999998753
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.41 Score=54.51 Aligned_cols=39 Identities=23% Similarity=0.538 Sum_probs=33.4
Q ss_pred CeEEEEcc-chHHHHHHHHHHhC-CCeEEEEeCChhHHHHH
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRS-NFTVIGYDVYRPTLTKF 185 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l 185 (988)
|+|.|.|. |.+|+.++..|.+. ||+|+++||+.++...+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 68999996 99999999999986 69999999987655444
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.26 E-value=1.1 Score=48.20 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=53.6
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|-|.|. |.+|..+|..|++.|++|++.+|+++..+.+.+.- ...-.....+-.-+.++..++.++ +
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~---~ 74 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEI-------DDLGRRALAVPTDITDEDQCANLV---A 74 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-------HHhCCceEEEecCCCCHHHHHHHH---H
Confidence 357888875 89999999999999999999999987766554321 000012233333345555565555 3
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+...+-+.+|++..
T Consensus 75 ~~~~~~g~~d~vi~~ag 91 (258)
T PRK07890 75 LALERFGRVDALVNNAF 91 (258)
T ss_pred HHHHHcCCccEEEECCc
Confidence 34333333356666654
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.25 Score=57.73 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=31.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
.+|.|||.|.+|.++|..|++.|++|+++|+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999874
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.2 Score=48.21 Aligned_cols=43 Identities=21% Similarity=0.151 Sum_probs=36.7
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
+.++|-|+|. |.+|..++..|+++|++|++.+|+++..+.+.+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4468999975 999999999999999999999999877666543
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.96 Score=52.82 Aligned_cols=110 Identities=11% Similarity=0.080 Sum_probs=67.1
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEE-e----------CChhHHHHHHhc--C----------CcccCCHHHHh-
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGY-D----------VYRPTLTKFQNV--G----------GLIANSPAEAA- 200 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~-d----------r~~~~~~~l~~~--G----------~~~~~s~~e~~- 200 (988)
+.++|+|.|.|++|...|+.|.+.|.+|++. | .+.+.+.+..+. | +... +.++..
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i~~ 309 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSPWS 309 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCccccc
Confidence 3479999999999999999999999998877 8 676665554432 1 1111 223332
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
.+|||++-|-.......+.. ..+.. ++-++|+...+. |- +.+..+.|.+ +|+.|+
T Consensus 310 ~d~DVliPaAl~n~It~~~a---~~i~~--~~akiIvEgAN~-p~-t~~A~~~L~~--rGI~~v 364 (445)
T PRK09414 310 VPCDIALPCATQNELDEEDA---KTLIA--NGVKAVAEGANM-PS-TPEAIEVFLE--AGVLFA 364 (445)
T ss_pred cCCcEEEecCCcCcCCHHHH---HHHHH--cCCeEEEcCCCC-CC-CHHHHHHHHH--CCcEEE
Confidence 37999998876544332222 11211 123455555544 44 4445566666 566665
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.75 Score=52.28 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=30.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~ 179 (988)
.+|+|||+|-.|+.++..|++.|. +++++|.+.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 589999999999999999999996 799998774
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.7 Score=50.79 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=59.2
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhC----CCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRS----NFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..+++.|||-+ .+|.+++..|.++ +..|+++... +.++.+.+++||+|+.+++.+..+.
T Consensus 156 ~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------------T~nl~~~~~~ADIvIsAvGkp~~i~-- 219 (293)
T PRK14185 156 SGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR--------------SKNLKKECLEADIIIAALGQPEFVK-- 219 (293)
T ss_pred CCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC--------------CCCHHHHHhhCCEEEEccCCcCccC--
Confidence 34799999976 5799999999988 5688888532 3467788899999999999877322
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 220 -------~~~vk~gavVIDvGin 235 (293)
T PRK14185 220 -------ADMVKEGAVVIDVGTT 235 (293)
T ss_pred -------HHHcCCCCEEEEecCc
Confidence 2457899999998875
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.26 Score=57.11 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=33.4
Q ss_pred CCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 143 SNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
+++..+|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 34446899999999999999999999999999998753
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.8 Score=47.77 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=73.3
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHH-HHHHhcCCcccCCHHHHhcc--CcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTL-TKFQNVGGLIANSPAEAAKD--VGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~G~~~~~s~~e~~~~--aDvV~l~vp~~~~~~~vl~ 221 (988)
+.||.|.| .|.+|..+-.+|...|++ .+|..+|.+- ++ -.|.+...|..|+.+. .|+.++++|... +.+++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~-v~~~l- 80 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVPAPF-AADAI- 80 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecCHHH-HHHHH-
Confidence 46899999 599999999999999999 7777777631 11 1378889999998876 799999999866 33343
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
++... ..-+..+|..+.......+++.+...+ .|++++
T Consensus 81 --~e~~~-~Gvk~avIis~Gf~e~~~~~l~~~a~~--~giril 118 (286)
T TIGR01019 81 --FEAID-AGIELIVCITEGIPVHDMLKVKRYMEE--SGTRLI 118 (286)
T ss_pred --HHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH--cCCEEE
Confidence 23322 122344454444443334566666655 455555
|
ATP citrate lyases appear to form an outgroup. |
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.91 E-value=1 Score=52.38 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=42.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHh--ccCcEEEEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAA--KDVGVLVIM 209 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~--~~aDvV~l~ 209 (988)
|+|.|+|+|.-|.++|+.|. .|++|+++|..+.... +.+.|+.+. ..+.. +++|+|+.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~--~~~~~~~~~~d~vv~s 61 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL--PSNDFDPNKSDLEIPS 61 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe--cHHHcCcCCCCEEEEC
Confidence 58999999999999999999 9999999996533221 223366553 12223 468987765
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.66 Score=54.62 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=53.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhcCCcc--------cCCHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP---------------------TLTKFQNVGGLI--------ANSPA 197 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~---------------------~~~~l~~~G~~~--------~~s~~ 197 (988)
.+|+|||.|.-|.+.|..|+++||.|++|++.+. .++.|.+.|+.+ .-+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~ 203 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLE 203 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHH
Confidence 6999999999999999999999999999988752 233455555432 34677
Q ss_pred HHhccCcEEEEEcCChH
Q 001973 198 EAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 198 e~~~~aDvV~l~vp~~~ 214 (988)
++.++-|.||+++.+..
T Consensus 204 ~L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 204 ELLKEYDAVFLATGAGK 220 (457)
T ss_pred HHHHhhCEEEEeccccC
Confidence 88888899999987643
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.83 E-value=1 Score=53.26 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=64.7
Q ss_pred CeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhH--HHHHHhcCCccc-C-CHHHHhccCcEEEEEcCCh---HHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRPT--LTKFQNVGGLIA-N-SPAEAAKDVGVLVIMVTNE---AQAE 217 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~--~~~l~~~G~~~~-~-s~~e~~~~aDvV~l~vp~~---~~~~ 217 (988)
++|.|||+|..|.+.++.|.+. |++|+++|..+.. .+.|.+ |+.+. . ...+.+.++|+|+.+..-+ ..++
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~ 86 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ 86 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence 5899999999999999999988 5889999976432 234543 76552 1 1234457899887765222 2233
Q ss_pred HHHc------cccchhhhCCCCCEEEecCCCCHHHHHH-HHHHHHh
Q 001973 218 SVLY------GDLGAVSALSSGASIILSSTVSPGFVSQ-LERRLQF 256 (988)
Q Consensus 218 ~vl~------~~~~i~~~l~~g~ivId~st~~p~~~~~-l~~~l~~ 256 (988)
.... +.-+++..+.+.++|..+.|..-.|+.. ++..+..
T Consensus 87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2211 0112222222445666665655555554 4555554
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.74 E-value=1 Score=52.21 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=64.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEE-EEeCC----------hhHHHHHHhcCC--------cccCCHHHH-hccCcE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVI-GYDVY----------RPTLTKFQNVGG--------LIANSPAEA-AKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~G~--------~~~~s~~e~-~~~aDv 205 (988)
.++|+|.|.|++|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..+.+. ... +..+. ..+||+
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dv 284 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDV 284 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccE
Confidence 4799999999999999999999999988 66776 555544333221 111 22222 348898
Q ss_pred EEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 206 LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 206 V~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
++-|--. .++. .+-.+.+ +-++|+...+. |- +.+..+.|.+ +|+.|+
T Consensus 285 liP~Al~-----~~I~--~~na~~i-~ak~I~egAN~-p~-t~ea~~~L~~--rGI~~~ 331 (410)
T PLN02477 285 LIPAALG-----GVIN--KENAADV-KAKFIVEAANH-PT-DPEADEILRK--KGVVVL 331 (410)
T ss_pred Eeecccc-----ccCC--HhHHHHc-CCcEEEeCCCC-CC-CHHHHHHHHH--CCcEEE
Confidence 8877433 2332 1112223 34566665555 43 4455666766 577766
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.37 Score=40.85 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=27.2
Q ss_pred EEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 151 FIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 151 iIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
|||.|.-|...|..|++.|++|++++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998754
|
... |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.26 Score=56.79 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=32.3
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
...|+|.|.|. |.+|+.+++.|.+.||+|++.+|..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 34579999997 9999999999999999999999864
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.7 Score=47.42 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=53.6
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+++-|.|. |.+|..++..|++.|++|++.+|+++..+.+...+ ...+-.=+.++..++.++ +.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-------------~~~~~~Dl~~~~~~~~~~---~~ 65 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAG-------------FTAVQLDVNDGAALARLA---EE 65 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-------------CeEEEeeCCCHHHHHHHH---HH
Confidence 46777774 89999999999999999999999988776655432 223333345555566655 33
Q ss_pred hhhhCCCCCEEEecCCC
Q 001973 226 AVSALSSGASIILSSTV 242 (988)
Q Consensus 226 i~~~l~~g~ivId~st~ 242 (988)
+.+...+=+++|++.+.
T Consensus 66 ~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 66 LEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 33333344677777653
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.66 E-value=1.6 Score=47.17 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=53.2
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
+.++|-|.|. |.+|..++..|++.|++|++++|+++..+.+.+. ..+.-....++..-+.++.++..++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~--- 79 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAA-------LRAAGGAAEALAFDIADEEAVAAAF--- 79 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHH-------HHhcCCceEEEEccCCCHHHHHHHH---
Confidence 3467888865 8899999999999999999999998776554331 1110112233333455556666655
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+++.....+=..+|++..
T Consensus 80 ~~~~~~~~~id~vi~~ag 97 (256)
T PRK06124 80 ARIDAEHGRLDILVNNVG 97 (256)
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 333333333345565544
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=1.3 Score=48.81 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=34.9
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
++++|-|.| .|.+|..++..|++.|++|+++||+.+..+++.
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAV 47 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 345788887 589999999999999999999999987665543
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.28 Score=57.15 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=34.6
Q ss_pred hcCCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 141 AKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 141 m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
||+....+|.|||.|..|..+|..|+++|++|+++++++
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 444555689999999999999999999999999999875
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.8 Score=50.47 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=59.0
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhC----CCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRS----NFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..++|.|||-+ .+|.++|..|.+. +..|+++... +.++++.+++||+|+.++.-+.-+.
T Consensus 160 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~-- 223 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNLVK-- 223 (297)
T ss_pred CCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCccC--
Confidence 34799999875 5799999999988 6789887543 3467888999999999998766322
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 224 -------~~~ik~gavVIDvGin 239 (297)
T PRK14168 224 -------PEWIKPGATVIDVGVN 239 (297)
T ss_pred -------HHHcCCCCEEEecCCC
Confidence 2457899999998865
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=90.54 E-value=1.1 Score=48.23 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=32.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC-----------CeEEEEeCChhHHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN-----------FTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G-----------~~V~v~dr~~~~~~~l~ 186 (988)
..||.|||+|..|+.++.+|++.| .+++++|.+.=....++
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLn 62 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVG 62 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhh
Confidence 469999999999999999999874 28999997753333333
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.32 Score=55.96 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=32.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
++++|.|||.|..|..+|..|.+.|++|++|+++++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 356899999999999999999999999999998754
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.97 Score=55.85 Aligned_cols=114 Identities=12% Similarity=0.025 Sum_probs=64.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~~ 215 (988)
.+|+|||+|-+|+.++.+|+..|. +++++|.+.=....|+.+ |-..+.-.++.+. ..++-|.+.+..-.
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~ 123 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGIN 123 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 599999999999999999999996 688888775444444432 1111111222221 23444444433221
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCC-HHHHHHHHHHHHhcCCCceEecCccc
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVS-PGFVSQLERRLQFEGKDLKLVDAPVS 269 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~-p~~~~~l~~~l~~~~~g~~~ldapv~ 269 (988)
-++ +...+..-++|||++... ......+.+.... .++.++.+.+.
T Consensus 124 ~~n-------~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~--~~iP~i~~g~~ 169 (679)
T PRK14851 124 ADN-------MDAFLDGVDVVLDGLDFFQFEIRRTLFNMARE--KGIPVITAGPL 169 (679)
T ss_pred hHH-------HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEeecc
Confidence 111 112233457899988764 3333455555444 56667765443
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.65 Score=57.93 Aligned_cols=68 Identities=24% Similarity=0.295 Sum_probs=51.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh---------------------hHHHHHHhcCCccc--------CCH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR---------------------PTLTKFQNVGGLIA--------NSP 196 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~---------------------~~~~~l~~~G~~~~--------~s~ 196 (988)
-.+|+|||.|.-|.+-|..|-+.||.|++|.|+. .+++-+.++|+.+. -++
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs~ 1864 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVSL 1864 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccccH
Confidence 3699999999999999999999999999999864 22333445566543 355
Q ss_pred HHHhccCcEEEEEcCCh
Q 001973 197 AEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 197 ~e~~~~aDvV~l~vp~~ 213 (988)
.++.+.-|.|++|+.+.
T Consensus 1865 d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1865 DELKKENDAIVLATGST 1881 (2142)
T ss_pred HHHhhccCeEEEEeCCC
Confidence 66667777777777653
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.57 Score=54.27 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=35.6
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhC-CCeEEEEeCChhHHHHHH
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRS-NFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~ 186 (988)
+.|||.|.| .|.+|+.+++.|.++ |++|+++||+.++...+.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~ 56 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLL 56 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhh
Confidence 346999998 599999999999998 599999999887766554
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.86 Score=50.22 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=59.4
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHhC----CCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLRS----NFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..+++.|||-+ .+|.++|..|.++ +..|+++... +.++++..++||+|+.++.-+.-+.
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~-- 219 (297)
T PRK14167 156 EGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR--------------TDDLAAKTRRADIVVAAAGVPELID-- 219 (297)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC--
Confidence 34799999976 5799999999987 6789987532 3467788999999999998766322
Q ss_pred HccccchhhhCCCCCEEEecCCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~ 243 (988)
...+++|.+|||.+...
T Consensus 220 -------~~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 220 -------GSMLSEGATVIDVGINR 236 (297)
T ss_pred -------HHHcCCCCEEEEccccc
Confidence 24578999999988653
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=1.7 Score=47.41 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=35.0
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKF 185 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 185 (988)
+.++|-|.|. |.+|..+++.|++.|++|++.+|+++..+.+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~ 49 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAA 49 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3468888877 8999999999999999999999998766544
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.79 Score=50.54 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=57.9
Q ss_pred CCCeEEEEccc-hHHHHHHHHHHh----CCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLG-AMGFGMATHLLR----SNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G-~mG~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
..++|.|||-+ .+|.++|..|.+ .|..|++...+ +.++.+.++.||+||.+++.+..+.
T Consensus 158 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~--------------t~~l~~~~~~ADIvI~Avg~~~li~-- 221 (295)
T PRK14174 158 KGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA--------------TKDIPSYTRQADILIAAIGKARFIT-- 221 (295)
T ss_pred CCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCccCccC--
Confidence 34799999976 579999999987 67889988754 2356778899999999998764211
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.++||.+..
T Consensus 222 -------~~~vk~GavVIDVgi~ 237 (295)
T PRK14174 222 -------ADMVKPGAVVIDVGIN 237 (295)
T ss_pred -------HHHcCCCCEEEEeecc
Confidence 2346899999998754
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.86 Score=51.88 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=32.4
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPT 181 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~ 181 (988)
+++|.|.|. |.+|+.++..|.++||+|++.+|+.+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD 46 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence 358999997 999999999999999999999998664
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.28 E-value=1.5 Score=51.99 Aligned_cols=65 Identities=22% Similarity=0.392 Sum_probs=43.5
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCc-ccCCHHHHhccCcEEEEEc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGL-IANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~-~~~s~~e~~~~aDvV~l~v 210 (988)
...+|.|+|+|.-|.+.++.|.+ |.+|+++|.++.....+.+. ... ......+...++|+|+.+-
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SP 71 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSP 71 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECC
Confidence 44689999999999999999995 99999999654433222221 111 1111234456789887764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 988 | ||||
| 3g0o_A | 303 | Crystal Structure Of 3-Hydroxyisobutyrate Dehydroge | 1e-39 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 1e-33 | ||
| 2gf2_A | 296 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 2e-30 | ||
| 2i9p_A | 319 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 2e-30 | ||
| 3pdu_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 4e-18 | ||
| 3pef_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 8e-18 | ||
| 1vpd_A | 299 | X-Ray Crystal Structure Of Tartronate Semialdehyde | 3e-17 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 6e-16 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 2e-15 | ||
| 1yb4_A | 295 | Crystal Structure Of The Tartronic Semialdehyde Red | 2e-14 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 2e-13 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 8e-11 | ||
| 4dll_A | 320 | Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re | 2e-07 | ||
| 3q3c_A | 299 | Crystal Structure Of A Serine Dehydrogenase From Ps | 3e-07 | ||
| 3obb_A | 300 | Crystal Structure Of A Possible 3-Hydroxyisobutyrat | 3e-07 | ||
| 3qha_A | 296 | Crystal Structure Of A Putative Oxidoreductase From | 5e-06 |
| >pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase (Ygbj) From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296 | Back alignment and structure |
|
| >pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319 | Back alignment and structure |
|
| >pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320 | Back alignment and structure |
|
| >pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From Pseudomonas Aeruginosa Pao1 In Complex With Nad Length = 299 | Back alignment and structure |
|
| >pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 Length = 300 | Back alignment and structure |
|
| >pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 988 | |||
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 1e-106 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 4e-21 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 2e-90 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 4e-19 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 6e-80 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 5e-14 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 4e-77 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 7e-15 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 1e-76 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 5e-15 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 2e-76 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 4e-15 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 2e-76 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 6e-16 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 3e-75 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 8e-14 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 3e-73 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 1e-12 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 4e-73 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 2e-13 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 5e-72 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 7e-14 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 3e-71 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 2e-11 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 9e-66 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 3e-13 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 1e-62 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 2e-08 | |
| 1yzy_A | 413 | Hypothetical protein HI1011; putative tRNA synthas | 6e-59 | |
| 3dqq_A | 421 | Putative tRNA synthase; structural genomics, unkno | 8e-59 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 2e-42 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 6e-04 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 8e-38 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 2e-32 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-19 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 2e-16 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 3e-16 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 3e-16 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 3e-16 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 4e-16 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 7e-16 | |
| 1dos_A | 358 | Aldolase class II; lyase, classii fructose 1,6-bis | 5e-12 | |
| 3elf_A | 349 | Fructose-bisphosphate aldolase; zinc enzyme, dihyd | 2e-11 | |
| 3qm3_A | 357 | Fructose-bisphosphate aldolase; structural genomic | 7e-11 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 1e-08 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 3e-08 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 2e-07 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 1e-06 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 6e-06 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 1e-05 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 9e-05 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 2e-04 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 3e-04 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 6e-04 |
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = e-106
Identities = 121/297 (40%), Positives = 184/297 (61%), Gaps = 3/297 (1%)
Query: 143 SNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL-IANSPAEAAK 201
+ + VG +GLG+MG G A LR+ + G D+ G A S E A
Sbjct: 4 TGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAG 63
Query: 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDL 261
V LVI+V N AQ VL+G+ G + G+++++SST+S ++ L +L
Sbjct: 64 VVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAAL--TALNL 121
Query: 262 KLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMA 321
++DAPVSGG +A+ GE+T+MA+G+E + VL A++ +Y I GAGS VK+
Sbjct: 122 NMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKII 181
Query: 322 NQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSA 381
+QLLAGVHIA+AAEAMA AR G+ V+++++T + G+SWMFENR+ H++D DYTP SA
Sbjct: 182 HQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSA 241
Query: 382 LDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSG 438
+DIFVKD+G++A + R PL +++ A +F + S AG+G++DD+AV+K++
Sbjct: 242 VDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGEGH 298
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 4e-21
Identities = 39/115 (33%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
+++ LL GVH+ A+ EA++L + GI V+YD++++AAGNSW+F+N + +++ GD
Sbjct: 180 IIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPR 239
Query: 61 F-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWE 114
++ F+++LG+ D AK L FPLPL + A + + +D+ ++K++
Sbjct: 240 SAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFS 294
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 289 bits (742), Expect = 2e-90
Identities = 103/300 (34%), Positives = 157/300 (52%), Gaps = 4/300 (1%)
Query: 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVG 204
++GFIGLGAMG MA +LL+ TV +D+ + G + + A
Sbjct: 3 KSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASD 62
Query: 205 VLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264
++ + N E+V+ G G +SA +G I+ S+VSP ++ + K + V
Sbjct: 63 IIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVA--AEKGIDYV 120
Query: 265 DAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQL 324
DAPVSGG K A G LTIM +E + VLS + + +Y + G GAG VK+ N L
Sbjct: 121 DAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHV-GDTGAGDAVKIVNNL 179
Query: 325 LAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPH-MLDNDYTPYSALD 383
L G ++AS AEA+ G + GL + II S G S+ E ++ ++ D+ A+D
Sbjct: 180 LLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMD 239
Query: 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKVEG 443
+ KD+G+ VPL ++ +A Q+F G A G GR+D +AV+KV+E ++GV V G
Sbjct: 240 LQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTGVSVSG 299
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 4e-19
Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNL-LRGDAKL 59
+VN+LL G ++ + EA+ LGV+ G+ P + +II ++G S+ + + + GD
Sbjct: 175 IVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAG 234
Query: 60 HFLNA-FIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLG 118
F ++LG+AL+ K PLP+ A+A Q G + +D ++KVWE + G
Sbjct: 235 GFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTG 294
Query: 119 VNITDA 124
V+++
Sbjct: 295 VSVSGG 300
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 261 bits (668), Expect = 6e-80
Identities = 88/294 (29%), Positives = 145/294 (49%), Gaps = 10/294 (3%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
VGFIGLG MG MA +L++ + +I YDV+ +FQ+ G + +SPA+ A+ ++
Sbjct: 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRII 61
Query: 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267
M+ A G G + + G+ +I SST+ P +L + + E +DAP
Sbjct: 62 TMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEV--EKMGAVFMDAP 119
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
VSGGV A G LT M G E+ + +L + + G G G K+ N +L
Sbjct: 120 VSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYC-GAVGTGQAAKICNNMLLA 178
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE--NRVPHML-----DNDYTPYS 380
+ + AEAM G RLGL+ ++L I+ S G W + N VP ++ N+Y
Sbjct: 179 ISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGF 238
Query: 381 ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE 434
+ KD+G+ S + P+ + ++AHQ++ A G+ ++D ++V +
Sbjct: 239 GTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLR 292
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 5e-14
Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNY--IPNLLRGD-- 56
+ N++L + +I + EA++LG++ G+ P +L I++ ++G W Y +P ++ G
Sbjct: 171 ICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPS 230
Query: 57 ---------AKLHFLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNP 107
L ++LG+A D A + P+ L ++AHQ + + ++ D
Sbjct: 231 ANNYQGGFGTTLM-----AKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFS 285
Query: 108 PLVKVWEN 115
+ +
Sbjct: 286 SVFQFLRE 293
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 4e-77
Identities = 80/288 (27%), Positives = 131/288 (45%), Gaps = 3/288 (1%)
Query: 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVL 206
T GF+GLG MG MA +L+R+ F V ++ +G A+SPAE +
Sbjct: 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDIT 61
Query: 207 VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266
+ M+ + A A V +G G + + G I STV + + + + + ++A
Sbjct: 62 IAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVT--ARGGRFLEA 119
Query: 267 PVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLA 326
PVSG K A G L I+AAG + G +AL +K + G G G+ +K+ ++
Sbjct: 120 PVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHL-GEVGQGARMKLVVNMIM 178
Query: 327 GVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFV 386
G + + E MA G GL+ L ++ ++ MF+ + +L ++ L
Sbjct: 179 GQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQ 238
Query: 387 KDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE 434
KD+ + PLH + A++ F AAG +D AAV +V E
Sbjct: 239 KDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 7e-15
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
+V +++ G + A E ++LG G+ L +++ A + +FK LL G+
Sbjct: 172 LVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTS 231
Query: 61 F-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWE 114
F L ++L +A+++ L PL A A++ + HA++D + +V E
Sbjct: 232 FPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 252 bits (646), Expect = 1e-76
Identities = 75/296 (25%), Positives = 147/296 (49%), Gaps = 3/296 (1%)
Query: 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVL 206
+VGFIGLG MG M+ +LL++ ++++ D + G A++ A+ V+
Sbjct: 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVI 65
Query: 207 VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266
+ M+ N + V G+ G + G +I S+++P ++ L+ K ++++DA
Sbjct: 66 ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALK--AKGVEMLDA 123
Query: 267 PVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLA 326
PVSGG +A G L++M G + ++ A++ + G GAG+ K+ANQ++
Sbjct: 124 PVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT-GDIGAGNVTKLANQVIV 182
Query: 327 GVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFV 386
++IA+ +EA+ + G+N +++ I S + + + P ++D ++ P +D+ +
Sbjct: 183 ALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHI 242
Query: 387 KDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKVE 442
KD+ L ++ ++ A A G G D +A+ YE L+ V+V
Sbjct: 243 KDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKVEVT 298
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 5e-15
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
+ N ++ +++ A EA++L + G++P ++Y I S + P ++ + K
Sbjct: 176 LANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPG 235
Query: 61 F-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119
F ++ I++L ALD + + LPL A + + + H NDD+ L +E + V
Sbjct: 236 FRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKV 295
Query: 120 NIT 122
+T
Sbjct: 296 EVT 298
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 252 bits (646), Expect = 2e-76
Identities = 62/308 (20%), Positives = 136/308 (44%), Gaps = 3/308 (0%)
Query: 127 LEAYKPEELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186
++ + + + + + ++GF+GLG MG G+ ++LL+ TV ++ F
Sbjct: 11 VDLGTENLYFQSMGSITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI 70
Query: 187 NVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGF 246
G + +PAE + V++ A+ ++ G G + + G + STV
Sbjct: 71 QEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADT 130
Query: 247 VSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306
V++L + + + + ++APVSG + ++ G L I+AAG + S A+ + +
Sbjct: 131 VTELAQVIV--SRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSF 188
Query: 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFEN 366
+ G G + + + ++ G +A+ AE + G + + L +I+ +S +
Sbjct: 189 FL-GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQ 247
Query: 367 RVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDD 426
+ ++L ++ P L KD+ + + P ++ A++++ A D
Sbjct: 248 KCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDM 307
Query: 427 AAVVKVYE 434
+AV + Y
Sbjct: 308 SAVYRAYI 315
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 4e-15
Identities = 21/116 (18%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
++ ++++G + E ++L G L DI++ S N+L+G+ K
Sbjct: 201 LIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPD 260
Query: 61 F-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWEN 115
F L ++L +A+ + + P P+ A A++ + +++D + + + +
Sbjct: 261 FYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYIH 316
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 2e-76
Identities = 79/287 (27%), Positives = 133/287 (46%), Gaps = 3/287 (1%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
+ GFIGLG MG MA +L+++ +V ++ + +G A +P E + V
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTF 62
Query: 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267
M+ + A AE V +G G + + G + STV P ++ + K + ++AP
Sbjct: 63 AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVV--AKGGRFLEAP 120
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
VSG K A G L I+AAG + +K+ + G G G+ +K+ ++ G
Sbjct: 121 VSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHL-GDVGKGAEMKLVVNMVMG 179
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVK 387
+A E +A G + GL T + ++I ++ MF + + D ++ P L K
Sbjct: 180 GMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQK 239
Query: 388 DMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE 434
D+ + PL S A++LF AAG+G +D +A+ K YE
Sbjct: 240 DLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 6e-16
Identities = 21/115 (18%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
+V +++ G + E ++LG + G+ + D+I A + +F + +
Sbjct: 172 LVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPA 231
Query: 61 F-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWE 114
F L ++L +A+ + + PL A A++ + ++D + K +E
Sbjct: 232 FPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 249 bits (637), Expect = 3e-75
Identities = 73/296 (24%), Positives = 138/296 (46%), Gaps = 3/296 (1%)
Query: 139 ITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAE 198
+ + + + VGF+GLG MG M+ +LL++ F V ++ + G + SPAE
Sbjct: 14 LVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAE 73
Query: 199 AAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG 258
K + M+++ A SV++ G + + G I STV ++ + G
Sbjct: 74 VIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAIT--G 131
Query: 259 KDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGV 318
K + V+ PVSG K A G+L I+AAG + + + L ++ + + G G G+ +
Sbjct: 132 KGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYL-GQVGNGAKM 190
Query: 319 KMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTP 378
K+ ++ G + + +E + + GL++ L +I+ ++ MF+ + P M + Y P
Sbjct: 191 KLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPP 250
Query: 379 YSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE 434
L KDM + V + ++ A++ F + G G D +AV++ +
Sbjct: 251 AFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 8e-14
Identities = 22/115 (19%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
++ +++ G + A E + L + G+ L DI+ A + +FK P++ +
Sbjct: 192 LIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPA 251
Query: 61 F-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWE 114
F L +++ +AL + A +P+ A A++ S + D +++ +
Sbjct: 252 FPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 242 bits (621), Expect = 3e-73
Identities = 73/298 (24%), Positives = 143/298 (47%), Gaps = 4/298 (1%)
Query: 144 NSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDV 203
++ ++GFIGLG MG MA +L R+ + + P + ++G + + + +
Sbjct: 1 SNAMKLGFIGLGIMGSPMAINLARAGHQLHVTTI-GPVADELLSLGAVNVETARQVTEFA 59
Query: 204 GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKL 263
++ IMV + Q E VL+G+ G G +I+ S++SP + +R+
Sbjct: 60 DIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVN--EMGADY 117
Query: 264 VDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQ 323
+DAPVSGG A G L+IM G ++ + L + + ++ GG G G K+ANQ
Sbjct: 118 LDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLV-GGNGDGQTCKVANQ 176
Query: 324 LLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALD 383
++ ++I + +EA+ F ++ G + + + SS + E M++ + P +
Sbjct: 177 IIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIA 236
Query: 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441
+ KD+ + + + + L + +LF +A G + D +A+V+ E ++ K+
Sbjct: 237 LHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALELMANHKL 294
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 1e-12
Identities = 22/123 (17%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
+ N ++ +++ A EA+ + G P + + +S I + + ++ +
Sbjct: 173 VANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPG 232
Query: 61 F-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119
F + ++L +AL AK LA LP A + ++ + D+ +V+ E +
Sbjct: 233 FKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALELMANH 292
Query: 120 NIT 122
++
Sbjct: 293 KLS 295
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 5e-72
Identities = 74/294 (25%), Positives = 125/294 (42%), Gaps = 15/294 (5%)
Query: 140 TAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEA 199
A + ++G+IGLG MG MAT + V YD+ +T G +A+S A+
Sbjct: 9 AAHTTEQLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADV 68
Query: 200 AKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGK 259
A + I V ++AQ V+ G G I + ST+S +L R L + +
Sbjct: 69 AAADLI-HITVLDDAQVREVVGELAGHAKP---GTVIAIHSTISDTTAVELARDL--KAR 122
Query: 260 DLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVK 319
D+ +VDAPVSGG A+ GEL M E + + + G GAG+ +K
Sbjct: 123 DIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHA-GEPGAGTRMK 181
Query: 320 MANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSW-----MFENRVPHML-- 372
+A +L A+A EAM GL+ + L ++ + + M + + +
Sbjct: 182 LARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPD 241
Query: 373 DNDYTP-YSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQD 425
+ Y P + KD+ + + V L ++ +A++ AG ++
Sbjct: 242 NFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEKE 295
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 7e-14
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 9/114 (7%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGD---A 57
+ ++L A+ EA+ L G+ L ++ + + + D
Sbjct: 182 LARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPD 241
Query: 58 KLHFLNAF------IQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDD 105
+ ++L +AL + + ++ LPL +A++ L GL H +
Sbjct: 242 NFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEKE 295
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 238 bits (609), Expect = 3e-71
Identities = 72/300 (24%), Positives = 127/300 (42%), Gaps = 5/300 (1%)
Query: 140 TAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEA 199
++ F+G G+MG MA L + + + ++ +G I A
Sbjct: 25 VESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAA 84
Query: 200 AKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGK 259
A+D ++V M+ N A + VL+ G +A+ G+ + ++++P RL
Sbjct: 85 ARDADIVVSMLENGAVVQDVLFAQ-GVAAAMKPGSLFLDMASITPREARDHAARLG--AL 141
Query: 260 DLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVK 319
+ +D PVSGG A G L IMA G + + +L +V G G+G K
Sbjct: 142 GIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGRATHV--GPHGSGQLTK 199
Query: 320 MANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPY 379
+ANQ++ G+ I + AEA+ F + G + + IT S + + M++ D+ P
Sbjct: 200 LANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPR 259
Query: 380 SALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGV 439
+ L I +KDM I+ + QL+ G G D + + + +G+
Sbjct: 260 ARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNGM 319
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-11
Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
+ N ++ G+ + A EA+ + G + + I+ +S + + + ++ D
Sbjct: 200 LANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPR 259
Query: 61 F-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119
L+ ++++ AL A+ + F P+ + Q G+ H + D L + G+
Sbjct: 260 ARLSIQLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNGM 319
Query: 120 N 120
+
Sbjct: 320 S 320
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 9e-66
Identities = 79/296 (26%), Positives = 129/296 (43%), Gaps = 10/296 (3%)
Query: 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVL 206
+V FIGLGAMG+ MA HL R T++ + L + G P E + V+
Sbjct: 2 EKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGS--EAVPLERVAEARVI 59
Query: 207 VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266
+ + V L G + +++ P +L RL K + +DA
Sbjct: 60 FTCLPTTREVYEVA---EALYPYLREGTYWVDATSGEPEASRRLAERL--REKGVTYLDA 114
Query: 267 PVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLA 326
PVSGG A G LT+M G EE+++ L A ++K+ + G GAG VK N L
Sbjct: 115 PVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHV-GPVGAGHAVKAINNALL 172
Query: 327 GVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPH-MLDNDYTPYSALDIF 385
V++ +A E + + G++ +I S G S EN +P +L + AL +
Sbjct: 173 AVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLL 232
Query: 386 VKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441
VKD+GI ++ P + +A +++ D +++ E GV++
Sbjct: 233 VKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGGVEI 288
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPN-LLRGDAKL 59
+N+ L V+L A+ E + V+ G+ ++I+ ++G S +N IP +L
Sbjct: 166 AINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPK 225
Query: 60 HF-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLG 118
F L +++LGIA+ + P PLL +A + + + D+ +++ E G
Sbjct: 226 TFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGG 285
Query: 119 VNI 121
V I
Sbjct: 286 VEI 288
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 1e-62
Identities = 56/298 (18%), Positives = 101/298 (33%), Gaps = 9/298 (3%)
Query: 140 TAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEA 199
+ + V IGLGAMG MA LL+ V ++ G + S A
Sbjct: 3 LSDESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAA 62
Query: 200 AKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGK 259
+ ++ + VL G G AL+ +I+ +T + L+ +
Sbjct: 63 LSASPATIFVLLDNHATHEVL-GMPGVARALA-HRTIVDYTTNAQDEGLALQGLV--NQA 118
Query: 260 DLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVK 319
V + + E + G E+ + ++L L+ +
Sbjct: 119 GGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFL--PWDEALAFA 176
Query: 320 MANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGG--SSWMFENRVPHMLDNDYT 377
A + + EA+ G R GL ++ ++ + E V + D+
Sbjct: 177 TVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFK 236
Query: 378 -PYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE 434
+ LD+ IA+ +Q V + Q+ +A G+G QD AA K +
Sbjct: 237 GDQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFA 294
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 13/118 (11%), Positives = 34/118 (28%), Gaps = 5/118 (4%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAG--NSWIFKNYIPNLLRGDAK 58
+++ ++ EA+ G +FG+ ++ + + + + L D K
Sbjct: 178 VLHAHA-FAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFK 236
Query: 59 LHF--LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWE 114
L+ P+ Q + + + + D K +
Sbjct: 237 GDQARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFA 294
|
| >1yzy_A Hypothetical protein HI1011; putative tRNA synthase, structural genomics, PSI, protein structure initiative; 2.10A {Haemophilus influenzae} SCOP: c.146.1.1 Length = 413 | Back alignment and structure |
|---|
Score = 207 bits (527), Expect = 6e-59
Identities = 72/444 (16%), Positives = 141/444 (31%), Gaps = 45/444 (10%)
Query: 480 LIVLDDDPTGTQTVHGIEVLTEWSVASLV----EQFRKKPLCFFILTNSRALSSEKASSL 535
L V+ DD TG + V S + + K I SR+ +A
Sbjct: 2 LGVIADDFTGASDIASFLVENGLSTVQMNGVPTQSLNSKVDAIVISLKSRSNPVNEAIEQ 61
Query: 536 ITDICRNLRTASNSVENTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQG 595
+ L+ + DST +G+ DA + L E D +I P
Sbjct: 62 SLRAYQWLKENG--CTQFYFKYCSTFDSTAKGNIGPVTDALLDELNE-DFTVITPALPVN 118
Query: 596 GRYTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISI 655
GR +VGD V ++ +NL ++ + G+ ++
Sbjct: 119 GRTIFNGYLFVGD----VLLSESGMKNHPITPMVDANLMRLMDAQAKGK-----TGLVAY 169
Query: 656 QLLRKGGPDAVCERLCSLQKGST--CIVNAASERDIAVFAAGMIQAELKGKSFLCRTAAS 713
+ K G V E L+ +V+A + V A + +L T S
Sbjct: 170 ADVIK-GASRVQECFAELKAQGYRYAVVDAVDNSQLEVLAEAVADFKL-------VTGGS 221
Query: 714 FVSARIGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVS 773
+ A + + + +++ GS T KQVE+ ++ ++
Sbjct: 222 GLGAYMAARLSGGKKGTNAFTPTKG-KTVVLSGSCSVMTNKQVEKYREKA----PHFQLD 276
Query: 774 VDKVAMKSLEERQEEIIRAAEMVDVFLQARKDTLLITSR---VLITGKTPSESLEINLKV 830
V++ + I + + V L + ++ + L + + + +
Sbjct: 277 VEQAI-----HNENYIEQLYQWVIANLDSEFAPMVYATVPPDALKAIQHQFGVDQASHAI 331
Query: 831 SSAMVEIVRRI-TTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAGVPLWELGPESR 889
+ ++ ++ + GG TSS + + L + Q GVP ++
Sbjct: 332 ENTFAKLAAKLKQYGVTNFITAGGETSSIV-VQELGFTGFHIGKQIAPGVPWL----KAV 386
Query: 890 HPGVPYVVFPGNVGDNNAVANVVR 913
+ + GN G +
Sbjct: 387 EEDIFLALKSGNFGKEDFFEYAQG 410
|
| >3dqq_A Putative tRNA synthase; structural genomics, unknown function, center for structural genomics of infecti diseases; 2.70A {Salmonella typhimurium} Length = 421 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 8e-59
Identities = 66/441 (14%), Positives = 133/441 (30%), Gaps = 35/441 (7%)
Query: 480 LIVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPL----CFFILTNSRALSSEKASSL 535
+ V+ DD TG + V + + I +R+ +++A
Sbjct: 5 IGVIADDFTGATDIASFLVENGMPTVQINDVPTGTQPEGCDAVVISLKTRSCPAQEAIKQ 64
Query: 536 ITDICRNLRTASNSVENTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQG 595
L+ + + DST G+ DA + L +I P
Sbjct: 65 SLAALVWLKKQG--CQQVYFKYCSTFDSTAEGNIGPVTDALMVALD-TSFTVISPALPVN 121
Query: 596 GRYTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISI 655
GR + +V + ++ S L +E + GR ++
Sbjct: 122 GRTVYQGYLFVMN----HLLAESGMRHHPINPMTDSYLPRLMEAQAQGRCGVIPAQTL-- 175
Query: 656 QLLRKGGPDAVCERLCSLQKGST--CIVNAASERDIAVFAAGMIQAELKGKSFLCRTAAS 713
G A L LQ+ +++A +ER + + L+ + +
Sbjct: 176 ----DEGVAATRAALSRLQQEGYRYAVLDALNERHLEIQGEV-----LRDAPLVTG-GSG 225
Query: 714 FVSARIGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVS 773
AK + S +++ GS T +QV + V
Sbjct: 226 LAMGLARQWAKHGVSQARSAGYPLSGRAVVLSGSCSQMTNQQVAFYRQHAPTRDVDVARC 285
Query: 774 VDKVAMKSLEERQEEIIRAAEMVDVFLQARKDTLLITSRVLITGKTPSESLEINLKVSSA 833
+ ++ E + + + + + + +++ L + + E + V +
Sbjct: 286 LSSETREAYAEALAQWVLSQDSELAPMISATA----STQALAAIQQQYGATEASHAVEAL 341
Query: 834 MVEIVRRI-TTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAGVPLWELGPESRHPG 892
+ R+ + GG TS + T++L + GVP + H
Sbjct: 342 FSLLAARLAEGGITRFIVAGGETSGVV-TQSLGITGFHIGPCISPGVPWV----NALHAP 396
Query: 893 VPYVVFPGNVGDNNAVANVVR 913
V + GN GD + R
Sbjct: 397 VSLALKSGNFGDESFFIRAQR 417
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 2e-42
Identities = 49/301 (16%), Positives = 104/301 (34%), Gaps = 15/301 (4%)
Query: 134 ELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRS-NFTVIGYDVYR--PTLTKFQNVGG 190
+L + ++ ++GFIG G +A+ L ++ + YD + + +G
Sbjct: 12 DLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGV 71
Query: 191 LIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQL 250
S AE A + V+ +VT +A E A L GA ++ SP +
Sbjct: 72 SCKASVAEVAGECDVIFSLVTAQAALEVAQ----QAGPHLCEGALYADFTSCSPAVKRAI 127
Query: 251 ERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKG 310
+ + V VK ++ ++ + ++ V+ G
Sbjct: 128 GDVISRHRPSAQYAAVAVMSAVKPHGHRVPLVVDGDGARRFQA---AFTLYGCRIEVLDG 184
Query: 311 GCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPH 370
G + +KM + A EA+A ++GL RVL ++ + +
Sbjct: 185 EVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLASLDASFPEHHL--RDLALY 242
Query: 371 MLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVV 430
+++ + A ++G +A S V ++ ++ + + V
Sbjct: 243 LVERNLEH--ADR-RAHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALKQRPGDV 299
Query: 431 K 431
+
Sbjct: 300 R 300
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 8/119 (6%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
M + +EA++ + G+ VL + ++ + ++ L+ +
Sbjct: 194 MCRSAVLKGLEALFLEALAAAEKMGLADRVLASLDASFPEHHL--RDLALYLVER----N 247
Query: 61 FLNAF--IQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVL 117
+A LG ++ + +++L A P V+ W L
Sbjct: 248 LEHADRRAHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALKQRPGDVRAWLRSL 306
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 8e-38
Identities = 53/302 (17%), Positives = 94/302 (31%), Gaps = 21/302 (6%)
Query: 134 ELAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVI-GYDVYRPTLTKFQNV---- 188
+L + + +T + FIG G +A L N + YD+ +
Sbjct: 12 DLGTENLYFQSMMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARA 71
Query: 189 --GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGF 246
G+ V++ +V A A LS A I ++V P
Sbjct: 72 AELGVEPLDDVAGIACADVVLSLVVGAATKAVAA----SAAPHLSDEAVFIDLNSVGPDT 127
Query: 247 VSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306
+ + V+ V V + ++A + L+AL L
Sbjct: 128 KALAAGAI--ATGKGSFVEGAVMARVPPYAEKVPILVAGRRAVEVAE---RLNALGMNLE 182
Query: 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFEN 366
+ G S +KM ++ A EA++ R G+ R+L ++ G W +
Sbjct: 183 AVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETFPGLDWR--D 240
Query: 367 RVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDD 426
+ L + V +M A S + +S A + A AA +
Sbjct: 241 VADYYLSRTFEH--GAR-RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLS 297
Query: 427 AA 428
Sbjct: 298 VN 299
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 43/227 (18%), Positives = 72/227 (31%), Gaps = 17/227 (7%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
RVGFIG G + +A+ L V+ R T + + + E V++
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61
Query: 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267
VT + + + +SP V ++ G VDA
Sbjct: 62 SAVTPGVALGAARRA------GRHVRGIYVDINNISPETVRMASSLIEKGG----FVDAA 111
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327
+ G V+R I + E L+ + V G S +KM
Sbjct: 112 IMGSVRRKGADIRIIASGRDAEEFM----KLNRYGLNIEVRGREPGDASAIKMLRSSYTK 167
Query: 328 VHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWM--FENRVPHML 372
A E + RLGL V ++ + G+ + +R+
Sbjct: 168 GVSALLWETLTAAHRLGLEEDV-LEMLEYTEGNDFRESAISRLKSSC 213
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 93.4 bits (231), Expect = 2e-19
Identities = 99/649 (15%), Positives = 182/649 (28%), Gaps = 203/649 (31%)
Query: 55 GDAKLHFLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVW- 113
D F +AF+ N D P +L+ I+ + + L W
Sbjct: 19 KDILSVFEDAFVDNF----DCKDVQDMPKSILSKEEIDHIIMSK----DAVSGTLRLFWT 70
Query: 114 -----ENVLGVNITDAANLEAYKPEELAKQITAKSN--SVTRVGFIGLGAMGFGMATHLL 166
E ++ + + + Y + L I + S+ +I L
Sbjct: 71 LLSKQEEMVQKFVEEVLRIN-Y--KFLMSPIKTEQRQPSMMTRMYIE-------QRDRLY 120
Query: 167 RSNFTVIGYDVYRP-TLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225
N Y+V R K + L+ PA+ V ++ G LG
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQ--ALLELRPAK-----NV-------------LIDGVLG 160
Query: 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE------GKD-------------LKLVDA 266
SG + + +++ ++ F+ L +D
Sbjct: 161 ------SGKTWVALDVCLS---YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 267 PVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQL-- 324
+ +S +L I S+++ L L K Y N L
Sbjct: 212 NWTSRSDHSSNIKLRI------HSIQAELRRL--LKSKPYE--------------NCLLV 249
Query: 325 LAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDI 384
L V A A A ++ L TR F +TD ++ + H TP +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTR--FKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSL 306
Query: 385 FVKDMGIIARECLSQRV----PLHISTIAHQLFLAGSAAGWGR----------------- 423
+K + + L + V P +S IA + A W
Sbjct: 307 LLKYLDCRP-QDLPREVLTTNPRRLSIIA--ESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 424 --QDDAAVVKVYETLS----GVKVEGRLPVLKKEAVLQSLPSEW----PLDPIDDIKGLI 473
+ A K+++ LS + P +L + W D + + L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHI----P----TILLSLI---WFDVIKSDVMVVVNKLH 412
Query: 474 KKNAKTLIVLDDDPTGTQTVHGIEVLTEWSV-------ASLVEQFRKKPLCFFILTNSRA 526
K +L+ T ++ I + + + S+V+ + +
Sbjct: 413 KY---SLVEKQPKE-STISIPSIYLELKVKLENEYALHRSIVDHYNIP----------KT 458
Query: 527 LSSEKASSLITD------ICRNLRTASNSVENTEYTVV----------LRGDSTLRGHFP 570
S+ D I +L+ + T + +V +R DST
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 571 EEADAAVSVLGEMDAWIICPFFLQGGRYTIEDIH-----YVGDLDQLVP 614
+ L ++ + Y I D V + +P
Sbjct: 519 SILN----TLQQLKFY---------KPY-ICDNDPKYERLVNAILDFLP 553
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 5e-13
Identities = 91/585 (15%), Positives = 161/585 (27%), Gaps = 190/585 (32%)
Query: 347 TRVLFNIITDSGGS--------------SWMF-----ENRVPHM-----------LDNDY 376
T LF + ++ E R P M L ND
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 377 TPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETL 436
++ ++ + R+ L + P A + + G G G+ +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRP------AKNVLIDG-VLGSGKT-----WVALDVC 171
Query: 437 SGVKVEGRLP----------VLKKEAV---LQSL-------------PSEWPLDPIDDIK 470
KV+ ++ E V LQ L S I I+
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 471 GLI------KKNAKTLIVLDDDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNS 524
+ K L+VL + V + A F C +LT +
Sbjct: 232 AELRRLLKSKPYENCLLVLLN-------V--------QN-AKAWNAFNLS--CKILLT-T 272
Query: 525 RALSSEKASSLITDICRNLRTASNSVENTEYTVVLRGDSTLR----------GHFPEEAD 574
R +TD T S+++ T L D P E
Sbjct: 273 RFKQ-------VTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 575 A----AVSVLGEM-----DAWIICPFFLQGGRYTIEDIHYV--GDLDQLVPAGDTEFAKD 623
+S++ E W + + + + L+ L PA +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWD---NWKH---VNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 624 ASFGF-KSSNLRE------WVEEKTSG---------------RIPASSVASI-SIQLLRK 660
S F S+++ W + S + P S SI SI L K
Sbjct: 378 LSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 661 GGPDAVCERLCSLQKGSTCI--VNAASERDIAVFAA-----------G--MIQAELKGKS 705
E +L + + + N D G + E +
Sbjct: 437 ----VKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 706 FLCRTAA---SFVSARIGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQ 762
L R F+ +I + A + N ++ L Y+ + E L++
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ---LKFYKPYICDNDPKYERLVNA 547
Query: 763 SGRFIRSVEVSVDKVAMKSLEERQEEIIRAAEMVD---VFLQARK 804
F+ +E ++ + + +++R A M + +F +A K
Sbjct: 548 ILDFLPKIEENL-------ICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 3e-08
Identities = 69/459 (15%), Positives = 142/459 (30%), Gaps = 122/459 (26%)
Query: 485 DDPTGTQTVHGIEVLTEWSVASLVEQFRKKPLCFFILTNSR-ALSSEKASSLITDICRNL 543
D TG ++L+ + F C + + LS E+ ++
Sbjct: 8 DFETGEHQYQYKDILSV-----FEDAFVDNFDCKDVQDMPKSILSKEE--------IDHI 54
Query: 544 RTASNSVENTEY---TVVLRGDSTLRGHFPEEADAAVSVLGEMD-AWIICPFFLQGGRYT 599
+ ++V T T++ + + ++ F EE ++ +++ P + + +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQ-KFVEEVL-------RINYKFLMSPIKTEQRQPS 106
Query: 600 IEDIHYVGDLDQLVPAGDTE-FAKDASFGFKSSNLREWVEEKTSGRIPASSVASISIQLL 658
+ Y+ D+L D + FAK N+ R+ L
Sbjct: 107 MMTRMYIEQRDRL--YNDNQVFAKY--------NVS---------RLQP-------YLKL 140
Query: 659 RKGGPDAVCERLCSLQKGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTAASFVSAR 718
R+ L L+ +++ + G++ + GK+++ A V
Sbjct: 141 RQA--------LLELR----------PAKNVLID--GVLGS---GKTWV---ALD-VCLS 173
Query: 719 IGIVAKAP--ILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDK 776
+ K I +L N L ++ + + S + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 777 VAMKSLEERQEE--II----RAAEMVDVF-LQARKDTLLITSRVLIT------------- 816
+ + E ++ + A+ + F L + LL T +T
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK--ILLTTRFKQVTDFLSAATTTHISL 291
Query: 817 -----GKTPSESLEINLKVSSAMVEIVRR--ITTRPRYILAKGGITSSDIAT----KALE 865
TP E + LK + + R +TT PR + +AT K +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 866 AKR-AKVVGQALAGVPLWELGP-ESRHPGVPYVVFPGNV 902
+ ++ +L L P E R VFP +
Sbjct: 352 CDKLTTIIESSLN-----VLEPAEYRKMFDRLSVFPPSA 385
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 2e-07
Identities = 28/204 (13%), Positives = 64/204 (31%), Gaps = 52/204 (25%)
Query: 794 EMVDVFLQA------RKDTLLITSRVLITGKTPSESLEINLKVSSAMVEIVRRITTRPRY 847
+++ VF A KD + +L + E I + A+ +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSIL----SKEEIDHI-IMSKDAV--------SGTLR 66
Query: 848 ILAKGGITSSDIATKALEAKRAKVVGQALAGVP------LWE-LGPESRHPGVPYVVFPG 900
+ L +K+ ++V + + V L + E R P + ++
Sbjct: 67 LF--------WT----LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-- 112
Query: 901 NVGDNNAVANVVRSWA-----RPVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAA 955
+ + + N + +A R ++ LL + + + + G A
Sbjct: 113 -IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL----IDGVLGSGKTWVA 167
Query: 956 AEEERSPAILQVRSTCFKVQYITL 979
+ S + FK+ ++ L
Sbjct: 168 LDVCLSYKVQCKMD--FKIFWLNL 189
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} Length = 306 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 924 TKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
LL A +A+ A VYN+EG+ A++ AAE +RSPA++ +
Sbjct: 15 ALPLLTFARTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILL 58
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* Length = 305 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-16
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
+ E+L A + Y VGAFNV NME ++AV+ AAEE+RSP IL +
Sbjct: 4 TGLEILKKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILAL 48
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 Length = 286 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
STK LL +A+ YAV AFN++N E ++A++ E RSP IL
Sbjct: 5 STKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAG 49
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} Length = 288 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
S KE+L A +G+YAVG FN+ N+E +A++AAAEEE+SP IL V
Sbjct: 8 SMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGV 52
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* Length = 307 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 4e-16
Identities = 20/45 (44%), Positives = 24/45 (53%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
E+LL A K Y VGAFN N E + A+ A EE SP +Q
Sbjct: 4 KGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQA 48
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* Length = 323 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 7e-16
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
+ +++L A K +Y VGAFNV NME ++ ++ A + +SP ILQ
Sbjct: 5 TLRQMLGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQC 49
|
| >1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A Length = 358 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 5e-12
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 924 TKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
+++ A++ +A+ A N + + AV+ A + ++P I+Q
Sbjct: 17 VQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQF 60
|
| >3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A* Length = 349 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 925 KELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
E+L A++ YA A N + E V A + + S I+Q
Sbjct: 10 AEMLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQF 52
|
| >3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} Length = 357 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 7e-11
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 925 KELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
++ A+ +A+ A NV + + AV+ AA++ SP I+Q
Sbjct: 21 NKIYDYAKAEGFAIPAVNVVGTDSINAVLEAAKKVNSPVIIQF 63
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGV 205
V +G G MG + + S + ++ + Q + G+ + V
Sbjct: 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGM-GIPLTDGDGWIDEADV 70
Query: 206 LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSP 244
+V+ + + + + D+ V + G +++ +P
Sbjct: 71 VVLALPDNIIEK--VAEDI--VPRVRPGTIVLILDAAAP 105
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 46/221 (20%), Positives = 76/221 (34%), Gaps = 44/221 (19%)
Query: 135 LAKQITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIAN 194
+ ++G IGLG MG M L + + YD+ + + G A
Sbjct: 11 VDLGTENLYFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGAR 70
Query: 195 SPAEAAKDV---GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPG----FV 247
S E + V+ +MV +S+L + L++ +I G +
Sbjct: 71 SIEEFCAKLVKPRVVWLMVPAAV-VDSML-QRM--TPLLAANDIVI------DGGNSHYQ 120
Query: 248 SQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALS----- 302
+ R Q + + VD SGG+ G +M G +++++ V L+
Sbjct: 121 DDIRRADQMRAQGITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAPGIGA 179
Query: 303 --------------EKLYVIKGGCGAGSGVKMANQLLAGVH 329
E Y+ G GAG VKM VH
Sbjct: 180 APRTPGREKREGTAELGYLHCGPSGAGHFVKM-------VH 213
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 141 AKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN----VGGLIANSP 196
+S T + IG G + +A L R F ++ VY T + V
Sbjct: 5 KRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQ--VYSRTEESARELAQKVEAEYTTDL 62
Query: 197 AEAAKDVGVLVIMVTNEAQAE 217
AE + ++ + + A AE
Sbjct: 63 AEVNPYAKLYIVSLKDSAFAE 83
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-06
Identities = 23/138 (16%), Positives = 37/138 (26%), Gaps = 8/138 (5%)
Query: 143 SNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKD 202
+ +VG +G G +AT L+ S F V+ + + EA
Sbjct: 25 PDEAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSS 83
Query: 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLK 262
V+ + V E + D A I++ + R E
Sbjct: 84 PEVIFVAVFREHYSSLCSLSDQLA-------GKILVDVSNPTEQEHLQHRESNAEYLASL 136
Query: 263 LVDAPVSGGVKRASMGEL 280
V S L
Sbjct: 137 FPTCTVVKAFNVISAWTL 154
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 6e-06
Identities = 27/216 (12%), Positives = 67/216 (31%), Gaps = 24/216 (11%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ---NVGGLIANSPAEAAKDVG 204
+ F+G G + L+ + + + ++ + + V G A + + + G
Sbjct: 4 VLNFVGTGTLTRFFL-ECLKDRYEIGY--ILSRSIDRARNLAEVYGGKAATLEKHPELNG 60
Query: 205 VLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264
V+ ++V + + +L A ++ S + + R
Sbjct: 61 VVFVIVPDRYIKTVANHLNL-------GDAVLVHCSGFLSSEIFKKSGRASI-----HPN 108
Query: 265 DAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGA---GSGVKMA 321
+ S ++ G E L + +S K +VI + V +
Sbjct: 109 FSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIAS 168
Query: 322 NQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS 357
N V +A ++ + L ++ ++
Sbjct: 169 NFP---VALAYLSKRIYTLLGLDEPELLIHTLMKGV 201
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 42/200 (21%), Positives = 67/200 (33%), Gaps = 34/200 (17%)
Query: 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF-QNVGGLIANSPAEAAKDVGVLV 207
VG +GLG MG +A ++ F V ++ +F + +A + +
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63
Query: 208 ----------IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFE 257
I+V A +S + L G ++ + F Q R Q E
Sbjct: 64 ASLKKPRKALILVQAGAATDSTI-EQL--KKVFEKGDILVDTGNAH--FKDQGRRAQQLE 118
Query: 258 GKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL--------YVIK 309
L+ + +SGG + A G GT + ++ A + K
Sbjct: 119 AAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMN-- 175
Query: 310 GGCGAGSGVKMANQLLAGVH 329
G GAGS VKM H
Sbjct: 176 GSGGAGSCVKM-------YH 188
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 9e-05
Identities = 42/205 (20%), Positives = 74/205 (36%), Gaps = 39/205 (19%)
Query: 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKD-V 203
+ G +G+ MG +A ++ +TV Y+ + + ++ V
Sbjct: 4 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFV 63
Query: 204 GVL------VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPG----FVSQLERR 253
G L ++MV A ++ + L + L G +I G F + R
Sbjct: 64 GSLEKPRRIMLMVQAGAATDATI-KSL--LPLLDIGDILI------DGGNTHFPDTMRRN 114
Query: 254 LQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL-------- 305
+ + + VSGG K A +G ++M G +E+ + ++ K
Sbjct: 115 AELADSGINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCV 173
Query: 306 -YVIKGGCGAGSGVKMANQLLAGVH 329
Y+ G GAG VKM VH
Sbjct: 174 AYM--GANGAGHYVKM-------VH 189
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 140 TAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEA 199
S V G G G + +L+ ++V+ + G +EA
Sbjct: 13 VDSSEKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLL--PRGAEVLCYSEA 70
Query: 200 AKDVGVLVIMVTNEAQAE 217
A V+V+ V E
Sbjct: 71 ASRSDVIVLAVHREHYDF 88
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 45/204 (22%), Positives = 76/204 (37%), Gaps = 38/204 (18%)
Query: 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKD-V 203
S ++G +G+ MG +A ++ +TV ++ R + P K+ V
Sbjct: 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFV 73
Query: 204 GVL------VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPG----FVSQLERR 253
L ++MV A ++ + L L G II G F + R
Sbjct: 74 ESLETPRRILLMVKAGAGTDAAI-DSL--KPYLDKGDIII------DGGNTFFQDTIRRN 124
Query: 254 LQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL-------- 305
+ + + VSGG + A G +IM G +E+ + +L+ ++
Sbjct: 125 RELSAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTKIAAVAEDGEPCVT 183
Query: 306 YVIKGGCGAGSGVKMANQLLAGVH 329
Y+ G GAG VKM VH
Sbjct: 184 YI--GADGAGHYVKM-------VH 198
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 6e-04
Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF-QNVGGLIANSPAEAAKDVGVL 206
++G IG+G M + L ++ +I + + + A S + V ++
Sbjct: 5 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLV 64
Query: 207 VIMV 210
++ +
Sbjct: 65 ILGI 68
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 988 | |||
| 3dqq_A | 421 | Putative tRNA synthase; structural genomics, unkno | 100.0 | |
| 1yzy_A | 413 | Hypothetical protein HI1011; putative tRNA synthas | 100.0 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 100.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 100.0 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 100.0 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 100.0 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 100.0 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.97 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.97 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.97 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.97 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.97 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.97 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.97 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.96 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.96 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.96 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.96 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.96 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.95 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.95 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.92 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.87 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.86 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.86 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.84 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.84 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.83 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.83 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.83 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.83 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.82 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.82 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.82 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.81 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.81 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.78 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.76 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.75 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.75 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.75 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.75 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.74 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.73 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.71 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.7 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.7 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.69 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.69 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.68 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.68 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.68 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.64 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.64 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.63 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.63 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.63 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.62 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.62 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.61 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.61 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.61 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.59 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.57 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.57 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.55 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.55 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.55 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.54 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.54 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.54 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.29 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.53 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.52 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.49 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 99.48 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.47 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 99.46 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 99.45 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 99.44 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.43 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.42 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 99.42 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.38 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.35 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.33 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.33 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.32 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.27 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.27 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.27 | |
| 3elf_A | 349 | Fructose-bisphosphate aldolase; zinc enzyme, dihyd | 99.25 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.25 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 99.23 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.18 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.16 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.15 | |
| 1dos_A | 358 | Aldolase class II; lyase, classii fructose 1,6-bis | 99.11 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.11 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.09 | |
| 3qm3_A | 357 | Fructose-bisphosphate aldolase; structural genomic | 99.08 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.08 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.08 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.07 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.07 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.06 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.06 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.05 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.05 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.05 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.04 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.04 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.03 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.03 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.02 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.01 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.01 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.0 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.0 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.0 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.98 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.97 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.97 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.97 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.96 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.95 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.95 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.94 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.92 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.91 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.91 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.88 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 98.88 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.86 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.86 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.85 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.84 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.82 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.81 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.77 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.73 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.71 | |
| 3txv_A | 450 | Probable tagatose 6-phosphate kinase; structural g | 98.69 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.69 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.68 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.63 | |
| 2fiq_A | 420 | Putative tagatose 6-phosphate kinase 1; structural | 98.57 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.56 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.55 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.53 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.52 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.49 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.49 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.48 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.47 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.46 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.44 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.43 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.42 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.41 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.4 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.4 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.37 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.35 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.34 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.33 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.33 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 98.32 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.31 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.29 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.29 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.29 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.27 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.26 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.25 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.24 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.24 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.23 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.21 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.19 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.19 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.18 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.18 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.18 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.17 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.16 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.16 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.16 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.15 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.14 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.13 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.13 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.12 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.11 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.09 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.09 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.09 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.08 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.06 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.03 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.0 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.0 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.99 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.99 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.99 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.99 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.99 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 97.97 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.96 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.96 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.95 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.95 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.94 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.94 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.89 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.89 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.88 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.87 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.87 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.87 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.87 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.86 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.86 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.85 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.84 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.84 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.83 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.82 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 97.82 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.8 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.8 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.8 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.79 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 97.78 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.77 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.77 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.76 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.76 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.75 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.74 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.73 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.73 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.72 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.72 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.7 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.69 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.69 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.69 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 97.69 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.68 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.68 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.67 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 97.66 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.65 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.64 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.62 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.62 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.61 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.59 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.59 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.59 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.55 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.54 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.54 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.53 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.53 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 97.52 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.5 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.5 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 97.5 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.5 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 97.5 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.48 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.48 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.46 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 97.45 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.44 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.42 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.39 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.36 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.34 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.34 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.33 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.32 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.31 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.31 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.28 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.27 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.27 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.27 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.25 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.23 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.2 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.19 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.12 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.1 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.09 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.07 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.06 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.05 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.04 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.04 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.04 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.01 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.99 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.92 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.87 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.84 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.82 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.81 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.78 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.77 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 96.73 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 96.72 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.71 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.71 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.71 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.7 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.69 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.66 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 96.58 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.57 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.57 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.56 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 96.56 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.55 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.52 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.5 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 96.49 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.48 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 96.47 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.46 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.42 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.4 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.4 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.38 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.36 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 96.34 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 96.33 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.32 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.3 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.29 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.27 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.26 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.26 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 96.25 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 96.24 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 96.23 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.21 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.21 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.2 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 96.2 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 96.19 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.17 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 96.15 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.15 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.05 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 96.02 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.0 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.0 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 95.93 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 95.8 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 95.77 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 95.77 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.75 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 95.65 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 95.65 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 95.63 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 95.58 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.56 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 95.53 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.51 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.5 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.47 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 95.47 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 95.46 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 95.46 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.46 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 95.43 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.35 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.35 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 95.16 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 95.11 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.01 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 94.97 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 94.92 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 94.91 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 94.88 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 94.82 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 94.78 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 94.72 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 94.71 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 94.68 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 94.68 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 94.64 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 94.64 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 94.63 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 94.63 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 94.63 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 94.61 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 94.52 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 94.52 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 94.46 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 94.37 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 94.34 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 94.33 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 94.16 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 94.02 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 94.01 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 93.97 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 93.92 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 93.91 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 93.73 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 93.65 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 93.61 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 93.59 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 93.57 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 93.56 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 93.55 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.55 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 93.49 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 93.48 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 93.43 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 93.41 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 93.4 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 93.34 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 93.32 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.3 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 93.25 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 93.22 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 93.17 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 93.14 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 93.09 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 93.04 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.04 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 92.98 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.96 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.96 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 92.95 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 92.95 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 92.93 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.91 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 92.9 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.85 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 92.7 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 92.68 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 92.68 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 92.67 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 92.61 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 92.6 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.59 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 92.55 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 92.53 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 92.51 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 92.46 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 92.45 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 92.45 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 92.42 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 92.42 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 92.38 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.35 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 92.35 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 92.32 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 92.31 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 92.29 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 92.29 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 92.2 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 92.19 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 92.12 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 92.12 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 92.06 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 92.05 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 92.04 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 91.99 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 91.97 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 91.96 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 91.96 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 91.93 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 91.91 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 91.89 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 91.85 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 91.82 |
| >3dqq_A Putative tRNA synthase; structural genomics, unknown function, center for structural genomics of infecti diseases; 2.70A {Salmonella typhimurium} SCOP: c.146.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-79 Score=704.06 Aligned_cols=407 Identities=17% Similarity=0.161 Sum_probs=344.9
Q ss_pred CcEEEEecCCCCccccc------ccceeEeecChhhHHHhhccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHHhcccc
Q 001973 477 AKTLIVLDDDPTGTQTV------HGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDICRNLRTASNSV 550 (988)
Q Consensus 477 ~~~~~iiaDD~TGa~~~------~g~~~~~~~~~~~~~~~~~~~~dvvvi~T~SR~l~~~~A~~~v~~~~~~l~~~~~~~ 550 (988)
|++++|||||||||+|+ +|+++.+.++.+.. ....++|+++|+||||+++|++|++++++++++|++.+++
T Consensus 2 M~~l~vIADDfTGA~D~~~~l~~~G~~t~~~~~~p~~--~~~~~~d~~vi~t~SR~l~~~eA~~~~~~a~~~l~~~~~~- 78 (421)
T 3dqq_A 2 MLKIGVIADDFTGATDIASFLVENGMPTVQINDVPTG--TQPEGCDAVVISLKTRSCPAQEAIKQSLAALVWLKKQGCQ- 78 (421)
T ss_dssp CCCEEEEESSHHHHHHHHHHHHHTTCCEEEEESSCCS--CCCSSCSEEEEECSCSSSCHHHHHHHHHHHHHHHHHTTCS-
T ss_pred CcEEEEEecCcccHHHHHHHHHHCCCcEEEEeCCCCc--cccCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCC-
Confidence 67899999999999998 89999999886421 2234789999999999999999999999999999998875
Q ss_pred CCCeEEEEeccCCCCCCCchhHHHHHHhhhCCCCEEEEeccccCCCeEEECcEEEEecCCceeecCCCccccCCCCCCCC
Q 001973 551 ENTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKS 630 (988)
Q Consensus 551 ~~~~~~i~kkiDSTLRGnig~Ei~a~~~~~~~~~~~~v~PAfP~~GR~t~~G~~~v~g~~~~~pl~et~~a~Dp~~Pv~~ 630 (988)
..+|++|||||||||||||+|++|+++++|+ +.++||||||++||||++|+|||+| +||+||+|++||+|||++
T Consensus 79 -~~~~K~cSr~DSTlRGnig~e~dal~~~lg~-~~~vv~PAfP~~GR~t~~G~~~v~g----~pl~et~~a~dp~tP~~~ 152 (421)
T 3dqq_A 79 -QVYFKYCSTFDSTAEGNIGPVTDALMVALDT-SFTVISPALPVNGRTVYQGYLFVMN----HLLAESGMRHHPINPMTD 152 (421)
T ss_dssp -EEEEECCTTCCCBTTBSHHHHHHHHHHHTTC-SCEEEECCBGGGTEEEETTEEEETT----EEGGGSGGGGCSSSCCCC
T ss_pred -EEEEEEecCccCCCCCCcHHHHHHHHHHhCC-CeEEEEcccccCCcEEECCEEEECC----EEcCCCccccCCCCCCCc
Confidence 3566677789999999999999999999997 7999999999999999999999999 999999999999999999
Q ss_pred CcHHHHHHhHcCCCCCCCceeEEehHHHhccChhHHHHHHhccc--CCCeEEEecCChhHHHHHHHHHHHHHHcCCcEEE
Q 001973 631 SNLREWVEEKTSGRIPASSVASISIQLLRKGGPDAVCERLCSLQ--KGSTCIVNAASERDIAVFAAGMIQAELKGKSFLC 708 (988)
Q Consensus 631 s~l~~~l~~q~~~~~~~~~v~~i~l~~v~~~~~~~~~~~l~~~~--~~~i~V~Da~t~~dL~~ia~a~~~~~~~~~~~l~ 708 (988)
|+|+++|++||+++ |++|++++|++ +.+.+.++|.++. +.+++||||+|++||+.|++++. ..+ |+
T Consensus 153 s~l~~~l~~qt~~~-----v~~i~l~~v~~-g~~~~~~~l~~l~~~g~~~vV~DA~~~~DL~~ia~a~~-----~~~-l~ 220 (421)
T 3dqq_A 153 SYLPRLMEAQAQGR-----CGVIPAQTLDE-GVAATRAALSRLQQEGYRYAVLDALNERHLEIQGEVLR-----DAP-LV 220 (421)
T ss_dssp CBHHHHHHTTSSSC-----EEEECHHHHHH-CHHHHHHHHHHHHHTTCSEEEECBSSHHHHHHHHHHHT-----TCS-EE
T ss_pred cHHHHHHHHHhCCC-----EEEEEHHHHhc-cHHHHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHh-----cCC-EE
Confidence 99999999999874 99999999999 6888999998775 45899999999999999999882 334 67
Q ss_pred EcchHHHHHHhcccccCCCCccccccccCCCceEEEEeccccccHHHHHHHHhhcCCcEEEEEEehhHHHhhchHhHHHH
Q 001973 709 RTAASFVSARIGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMKSLEERQEE 788 (988)
Q Consensus 709 vg~agl~~~L~~~~~~~~~~~~~~~~~~~~~~~L~v~GS~s~~T~~Qi~~l~~~~~~~~~~i~~~~~~ll~~~~~~~~~~ 788 (988)
+|++||+.+|++.+...+..+......+..+|+|+||||+|++|++|+++++++ +..+++|+++++++ ...+.+
T Consensus 221 ~G~sGla~aL~~~~~~~~~~~~~~~~~~~~~~~lvv~GS~s~~T~~Ql~~l~~~----~~~i~ld~~~l~~~--~~~~~~ 294 (421)
T 3dqq_A 221 TGGSGLAMGLARQWAKHGVSQARSAGYPLSGRAVVLSGSCSQMTNQQVAFYRQH----APTRDVDVARCLSS--ETREAY 294 (421)
T ss_dssp EESHHHHHHHHHHHHTTCCC--CGGGSCCSSCEEEEECCCSHHHHHHHHHHTTT----SCEEECCGGGSSSH--HHHHHH
T ss_pred EEcHHHHHHHHHHhhhcccccccccccCCCCcEEEEECCCCHHHHHHHHHHHhc----CCEEEeCHHHHhCC--chHHHH
Confidence 999999999987654332211111223456789999999999999999999754 46799999999852 234567
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCccccc---CCccchHHHHHHHHHHHHHHHHHhhc-CcceeeeccccchHHHHHhhc
Q 001973 789 IIRAAEMVDVFLQARKDTLLITSRVLITG---KTPSESLEINLKVSSAMVEIVRRITT-RPRYILAKGGITSSDIATKAL 864 (988)
Q Consensus 789 ~~~~~~~~~~~l~~~~~~vi~t~~~~~~~---~~~~~~~~~~~~i~~~l~~i~~~~~~-~~~~li~tGGdTs~~v~~~~L 864 (988)
++++.+++.+. .++++++|||++..... .......+++++|++.|++|++++.. ++++||++|||||++++ ++|
T Consensus 295 ~~~~~~~~~~~-~~~~~~lv~ts~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~~l~~~~~~~livaGGdTs~~v~-~~L 372 (421)
T 3dqq_A 295 AEALAQWVLSQ-DSELAPMISATASTQALAAIQQQYGATEASHAVEALFSLLAARLAEGGITRFIVAGGETSGVVT-QSL 372 (421)
T ss_dssp HHHHHHHHHHC-CCSSCCEEECTTGGGHHHHHSTTCCCCCCCHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHH-HHT
T ss_pred HHHHHHHHHhc-CCCCCEEEEECCChhhhHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCHHHHHHH-HHh
Confidence 77887777665 44456899998754321 11222335688999999999999976 89999999999999996 899
Q ss_pred cccceEEecccccCCcEEEcCCCCCCCCCcEEecCCCCCChhHHHHHHHHhc
Q 001973 865 EAKRAKVVGQALAGVPLWELGPESRHPGVPYVVFPGNVGDNNAVANVVRSWA 916 (988)
Q Consensus 865 g~~~~~~~~ei~pGvp~~~~~~~g~~~gl~ivtK~G~fG~~~~l~~~~~~l~ 916 (988)
|++++++.+||+|||||+++. ++ +++|+|||||||++|+|.+++++|.
T Consensus 373 g~~~l~i~~ei~PGvp~~~~~-~~---~l~vv~K~G~fG~~d~l~~~~~~l~ 420 (421)
T 3dqq_A 373 GITGFHIGPCISPGVPWVNAL-HA---PVSLALKSGNFGDESFFIRAQREFQ 420 (421)
T ss_dssp TCCEEEEEEEEETTEEEEEES-SS---SCEEEEECTTCSCTTHHHHHHHTCC
T ss_pred CCCeeeecccccCCcEEEEEC-CC---CeEEEEecCCCCCHHHHHHHHHHhc
Confidence 999999999999999999997 32 7999999999999999999999873
|
| >1yzy_A Hypothetical protein HI1011; putative tRNA synthase, structural genomics, PSI, protein structure initiative; 2.10A {Haemophilus influenzae} SCOP: c.146.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-79 Score=699.59 Aligned_cols=401 Identities=17% Similarity=0.189 Sum_probs=345.9
Q ss_pred EEEEecCCCCccccc------ccceeEeecChhhHHHhhccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHHhccccCC
Q 001973 479 TLIVLDDDPTGTQTV------HGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDICRNLRTASNSVEN 552 (988)
Q Consensus 479 ~~~iiaDD~TGa~~~------~g~~~~~~~~~~~~~~~~~~~~dvvvi~T~SR~l~~~~A~~~v~~~~~~l~~~~~~~~~ 552 (988)
+++|||||||||+|+ +|+++.+.++.+.. ....++|+++|+||||+++|++|+++++++++++++.+++ .
T Consensus 1 ~l~vIADDfTGA~D~~~~l~~~G~~t~~~~~~~~~--~~~~~~d~vvi~t~SR~l~~~eA~~~~~~~~~~l~~~g~~--~ 76 (413)
T 1yzy_A 1 MLGVIADDFTGASDIASFLVENGLSTVQMNGVPTQ--SLNSKVDAIVISLKSRSNPVNEAIEQSLRAYQWLKENGCT--Q 76 (413)
T ss_dssp -CEEEESSHHHHHHHHHHHHTTTCCEEEEESCCSS--CCCSCCSEEEEECCCSSSCHHHHHHHHHHHHHHHHHTTCC--S
T ss_pred CEEEEecCCccHHHHHHHHHHCCCeEEEEeCCCCc--ccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhcCCC--e
Confidence 378999999999997 89999999987532 1335789999999999999999999999999999998866 4
Q ss_pred CeEEEEeccCCCCCCCchhHHHHHHhhhCCCCEEEEeccccCCCeEEECcEEEEecCCceeecCCCccccCCCCCCCCCc
Q 001973 553 TEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSN 632 (988)
Q Consensus 553 ~~~~i~kkiDSTLRGnig~Ei~a~~~~~~~~~~~~v~PAfP~~GR~t~~G~~~v~g~~~~~pl~et~~a~Dp~~Pv~~s~ 632 (988)
.+|+||||||||||||||+|++|+++++|+ +.++||||||++||||++|+|||+| +|++||+|++||+|||++|+
T Consensus 77 ~~~k~csr~DSTlRGnig~e~dal~~~~g~-~~~iv~PAfP~~GR~t~~G~~~v~~----~pl~et~~a~dp~tP~~~s~ 151 (413)
T 1yzy_A 77 FYFKYCSTFDSTAKGNIGPVTDALLDELNE-DFTVITPALPVNGRTIFNGYLFVGD----VLLSESGMKNHPITPMVDAN 151 (413)
T ss_dssp EEEECCTTCCCCTTCTHHHHHHHHHHHHTC-CCEEECCCBGGGTEEEETTEEEETT----EEGGGSGGGGCSSSCCCCCB
T ss_pred eEEEEecCccCCCCCChHHHHHHHHHHhCC-CcEEEEccccCCCCEEECCEEEECC----EEcCCCccccCCCCCCCchH
Confidence 677888999999999999999999999996 7999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHhHcCCCCCCCceeEEehHHHhccChhHHHHHHhccc--CCCeEEEecCChhHHHHHHHHHHHHHHcCCcEEEEc
Q 001973 633 LREWVEEKTSGRIPASSVASISIQLLRKGGPDAVCERLCSLQ--KGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRT 710 (988)
Q Consensus 633 l~~~l~~q~~~~~~~~~v~~i~l~~v~~~~~~~~~~~l~~~~--~~~i~V~Da~t~~dL~~ia~a~~~~~~~~~~~l~vg 710 (988)
|+++|++|++. +|.+|+++++++ +.+++.++|.++. +.+++||||+|++||+.|++++ .+. .||+|
T Consensus 152 l~~~l~~qt~~-----~v~~i~l~~v~~-g~~~~~~~l~~~~~~g~~~vV~DA~t~~DL~~ia~a~-----~~~-~l~~g 219 (413)
T 1yzy_A 152 LMRLMDAQAKG-----KTGLVAYADVIK-GASRVQECFAELKAQGYRYAVVDAVDNSQLEVLAEAV-----ADF-KLVTG 219 (413)
T ss_dssp HHHHHHHHCSS-----CEEEECHHHHTT-CHHHHHHHHHHHHHTTCSEEEECBSSTHHHHHHHHHT-----TTC-SEEEE
T ss_pred HHHHHHHHhCC-----CEEEEEHHHHhC-CHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHHH-----cCC-cEEEe
Confidence 99999999987 499999999997 7788989988764 3579999999999999999988 234 47899
Q ss_pred chHHHHHHhcccccCCCCccccccccCCCceEEEEeccccccHHHHHHHHhhcCCcEEEEEEehhHHHhhchHhHHHHHH
Q 001973 711 AASFVSARIGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMKSLEERQEEII 790 (988)
Q Consensus 711 ~agl~~~L~~~~~~~~~~~~~~~~~~~~~~~L~v~GS~s~~T~~Qi~~l~~~~~~~~~~i~~~~~~ll~~~~~~~~~~~~ 790 (988)
++||+.+|++.+. .+. +.....+...+|+|+||||+|++|++|+++++++ +..+++|++++++. .++++
T Consensus 220 ~sGla~~La~~~~-~~~-~~~~~~~~~~~~~lvv~GS~s~~T~~Ql~~l~~~----~~~i~ld~~~~~~~-----~~~~~ 288 (413)
T 1yzy_A 220 GSGLGAYMAARLS-GGK-KGTNAFTPTKGKTVVLSGSCSVMTNKQVEKYREK----APHFQLDVEQAIHN-----ENYIE 288 (413)
T ss_dssp SHHHHHHHHHHHH-TSC-CGGGCCCCCSCCEEEEECCCSHHHHHHHHHHTTT----SCEEECCHHHHHHC-----TTHHH
T ss_pred CHHHHHHHHHHhc-cCC-cccccccCCCCcEEEEEecCcHHHHHHHHHHHhh----CCEEEEcHHHhcCC-----hHHHH
Confidence 9999999987553 222 1110112335799999999999999999999865 46799999998742 24577
Q ss_pred HHHHHHHHHHhcCCcEEEEecCcccc--c-CCccchHHHHHHHHHHHHHHHHHhhc-CcceeeeccccchHHHHHhhccc
Q 001973 791 RAAEMVDVFLQARKDTLLITSRVLIT--G-KTPSESLEINLKVSSAMVEIVRRITT-RPRYILAKGGITSSDIATKALEA 866 (988)
Q Consensus 791 ~~~~~~~~~l~~~~~~vi~t~~~~~~--~-~~~~~~~~~~~~i~~~l~~i~~~~~~-~~~~li~tGGdTs~~v~~~~Lg~ 866 (988)
++++++.+.+.++++++|||++.... . .......+++++|++.|+++++++.. ++++||++|||||++++ ++||+
T Consensus 289 ~~~~~~~~~l~~~~~~lv~ts~~~~~~~~~~~~~g~~~~~~~I~~~la~i~~~l~~~~~~~livaGGdTs~~v~-~~Lg~ 367 (413)
T 1yzy_A 289 QLYQWVIANLDSEFAPMVYATVPPDALKAIQHQFGVDQASHAIENTFAKLAAKLKQYGVTNFITAGGETSSIVV-QELGF 367 (413)
T ss_dssp HHHHHHHTTTTSSSCCEEECCCCHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEESHHHHHHHH-HHHTC
T ss_pred HHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhccCCeEEEecCHHHHHHH-HHcCC
Confidence 88888888888999999999885421 1 11123678899999999999999984 89999999999999995 89999
Q ss_pred cceEEecccccCCcEEEcCCCCCCCCCcEEecCCCCCChhHHHHHHHHhc
Q 001973 867 KRAKVVGQALAGVPLWELGPESRHPGVPYVVFPGNVGDNNAVANVVRSWA 916 (988)
Q Consensus 867 ~~~~~~~ei~pGvp~~~~~~~g~~~gl~ivtK~G~fG~~~~l~~~~~~l~ 916 (988)
+++++.+||+||||||++. ++ +++|+||||+||++|+|.+++++|.
T Consensus 368 ~~l~i~~ei~PGvp~~~~~-~~---~l~vv~K~G~fG~~d~l~~~~~~l~ 413 (413)
T 1yzy_A 368 TGFHIGKQIAPGVPWLKAV-EE---DIFLALKSGNFGKEDFFEYAQGMFL 413 (413)
T ss_dssp CEEEEEEEEETTEEEEEES-SS---SCEEEEECTTCSCTTHHHHHHHTTC
T ss_pred CeEEEcCcccCCceEEEEc-CC---CEEEEEecCCCCCHHHHHHHHHHhC
Confidence 9999999999999999997 33 5999999999999999999999873
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=443.56 Aligned_cols=290 Identities=27% Similarity=0.477 Sum_probs=277.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|+||||||+|.||.+||++|.++||+|++|||++++++.+.+.|++.++|+.|+++.||+||+|||++.++++|+++.++
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g 82 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG 82 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSS
T ss_pred cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhh
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeE
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL 305 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v 305 (988)
+.+.+.+|++|||+||++|.+++++++.+.+ +|++|+|+||+|++..+..|++++|+||+++.+++++|+|+.+++++
T Consensus 83 ~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~--~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i 160 (300)
T 3obb_A 83 LLAHIAPGTLVLECSTIAPTSARKIHAAARE--RGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNI 160 (300)
T ss_dssp STTSCCC-CEEEECSCCCHHHHHHHHHHHHT--TTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEE
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHHHhCCCE
Confidence 9999999999999999999999999999987 68999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccc-------cccCCCCCC
Q 001973 306 YVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVP-------HMLDNDYTP 378 (988)
Q Consensus 306 ~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~ 378 (988)
+| +|+.|+++.+|+++|++.+.++.+++|++.++++.|+|++++.++++.+++.||.++.+.| .+..++|.+
T Consensus 161 ~~-~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~ 239 (300)
T 3obb_A 161 FH-AGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSG 239 (300)
T ss_dssp EE-EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCS
T ss_pred EE-eCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCc
Confidence 98 5899999999999999999999999999999999999999999999999999999887766 345678999
Q ss_pred CchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhC
Q 001973 379 YSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSG 438 (988)
Q Consensus 379 ~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g 438 (988)
+|+++.+.||++++.+++++.|+++|+.+.+.++|+++.+.|+|++|++++++++++.+|
T Consensus 240 ~f~~~l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~~~G 299 (300)
T 3obb_A 240 GFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPTQG 299 (300)
T ss_dssp SSBHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTTC-
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998766
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=430.47 Aligned_cols=290 Identities=17% Similarity=0.309 Sum_probs=272.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
.||||||+|+||.+||.+|+++||+|++|||++++++++.+.|+..++|+.|+++.+|+||+|+|++.++++++. ..+
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~--~~~ 83 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFS--MEL 83 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSC--HHH
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHH--HHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999999998875 357
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
.+.+.++++|||+||+.|.+++++++.+.+ +|++|+|+||+|++..+..|++++++||+++.+++++++|+.++++++
T Consensus 84 ~~~~~~~~iiid~sT~~p~~~~~~~~~~~~--~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g~~i~ 161 (297)
T 4gbj_A 84 VEKLGKDGVHVSMSTISPETSRQLAQVHEW--YGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVF 161 (297)
T ss_dssp HHHHCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCSEEE
T ss_pred HhhcCCCeEEEECCCCChHHHHHHHHHHHh--cCCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhhCCeE
Confidence 888999999999999999999999999988 689999999999999999999999999999999999999999999999
Q ss_pred EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCC-CchhhHH
Q 001973 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTP-YSALDIF 385 (988)
Q Consensus 307 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~l~~~ 385 (988)
++++++|+++.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+.+.||.++++.+.+..++|.| +|+++.+
T Consensus 162 ~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~~l~ 241 (297)
T 4gbj_A 162 DFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLG 241 (297)
T ss_dssp ECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBHHHH
T ss_pred EecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCccccCCCCCCccchhHHH
Confidence 865579999999999999999999999999999999999999999999999999999999999999999987 8999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 386 VKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 386 ~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
.||++++.+++++.|+|+|+.+.+.++|+.+.+.|+|++|++++++++++.+|++
T Consensus 242 ~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~~aGl~ 296 (297)
T 4gbj_A 242 LKDINLTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGASDDAGLT 296 (297)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999975
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=383.24 Aligned_cols=288 Identities=25% Similarity=0.399 Sum_probs=276.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+|||+|||+|.||.+||.+|+++||+|++|||++++++.+.+.|+..++++.++++++|+||+|||++.+++.++++++
T Consensus 20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~ 99 (310)
T 3doj_A 20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKG 99 (310)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT
T ss_pred cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCch
Confidence 45799999999999999999999999999999999999999999999999999999999999999999988999998777
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCe
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEK 304 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~ 304 (988)
++.+.+.++++|||+||+.|.+++++.+.+.+ .|.+|+++|+++++..+..|++++++||+++.+++++++|+.+|++
T Consensus 100 ~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~--~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~g~~ 177 (310)
T 3doj_A 100 GVLEQICEGKGYIDMSTVDAETSLKINEAITG--KGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKR 177 (310)
T ss_dssp CGGGGCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEE
T ss_pred hhhhccCCCCEEEECCCCCHHHHHHHHHHHHH--cCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 88899999999999999999999999999887 5799999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhH
Q 001973 305 LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDI 384 (988)
Q Consensus 305 v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~ 384 (988)
+++ +|+.|.++++|+++|++.+.++.+++|++.++++.|+|++++.++++.+++.|+.++++.++++.++|.++|++++
T Consensus 178 ~~~-~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~ 256 (310)
T 3doj_A 178 SFY-LGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKH 256 (310)
T ss_dssp EEE-CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHH
T ss_pred EEE-eCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccHHH
Confidence 888 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Q 001973 385 FVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYET 435 (988)
Q Consensus 385 ~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~ 435 (988)
+.||++++.+++++.|+++|++++++++|+.+.+.|+|++|++++++++++
T Consensus 257 ~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 307 (310)
T 3doj_A 257 QQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKF 307 (310)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999985
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=379.73 Aligned_cols=289 Identities=25% Similarity=0.399 Sum_probs=274.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+|||+|||+|.||..||.+|+++||+|++|||++++.+++.+.|+..++++.++++++|+||+|||++..++.+++++
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~- 108 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ- 108 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT-
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch-
Confidence 4579999999999999999999999999999999999999999999999999999999999999999998999999654
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCe
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEK 304 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~ 304 (988)
++.+.+.++++|||+||+.|.+++++.+.+.+ .|++|+++|+++++..+..|++++++||+++.+++++++|+.+ ++
T Consensus 109 ~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~--~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~-~~ 185 (320)
T 4dll_A 109 GVAAAMKPGSLFLDMASITPREARDHAARLGA--LGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF-GR 185 (320)
T ss_dssp CHHHHCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH-EE
T ss_pred hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHH--cCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhc-CC
Confidence 78889999999999999999999999999887 5799999999999999999999999999999999999999999 88
Q ss_pred EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhH
Q 001973 305 LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDI 384 (988)
Q Consensus 305 v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~ 384 (988)
+++ +|+.|.++++|+++|.+.+.++.+++|++.++++.|+|++++.++++.+.+.||.++++.++++.++|.++|++++
T Consensus 186 ~~~-~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~~~ 264 (320)
T 4dll_A 186 ATH-VGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSI 264 (320)
T ss_dssp EEE-EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBHHH
T ss_pred EEE-eCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcccHHH
Confidence 887 4789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhC
Q 001973 385 FVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSG 438 (988)
Q Consensus 385 ~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g 438 (988)
+.||++++.+++++.|+++|+++++.++|+.+.+.|+|++|++++++++++.+|
T Consensus 265 ~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~ 318 (320)
T 4dll_A 265 QLKDMRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNG 318 (320)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998765
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=375.61 Aligned_cols=288 Identities=42% Similarity=0.699 Sum_probs=271.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-cCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-ANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
+|||+|||+|.||.+||.+|+++||+|++|||++++++.+.+.|... ++++.++++++|+||+|||++..++.++++.+
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~ 86 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED 86 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence 47999999999999999999999999999999999999999999887 89999999999999999999988999998777
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCe
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEK 304 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~ 304 (988)
++.+.++++++|||+||+.|.+.+++.+.+.+ .|.+|+++|+++++..+..|++++++||+++.+++++++|+.++++
T Consensus 87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~--~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~ 164 (303)
T 3g0o_A 87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTA--LNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASN 164 (303)
T ss_dssp CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHT--TTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHHHHHEEE
T ss_pred hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHH--cCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHHHHHCCC
Confidence 88899999999999999999999999998877 5789999999999999999999999999999999999999999999
Q ss_pred EEEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhh
Q 001973 305 LYVIKGG-CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALD 383 (988)
Q Consensus 305 v~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~ 383 (988)
++++ ++ +|.++++|+++|++.++++.+++|++.++++.|+|++++.++++.+.+.||.++++.++++.++|.++|+++
T Consensus 165 ~~~~-~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 243 (303)
T 3g0o_A 165 VYRI-SDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVD 243 (303)
T ss_dssp EEEE-ESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHH
T ss_pred EEEC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCchH
Confidence 9885 55 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHh
Q 001973 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETL 436 (988)
Q Consensus 384 ~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~ 436 (988)
++.||++++.+++++.|+++|++++++++|+++.+.|+|++|++++++++++.
T Consensus 244 ~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 296 (303)
T 3g0o_A 244 IFVKDLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296 (303)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC---
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999988864
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=373.66 Aligned_cols=285 Identities=28% Similarity=0.427 Sum_probs=273.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
|||+|||+|+||.+||.+|+++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|||++.+++.++++.+++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l 81 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV 81 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999998899999877788
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
.+.+.++++|||+||+.|.+.+++.+.+.+ .+.+|+++|+++++..+..|++++++||+++.+++++++|+.++++++
T Consensus 82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~--~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~ 159 (287)
T 3pdu_A 82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTA--RGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCL 159 (287)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEE
T ss_pred hhcccCCCEEEECCCCCHHHHHHHHHHHHH--cCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCEE
Confidence 899999999999999999999999998887 579999999999999999999999999999999999999999999988
Q ss_pred EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHH
Q 001973 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFV 386 (988)
Q Consensus 307 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~ 386 (988)
+ +++.|.++++|+++|++.+.++.+++|++.++++.|+|++++.++++.+.+.||.++++.+++..++|.++|+++++.
T Consensus 160 ~-~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (287)
T 3pdu_A 160 H-LGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQ 238 (287)
T ss_dssp E-CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHH
T ss_pred E-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHHhhccccccCCCCCCCcHHHHH
Confidence 8 578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 001973 387 KDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE 434 (988)
Q Consensus 387 kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~ 434 (988)
||++++.+++++.|+++|++++++++|+++.+.|+|++|+++++++++
T Consensus 239 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pdu_A 239 KDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286 (287)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999875
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=370.53 Aligned_cols=285 Identities=28% Similarity=0.433 Sum_probs=273.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
|||+|||+|.||.+||.+|+++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|||++..++.++++.+++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l 81 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV 81 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence 69999999999999999999999999999999999999999999999999999999999999999998899999877788
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
.+.++++++|||+||+.|.+.+++.+.+.+ .|.+|+++|+++++..+..++++++++|+++.+++++++|+.++.+++
T Consensus 82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~--~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~ 159 (287)
T 3pef_A 82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVA--KGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKII 159 (287)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEE
T ss_pred hhcCCCCCEEEeCCCCCHHHHHHHHHHHHH--hCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCeE
Confidence 899999999999999999999999999887 579999999999999999999999999999999999999999999988
Q ss_pred EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHH
Q 001973 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFV 386 (988)
Q Consensus 307 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~ 386 (988)
+ +|+.|.++++|+++|++.+.++.+++|++.++++.|+|++++.++++.+.+.||.++++.+++..++|.++|+++++.
T Consensus 160 ~-~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (287)
T 3pef_A 160 H-LGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQ 238 (287)
T ss_dssp E-CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHH
T ss_pred E-eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCchHHHH
Confidence 8 588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 001973 387 KDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYE 434 (988)
Q Consensus 387 kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~ 434 (988)
||++++.+++++.|+++|+++.++++|+++.+.|+|++|+++++++++
T Consensus 239 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pef_A 239 KDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286 (287)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGC
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988764
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=350.14 Aligned_cols=269 Identities=27% Similarity=0.347 Sum_probs=252.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+|||+|||+|.||.+||.+|+++||+|++|||++++.+.+.+.|+..+++++++++ +|+||+|||++.+++.++ ++
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~---~~ 90 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV---GE 90 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH---HH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH---HH
Confidence 47999999999999999999999999999999999999999999999999999999 999999999998899988 68
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeE
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL 305 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v 305 (988)
+.+.++++++|||+||+.|.+++++.+.+.+ .+++|+++|+++++..+..+++++++||+++.+++++++|+.+++++
T Consensus 91 l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~--~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~ 168 (296)
T 3qha_A 91 LAGHAKPGTVIAIHSTISDTTAVELARDLKA--RDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVV 168 (296)
T ss_dssp HHTTCCTTCEEEECSCCCHHHHHHHHHHHGG--GTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHHHEEEE
T ss_pred HHHhcCCCCEEEEeCCCCHHHHHHHHHHHHH--cCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHHHcCCe
Confidence 8888999999999999999999999999877 57899999999999999999999999999999999999999999999
Q ss_pred EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH------HHHHHhcCCCccccccccccccCCCCCCC
Q 001973 306 YVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVL------FNIITDSGGSSWMFENRVPHMLDNDYTPY 379 (988)
Q Consensus 306 ~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~------~~~l~~~~~~s~~~~~~~~~~~~~~~~~~ 379 (988)
+++ |++|.++++|+++|.+.+.++.+++|++.++++.|+|++++ .+++..+.+.||..+ .++++.+ |.++
T Consensus 169 ~~~-g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~-~~~~ 244 (296)
T 3qha_A 169 IHA-GEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD--NMKDLEP-DNFL 244 (296)
T ss_dssp EEE-ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS--SCSCCCT-TSTT
T ss_pred EEc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh--chhhhhc-CCCC
Confidence 884 78999999999999999999999999999999999999999 999998888887655 7788888 8899
Q ss_pred chh-----hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCC
Q 001973 380 SAL-----DIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQ 424 (988)
Q Consensus 380 ~~l-----~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~ 424 (988)
|++ +++.||++++.+++++.|+++|+++.++++|+.+.+.|++++
T Consensus 245 f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~ 294 (296)
T 3qha_A 245 YQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEK 294 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC---
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCcccc
Confidence 999 999999999999999999999999999999999999998654
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-39 Score=355.40 Aligned_cols=283 Identities=19% Similarity=0.173 Sum_probs=258.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+|||+|||+|.||.+||.+|+++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|||++.+++.++. .+
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~-~~ 86 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG-MP 86 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT-ST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc-cc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999988999983 22
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCe
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEK 304 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~ 304 (988)
++ ..+.++++|||+||+.|.+++++.+.+.+ .|++|+++|++++++....+.+++++||+++.+++++++|+.++.+
T Consensus 87 ~l-~~~~~g~ivid~st~~~~~~~~l~~~~~~--~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~lg~~ 163 (306)
T 3l6d_A 87 GV-ARALAHRTIVDYTTNAQDEGLALQGLVNQ--AGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGH 163 (306)
T ss_dssp TH-HHHTTTCEEEECCCCCTTHHHHHHHHHHH--TTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHTTCSE
T ss_pred ch-hhccCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHHhcCC
Confidence 44 44578999999999999999999999877 6799999999999988888888999999999999999999999888
Q ss_pred EEEEe--CC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC--CCccccccccccccCCCCCCC
Q 001973 305 LYVIK--GG-CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG--GSSWMFENRVPHMLDNDYTPY 379 (988)
Q Consensus 305 v~~~~--g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~--~~s~~~~~~~~~~~~~~~~~~ 379 (988)
+++ + |+ +|.++.+| .+.+.++.+++|++.++++.|+|++++.++++.+. +.||.++++.++++.++|.++
T Consensus 164 ~~~-~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 238 (306)
T 3l6d_A 164 TVF-LPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGD 238 (306)
T ss_dssp EEE-CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTT
T ss_pred EEE-ecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCC
Confidence 888 5 54 89999999 34456789999999999999999999999999886 689999999999999999875
Q ss_pred -chhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHh
Q 001973 380 -SALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETL 436 (988)
Q Consensus 380 -~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~ 436 (988)
|+++.+.||++++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++.
T Consensus 239 ~~~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~ 296 (306)
T 3l6d_A 239 QARLDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFARE 296 (306)
T ss_dssp SSBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC--
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhH
Confidence 799999999999999999999999999999999999999999999999999988764
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=330.82 Aligned_cols=291 Identities=25% Similarity=0.463 Sum_probs=270.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
|||+|||+|.||..++.+|.++|++|++|||++++.+.+.+.|+...+++.++++++|+||+|+|++.+++.++++.+++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l 85 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 85 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence 69999999999999999999999999999999999999998899888999999999999999999998899988654577
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
.+.+.++++||++|++.|.+.+.+.+.+.+ .+.+|+++|+++++..+..+.+.++++++++.++.++++|+.+|.+++
T Consensus 86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~--~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~ 163 (299)
T 1vpd_A 86 IEGAKPGTVLIDMSSIAPLASREISDALKA--KGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV 163 (299)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHT--TTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEE
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCeE
Confidence 788999999999999999988999998876 578999999999988888888899999999999999999999999888
Q ss_pred EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHH
Q 001973 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFV 386 (988)
Q Consensus 307 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~ 386 (988)
+ .++.|.+.++|+++|.+...++.+++|++.++++.|++++++.+++..+...++.+....+.++.++|.++|+++.+.
T Consensus 164 ~-~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~ 242 (299)
T 1vpd_A 164 H-TGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHI 242 (299)
T ss_dssp E-EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHH
T ss_pred E-eCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCChHHHH
Confidence 7 588999999999999999999999999999999999999999999998887888777777888888888899999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 387 KDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 387 kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
||++.+.++++++|+++|+.++++++++++.+.|+|++||+++++++++.+|.+
T Consensus 243 kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~ 296 (299)
T 1vpd_A 243 KDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKVE 296 (299)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999888765
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=327.92 Aligned_cols=296 Identities=35% Similarity=0.569 Sum_probs=272.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
++|||+|||+|.||..++.+|.+.||+|++|||++++.+.+.+.|+..++++.++++++|+||+|+|.+..++.++.+.+
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~ 82 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPG 82 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcc
Confidence 34799999999999999999999999999999999999999988988889999999999999999999998999985444
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCe
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEK 304 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~ 304 (988)
++.+.+.++++||+++++.|.+.+.+.+.+.+ .+++|+++|+++++..+..|.++++++++++.++.++++|+.+|.+
T Consensus 83 ~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~--~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ll~~~g~~ 160 (301)
T 3cky_A 83 GVLSACKAGTVIVDMSSVSPSSTLKMAKVAAE--KGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKD 160 (301)
T ss_dssp CHHHHSCTTCEEEECCCCCHHHHHHHHHHHHH--TTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEE
T ss_pred hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCC
Confidence 77788999999999999999999999998877 5789999999999877778888889999999999999999999998
Q ss_pred EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccc-cccCCCCCCCchhh
Q 001973 305 LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVP-HMLDNDYTPYSALD 383 (988)
Q Consensus 305 v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-~~~~~~~~~~~~l~ 383 (988)
+++ .++.|.+.++|+++|.+...++.++.|++.++++.|++++++.+++..+...++.+....+ .++.+++.++|+++
T Consensus 161 ~~~-~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 239 (301)
T 3cky_A 161 IYH-VGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMD 239 (301)
T ss_dssp EEE-EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBHH
T ss_pred EEE-eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccHH
Confidence 887 4789999999999999999999999999999999999999999999988777887777778 88899999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCccccC
Q 001973 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKVEG 443 (988)
Q Consensus 384 ~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~~~~ 443 (988)
.+.||++.+.++++++|+++|+.++++++++++.+.|+|+.||+++++++++.+|.++.|
T Consensus 240 ~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~ 299 (301)
T 3cky_A 240 LQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTGVSVSG 299 (301)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHHHHCCCCSC
T ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999998887665
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=323.86 Aligned_cols=292 Identities=25% Similarity=0.423 Sum_probs=267.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+|||+|||+|.||..+|.+|.+.||+|++|| ++++.+.+.+.|+..++++.++++++|+||+|+|.+.+++.++.+.++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~ 81 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHG 81 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTS
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchh
Confidence 3699999999999999999999999999999 999999998889888899999999999999999999988998854336
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeE
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL 305 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v 305 (988)
+.+.+.++++||++++..|.+.+++.+.+.+ .+++|+++|+++++..+..+.++++++++++.++.++++|+.+|.++
T Consensus 82 l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~--~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll~~~g~~~ 159 (295)
T 1yb4_A 82 CAKTSLQGKTIVDMSSISPIETKRFAQRVNE--MGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNI 159 (295)
T ss_dssp STTSCCTTEEEEECSCCCHHHHHHHHHHHHT--TTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEE
T ss_pred HhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCE
Confidence 7778889999999999999999999998876 57899999999988877788888899999999999999999999988
Q ss_pred EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHH
Q 001973 306 YVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIF 385 (988)
Q Consensus 306 ~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~ 385 (988)
++ .++.|.+.+.|+++|.+...++.++.|++.++++.|++++++.+++..+...++.+.++.+.+..+++.++|+++.+
T Consensus 160 ~~-~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 238 (295)
T 1yb4_A 160 TL-VGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALH 238 (295)
T ss_dssp EE-EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSBHHHH
T ss_pred EE-eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCchHHH
Confidence 87 47899999999999999999999999999999999999999999999888777777766677888889999999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCccc
Q 001973 386 VKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441 (988)
Q Consensus 386 ~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~~ 441 (988)
.||++++.+.++++|+++|+.++++++++++.+.|+|++|++++++++++..+.++
T Consensus 239 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~ 294 (295)
T 1yb4_A 239 QKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALELMANHKL 294 (295)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999998877654
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=328.11 Aligned_cols=274 Identities=20% Similarity=0.218 Sum_probs=241.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC-CeEEEEeCCh-------hHHHHHHhcCCcccC-CHHHHhccCcEEEEEcCChHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYR-------PTLTKFQNVGGLIAN-SPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~-------~~~~~l~~~G~~~~~-s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
+|||+|||+|+||.+||.+|+++| |+|++|||++ +..+.+.+.|+ ++ ++.+++++||+||+|||++...
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~ 101 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATK 101 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHH
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHH
Confidence 369999999999999999999999 9999999998 56677777787 66 8999999999999999998876
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHH
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGS 296 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ 296 (988)
+.+ +++.+.++++++|||+||+.|.+.+++.+.+.+ .|.+|+++|++|+ ..+..+++++++||+.+ +++++
T Consensus 102 ~~~----~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~--~g~~~~d~pv~g~-~~a~~g~l~i~vgg~~~--~~~~~ 172 (317)
T 4ezb_A 102 AVA----ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIAT--GKGSFVEGAVMAR-VPPYAEKVPILVAGRRA--VEVAE 172 (317)
T ss_dssp HHH----HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHT--SSCEEEEEEECSC-STTTGGGSEEEEESTTH--HHHHH
T ss_pred HHH----HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEeccCCCC-chhhcCCEEEEEeCChH--HHHHH
Confidence 654 478888999999999999999999999999887 5789999999995 56677889999999987 89999
Q ss_pred HHHhcCCeEEEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC-CCccccccccccccCC
Q 001973 297 VLSALSEKLYVIKGG-CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSG-GSSWMFENRVPHMLDN 374 (988)
Q Consensus 297 ll~~~g~~v~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~ 374 (988)
+|+.++++++++ |+ +|.++++|+++|++.++++++++|++.+|++.|+|++ +++.+..+. +.+| ..+.++++.+
T Consensus 173 ll~~~g~~v~~~-g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~-~~~~l~~~~~~~~~--~~~~~~~~~~ 248 (317)
T 4ezb_A 173 RLNALGMNLEAV-GETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTER-ILDSVQETFPGLDW--RDVADYYLSR 248 (317)
T ss_dssp HHHTTTCEEEEE-ESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCH--HHHHHHHHHH
T ss_pred HHHHhCCCeEEe-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcCccccH--HHhhhhhhcC
Confidence 999999999986 55 9999999999999999999999999999999999995 556666554 3444 4566778888
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHH----HHHHHHcCCC-CCChHHHHHHHHHhh
Q 001973 375 DYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQL----FLAGSAAGWG-RQDDAAVVKVYETLS 437 (988)
Q Consensus 375 ~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~----~~~a~~~g~g-~~d~~a~~~~~~~~~ 437 (988)
+|.++|+ +.||++++.+++++.|+++|+++++.++ |+.+.+.|++ ++||+++++.+....
T Consensus 249 ~~~~g~~---~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~ 313 (317)
T 4ezb_A 249 TFEHGAR---RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARRL 313 (317)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHHHHHHHC
T ss_pred CCCCCcc---hHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhhc
Confidence 8877777 4899999999999999999999999999 7777888997 999999999987653
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=317.61 Aligned_cols=286 Identities=30% Similarity=0.547 Sum_probs=258.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
|||+|||+|.||..++.+|.++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|+|.+..++.++...+.+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~ 80 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI 80 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence 48999999999999999999999999999999999999998898888999999999999999999998899988543345
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
.+.++++++||+++++.+.+.+++.+.+.+ .+..|+++|+++++..+..+.+.++++++++.++.++++|+.+|.+++
T Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~--~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~ 158 (296)
T 2gf2_A 81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEK--MGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVV 158 (296)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTTTEEEEE
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHHHcCCeE
Confidence 667889999999999999999988888876 478899999999988888899899999999999999999999999888
Q ss_pred EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccccccc--ccc-----cCCCCCCC
Q 001973 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRV--PHM-----LDNDYTPY 379 (988)
Q Consensus 307 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~--~~~-----~~~~~~~~ 379 (988)
++ +..|.+.+.|+++|.+..+++.++.|++.++++.|++++++.+++..+.+.++.+.... +.+ ..++|.++
T Consensus 159 ~~-~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g 237 (296)
T 2gf2_A 159 YC-GAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGG 237 (296)
T ss_dssp EE-ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSS
T ss_pred Ee-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCC
Confidence 74 77999999999999999999999999999999999999999999998777777765432 222 34678889
Q ss_pred chhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Q 001973 380 SALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYET 435 (988)
Q Consensus 380 ~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~ 435 (988)
|.++.+.||++++.++++++|+++|++++++++++.+.+.|+|++|++++++++++
T Consensus 238 ~~~~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 293 (296)
T 2gf2_A 238 FGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLRE 293 (296)
T ss_dssp SBHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSC
T ss_pred CchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998764
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=332.73 Aligned_cols=289 Identities=18% Similarity=0.139 Sum_probs=247.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--------------------CCcccCCHHHHhccCcE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--------------------GGLIANSPAEAAKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------------------G~~~~~s~~e~~~~aDv 205 (988)
..+|+|||+|+||++||.+|+++||+|++|||++++++.+++. ++++++++.+++++||+
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv 87 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA 87 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence 3589999999999999999999999999999999999998763 24568899999999999
Q ss_pred EEEEcCChH----------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccc
Q 001973 206 LVIMVTNEA----------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRA 275 (988)
Q Consensus 206 V~l~vp~~~----------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a 275 (988)
||+|||++. .+++++ +++.++++++++||++||+.|++++++.+.+.+.+.+ .+.++.++|.++
T Consensus 88 vii~Vptp~~~~~~~~Dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~---~d~~v~~~Pe~a 161 (446)
T 4a7p_A 88 VFIAVGTPSRRGDGHADLSYVFAAA---REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPN---SGAKVVSNPEFL 161 (446)
T ss_dssp EEECCCCCBCTTTCCBCTHHHHHHH---HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTT---SCCEEEECCCCC
T ss_pred EEEEcCCCCccccCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCC---CCceEEeCcccc
Confidence 999999985 588888 6888999999999999999999999999998875432 567788888888
Q ss_pred cCCCe--------EEEEeCC-HHHHHHHHHHHHhcCCe---EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001973 276 SMGEL--------TIMAAGT-EESLKSTGSVLSALSEK---LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARL 343 (988)
Q Consensus 276 ~~g~l--------~~~~gg~-~~~~~~~~~ll~~~g~~---v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~ 343 (988)
.+|.+ .+++|++ ++.++.++++|+.++.+ +++ .++++.++..|+++|++.++++++++|+..+|++.
T Consensus 162 ~eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~-~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~ 240 (446)
T 4a7p_A 162 REGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVL-FTGRRTSELIKYAANAFLAVKITFINEIADLCEQV 240 (446)
T ss_dssp CTTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEE-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEE-eCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88875 6788875 78999999999998875 355 57999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC
Q 001973 344 GLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGR 423 (988)
Q Consensus 344 Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~ 423 (988)
|+|++++.++++.+...++. ++ ...++|...++.||+.++.+.|++.|+++|+++++.++++.....
T Consensus 241 GiD~~~v~~~~~~~~rig~~-------~l--~pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~~~~~~iN~~~~~~---- 307 (446)
T 4a7p_A 241 GADVQEVSRGIGMDNRIGGK-------FL--HAGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQVNDARKRA---- 307 (446)
T ss_dssp TCCHHHHHHHHHTSTTC----------CC--CCCSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH----
T ss_pred CCCHHHHHHHHhcCCCCCCc-------cC--CCCCCcchhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----
Confidence 99999999999876432221 11 123568889999999999999999999999999999999998877
Q ss_pred CChHHHHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 424 QDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 424 ~d~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+++.+.+..|..+.| ++...||..||++++|
T Consensus 308 -----~~~~i~~~l~~~~~~--------~~v~vlGlafK~~~dD 338 (446)
T 4a7p_A 308 -----MGRKVIKAMGGDVRG--------KTVGILGLTFKPNTDD 338 (446)
T ss_dssp -----HHHHHHHHTTSCCTT--------CEEEEECCSSSTTSCC
T ss_pred -----HHHHHHHHhcccCCC--------CEEEEEEEEeCCCCcc
Confidence 888887777766777 6678888889988888
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=319.40 Aligned_cols=287 Identities=22% Similarity=0.384 Sum_probs=262.6
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
+..|||+|||+|.||..+|.+|++.|++|++|||++++.+.+.+.|....+++.++++++|+||+|+|++..++.++...
T Consensus 28 ~~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~ 107 (316)
T 2uyy_A 28 PTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGP 107 (316)
T ss_dssp CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHST
T ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCc
Confidence 34579999999999999999999999999999999999999988898888899999999999999999988899988543
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSE 303 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~ 303 (988)
.++.+.+.++++||++|+..|...+++.+.+.. .+..|+++|+++++..+..+.+.++++|+++.++.++++|+.+|.
T Consensus 108 ~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~--~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~ 185 (316)
T 2uyy_A 108 SGVLQGIRPGKCYVDMSTVDADTVTELAQVIVS--RGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGK 185 (316)
T ss_dssp TCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEE
T ss_pred hhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHHHhcC
Confidence 345677889999999999999999999988876 468899999999988888898888889999999999999999999
Q ss_pred eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhh
Q 001973 304 KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALD 383 (988)
Q Consensus 304 ~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~ 383 (988)
++++ .++++.+.+.|++.|.+.+.+..++.|++.++++.|++++++.+++..+...++.+....+.++.+++.++|+++
T Consensus 186 ~~~~-~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~ 264 (316)
T 2uyy_A 186 TSFF-LGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLK 264 (316)
T ss_dssp EEEE-CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHH
T ss_pred CEEE-eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcHH
Confidence 8887 588999999999999999999999999999999999999999999998887788777667778888898999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 001973 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVY 433 (988)
Q Consensus 384 ~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~ 433 (988)
.+.||++++++++++.|+++|+.++++++++++.+.|+|++|++++++++
T Consensus 265 ~~~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~ 314 (316)
T 2uyy_A 265 YIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAY 314 (316)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGT
T ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988764
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=323.41 Aligned_cols=270 Identities=17% Similarity=0.190 Sum_probs=237.9
Q ss_pred hcCCCCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCC--hhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHH
Q 001973 141 AKSNSVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVY--RPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 141 m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~--~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~ 217 (988)
|+++.+|||+|||+|.||.+||.+|+++|| +|++|||+ +++.+.+.+.|+..++++.+++++||+||+|||++...+
T Consensus 19 ~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~ 98 (312)
T 3qsg_A 19 YFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALE 98 (312)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHH
T ss_pred cccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHH
Confidence 344456899999999999999999999999 99999997 688888888999999999999999999999999988665
Q ss_pred HHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHH
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSV 297 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 297 (988)
++ +++.+.++++++|||+||+.|.+++++.+.+.+...|.+|+++|+++++.. ..+.++++++|+.+ ++++++
T Consensus 99 -~~---~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~-~~g~l~i~vgg~~~--~~~~~l 171 (312)
T 3qsg_A 99 -VA---QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKP-HGHRVPLVVDGDGA--RRFQAA 171 (312)
T ss_dssp -HH---HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTT-TGGGSEEEEESTTH--HHHHHH
T ss_pred -HH---HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchh-hcCCEEEEecCChH--HHHHHH
Confidence 44 578888999999999999999999999999887433899999999997654 47888999999988 899999
Q ss_pred HHhcCCeEEEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCC
Q 001973 298 LSALSEKLYVIKGG-CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDY 376 (988)
Q Consensus 298 l~~~g~~v~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~ 376 (988)
|+.+|++++++ |+ +|.++++|+++|++.+.++.+++|++.+|++.|+|+ ++.+.+..+. .++.+.++.++++.++|
T Consensus 172 l~~~g~~~~~~-g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~-~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 248 (312)
T 3qsg_A 172 FTLYGCRIEVL-DGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLAD-RVLASLDASF-PEHHLRDLALYLVERNL 248 (312)
T ss_dssp HHTTTCEEEEC-CSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHS-GGGTHHHHHHHHHHHHH
T ss_pred HHHhCCCeEEc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHhcC-CchhHHHhhhHhhcCCC
Confidence 99999999885 65 999999999999999999999999999999999999 5778888776 35666777788888888
Q ss_pred CCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC
Q 001973 377 TPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGR 423 (988)
Q Consensus 377 ~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~ 423 (988)
.++|++ .||++++.+++++.|+++|+++++.++|+++.+.|+++
T Consensus 249 ~~g~~~---~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~ 292 (312)
T 3qsg_A 249 EHADRR---AHELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAAL 292 (312)
T ss_dssp HHHHHH---HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred Ccccch---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCcc
Confidence 888875 79999999999999999999999999999999988765
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=315.83 Aligned_cols=285 Identities=28% Similarity=0.405 Sum_probs=260.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
|||+|||+|.||..++.+|.+ ||+|++|||++++.+.+.+.|+..++ +.++++++|+||+|+|++..++.++ +++
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~---~~l 76 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA---EAL 76 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH---HHH
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH---HHH
Confidence 589999999999999999999 99999999999999998887877766 7888899999999999988788887 567
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
.+.+.++++||++|+..+...+.+.+.+.+ .+.+|+++|+++++..+..|.++++++++++.++.++++| .+|.+++
T Consensus 77 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~--~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~g~~~~ 153 (289)
T 2cvz_A 77 YPYLREGTYWVDATSGEPEASRRLAERLRE--KGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVV 153 (289)
T ss_dssp TTTCCTTEEEEECSCCCHHHHHHHHHHHHT--TTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEE
T ss_pred HhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hhcCCeE
Confidence 778889999999999999999999998876 4788999999998888888888888999999999999999 9998887
Q ss_pred EEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccc-cccCCCCCCCchhhHH
Q 001973 307 VIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVP-HMLDNDYTPYSALDIF 385 (988)
Q Consensus 307 ~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-~~~~~~~~~~~~l~~~ 385 (988)
+ .++.+.+.++|+++|.+...++.++.|++.++++.|++++++.+++..+...++++.+..+ .++.+++.++++++.+
T Consensus 154 ~-~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~~~~~ 232 (289)
T 2cvz_A 154 H-VGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLL 232 (289)
T ss_dssp E-EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHH
T ss_pred E-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHHHHhccchhhcCCCCCCcChHHH
Confidence 7 4788999999999999999999999999999999999999999999988777777777777 7888889899999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 386 VKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 386 ~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
.||++.+.++++++|+++|+.++++++++++.+.|+|++||+++++.+++..|.+
T Consensus 233 ~kd~~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~~~~~~ 287 (289)
T 2cvz_A 233 VKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGGVE 287 (289)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999887754
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=324.03 Aligned_cols=295 Identities=14% Similarity=0.108 Sum_probs=248.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--------------------CCcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--------------------GGLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------------------G~~~~~s~~e~~~~aDvV 206 (988)
|||+|||+|+||.++|.+|+++||+|++||+++++++.+++. ++.+++++.+++++||+|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV 82 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII 82 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence 699999999999999999999999999999999999988762 235678999999999999
Q ss_pred EEEcCChH---------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCc-eEecCcccCCccccc
Q 001973 207 VIMVTNEA---------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDL-KLVDAPVSGGVKRAS 276 (988)
Q Consensus 207 ~l~vp~~~---------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~-~~ldapv~g~~~~a~ 276 (988)
|+|||++. .+++++ +++.++++++++||++||+.|++++++.+.+.+.+.+. ...+.++.++|.++.
T Consensus 83 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~ 159 (450)
T 3gg2_A 83 FIAVGTPAGEDGSADMSYVLDAA---RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLK 159 (450)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCC
T ss_pred EEEcCCCcccCCCcChHHHHHHH---HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhhhc
Confidence 99999984 688887 68889999999999999999999999998887632111 125567777788888
Q ss_pred CCCe--------EEEEeC-CHHHHHHHHHHHHhcCCe--EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 001973 277 MGEL--------TIMAAG-TEESLKSTGSVLSALSEK--LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGL 345 (988)
Q Consensus 277 ~g~l--------~~~~gg-~~~~~~~~~~ll~~~g~~--v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gi 345 (988)
+|.. .+++|+ +++.++.++++|+.++.+ +++ .++++.++++|+++|++.++++++++|+..+|++.|+
T Consensus 160 eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~-~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gi 238 (450)
T 3gg2_A 160 EGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVL-FMDIASAEMTKYAANAMLATRISFMNDVANLCERVGA 238 (450)
T ss_dssp TTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEE-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEE-ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8876 477776 588999999999999862 444 4799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCccccccccccccCCCCC--CCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC
Q 001973 346 NTRVLFNIITDSGGSSWMFENRVPHMLDNDYT--PYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGR 423 (988)
Q Consensus 346 d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~--~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~ 423 (988)
|++++.++++.+.. +....|. ++|...++.||+.++.+.|++.|+++|+++++.++++...+.
T Consensus 239 d~~~v~~~~~~~~r-----------ig~~~~~pg~G~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~iN~~~~~~---- 303 (450)
T 3gg2_A 239 DVSMVRLGIGSDSR-----------IGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNEKQKSI---- 303 (450)
T ss_dssp CHHHHHHHHHTSTT-----------TCSSSCCCSSCCCSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH----
T ss_pred CHHHHHHHHcCCCC-----------CCcccCCCCCCCCcccHHhhHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH----
Confidence 99999999987542 1112223 357889999999999999999999999999999999988776
Q ss_pred CChHHHHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchhhhhHhhhccCcE
Q 001973 424 QDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPIDDIKGLIKKNAKT 479 (988)
Q Consensus 424 ~d~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (988)
+++.+.+..+..+.| ++...||..||++++| .|+.|.
T Consensus 304 -----~~~~~~~~~~~~~~~--------~~v~vlGlafK~~~dD------~R~sp~ 340 (450)
T 3gg2_A 304 -----LFDKFSTYYKGNVQG--------RCVAIWGLSFKPGTDD------MREAPS 340 (450)
T ss_dssp -----HHHHHHHHTTTCCTT--------CEEEEECCSSSTTCCC------CTTCHH
T ss_pred -----HHHHHHHHhcccCCC--------CEEEEEeeeeCCCCcc------cccChH
Confidence 787777776666677 6678889999999888 555553
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=310.38 Aligned_cols=280 Identities=22% Similarity=0.268 Sum_probs=237.0
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccC---cEEEEEcCChHHHHHHHc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDV---GVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~a---DvV~l~vp~~~~~~~vl~ 221 (988)
++|||||||+|.||..||.+|+++||+|++|||++++++.+.+.|+..+++++++++.+ |+||+|||++ .+++++
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl- 98 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML- 98 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH-
T ss_pred cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH-
Confidence 45799999999999999999999999999999999999999999999999999999999 9999999998 799998
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhc
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSAL 301 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~ 301 (988)
+++.+.++++++|||+||+.|.+++++++.+.+ ++++|+++||+|++..+..|. ++++||+++++++++++|+.+
T Consensus 99 --~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~vdapVsGg~~~a~~G~-~im~GG~~~a~~~~~~ll~~l 173 (358)
T 4e21_A 99 --QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRA--QGITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTL 173 (358)
T ss_dssp --HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHT--TTCEEEEEEEECGGGHHHHCC-EEEEESCHHHHHHTHHHHHHH
T ss_pred --HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHH--CCCEEEeCCCCCCHHHHhcCC-eeeecCCHHHHHHHHHHHHHh
Confidence 688889999999999999999999999999877 689999999999999999998 999999999999999999999
Q ss_pred C--------------------CeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------------
Q 001973 302 S--------------------EKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARL------------------ 343 (988)
Q Consensus 302 g--------------------~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~------------------ 343 (988)
+ +++++ +|+.|+++.+|+++|.+.+..+.+++|++.++++.
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~ 252 (358)
T 4e21_A 174 APGIGAAPRTPGREKREGTAELGYLH-CGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRN 252 (358)
T ss_dssp SCCGGGSCCCTTGGGCCSSGGGTEEE-EESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------C
T ss_pred ccccccCcccccccccccccccceEE-ECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence 9 46777 58899999999999999999999999999999998
Q ss_pred ------CCCHHHHHHHHHhcC-CCccccccccccccCCCCCCCc-hhhHHHHHH---HHHHHHHHhCCCCchHHHHHHHH
Q 001973 344 ------GLNTRVLFNIITDSG-GSSWMFENRVPHMLDNDYTPYS-ALDIFVKDM---GIIARECLSQRVPLHISTIAHQL 412 (988)
Q Consensus 344 ------Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~-~l~~~~kDl---~~~~~~a~~~gi~~pi~~a~~~~ 412 (988)
|+|.+++.++++.+. ..||+++.....+.. + |.+ .+....||. ++++..|.+.|+|+|.+.++ +
T Consensus 253 ~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~~-~--p~~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~a--l 327 (358)
T 4e21_A 253 PDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLD-S--PDLQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSA--L 327 (358)
T ss_dssp GGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHHH-C--TTCTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHH--H
T ss_pred chhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHhh-C--CChHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHH--H
Confidence 899999999999887 789988765443322 2 111 122233343 78999999999999999865 3
Q ss_pred HHHHHHcCCCCCChH-HHHHHHHHhhCc
Q 001973 413 FLAGSAAGWGRQDDA-AVVKVYETLSGV 439 (988)
Q Consensus 413 ~~~a~~~g~g~~d~~-a~~~~~~~~~g~ 439 (988)
+.+... .++.+++ .++..++...|.
T Consensus 328 ~~~~~s--~~~~~~~~~l~~a~r~~fG~ 353 (358)
T 4e21_A 328 YERFSS--RGEDDFANRLLSAMRYEFGG 353 (358)
T ss_dssp HHHHHH--TTTTHHHHHHHHHHC-----
T ss_pred HHHHHH--CCCcccHHHHHHHHHHhcCC
Confidence 433333 3556665 488888776664
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=317.24 Aligned_cols=295 Identities=17% Similarity=0.183 Sum_probs=242.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC-CC-eEEEEeCChh----HHHHHHhc---------------------C-CcccCCH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS-NF-TVIGYDVYRP----TLTKFQNV---------------------G-GLIANSP 196 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~-G~-~V~v~dr~~~----~~~~l~~~---------------------G-~~~~~s~ 196 (988)
.+|||+|||+|+||.+||.+|+++ || +|++||++++ +++.+++. | +.++++
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd- 95 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD- 95 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-
Confidence 457999999999999999999999 99 9999999999 98888752 2 234555
Q ss_pred HHHhccCcEEEEEcCChH--------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH-h-cC----CCce
Q 001973 197 AEAAKDVGVLVIMVTNEA--------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ-F-EG----KDLK 262 (988)
Q Consensus 197 ~e~~~~aDvV~l~vp~~~--------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~-~-~~----~g~~ 262 (988)
.+++++||+||+|||++. +++.+....+++.+++++|++||++||+.|++++++++.+. + .+ .++.
T Consensus 96 ~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~d~~ 175 (478)
T 3g79_A 96 FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFA 175 (478)
T ss_dssp GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTTTBE
T ss_pred HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCCcee
Confidence 678999999999999983 34444433378889999999999999999999999987543 2 22 2468
Q ss_pred EecCcccCCcccccCCCe---EEEEeCCHHHHHHHHHHHHhc-CCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001973 263 LVDAPVSGGVKRASMGEL---TIMAAGTEESLKSTGSVLSAL-SEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMA 338 (988)
Q Consensus 263 ~ldapv~g~~~~a~~g~l---~~~~gg~~~~~~~~~~ll~~~-g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~ 338 (988)
++++|++..+..+..+.+ .+++|++++.+++++++|+.+ +.++++ .+++++++.+|+++|++.++++++++|+..
T Consensus 176 v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~-~~~~~~aE~~Kl~~N~~~a~~Ia~~nE~~~ 254 (478)
T 3g79_A 176 LAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVI-PMSATAAEVTKTAENTFRDLQIAAINQLAL 254 (478)
T ss_dssp EEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEE-EEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEE-eCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999888877655443 688899999999999999999 777777 479999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCC--chhhHHHHHHHHHHHHHHhCCCC-------chHHHHH
Q 001973 339 FGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPY--SALDIFVKDMGIIARECLSQRVP-------LHISTIA 409 (988)
Q Consensus 339 la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~--~~l~~~~kDl~~~~~~a~~~gi~-------~pi~~a~ 409 (988)
+|++.|+|++++.+.++... ++ ++....|.|+ |...++.||+.++.+.+++.|++ +++++++
T Consensus 255 l~e~~GiD~~~v~~~~~~~~----~~-----ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~ 325 (478)
T 3g79_A 255 YCEAMGINVYDVRTGVDSLK----GE-----GITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLA 325 (478)
T ss_dssp HHHHTTCCHHHHHHHHHTSC----CS-----SSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHH
T ss_pred HHHHcCCCHHHHHHHHCCCc----hh-----hhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHHHHH
Confidence 99999999999999988642 11 2333445554 46689999999999999999987 8999999
Q ss_pred HHHHHHHHHcCCCCCChHHHHHHHHHhh---CccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 410 HQLFLAGSAAGWGRQDDAAVVKVYETLS---GVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 410 ~~~~~~a~~~g~g~~d~~a~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
.++++..... +++.+.+.. |.++.| ++...||..||++++|
T Consensus 326 ~~iN~~~~~~---------~~~~i~~~l~~~~~~~~~--------~~v~vlGlafK~~tdD 369 (478)
T 3g79_A 326 RKVNDFMPAH---------MYNLTVAALERLGKKMDG--------SKVAMLGWAFIKDSDD 369 (478)
T ss_dssp HHHHHHHHHH---------HHHHHHHHHHTTTCCSTT--------CEEEEECSSSSTTCSC
T ss_pred HHHHHHHHHH---------HHHHHHHHHhhcccCCCC--------CEEEEEeeecCCCCcc
Confidence 9999998876 666665543 335666 6678888899988888
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=315.69 Aligned_cols=266 Identities=20% Similarity=0.235 Sum_probs=234.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCC-----cccCCHHHHhc---cCcEEEEEcCChHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGG-----LIANSPAEAAK---DVGVLVIMVTNEAQA 216 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~-----~~~~s~~e~~~---~aDvV~l~vp~~~~~ 216 (988)
.+|+|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+. ..+++++++++ .+|+||+|||++..+
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 82 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV 82 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHH
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHH
Confidence 3469999999999999999999999999999999999999987632 34689999887 499999999998889
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHH
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGS 296 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ 296 (988)
+.++ +++.+.+.+|++|||+||+.|..+.++.+.+.+ +|++|+++||+|++..+..|. .+|+||++++++++++
T Consensus 83 ~~vl---~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~--~Gi~fvd~pVsGg~~gA~~G~-~im~GG~~ea~~~v~p 156 (484)
T 4gwg_A 83 DDFI---EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKA--KGILFVGSGVSGGEEGARYGP-SLMPGGNKEAWPHIKT 156 (484)
T ss_dssp HHHH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHH
T ss_pred HHHH---HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHh--hccccccCCccCCHHHHhcCC-eeecCCCHHHHHHHHH
Confidence 9998 688899999999999999999999999998887 689999999999999999999 9999999999999999
Q ss_pred HHHhcCCeE-------EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---HhcCCCccccc
Q 001973 297 VLSALSEKL-------YVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLFNII---TDSGGSSWMFE 365 (988)
Q Consensus 297 ll~~~g~~v-------~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~~~l---~~~~~~s~~~~ 365 (988)
+|+.++.++ ++ +|+.|+++.+|+++|.+.++++++++|++.++++ .|+|++++.+++ +.+.+.||+++
T Consensus 157 ll~~ig~~v~~~~~~~~~-~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e 235 (484)
T 4gwg_A 157 IFQGIAAKVGTGEPCCDW-VGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIE 235 (484)
T ss_dssp HHHHHSCBCTTSCBSBCC-CEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHH
T ss_pred HHHHhcCcccCCCceEEE-ECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHH
Confidence 999999887 66 5889999999999999999999999999999999 999999998886 57788999999
Q ss_pred cccccccCCCCCCCchhhHHHHHH------HHHHHHHHhCCCCch-HHHHHHHHHHHHH
Q 001973 366 NRVPHMLDNDYTPYSALDIFVKDM------GIIARECLSQRVPLH-ISTIAHQLFLAGS 417 (988)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~~~kDl------~~~~~~a~~~gi~~p-i~~a~~~~~~~a~ 417 (988)
+..+.+..+|+.+++.++.....+ .+....|.++|+|+| +..++...+..+.
T Consensus 236 ~~~~~l~~~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~~ 294 (484)
T 4gwg_A 236 ITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSL 294 (484)
T ss_dssp HHHHHHHCBCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhhc
Confidence 998888877777657776654332 367788999999999 5566666666553
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=301.16 Aligned_cols=289 Identities=14% Similarity=0.081 Sum_probs=240.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC--------------------CcccCCHHHHhccCcE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG--------------------GLIANSPAEAAKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G--------------------~~~~~s~~e~~~~aDv 205 (988)
.|||+|||+|+||.++|.+|+++||+|++||+++++++.+++.+ +.+++++.+++++||+
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv 87 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV 87 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence 47999999999999999999999999999999999999988752 3456788888999999
Q ss_pred EEEEcCCh---------HHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc-CCCceE-ecCcccCCccc
Q 001973 206 LVIMVTNE---------AQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFE-GKDLKL-VDAPVSGGVKR 274 (988)
Q Consensus 206 V~l~vp~~---------~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~-~~g~~~-ldapv~g~~~~ 274 (988)
||+|||+| ..+++++ +.+.+.++++++||++||+.|++++.+.+.+.+. +.+ .| ++.++.++|.+
T Consensus 88 viiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~~v~~~Pe~ 163 (478)
T 2y0c_A 88 QFIAVGTPPDEDGSADLQYVLAAA---RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKR-GGDQMFSVVSNPEF 163 (478)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHT-TCCCCEEEEECCCC
T ss_pred EEEEeCCCcccCCCccHHHHHHHH---HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCC-CCCccEEEEEChhh
Confidence 99999997 6788888 6788899999999999999999999998888753 112 23 56678888888
Q ss_pred ccCCCe--------EEEEeCC-H----HHHHHHHHHHHhcCC--eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001973 275 ASMGEL--------TIMAAGT-E----ESLKSTGSVLSALSE--KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAF 339 (988)
Q Consensus 275 a~~g~l--------~~~~gg~-~----~~~~~~~~ll~~~g~--~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l 339 (988)
+.+|.. .+++|++ + +..+.++++|+.+.+ .+++ .++++.+++.|++.|.+.++++++++|+..+
T Consensus 164 ~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l 242 (478)
T 2y0c_A 164 LKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTL-YMDVRSAEFTKYAANAMLATRISFMNELANL 242 (478)
T ss_dssp CCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEE-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEE-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888886 5777765 5 788999999998875 4555 4789999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCC--chhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 001973 340 GARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPY--SALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGS 417 (988)
Q Consensus 340 a~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~--~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~ 417 (988)
|++.|+|++++.+.++... ++....+.++ +...++.||++++.+.++++|+++|++++++++++...
T Consensus 243 a~~~Gid~~~v~~~i~~~~-----------rig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~~pl~~~v~~in~~~~ 311 (478)
T 2y0c_A 243 ADRFGADIEAVRRGIGSDP-----------RIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQK 311 (478)
T ss_dssp HHHTTCCHHHHHHHHHTST-----------TTCSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHhcCC-----------ccCcccCCCCcccccCcCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhH
Confidence 9999999999998886321 1222233343 34456789999999999999999999999999999877
Q ss_pred HcCCCCCChHHHHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 418 AAGWGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 418 ~~g~g~~d~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+. +++.+.+..+.++.| ++...||..||++++|
T Consensus 312 ~~---------~~~~~~~~~~~~~~~--------~~v~vlGlafK~~~dD 344 (478)
T 2y0c_A 312 RV---------LADKIVARFGEDLTG--------RTFAIWGLAFKPNTDD 344 (478)
T ss_dssp TH---------HHHHHHHHHCSCCTT--------CEEEEECCSSSSSCCC
T ss_pred HH---------HHHHHHHHhcccCCC--------CEEEEEecccCCCCCc
Confidence 65 777777666656666 5677888899988888
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=305.24 Aligned_cols=256 Identities=21% Similarity=0.263 Sum_probs=234.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----cCCcccCCHHHHhcc---CcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----VGGLIANSPAEAAKD---VGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----~G~~~~~s~~e~~~~---aDvV~l~vp~~~~~~~ 218 (988)
.+|||||+|.||++||.+|+++||+|++|||++++++.+.+ .|+..+++++++++. +|+||+|||++..+++
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~ 90 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDA 90 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHH
T ss_pred CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHH
Confidence 58999999999999999999999999999999999999988 578888999999887 9999999999888999
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVL 298 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 298 (988)
++ +++.+.+.+|++|||+||+.|..++++.+.+.+ .|++|+++|+++++..+..|+ .+++||+++.+++++++|
T Consensus 91 vl---~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~--~g~~~v~~pVsgg~~~a~~G~-~im~gg~~e~~~~v~~ll 164 (497)
T 2p4q_A 91 LI---NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKK--KGILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNIF 164 (497)
T ss_dssp HH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHH
T ss_pred HH---HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHH--cCCceeCCCcccChhHhhcCC-eEEecCCHHHHHHHHHHH
Confidence 98 678889999999999999999999999988877 578999999999999999999 889999999999999999
Q ss_pred HhcCCe------EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hcCCCcccccccc
Q 001973 299 SALSEK------LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLFNIIT---DSGGSSWMFENRV 368 (988)
Q Consensus 299 ~~~g~~------v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~~~l~---~~~~~s~~~~~~~ 368 (988)
+.++.+ +.+ +|+.|.++++|+++|.+.+.++.+++|++.++++ .|++++++.+++. .+...|++++++.
T Consensus 165 ~~~g~~~dGe~~v~~-vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~ 243 (497)
T 2p4q_A 165 QSISAKSDGEPCCEW-VGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITR 243 (497)
T ss_dssp HHHSCEETTEESCCC-CEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHH
T ss_pred HHhcCccCCCCceEE-ECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHH
Confidence 999988 566 5789999999999999999999999999999999 6999999999884 5778899988888
Q ss_pred ccccCCCCCCCchhhHHH-----HHHH-HHHHHHHhCCCCchHHHHH
Q 001973 369 PHMLDNDYTPYSALDIFV-----KDMG-IIARECLSQRVPLHISTIA 409 (988)
Q Consensus 369 ~~~~~~~~~~~~~l~~~~-----kDl~-~~~~~a~~~gi~~pi~~a~ 409 (988)
+.+..+||.++|.++.+. ||++ +..+.++++|+++|++..+
T Consensus 244 ~~l~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~a 290 (497)
T 2p4q_A 244 DILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEA 290 (497)
T ss_dssp HHHTCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHhcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHH
Confidence 778888886678999888 8876 7899999999999998875
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=292.65 Aligned_cols=279 Identities=13% Similarity=0.148 Sum_probs=224.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc------------------CCcccCCHHHHhccCcEE
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV------------------GGLIANSPAEAAKDVGVL 206 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~------------------G~~~~~s~~e~~~~aDvV 206 (988)
.+|||+|||+|+||.++|..|++ ||+|++||+++++++.+++. ++.+++++.+++++||+|
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDvV 113 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYV 113 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCEE
Confidence 35799999999999999999998 99999999999999988762 356788999999999999
Q ss_pred EEEcCChH----------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCccccc
Q 001973 207 VIMVTNEA----------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRAS 276 (988)
Q Consensus 207 ~l~vp~~~----------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~ 276 (988)
|+|||++. .++.++ +++.+ ++++++||++||+.|++++++.+.+.+ . .++.+|+++++..+.
T Consensus 114 iiaVPt~~~~~~~~~Dl~~V~~v~---~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~--~--~v~~sPe~~~~G~A~ 185 (432)
T 3pid_A 114 IIATPTDYDPKTNYFNTSTVEAVI---RDVTE-INPNAVMIIKSTIPVGFTRDIKERLGI--D--NVIFSPEFLREGRAL 185 (432)
T ss_dssp EECCCCEEETTTTEEECHHHHHHH---HHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTC--C--CEEECCCCCCTTSHH
T ss_pred EEeCCCccccccccccHHHHHHHH---HHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhh--c--cEeecCccCCcchhh
Confidence 99999982 577776 67888 899999999999999999999998865 2 456699999999988
Q ss_pred CCCe---EEEEeCCHHHHHHHHHHHHh--cCC--eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 001973 277 MGEL---TIMAAGTEESLKSTGSVLSA--LSE--KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRV 349 (988)
Q Consensus 277 ~g~l---~~~~gg~~~~~~~~~~ll~~--~g~--~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~ 349 (988)
.+.+ .+++|++++.++++.++|.. ++. ++++ ++++.|+++|+++|++.++++++++|+..+|++.|+|+++
T Consensus 186 ~~~l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~~~v~~--~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~GiD~~~ 263 (432)
T 3pid_A 186 YDNLHPSRIVIGERSARAERFADLLKEGAIKQDIPTLF--TDSTEAEAIKLFANTYLALRVAYFNELDSYAESQGLNSKQ 263 (432)
T ss_dssp HHHHSCSCEEESSCSHHHHHHHHHHHHHCSSSSCCEEE--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred hcccCCceEEecCCHHHHHHHHHHHHhhhccCCCeEEe--cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 8777 79999999999999999986 443 3443 6899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHH
Q 001973 350 LFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAV 429 (988)
Q Consensus 350 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~ 429 (988)
+.++++.....+.. +..- ..|+.-.|+.||..++.. +..|++.++++++.++++..... +
T Consensus 264 v~~~~~~dprig~~-------~~~p--g~G~GG~C~pkD~~~L~~--~~~~~~~~li~~~~~~N~~~~~~---------v 323 (432)
T 3pid_A 264 IIEGVCLDPRIGNH-------YNNP--SFGYGGYCLPKDTKQLLA--NYESVPNNIIAAIVDANRTRKDF---------I 323 (432)
T ss_dssp HHHHHHTSTTTCSS-------SCCC--CSCCCTTTHHHHHHHHHH--HTTTSCCSHHHHHHHHHHHHHHH---------H
T ss_pred HHHHHccCCCCCcc-------cCCC--CCCCcccchhhhHHHHHH--HhcCCchhHHHHHHHHHHhhHHH---------H
Confidence 99999865432211 1111 124556788999998864 34699999999999999988776 6
Q ss_pred HHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 430 VKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 430 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
++.+.+.. | ++...||..||++++|
T Consensus 324 ~~~i~~~~-----~--------~~v~vlGlafK~~tdD 348 (432)
T 3pid_A 324 ADSILARK-----P--------KVVGVYRLIMKSGSDN 348 (432)
T ss_dssp HHHHHHTC-----C--------SSEEEECC--------
T ss_pred HHHHHhhc-----C--------CEEEEEeeEeCCCCcc
Confidence 66665532 2 4567888888888888
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=293.46 Aligned_cols=284 Identities=17% Similarity=0.204 Sum_probs=220.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc--------------------ccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL--------------------IANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~--------------------~~~s~~e~~~~aDvV 206 (988)
.|..|||+|+||.+||.+|+++||+|++||+++++++.+++.+.. ++++ +++||+|
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd----~~~aDvv 87 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT----PEASDVF 87 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS----CCCCSEE
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc----hhhCCEE
Confidence 489999999999999999999999999999999999999874322 2222 3579999
Q ss_pred EEEcCChHH--------HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc-C----CCceEecCcccCCcc
Q 001973 207 VIMVTNEAQ--------AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFE-G----KDLKLVDAPVSGGVK 273 (988)
Q Consensus 207 ~l~vp~~~~--------~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~-~----~g~~~ldapv~g~~~ 273 (988)
|+|||++.. ++.|....+++.+++++|++||++||+.|++++++.+.+.+. + .++.++++|++..+.
T Consensus 88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G 167 (431)
T 3ojo_A 88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPG 167 (431)
T ss_dssp EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCCCCTT
T ss_pred EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCcCCCc
Confidence 999999872 233433337889999999999999999999999998876542 2 235789999888777
Q ss_pred cccCCCe---EEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 001973 274 RASMGEL---TIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVL 350 (988)
Q Consensus 274 ~a~~g~l---~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~ 350 (988)
.+..+.+ .+++|++++.+++++++|+.++++++++ +++++|+.+|+++|++.++++++++|+..+|++.|+|++++
T Consensus 168 ~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~-~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v 246 (431)
T 3ojo_A 168 KILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIE-TDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDV 246 (431)
T ss_dssp SHHHHHHHSCEEEEESSHHHHHHHHHHHTTTCCSCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred chhhcccCCCEEEEeCCHHHHHHHHHHHHHHhCCcEEe-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 6655443 6888999999999999999999877764 78999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHH
Q 001973 351 FNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVV 430 (988)
Q Consensus 351 ~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~ 430 (988)
.++++...... .+.|+ +||.-.|+.||..++...+++.| ++++++.++++..... ++
T Consensus 247 ~~~~~~~~ri~----~l~pG-------~G~GG~C~pkD~~~L~~~a~~~~---~li~~~~~iN~~~~~~---------v~ 303 (431)
T 3ojo_A 247 IEMANKHPRVN----IHQPG-------PGVGGHCLAVDPYFIIAKDPENA---KLIQTGREINNSMPAY---------VV 303 (431)
T ss_dssp HHHHTTSTTCC----CCCCC-------SCCCCCCBCSCC---------CC---HHHHHHHHHHHTHHHH---------HH
T ss_pred HHHHccCCCcc----cCCCC-------CCccccchhhhHHHHHHHHHHHh---HHHHHHHHHHHHhHHH---------HH
Confidence 99987654321 11222 23444566699999999999988 9999999999887765 66
Q ss_pred HHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 431 KVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 431 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+.+.+..+ .+.| ++...||..||++++|
T Consensus 304 ~~~~~~l~-~~~~--------~~v~vlGlafK~~tdD 331 (431)
T 3ojo_A 304 DTTKQIIK-ALSG--------NKVTVFGLTYKGDVDD 331 (431)
T ss_dssp HHHHHHHH-HSSC--------CEEEEECCCSSTTSCC
T ss_pred HHHHHHhh-hcCC--------CEEEEEeeeeCCCCcc
Confidence 66555442 3555 5678888889988888
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=297.19 Aligned_cols=291 Identities=13% Similarity=0.087 Sum_probs=231.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhHHHHHHh-------------------cCCcccCCHHHHhccC
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRPTLTKFQN-------------------VGGLIANSPAEAAKDV 203 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~-------------------~G~~~~~s~~e~~~~a 203 (988)
++|||+|||+|+||.++|.+|+++ ||+|++|||++++++.+++ .++.+++++.+++++|
T Consensus 4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~a 83 (467)
T 2q3e_A 4 EIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEA 83 (467)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcC
Confidence 357999999999999999999999 8999999999999988643 2456678888999999
Q ss_pred cEEEEEcCChHH--------------HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCccc
Q 001973 204 GVLVIMVTNEAQ--------------AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVS 269 (988)
Q Consensus 204 DvV~l~vp~~~~--------------~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~ 269 (988)
|+||+|||++.. ++.+. +++.+.++++++||++||+.|++++++.+.+.+. +..+++++++
T Consensus 84 DvViiaVptp~~~~~v~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~--~~~~~d~~V~ 158 (467)
T 2q3e_A 84 DLVFISVNTPTKTYGMGKGRAADLKYIEACA---RRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDAN--TKPNLNLQVL 158 (467)
T ss_dssp SEEEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHT--CCTTCEEEEE
T ss_pred CEEEEEcCCchhhccccccCCCcHHHHHHHH---HHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHh--CCCCCCeEEE
Confidence 999999998764 34444 5677888999999999999999999999888773 3445778888
Q ss_pred CCcccccCCCeE--------EEEeC-----CHHHHHHHHHHHHhc-CCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHH
Q 001973 270 GGVKRASMGELT--------IMAAG-----TEESLKSTGSVLSAL-SEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAE 335 (988)
Q Consensus 270 g~~~~a~~g~l~--------~~~gg-----~~~~~~~~~~ll~~~-g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E 335 (988)
++|..+..|... +++|+ +++.++.++++++.+ +..+++ .++++.+++.|+++|.+.++++++++|
T Consensus 159 ~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~-~~~~~~ae~~Kl~~N~~~a~~ia~~nE 237 (467)
T 2q3e_A 159 SNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKIL-TTNTWSSELSKLAANAFLAQRISSINS 237 (467)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEE-EECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEE-ecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999875 77887 778899999999998 655555 478999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCC--chHHHHHHHHH
Q 001973 336 AMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVP--LHISTIAHQLF 413 (988)
Q Consensus 336 a~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~--~pi~~a~~~~~ 413 (988)
+..+|++.|+|++++.++++.+...++. ++.. .++|...++.||+.++.+.++++|++ .++.+++.++.
T Consensus 238 ~~~l~~~~Gid~~~v~~~~~~~~~~~~~-------~~~p--g~g~gg~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~n 308 (467)
T 2q3e_A 238 ISALCEATGADVEEVATAIGMDQRIGNK-------FLKA--SVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMN 308 (467)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSTTTCSS-------SCCC--CSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCCCCcc-------ccCC--CCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 9999999999999999999876531111 1111 12356678899999999999999987 56666666665
Q ss_pred HHHHHcCCCCCChHHHHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 414 LAGSAAGWGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 414 ~~a~~~g~g~~d~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+..... +++.+.+.....+.| ++...||..||++++|
T Consensus 309 ~~~~~~---------~~~~~~~~~~~~~~~--------~~v~vlGlafK~~~dD 345 (467)
T 2q3e_A 309 DYQRRR---------FASRIIDSLFNTVTD--------KKIAILGFAFKKDTGD 345 (467)
T ss_dssp HHHHHH---------HHHHHHHHTTTCCTT--------CEEEEECCSSSTTCCC
T ss_pred HHhHHH---------HHHHHHHHhhcccCC--------CEEEEEeeccCCCCcc
Confidence 444333 444444422224555 5677888888888888
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=295.63 Aligned_cols=290 Identities=12% Similarity=0.058 Sum_probs=232.6
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhHHHHHHhc-------------------CCcccCCHHHHhccC
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRPTLTKFQNV-------------------GGLIANSPAEAAKDV 203 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------G~~~~~s~~e~~~~a 203 (988)
++|||+|||+|+||.++|.+|+++ ||+|++||+++++++.+++. ++.+++++.+++++|
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~a 87 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEA 87 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcC
Confidence 357999999999999999999998 79999999999999988752 234567888889999
Q ss_pred cEEEEEcCChH--------------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh-cCCCceEecCcc
Q 001973 204 GVLVIMVTNEA--------------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF-EGKDLKLVDAPV 268 (988)
Q Consensus 204 DvV~l~vp~~~--------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~-~~~g~~~ldapv 268 (988)
|+||+|||++. .+++++ +++.++++++++||++||+.|++++++.+.+.+ .+ ....++.++
T Consensus 88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~-~~~~~d~~v 163 (481)
T 2o3j_A 88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVS---RTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQK-NNENLKFQV 163 (481)
T ss_dssp SEEEECCCCCBCCSSTTTTTSBCCHHHHHHH---HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC-----CCEEE
T ss_pred CEEEEecCCccccccccccCCCcHHHHHHHH---HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhC-cCcCCceEE
Confidence 99999999874 367776 678889999999999999999999999988876 32 001233344
Q ss_pred cCCcccccCCC-----e---EEEEeCCH-----HHHHHHHHHHHhcCC-eEEEEeCCcchHHHHHHHHHHHHHHHHHHHH
Q 001973 269 SGGVKRASMGE-----L---TIMAAGTE-----ESLKSTGSVLSALSE-KLYVIKGGCGAGSGVKMANQLLAGVHIASAA 334 (988)
Q Consensus 269 ~g~~~~a~~g~-----l---~~~~gg~~-----~~~~~~~~ll~~~g~-~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~ 334 (988)
.++|.+...|. + .+++|++. +.++.++++|+.++. .+++ .++++.+++.|+++|++.++++++++
T Consensus 164 ~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~d~~~ae~~Kl~~N~~~a~~ia~~n 242 (481)
T 2o3j_A 164 LSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRII-TTNTWSSELSKLVANAFLAQRISSIN 242 (481)
T ss_dssp EECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEE-EEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEE-ecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 1 46777754 578899999999986 5665 47899999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCC--chhhHHHHHHHHHHHHHHhCCCC--chHHHHHH
Q 001973 335 EAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPY--SALDIFVKDMGIIARECLSQRVP--LHISTIAH 410 (988)
Q Consensus 335 Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~--~~l~~~~kDl~~~~~~a~~~gi~--~pi~~a~~ 410 (988)
|+..+|++.|+|++++.++++.+.. +....|.|+ |...++.||+.++...|++.|++ +|+++++.
T Consensus 243 E~~~la~~~Gid~~~v~~~~~~~~r-----------i~~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~ 311 (481)
T 2o3j_A 243 SISAVCEATGAEISEVAHAVGYDTR-----------IGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVI 311 (481)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHTSTT-----------TCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHHHccCCC-----------CCCCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHH
Confidence 9999999999999999999986541 111223444 47788999999999999999999 99999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 411 QLFLAGSAAGWGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 411 ~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
++.+..... +++.+.+..+..+.| ++...||..||++++|
T Consensus 312 ~~N~~~~~~---------~~~~~~~~l~~~~~~--------~~v~vlGlafK~~~dd 351 (481)
T 2o3j_A 312 NINNWQRRR---------FADKIIAELFNTVTD--------KKIAIFGFAFKKNTGD 351 (481)
T ss_dssp HHHHHHHHH---------HHHHHHHHTTTCCTT--------CEEEEECCSSSTTCCC
T ss_pred HHHHhhHHH---------HHHHHHHhhccccCC--------CeEEEEeeeeCCCCCc
Confidence 999887765 777666665545556 5677888899988888
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-30 Score=298.13 Aligned_cols=257 Identities=20% Similarity=0.246 Sum_probs=230.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc----CCcccCCHHHHhcc---CcEEEEEcCChHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV----GGLIANSPAEAAKD---VGVLVIMVTNEAQAES 218 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----G~~~~~s~~e~~~~---aDvV~l~vp~~~~~~~ 218 (988)
+++|||||+|.||++||.+|+++||+|++|||++++++++.+. |+..+++++++++. +|+||+|||++..+++
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~ 94 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDA 94 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHH
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHH
Confidence 4689999999999999999999999999999999999999876 78888999999887 9999999999878999
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVL 298 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 298 (988)
++ +++.+.+.++++|||++++.|..+.++.+.+.+ .+++|+++|+++++..+..|. ++++||+++.++.++++|
T Consensus 95 vl---~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~--~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 168 (480)
T 2zyd_A 95 AI---DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSA--EGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPIL 168 (480)
T ss_dssp HH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEEEEEESHHHHHHHCC-EEEEESCHHHHHHHHHHH
T ss_pred HH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH--CCCCeeCCccccCHhHHhcCC-eEEecCCHHHHHHHHHHH
Confidence 98 678888999999999999999999989888877 578999999999999988888 899999999999999999
Q ss_pred HhcCCe-------EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---HhcCCCccccccc
Q 001973 299 SALSEK-------LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLFNII---TDSGGSSWMFENR 367 (988)
Q Consensus 299 ~~~g~~-------v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~~~l---~~~~~~s~~~~~~ 367 (988)
+.++.+ +.+ +|+.|.+.++|+++|.+.+.++.+++|++.++++ .|++++++.+++ +.+...|+.+...
T Consensus 169 ~~~g~~~~dGe~~v~~-~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~ 247 (480)
T 2zyd_A 169 TKIAAVAEDGEPCVTY-IGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDIT 247 (480)
T ss_dssp HHHSCBCTTSCBSBCC-CBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHH
T ss_pred HHHhccccCCCceEEE-ECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHH
Confidence 999987 566 5889999999999999999999999999999999 699999999888 4566788888877
Q ss_pred cccccCCCCCCCchhhHHH-----HHHH-HHHHHHHhCCCCchHHHHH
Q 001973 368 VPHMLDNDYTPYSALDIFV-----KDMG-IIARECLSQRVPLHISTIA 409 (988)
Q Consensus 368 ~~~~~~~~~~~~~~l~~~~-----kDl~-~~~~~a~~~gi~~pi~~a~ 409 (988)
.+.+.++++.+++.++.+. |+.+ ++.+.+++.|+++|++..+
T Consensus 248 ~~~l~~~d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~a 295 (480)
T 2zyd_A 248 KDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITES 295 (480)
T ss_dssp HHHHHCBCTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHhcCCCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHH
Confidence 7767777886678888765 4444 7889999999999999875
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=284.01 Aligned_cols=282 Identities=15% Similarity=0.110 Sum_probs=233.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-------------------C-CcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-------------------G-GLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------------------G-~~~~~s~~e~~~~aDvV 206 (988)
|||+|||+|+||.++|.+|+++||+|++||+++++++.+++. | +..++++.++++++|+|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv 80 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence 589999999999999999999999999999999999998763 3 45678888889999999
Q ss_pred EEEcCChHH---------HHHHHccccchhhhCCC---CCEEEecCCCCHHH-HHHHHHHHHhcCCCceE-ecCcccCCc
Q 001973 207 VIMVTNEAQ---------AESVLYGDLGAVSALSS---GASIILSSTVSPGF-VSQLERRLQFEGKDLKL-VDAPVSGGV 272 (988)
Q Consensus 207 ~l~vp~~~~---------~~~vl~~~~~i~~~l~~---g~ivId~st~~p~~-~~~l~~~l~~~~~g~~~-ldapv~g~~ 272 (988)
|+|||++.. +++++ +.+.+.+++ +++||++||+.|++ .+.+.+.+.+. .+..+ ++.++.++|
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~---~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~-~g~~~~~~~~v~~~P 156 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVC---REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDC-SGKKAGVDFGVGTNP 156 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH---HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHH-HSCCBTTTBEEEECC
T ss_pred EEEcCCCcccCCCcchHHHHHHH---HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHh-cCcccCCcEEEEECc
Confidence 999999875 77777 678888888 99999999999998 77777777652 13344 566777788
Q ss_pred ccccCCCe--------EEEEeCC-HHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001973 273 KRASMGEL--------TIMAAGT-EESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARL 343 (988)
Q Consensus 273 ~~a~~g~l--------~~~~gg~-~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~ 343 (988)
.....|.. .+++|++ ++..+.++++++.++.++++ ++++.+++.|++.|.+.++++++++|+..+|++.
T Consensus 157 e~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~--~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~ 234 (436)
T 1mv8_A 157 EFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR--KTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAV 234 (436)
T ss_dssp CCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE--EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888876 5777775 88899999999999987654 5899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCcccccccccccc--CCCCCC--CchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc
Q 001973 344 GLNTRVLFNIITDSGGSSWMFENRVPHML--DNDYTP--YSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419 (988)
Q Consensus 344 Gid~~~~~~~l~~~~~~s~~~~~~~~~~~--~~~~~~--~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~ 419 (988)
|+|++++.+.++... ++. .+.+.+ +|...++.||+.++.+.++++|+++|++++++++++...+.
T Consensus 235 Gid~~~v~~~~~~~~-----------r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~pl~~~v~~in~~~~~~ 303 (436)
T 1mv8_A 235 GVDGREVMDVICQDH-----------KLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQK 303 (436)
T ss_dssp TSCHHHHHHHHTTCT-----------TTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCC-----------CCCCcccCCCCcccccCcCcHhhHHHHHHHHHHcCCCcHHHHHHHHHHhHhHHH
Confidence 999999999887422 111 223333 56777899999999999999999999999999998877665
Q ss_pred CCCCCChHHHHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 420 GWGRQDDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 420 g~g~~d~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+++.+.+. .| ++...||..||++++|
T Consensus 304 ---------~~~~~~~~-----~~--------~~v~vlGlafK~~~~d 329 (436)
T 1mv8_A 304 ---------AFDLITSH-----DT--------RKVGLLGLSFKAGTDD 329 (436)
T ss_dssp ---------HHHHHTTS-----SC--------CEEEEECCSSSTTCCC
T ss_pred ---------HHHHHHHh-----cC--------CEEEEEccccCCCCCc
Confidence 55555433 33 5567788888888888
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=276.01 Aligned_cols=288 Identities=20% Similarity=0.174 Sum_probs=224.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc--------------------CCcccCCHHHHhccCcE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV--------------------GGLIANSPAEAAKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~--------------------G~~~~~s~~e~~~~aDv 205 (988)
|.+|+|||+|+||.++|..|++.||+|+++|+++++++.+++. ...+++++.++++.+|+
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~ 100 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDA 100 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSE
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCc
Confidence 4699999999999999999999999999999999999988752 13467889999999999
Q ss_pred EEEEcCChH---------HHHHHHccccchhhhCC---CCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcc
Q 001973 206 LVIMVTNEA---------QAESVLYGDLGAVSALS---SGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVK 273 (988)
Q Consensus 206 V~l~vp~~~---------~~~~vl~~~~~i~~~l~---~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~ 273 (988)
+|+|||+|. .++.+. +.+.++++ ++++||..||+.|++++++...+.++..+ -.+..+..+|+
T Consensus 101 ~~I~VpTP~~~d~~~Dl~~v~~a~---~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~--~~~f~v~~~PE 175 (444)
T 3vtf_A 101 TFIAVGTPPAPDGSADLRYVEAAA---RAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAG--GVKFSVASNPE 175 (444)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHH---HHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTT--TCCCEEEECCC
T ss_pred eEEEecCCCCCCCCCCcHHHHHHH---HHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCC--CCCceeecCcc
Confidence 999999873 344544 56666664 68999999999999999876554332111 12233344445
Q ss_pred cccCCCe--------EEEEe-CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 001973 274 RASMGEL--------TIMAA-GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLG 344 (988)
Q Consensus 274 ~a~~g~l--------~~~~g-g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~G 344 (988)
+..+|.. .+++| .++++.+.+..+++.+...++++ ++..|++.|++.|.+.++++++++|+..+|++.|
T Consensus 176 rl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~~~--~~~~AE~~Kl~eN~~ravnIa~~NEla~ice~~G 253 (444)
T 3vtf_A 176 FLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKLVM--KPREAELVKYASNVFLALKISFANEVGLLAKRLG 253 (444)
T ss_dssp CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEEEE--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEEEe--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5555542 14444 56778888999999988877664 8899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCC
Q 001973 345 LNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQ 424 (988)
Q Consensus 345 id~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~ 424 (988)
+|..++.+.++.....++.+-+ | .+|+.-.|+.||..++...+++.|+++++++++.++++.....
T Consensus 254 iDv~eV~~a~~~d~rig~~~l~--P-------G~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN~~~~~~----- 319 (444)
T 3vtf_A 254 VDTYRVFEAVGLDKRIGRHYFG--A-------GLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEYMPRY----- 319 (444)
T ss_dssp CCHHHHHHHHHTSTTSCSTTCC--C-------SSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-----
T ss_pred CCHHHHHHHhccCCCCCCCCCC--C-------CCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHH-----
Confidence 9999999998754433222111 1 2345567888999999999999999999999999999887665
Q ss_pred ChHHHHHHHHHhhCccccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 425 DDAAVVKVYETLSGVKVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 425 d~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+++.+.+..+ .+.| ++...||..||++++|
T Consensus 320 ----vv~~l~~~~~-~l~g--------~~V~vlGlafK~~tdD 349 (444)
T 3vtf_A 320 ----AVQLLEERLG-GLRG--------RHVGVLGLAFKPNTDD 349 (444)
T ss_dssp ----HHHHHHHHHT-CCTT--------CEEEEECCSSSSSCCC
T ss_pred ----HHHHHHHHcc-ccCC--------CEEEEEeeecCCCCCc
Confidence 7777776654 4556 5677888888888888
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=276.09 Aligned_cols=281 Identities=15% Similarity=0.159 Sum_probs=227.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCC------------------cccCCHHHHhccCcEEEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGG------------------LIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~------------------~~~~s~~e~~~~aDvV~l 208 (988)
|||+|||+|+||.++|.+|++ ||+|++|||++++++.+++.+. ..++++.++++++|+||+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 589999999999999999999 9999999999999999987765 345678888999999999
Q ss_pred EcCChH----------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCC
Q 001973 209 MVTNEA----------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMG 278 (988)
Q Consensus 209 ~vp~~~----------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g 278 (988)
|||++. .+++++ +.+.+ +.++++||++||+.|++++++.+.+.+ . .++.+|.+..+..+..+
T Consensus 80 avpt~~~~~~~~~dl~~v~~v~---~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~---~-~v~~~Pe~~~~G~a~~~ 151 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQHVETVI---KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQT---D-RIIFSPEFLRESKALYD 151 (402)
T ss_dssp CCCCCEETTTTEECCHHHHHHH---HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTC---S-CEEECCCCCCTTSTTHH
T ss_pred ecCCCcccCCCCccHHHHHHHH---HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCC---C-eEEECCccccCcchhhc
Confidence 999984 578887 57777 889999999999999999999887654 1 66778877666554322
Q ss_pred Ce---EEEEeCCH-------HHHHHHHHHHHh-cCC-e-EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 001973 279 EL---TIMAAGTE-------ESLKSTGSVLSA-LSE-K-LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGL 345 (988)
Q Consensus 279 ~l---~~~~gg~~-------~~~~~~~~ll~~-~g~-~-v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gi 345 (988)
.+ .+++|++. +..+.+.++|.. ... + +++ .++++.+++.|+++|++.++++++++|+..+|++.|+
T Consensus 152 ~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gi 230 (402)
T 1dlj_A 152 NLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVL-IMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKL 230 (402)
T ss_dssp HHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEE-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEE-ecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22 27778876 667778888865 332 2 344 4789999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCccccccccccccCCCCCC--CchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC
Q 001973 346 NTRVLFNIITDSGGSSWMFENRVPHMLDNDYTP--YSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGR 423 (988)
Q Consensus 346 d~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~--~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~ 423 (988)
|++++.++++.+... .+ ..+.| +|...++.||+.++...++ |+++|+++++.++++.....
T Consensus 231 d~~~v~~~~~~~~ri-------~~----~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~~~l~~~~~~~N~~~~~~---- 293 (402)
T 1dlj_A 231 NSHMIIQGISYDDRI-------GM----HYNNPSFGYGGYSLPKDTKQLLANYN--NIPQTLIEAIVSSNNVRKSY---- 293 (402)
T ss_dssp CHHHHHHHHHTSTTT-------CS----SSCCCCSSCCSSHHHHHHHHHHHHHT--TSSCSHHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHhccCCCC-------Cc----CCCCCCCccCCccHHhhHHHHHHHhc--CCChHHHHHHHHHHHHhHHH----
Confidence 999999999865521 11 11234 5778899999999998884 89999999999999988776
Q ss_pred CChHHHHHHHHHhhCc-cccCCCCcchhhhhhccCCCCCCCCchh
Q 001973 424 QDDAAVVKVYETLSGV-KVEGRLPVLKKEAVLQSLPSEWPLDPID 467 (988)
Q Consensus 424 ~d~~a~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (988)
+++.+.+..+- .+.| ++...||..||++++|
T Consensus 294 -----~~~~~~~~~~~~~~~~--------~~v~vlGlafK~~~~d 325 (402)
T 1dlj_A 294 -----IAKQIINVLKEQESPV--------KVVGVYRLIMKSNSDN 325 (402)
T ss_dssp -----HHHHHHHHHTTSCCSS--------CEEEEECCCSSTTCSC
T ss_pred -----HHHHHHHHhhhcCCCC--------CEEEEEeeeccCCCcc
Confidence 77777666543 4555 5677888888888888
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=285.57 Aligned_cols=264 Identities=20% Similarity=0.219 Sum_probs=233.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----cCCcccCCHHHHhc---cCcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----VGGLIANSPAEAAK---DVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----~G~~~~~s~~e~~~---~aDvV~l~vp~~~~~~~ 218 (988)
|||+|||+|.||+.||.+|+++||+|++|||++++++.+.+ .|+..+++++++++ ++|+||+|||++..++.
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~ 82 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence 58999999999999999999999999999999999999987 67888889999875 89999999999878999
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVL 298 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 298 (988)
++ +++.+.+.++++||+++++.+..+.++.+.+.+ .+++|+++|+++++..+..|. .+++||+++.++.++++|
T Consensus 83 vl---~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~--~g~~~v~~pv~g~~~~a~~g~-~i~~gg~~e~~~~v~~ll 156 (482)
T 2pgd_A 83 FI---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKD--KGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIF 156 (482)
T ss_dssp HH---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHH
T ss_pred HH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEeCCCCCCChhhhccCC-eEEeCCCHHHHHHHHHHH
Confidence 98 578888999999999999999988888888876 578999999999999888888 779999999999999999
Q ss_pred HhcCCeE-------EEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHH---hcCCCccccccc
Q 001973 299 SALSEKL-------YVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARL-GLNTRVLFNIIT---DSGGSSWMFENR 367 (988)
Q Consensus 299 ~~~g~~v-------~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~-Gid~~~~~~~l~---~~~~~s~~~~~~ 367 (988)
+.++.++ .+ +|+.|.++++|+++|.+.++++.+++|++.++++. |++++++.+++. .+...|+.++..
T Consensus 157 ~~~g~~v~d~~~~~~~-~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~ 235 (482)
T 2pgd_A 157 QGIAAKVGTGEPCCDW-VGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEIT 235 (482)
T ss_dssp HHHSCBCTTSCBSCCC-CEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHH
T ss_pred HHhhhhccCCCcceEE-ECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHH
Confidence 9999876 45 57899999999999999999999999999999999 999999999985 455778887777
Q ss_pred cccccCCCCCCCchhhHH------HHHHHHHHHHHHhCCCCchHHH-HHHHHHHHHH
Q 001973 368 VPHMLDNDYTPYSALDIF------VKDMGIIARECLSQRVPLHIST-IAHQLFLAGS 417 (988)
Q Consensus 368 ~~~~~~~~~~~~~~l~~~------~kDl~~~~~~a~~~gi~~pi~~-a~~~~~~~a~ 417 (988)
.+.+..+++.+++.++.+ .++.+++.+.|+++|+|+|++. ++++.+....
T Consensus 236 ~~~l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~~ 292 (482)
T 2pgd_A 236 ASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSL 292 (482)
T ss_dssp HHHHHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHC
T ss_pred hHHhhccCCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhhh
Confidence 666777788777877766 3667789999999999999995 6777665543
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=265.49 Aligned_cols=255 Identities=19% Similarity=0.201 Sum_probs=215.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeC--ChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDV--YRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr--~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
|||+|||+|+||..||.+|+++||+|++||| +++..+.+.+.|+. +++.++++++|+||+|||++...+.+.
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~~---- 74 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAAR---- 74 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHHH----
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHHH----
Confidence 5899999999999999999999999999999 78888888888877 788888999999999999987676652
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCe
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEK 304 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~ 304 (988)
++.+.+++ +||++|++.|.+.+.+.+.+.+ .+ |+++|+++++..+..|.. ++++|+.+ +.+++ |+.+|++
T Consensus 75 ~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~--~g--~~~~~v~~~~~~~~~g~~-~~~~g~~~--~~~~~-l~~~g~~ 144 (264)
T 1i36_A 75 RAGRHVRG--IYVDINNISPETVRMASSLIEK--GG--FVDAAIMGSVRRKGADIR-IIASGRDA--EEFMK-LNRYGLN 144 (264)
T ss_dssp HHHTTCCS--EEEECSCCCHHHHHHHHHHCSS--SE--EEEEEECSCHHHHGGGCE-EEEESTTH--HHHHG-GGGGTCE
T ss_pred HHHHhcCc--EEEEccCCCHHHHHHHHHHHhh--CC--eeeeeeeCCccccccCCe-EEecCCcH--HHhhh-HHHcCCe
Confidence 56666655 9999999999999899888765 34 889999999988888887 88888776 88899 9999999
Q ss_pred EEEEeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhh
Q 001973 305 LYVIKGG-CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALD 383 (988)
Q Consensus 305 v~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~ 383 (988)
++++ ++ +|.+.++|+++|++.+.++.+++|++.++++.|++++ +.+.+..+.+.++.. ..+.+..+++.++++
T Consensus 145 ~~~~-~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~-- 218 (264)
T 1i36_A 145 IEVR-GREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFRE--SAISRLKSSCIHARR-- 218 (264)
T ss_dssp EEEC-SSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTHH--HHHHHHHHHHHTHHH--
T ss_pred eEEC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCccHHH--HHHHHhcCCCCcchh--
Confidence 8885 55 8999999999999999999999999999999999987 778888765555542 344566677777776
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCC
Q 001973 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQD 425 (988)
Q Consensus 384 ~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d 425 (988)
+.||++.+.++++++ +++|+.++++++++++.+.|++.+|
T Consensus 219 -~~~~~~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~~~~~~~ 258 (264)
T 1i36_A 219 -RYEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSADA 258 (264)
T ss_dssp -HHHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC------G
T ss_pred -hHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHcCCChhh
Confidence 689999999999999 9999999999999999988776554
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-28 Score=282.91 Aligned_cols=257 Identities=20% Similarity=0.267 Sum_probs=226.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc----CCcccCCHHHHhcc---CcEEEEEcCChHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV----GGLIANSPAEAAKD---VGVLVIMVTNEAQAES 218 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----G~~~~~s~~e~~~~---aDvV~l~vp~~~~~~~ 218 (988)
+++|||||+|.||..||.+|+++||+|++|||++++++.+.+. |+..+++++++++. +|+||+|||++..++.
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~ 84 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDA 84 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHH
Confidence 3689999999999999999999999999999999999998875 77788899998876 9999999999888899
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVL 298 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 298 (988)
++ +++.+.+.+|++||+++++.+..+.++.+.+.+ .+++|+++|+++++..+..|. .+++||+++.++.++++|
T Consensus 85 vl---~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~--~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 158 (474)
T 2iz1_A 85 TI---KSLLPLLDIGDILIDGGNTHFPDTMRRNAELAD--SGINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIF 158 (474)
T ss_dssp HH---HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTT--SSCEEEEEEECSHHHHHHHCC-CEEEEECHHHHHHHHHHH
T ss_pred HH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--CCCeEECCCCCCChhhhccCC-eEEecCCHHHHHHHHHHH
Confidence 88 578888999999999999999988888887765 578999999999999888888 678899999999999999
Q ss_pred HhcCCe--------EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---hcCCCcccccc
Q 001973 299 SALSEK--------LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLFNIIT---DSGGSSWMFEN 366 (988)
Q Consensus 299 ~~~g~~--------v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~~~l~---~~~~~s~~~~~ 366 (988)
+.++.+ +.+ .|+.|.+.++|+++|.+.++++.+++|++.++++ .|++++++.+++. .+...|+..+.
T Consensus 159 ~~~g~~~~~dge~~~~~-~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~ 237 (474)
T 2iz1_A 159 EQIAAKAPQDGKPCVAY-MGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEI 237 (474)
T ss_dssp HHHSCBCTTTCCBSBCC-CBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHH
T ss_pred HHHhcccccCCCceEEE-ECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHh
Confidence 999987 455 5889999999999999999999999999999999 7999999998885 35567787777
Q ss_pred ccccccCCCCCCC-chhhHHH-----HHHH-HHHHHHHhCCCCchHHHHH
Q 001973 367 RVPHMLDNDYTPY-SALDIFV-----KDMG-IIARECLSQRVPLHISTIA 409 (988)
Q Consensus 367 ~~~~~~~~~~~~~-~~l~~~~-----kDl~-~~~~~a~~~gi~~pi~~a~ 409 (988)
..+.+..+|+.++ +.++.+. |+.+ +..+.++++|+++|++..+
T Consensus 238 ~~~~l~~~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~a 287 (474)
T 2iz1_A 238 TKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES 287 (474)
T ss_dssp HHHHTTCBCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred hhhHhhcCCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHH
Confidence 6666677788776 8888665 6666 7889999999999999875
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=278.22 Aligned_cols=262 Identities=19% Similarity=0.215 Sum_probs=226.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-C-------CcccCCHHHHhcc---CcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-G-------GLIANSPAEAAKD---VGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G-------~~~~~s~~e~~~~---aDvV~l~vp~~~~ 215 (988)
|||||||+|.||+.+|.+|+++||+|++|||++++++.+.+. | +..+++++++++. +|+||+|||++..
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 589999999999999999999999999999999999998875 5 5678899998874 9999999999877
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTG 295 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~ 295 (988)
++.++ +++.+.+.++++||+++++.+..+.++.+.+.+ .+++|+++|+++++..+..|. .+++||+++.++.++
T Consensus 82 v~~vl---~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~--~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~ 155 (478)
T 1pgj_A 82 TDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEA--AGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIR 155 (478)
T ss_dssp HHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHT--TTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHH
T ss_pred HHHHH---HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHH--CCCeEEEeeccCCHHHHhcCC-eEeccCCHHHHHHHH
Confidence 89888 678888999999999999999988888888876 578999999999998888888 788899999999999
Q ss_pred HHHHhcCCe-------EEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH----hcCCCcccc
Q 001973 296 SVLSALSEK-------LYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT----DSGGSSWMF 364 (988)
Q Consensus 296 ~ll~~~g~~-------v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~----~~~~~s~~~ 364 (988)
++|+.++.+ +++ .|+.|.++++|+++|.+.++++.+++|++.++++.|++++++.+++. .+...|+.+
T Consensus 156 ~ll~~~g~~~~dg~~~v~~-~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~ 234 (478)
T 1pgj_A 156 PIVEAAAAKADDGRPCVTM-NGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYML 234 (478)
T ss_dssp HHHHHHSCBCTTSCBSCCC-CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHH
T ss_pred HHHHHhcccccCCCeeEEE-eCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHH
Confidence 999999987 555 58899999999999999999999999999999999999999999887 566778877
Q ss_pred ccccccccCCCCCCCchhhHHH-----HHH-HHHHHHHHhCCCCchHHHH-HHHHHHH
Q 001973 365 ENRVPHMLDNDYTPYSALDIFV-----KDM-GIIARECLSQRVPLHISTI-AHQLFLA 415 (988)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~~~-----kDl-~~~~~~a~~~gi~~pi~~a-~~~~~~~ 415 (988)
+...+.+..+++.+.+.++.+. |+. +++.+.++++|+++|+++. ++..+..
T Consensus 235 ~~~~~~l~~~d~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~av~~r~ls 292 (478)
T 1pgj_A 235 DISIAAARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFT 292 (478)
T ss_dssp HHHHHHHHCBCTTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HhhchhhhcCCCCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Confidence 7666656566773237777766 444 6999999999999999988 4434433
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-25 Score=248.13 Aligned_cols=265 Identities=13% Similarity=0.103 Sum_probs=206.5
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC--------------CcccCCHHHHhccCcEEEEE
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG--------------GLIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G--------------~~~~~s~~e~~~~aDvV~l~ 209 (988)
+++|||+|||+|+||+++|..|+++||+|++|||++++++.+++.| +.+++++.++++++|+||+|
T Consensus 27 ~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVila 106 (356)
T 3k96_A 27 PFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIV 106 (356)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEEC
T ss_pred ccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEEC
Confidence 3457999999999999999999999999999999999999998764 23567899999999999999
Q ss_pred cCChHHHHHHHccccchhhhCCCCCEEEecCC-CCHHHHHHHHHHHHhc--CCCceEecCcccCCcccccCCCeEEEEeC
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSGASIILSST-VSPGFVSQLERRLQFE--GKDLKLVDAPVSGGVKRASMGELTIMAAG 286 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st-~~p~~~~~l~~~l~~~--~~g~~~ldapv~g~~~~a~~g~l~~~~gg 286 (988)
||.. .+++++ +++.+.++++++||++++ ..+++ +.+.+.+.+. ...+.++.+|.+.........+..++.+.
T Consensus 107 Vp~~-~~~~vl---~~i~~~l~~~~ivvs~~kGi~~~t-~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~ 181 (356)
T 3k96_A 107 VPSF-AFHEVI---TRMKPLIDAKTRIAWGTKGLAKGS-RLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASN 181 (356)
T ss_dssp CCHH-HHHHHH---HHHGGGCCTTCEEEECCCSCBTTT-BCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEES
T ss_pred CCHH-HHHHHH---HHHHHhcCCCCEEEEEeCCCCcCc-cCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecC
Confidence 9975 588888 688888999999999876 45544 4444444331 13456788887776666666677778888
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 001973 287 TEESLKSTGSVLSALSEKLYVIKGGC-----------------GAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRV 349 (988)
Q Consensus 287 ~~~~~~~~~~ll~~~g~~v~~~~g~~-----------------g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~ 349 (988)
+.+..+.++++|+..+.++++ .+++ |.+..+|+.+|...+++..+++|+.+++++.|+++++
T Consensus 182 ~~~~~~~v~~lf~~~~~rv~~-~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t 260 (356)
T 3k96_A 182 NSQFSKDLIERLHGQRFRVYK-NDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQET 260 (356)
T ss_dssp CHHHHHHHHHHHCCSSEEEEE-ESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred CHHHHHHHHHHhCCCCeeEEE-eCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHh
Confidence 999999999999999988877 4663 5566678889999999999999999999999999999
Q ss_pred HHHHHHhc----CCCcccccccccc-ccCCCCCCC------chhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 001973 350 LFNIITDS----GGSSWMFENRVPH-MLDNDYTPY------SALDIFVKDMGIIARECLSQRVPLHISTIAHQLFL 414 (988)
Q Consensus 350 ~~~~l~~~----~~~s~~~~~~~~~-~~~~~~~~~------~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~ 414 (988)
+.++...+ +++|..++|+.-+ .+.+.+... ..+....++.+.+.++++++|+++|+++++++++.
T Consensus 261 ~~gl~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~il~ 336 (356)
T 3k96_A 261 LTGLAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRILH 336 (356)
T ss_dssp HTSTTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHHHh
Confidence 98753332 2455556655332 111111110 13346778889999999999999999999999986
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-22 Score=220.06 Aligned_cols=264 Identities=14% Similarity=0.116 Sum_probs=192.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccC------------CHHHHhc---cCcEEEEEcC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIAN------------SPAEAAK---DVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~------------s~~e~~~---~aDvV~l~vp 211 (988)
|||+|||+|.||+.+|..|+++||+|++|||++++.+.+.+.|..... +..++.+ ++|+||+|+|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~ 83 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK 83 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence 699999999999999999999999999999999999999887754321 3444444 8999999999
Q ss_pred ChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CCceEecCcccCC--cccccCCCeEEEE--e
Q 001973 212 NEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG--KDLKLVDAPVSGG--VKRASMGELTIMA--A 285 (988)
Q Consensus 212 ~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~--~g~~~ldapv~g~--~~~a~~g~l~~~~--g 285 (988)
.. .+++++ +.+.+.+.++++||++++..+ ..+.+.+.++... .+..+..++..+. +.....|.+.+.. +
T Consensus 84 ~~-~~~~v~---~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~ 158 (316)
T 2ew2_A 84 AQ-QLDAMF---KAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDP 158 (316)
T ss_dssp HH-HHHHHH---HHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSG
T ss_pred cc-cHHHHH---HHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCC
Confidence 65 578887 578888889999999987543 3344554443310 0233444555442 2234456655543 4
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcC
Q 001973 286 GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLL---------------------AGVHIASAAEAMAFGARLG 344 (988)
Q Consensus 286 g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~---------------------~~~~~~~~~Ea~~la~~~G 344 (988)
++++.++.++++|+.+|.++++ .++++.+.+.|++.|.. ..++..++.|+..++++.|
T Consensus 159 ~~~~~~~~~~~ll~~~g~~~~~-~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~G 237 (316)
T 2ew2_A 159 SGKKFALEVVDVFQKAGLNPSY-SSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEA 237 (316)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEE-CTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCCcEE-chhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHcC
Confidence 5788899999999999998877 68999999999999964 2567788999999999999
Q ss_pred CCH--HHHHHHHHhcCCCccccccccccccCCCC-CCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc
Q 001973 345 LNT--RVLFNIITDSGGSSWMFENRVPHMLDNDY-TPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419 (988)
Q Consensus 345 id~--~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~ 419 (988)
+++ +.+.+.+..........+++ +.+. .|+ ..++..+ +.++++++.++++++|+++|+++.++++++.....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~-~sm~-~d~~~~g~~~E-~~~~~~~~~~~a~~~gv~~P~~~~~~~~~~~~~~~ 312 (316)
T 2ew2_A 238 IYLDQAEVYTHIVQTYDPNGIGLHY-PSMY-QDLIKNHRLTE-IDYINGAVWRKGQKYNVATPFCAMLTQLVHGKEEL 312 (316)
T ss_dssp CCCCHHHHHHHHHHTTCTTTTTTSC-CHHH-HHHTTTCCCCS-GGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhccccCCCCC-cHHH-HHHHHcCCcch-HHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 986 56667665422111001111 1111 223 3344444 67999999999999999999999999999887653
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-22 Score=223.62 Aligned_cols=266 Identities=14% Similarity=0.082 Sum_probs=188.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC-----------CcccCCHHHHhccCcEEEEEcCChH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG-----------GLIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G-----------~~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
.|||+|||+|+||++||.+|+++||+|++|||++++++.+++.| +..++++.+ ++.+|+||+|||+ .
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~ 91 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-Q 91 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-G
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-H
Confidence 36999999999999999999999999999999999999998876 456778888 8899999999996 6
Q ss_pred HHHHHHccccchhhhCCCCCEEEecC-CCCHHHHHHHHHHHHhcCCCceEecCcccCCccccc---CCCeE-EEEeCCHH
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSS-TVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRAS---MGELT-IMAAGTEE 289 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~s-t~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~---~g~l~-~~~gg~~~ 289 (988)
++++++ .++.+ ++++||+++ ++.+.+.+.+++.+.+.. + .++++..+|..+. .|... +..++++
T Consensus 92 ~~~~v~---~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~-~---~~~~~~~~P~~~~~~~~g~~~~~~~g~~~- 160 (335)
T 1z82_A 92 YIREHL---LRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEIL-G---CPYAVLSGPSHAEEVAKKLPTAVTLAGEN- 160 (335)
T ss_dssp GHHHHH---TTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHT-C---CCEEEEESSCCHHHHHTTCCEEEEEEETT-
T ss_pred HHHHHH---HHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHc-C---CceEEEECCccHHHHhCCCceEEEEEehh-
Confidence 688888 34444 789999998 466766666777776532 2 2345555555443 45533 3334433
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCcchH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 001973 290 SLKSTGSVLSALSEKLYVIKGGCGAG-----------------SGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFN 352 (988)
Q Consensus 290 ~~~~~~~ll~~~g~~v~~~~g~~g~a-----------------~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~ 352 (988)
++.++++|+..+.++++ .+++-.. ..+|+.+|.+.+.+..++.|+..++++.|++++++.+
T Consensus 161 -~~~~~~ll~~~g~~~~~-~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~ 238 (335)
T 1z82_A 161 -SKELQKRISTEYFRVYT-CEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMG 238 (335)
T ss_dssp -HHHHHHHHCCSSEEEEE-ESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred -HHHHHHHhCCCCEEEEe-cCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcc
Confidence 78999999999988776 4664322 3344556777778889999999999999999988765
Q ss_pred HHHhc----CCCccccccc--cccccCCCCCC------CchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcC
Q 001973 353 IITDS----GGSSWMFENR--VPHMLDNDYTP------YSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420 (988)
Q Consensus 353 ~l~~~----~~~s~~~~~~--~~~~~~~~~~~------~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g 420 (988)
+...+ +..++..+++ .+.+..+ +.. .++.....||++++.++++++|+++|+.++++++++.
T Consensus 239 l~~~~~~~~t~~s~~~~n~~~~~~~~~g-~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~----- 312 (335)
T 1z82_A 239 LAGIGDLMVTCNSRYSRNRRFGELIARG-FNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVYE----- 312 (335)
T ss_dssp TTTHHHHHHHHHCTTCHHHHHHHHHHHT-CCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHS-----
T ss_pred cccccceeeeccCccCcHHHHHHHHhCC-CCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhC-----
Confidence 32110 0112222221 1111111 110 1223356799999999999999999999999998853
Q ss_pred CCCCChHHHHHHHH
Q 001973 421 WGRQDDAAVVKVYE 434 (988)
Q Consensus 421 ~g~~d~~a~~~~~~ 434 (988)
..+...+++.+.
T Consensus 313 --~~~~~~~~~~l~ 324 (335)
T 1z82_A 313 --GKPPLQSMRDLM 324 (335)
T ss_dssp --CCCHHHHHHHHH
T ss_pred --CCCHHHHHHHHH
Confidence 334445555443
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-22 Score=226.51 Aligned_cols=263 Identities=11% Similarity=0.033 Sum_probs=184.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC--------------CcccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG--------------GLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G--------------~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
|||+|||+|+||.++|.+|+++||+|++|||++++++.+.+.+ +..++++.++++++|+||+|||+
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~ 95 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT 95 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh
Confidence 3999999999999999999999999999999999999888753 34567888989999999999996
Q ss_pred hHHHHHHHcc-ccchhhhCCC-CCEEEecC-CCCHHHHHHHHHHHHhcCCCceEecCcccCCcccc-----cCCCeEEEE
Q 001973 213 EAQAESVLYG-DLGAVSALSS-GASIILSS-TVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRA-----SMGELTIMA 284 (988)
Q Consensus 213 ~~~~~~vl~~-~~~i~~~l~~-g~ivId~s-t~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a-----~~g~l~~~~ 284 (988)
..+++++.. +.++.+.+.+ +++||+++ +..+.+.+.+.+.+.+.. +.+ ..++..+|..+ ......++.
T Consensus 96 -~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~-~~~--~~~v~~gp~~~~~~~~g~~~~~~~~ 171 (366)
T 1evy_A 96 -QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFL-PSP--LLSVLAGPSFAIEVATGVFTCVSIA 171 (366)
T ss_dssp -HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTS-CGG--GEEEEESSCCHHHHHTTCCEEEEEE
T ss_pred -HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHC-CCC--cEEEEeCCChHHHHHhCCceEEEEe
Confidence 668888731 1117777777 89999998 566665555666665421 221 12233344332 223345566
Q ss_pred eCCHHHHHHHHHHHHhc--CCeEEEEeCCcchHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 001973 285 AGTEESLKSTGSVLSAL--SEKLYVIKGGCGAGSGV-----------------KMANQLLAGVHIASAAEAMAFGARLGL 345 (988)
Q Consensus 285 gg~~~~~~~~~~ll~~~--g~~v~~~~g~~g~a~~~-----------------Kl~~N~~~~~~~~~~~Ea~~la~~~Gi 345 (988)
+++++.++.++++|+.. +.++++ .+++-...+. |+.+|.+..++..++.|++.++++.|+
T Consensus 172 ~~~~~~~~~v~~ll~~~g~g~~~~~-~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi 250 (366)
T 1evy_A 172 SADINVARRLQRIMSTGDRSFVCWA-TTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGG 250 (366)
T ss_dssp CSSHHHHHHHHHHHSCTTSSEEEEE-ESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHhcCCCCeEEEEE-cCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHhCC
Confidence 77888999999999999 877776 4665433443 344677778889999999999999999
Q ss_pred CHHHHHHHHHhc----CCCccccccc--cccccCCCCC------CCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 001973 346 NTRVLFNIITDS----GGSSWMFENR--VPHMLDNDYT------PYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLF 413 (988)
Q Consensus 346 d~~~~~~~l~~~----~~~s~~~~~~--~~~~~~~~~~------~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~ 413 (988)
+++++.++...+ +..++.++++ .+.+..+ +. ..++...+.||++++.++++++|+++|+++.+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~ 329 (366)
T 1evy_A 251 DGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKG-LPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIV 329 (366)
T ss_dssp CCTTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHTT-CCHHHHHC---CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCccccccccchhheeeecCCCCchHHHHHHHhCC-CCHHHHHHHcCCeeehHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 987765421111 0122222222 1112111 11 012233567999999999999999999999999998
Q ss_pred HH
Q 001973 414 LA 415 (988)
Q Consensus 414 ~~ 415 (988)
+.
T Consensus 330 ~~ 331 (366)
T 1evy_A 330 YK 331 (366)
T ss_dssp HS
T ss_pred HC
Confidence 75
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-21 Score=210.22 Aligned_cols=190 Identities=17% Similarity=0.176 Sum_probs=152.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-------CCcccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-------GGLIANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
.+||+|||+|.||.+||.+|+ +||+|++||+++++++++.+. +++.++++++ +++||+||.|+|...+++.
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~ 89 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKV 89 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHH
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHH
Confidence 479999999999999999999 999999999999999998877 7777888876 8899999999999999988
Q ss_pred HHccccchhhhCCCCCEEE-ecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC---CHHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASII-LSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG---TEESLKST 294 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivI-d~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg---~~~~~~~~ 294 (988)
++++ .+ ..+ ++++++ |+||.+|....+.... +.+..|.||++ |+.. +.++.++.| +++.++++
T Consensus 90 ~l~~--~l-~~~-~~~IlasntSti~~~~~a~~~~~-~~r~~G~Hf~~-Pv~~-------~~lveiv~g~~t~~~~~~~~ 156 (293)
T 1zej_A 90 EVLR--EV-ERL-TNAPLCSNTSVISVDDIAERLDS-PSRFLGVHWMN-PPHV-------MPLVEIVISRFTDSKTVAFV 156 (293)
T ss_dssp HHHH--HH-HTT-CCSCEEECCSSSCHHHHHTTSSC-GGGEEEEEECS-STTT-------CCEEEEEECTTCCHHHHHHH
T ss_pred HHHH--HH-hcC-CCCEEEEECCCcCHHHHHHHhhc-ccceEeEEecC-cccc-------CCEEEEECCCCCCHHHHHHH
Confidence 8863 34 344 888885 7889888754432211 12235788888 5533 335555554 89999999
Q ss_pred HHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc
Q 001973 295 GSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSW 362 (988)
Q Consensus 295 ~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~ 362 (988)
.++++.+|++++++ ++. |++||++. .+++|++.++++ |++++++.+++..+.+.++
T Consensus 157 ~~l~~~lGk~~v~v-~d~------fi~Nrll~----~~~~EA~~l~~~-Gv~~e~id~~~~~g~g~~~ 212 (293)
T 1zej_A 157 EGFLRELGKEVVVC-KGQ------SLVNRFNA----AVLSEASRMIEE-GVRAEDVDRVWKHHLGLLY 212 (293)
T ss_dssp HHHHHHTTCEEEEE-ESS------CHHHHHHH----HHHHHHHHHHHH-TCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHcCCeEEEe-ccc------ccHHHHHH----HHHHHHHHHHHh-CCCHHHHHHHHHhcCCCCC
Confidence 99999999999885 554 78888776 469999999999 8899999999987766655
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=209.24 Aligned_cols=258 Identities=13% Similarity=0.074 Sum_probs=185.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeC--ChhHHHHHHhcCC-----------cccC--CHHHHhccCcEEEEEcC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDV--YRPTLTKFQNVGG-----------LIAN--SPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr--~~~~~~~l~~~G~-----------~~~~--s~~e~~~~aDvV~l~vp 211 (988)
|||+|||+|.||+.+|..|+++||+|++||| ++++.+.+.+.|. ..++ ++.++++++|+||+|+|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 5899999999999999999999999999999 9999999988764 3455 77788899999999999
Q ss_pred ChHHHHHHHccccchhhhCCCCCEEEecC-CC---CHHHHHHHHHHHHhcCCCceEecCcccCCccccc---CCC--eEE
Q 001973 212 NEAQAESVLYGDLGAVSALSSGASIILSS-TV---SPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRAS---MGE--LTI 282 (988)
Q Consensus 212 ~~~~~~~vl~~~~~i~~~l~~g~ivId~s-t~---~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~---~g~--l~~ 282 (988)
++ .+++++ +.+.+ +.++++||+++ +. .|++.+.+.+.+++. .+..+ ..++..+|..+. .+. ..+
T Consensus 81 ~~-~~~~v~---~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~-~g~~~-~~~~~~~p~~~~~~~~g~~~~~~ 153 (335)
T 1txg_A 81 TD-GVLPVM---SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLK-HDLRE-RTVAITGPAIAREVAKRMPTTVV 153 (335)
T ss_dssp GG-GHHHHH---HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTS-TTCGG-GEEEEESSCCHHHHHTTCCEEEE
T ss_pred hH-HHHHHH---HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHh-cCCCC-cEEEEECCCcHHHHHccCCcEEE
Confidence 87 478887 57777 88899999998 44 455666777777642 12211 223333444332 133 345
Q ss_pred EEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHH-----------------HHHH-----HHHHHHHHHHHHHHHHHHH
Q 001973 283 MAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSG-----------------VKMA-----NQLLAGVHIASAAEAMAFG 340 (988)
Q Consensus 283 ~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~-----------------~Kl~-----~N~~~~~~~~~~~Ea~~la 340 (988)
+.+.+++.++.++++|+..+.++++ .+++....+ +|+. +|.....+..++.|+..++
T Consensus 154 ~~~~~~~~~~~~~~ll~~~g~~~~~-~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la 232 (335)
T 1txg_A 154 FSSPSESSANKMKEIFETEYFGVEV-TTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELI 232 (335)
T ss_dssp EECSCHHHHHHHHHHHCBTTEEEEE-ESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHhCCCcEEEEe-cCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5556788899999999999988776 577755555 4666 7877788899999999999
Q ss_pred HHcCCCHHHHH------HHHHhcCCCccccccccccccCCCCCCCc----------hhhHHHHHHHHHHHHHHhCCCCch
Q 001973 341 ARLGLNTRVLF------NIITDSGGSSWMFENRVPHMLDNDYTPYS----------ALDIFVKDMGIIARECLSQRVPLH 404 (988)
Q Consensus 341 ~~~Gid~~~~~------~~l~~~~~~s~~~~~~~~~~~~~~~~~~~----------~l~~~~kDl~~~~~~a~~~gi~~p 404 (988)
++.|++++++. +.+..... +... .........+.... ...+..||++++.++++++|+++|
T Consensus 233 ~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~~~gv~~P 309 (335)
T 1txg_A 233 EILGGDRETAFGLSGFGDLIATFRG-GRNG--MLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTK 309 (335)
T ss_dssp HHHTSCGGGGGSTTTHHHHHHTTTC-HHHH--HHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHCCCcchhhcccchhheeecccc-CccH--HHHHHHhCCCCHHHHHHHhccCCceecchHHHHHHHHHHHHHcCCCCc
Confidence 99999987764 44433222 1110 00001111111000 123345999999999999999999
Q ss_pred HHHHHHHHHHH
Q 001973 405 ISTIAHQLFLA 415 (988)
Q Consensus 405 i~~a~~~~~~~ 415 (988)
+++.++++++.
T Consensus 310 ~~~~~~~~~~~ 320 (335)
T 1txg_A 310 LLDSIYRVLYE 320 (335)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 99999998864
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=202.84 Aligned_cols=247 Identities=13% Similarity=0.105 Sum_probs=185.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
|||+|||+|.||..+|.+|+++| ++|++|||++++.+.+.+. |+..++++.+++ ++|+||+|+| +..+++++ .
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~---~ 75 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC---K 75 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH---T
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH---H
Confidence 58999999999999999999999 9999999999999999875 888888888888 9999999999 77788888 3
Q ss_pred chhhhCCCCCEEEec-CCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC--CHHHHHHHHHHHHhc
Q 001973 225 GAVSALSSGASIILS-STVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG--TEESLKSTGSVLSAL 301 (988)
Q Consensus 225 ~i~~~l~~g~ivId~-st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~ 301 (988)
.+.+ + +++||++ ++..+ ..+.+.++. +.+++.+ +.+.+.....|...++.++ +++.++.++++|+.+
T Consensus 76 ~l~~--~-~~ivv~~~~g~~~---~~l~~~~~~---~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~ 145 (263)
T 1yqg_A 76 NIRT--N-GALVLSVAAGLSV---GTLSRYLGG---TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSV 145 (263)
T ss_dssp TCCC--T-TCEEEECCTTCCH---HHHHHHTTS---CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred Hhcc--C-CCEEEEecCCCCH---HHHHHHcCC---CCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhC
Confidence 4544 4 8999999 66665 445555432 4577777 6666777777777777777 788999999999999
Q ss_pred CCeEEEEeC-CcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc-cccccc--c-cccCC
Q 001973 302 SEKLYVIKG-GCGAGSGVKM--ANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSW-MFENRV--P-HMLDN 374 (988)
Q Consensus 302 g~~v~~~~g-~~g~a~~~Kl--~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~-~~~~~~--~-~~~~~ 374 (988)
|.++ ++ + +-......-+ ..+.+....+..+.|+ +++.|++++++.+++..+...++ ++.... | .+...
T Consensus 146 g~~~-~~-~~~~~~~~~~al~g~~~~~~~~~~~~l~e~---~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (263)
T 1yqg_A 146 GLTV-WL-DDEEKMHGITGISGSGPAYVFYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKN 220 (263)
T ss_dssp EEEE-EC-SSTTHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCEE-Ee-CChhhccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 9876 54 4 4111111111 0122233344445555 88999999999998877654444 333333 4 34556
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcC
Q 001973 375 DYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420 (988)
Q Consensus 375 ~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g 420 (988)
.+.|++++..+.+++ ++.|++.|+.+++.+.++++.+.|
T Consensus 221 ~~~~~~~~~~~l~~l-------~~~~~~~~~~~a~~~~~~~~~~~~ 259 (263)
T 1yqg_A 221 VTSKGGTTHEAVEAF-------RRHRVAEAISEGVCACVRRSQEME 259 (263)
T ss_dssp TCCTTSHHHHHHHHH-------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHH
Confidence 678889888777776 668999999999999999988754
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=207.29 Aligned_cols=264 Identities=14% Similarity=0.138 Sum_probs=181.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC----CeEEEEeCChh--HHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN----FTVIGYDVYRP--TLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G----~~V~v~dr~~~--~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
++|||+|||+|+||.+||.+|.++| |+|++|||+++ +.+.+.+.|+..++++.++++++|+||+||| +..+++
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~ 99 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPF 99 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHH
Confidence 3469999999999999999999999 89999999986 8888888899988899999999999999999 567888
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCC---HHHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGT---EESLKSTG 295 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~---~~~~~~~~ 295 (988)
++ .++.+.+.++++||+++++.+. ..+.+.+.+...+.+++.+ +...+.....|. .++++|+ ++.++.++
T Consensus 100 vl---~~l~~~l~~~~ivvs~s~gi~~--~~l~~~l~~~~~~~~vv~~-~p~~p~~~~~g~-~v~~~g~~~~~~~~~~v~ 172 (322)
T 2izz_A 100 IL---DEIGADIEDRHIVVSCAAGVTI--SSIEKKLSAFRPAPRVIRC-MTNTPVVVREGA-TVYATGTHAQVEDGRLME 172 (322)
T ss_dssp HH---HHHGGGCCTTCEEEECCTTCCH--HHHHHHHHTTSSCCEEEEE-ECCGGGGGTCEE-EEEEECTTCCHHHHHHHH
T ss_pred HH---HHHHhhcCCCCEEEEeCCCCCH--HHHHHHHhhcCCCCeEEEE-eCCcHHHHcCCe-EEEEeCCCCCHHHHHHHH
Confidence 88 5777888889999999765543 2456666542113344433 223333344444 6666776 78899999
Q ss_pred HHHHhcCCeEEEEeCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccc-cc--ccccc
Q 001973 296 SVLSALSEKLYVIKGGCGAGSGVKMA--NQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWM-FE--NRVPH 370 (988)
Q Consensus 296 ~ll~~~g~~v~~~~g~~g~a~~~Kl~--~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~-~~--~~~~~ 370 (988)
++|+.+|.++++ . +-.......+. .|.+.+.++.++.|+ +++.|++++.+.+++..+...++. .. ...|.
T Consensus 173 ~ll~~~G~~~~~-~-e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~~~~p~ 247 (322)
T 2izz_A 173 QLLSSVGFCTEV-E-EDLIDAVTGLSGSGPAYAFTALDALADG---GVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPG 247 (322)
T ss_dssp HHHHTTEEEEEC-C-GGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHhCCCEEEe-C-HHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 999999987654 2 22222233322 233333334444444 688999999999999887654442 22 12333
Q ss_pred ccCCC-CCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHH
Q 001973 371 MLDND-YTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAA 428 (988)
Q Consensus 371 ~~~~~-~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a 428 (988)
++.+. +.|+++.. ..++..++.|++.++.+++.+.++++.+.|.+....+.
T Consensus 248 ~l~~~v~sp~g~t~-------~~l~~l~~~g~~~~~~~av~~~~~ra~e~~~~~~~~~~ 299 (322)
T 2izz_A 248 QLKDNVSSPGGATI-------HALHVLESGGFRSLLINAVEASCIRTRELQSMADQEQV 299 (322)
T ss_dssp HHHHHHCCTTSHHH-------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHhCCCCCcHHH-------HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 33332 35555533 33456678999999999999999999987765444433
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-21 Score=204.61 Aligned_cols=179 Identities=17% Similarity=0.193 Sum_probs=145.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH--------------HHHHHhc-CCcccCCHHHHhccCcEEEEEc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT--------------LTKFQNV-GGLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~--------------~~~l~~~-G~~~~~s~~e~~~~aDvV~l~v 210 (988)
.+||+|||+|.||++||.+|+++||+|++|||++++ .+++.+. +...++++.+++++||+||+||
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVilav 98 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNAT 98 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEEECS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEEEcc
Confidence 479999999999999999999999999999999997 5555543 5566788999999999999999
Q ss_pred CChHHHHHHHccccch-hhhCCCCCEEEecC-----------CCCHHHHHHHHHHHHhcC------CCceEecCcccCCc
Q 001973 211 TNEAQAESVLYGDLGA-VSALSSGASIILSS-----------TVSPGFVSQLERRLQFEG------KDLKLVDAPVSGGV 272 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i-~~~l~~g~ivId~s-----------t~~p~~~~~l~~~l~~~~------~g~~~ldapv~g~~ 272 (988)
|+.... +++ .++ .+.+ ++++|||+| |+.|.+...+.+.+.+.. +++.++++|+++++
T Consensus 99 p~~~~~-~~~---~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v~~~~ 173 (245)
T 3dtt_A 99 EGASSI-AAL---TAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDP 173 (245)
T ss_dssp CGGGHH-HHH---HHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHHHHCG
T ss_pred CcHHHH-HHH---HHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHHhcCc
Confidence 987754 444 244 4555 899999999 566655555555554421 26788999999999
Q ss_pred ccccCCCeEEEEeC-CHHHHHHHHHHHHhcCCe-EEEEeCCcchHHHHHHHHHHHHHHHH
Q 001973 273 KRASMGELTIMAAG-TEESLKSTGSVLSALSEK-LYVIKGGCGAGSGVKMANQLLAGVHI 330 (988)
Q Consensus 273 ~~a~~g~l~~~~gg-~~~~~~~~~~ll~~~g~~-v~~~~g~~g~a~~~Kl~~N~~~~~~~ 330 (988)
..+..+.+.++++| +++.++.++++|+.+|.+ +++ +|+.|.++.+|+++|++..++.
T Consensus 174 ~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~-~G~~g~a~~~k~~~~~~~~l~~ 232 (245)
T 3dtt_A 174 GRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQDVID-LGDITTARGAEMLLPVWIRLWG 232 (245)
T ss_dssp GGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCCEEE-EESGGGHHHHHTTHHHHHHHHH
T ss_pred cccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCceec-cCcHHHHHHhhhhHHHHHHHHH
Confidence 98888888888766 589999999999999974 566 6899999999999999988753
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=195.63 Aligned_cols=246 Identities=15% Similarity=0.136 Sum_probs=186.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
+|||+|||+|.||..++.+|.+.|++|.+|||++++.+.+.+. |+..++++.++++++|+||+|+| +..+++++.
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~~--- 78 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLK--- 78 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHT---
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHHH---
Confidence 4799999999999999999999999999999999999988865 88888899999999999999999 566777762
Q ss_pred chhhhCCCCCEEEecC-CCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC--CHHHHHHHHHHHHhc
Q 001973 225 GAVSALSSGASIILSS-TVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG--TEESLKSTGSVLSAL 301 (988)
Q Consensus 225 ~i~~~l~~g~ivId~s-t~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~ 301 (988)
. +.+++++|+++ +..+.. +.+.+. .+.+++. ++.+.|.....|...++.++ +++.++.++++|+.+
T Consensus 79 ~----l~~~~~vv~~~~~~~~~~---l~~~~~---~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~ 147 (259)
T 2ahr_A 79 P----LHFKQPIISMAAGISLQR---LATFVG---QDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSF 147 (259)
T ss_dssp T----SCCCSCEEECCTTCCHHH---HHHHHC---TTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTT
T ss_pred H----hccCCEEEEeCCCCCHHH---HHHhcC---CCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhC
Confidence 3 33788999985 566553 444443 2446665 66666777777766666666 788999999999999
Q ss_pred CCeEEEEeCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc-cccccc--cccc-CCC
Q 001973 302 SEKLYVIKGGCGAGSGVKMA--NQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSW-MFENRV--PHML-DND 375 (988)
Q Consensus 302 g~~v~~~~g~~g~a~~~Kl~--~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~-~~~~~~--~~~~-~~~ 375 (988)
| ++++ .++......+++. .|.+...+...+.|+ +++.|+|++++.+++..+...++ ++.... |.++ +..
T Consensus 148 G-~~~~-~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~ 222 (259)
T 2ahr_A 148 G-STFD-ISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAI 222 (259)
T ss_dssp E-EEEE-CCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHH
T ss_pred C-CEEE-ecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence 9 5666 4666677777764 233333344445554 88999999999999998776665 444333 5555 334
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 376 YTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 376 ~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
+.|+|++..+.||++ +.|++..+.+++.+.++++.+
T Consensus 223 ~~p~~~~~~~~~~l~-------~~g~~~~~~~a~~~~~~r~~~ 258 (259)
T 2ahr_A 223 CSPGGTTIAGLMELE-------RLGLTATVSSAIDKTIDKAKS 258 (259)
T ss_dssp CCTTSHHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHH-------HCChHHHHHHHHHHHHHHHhc
Confidence 678999888888884 568888888888888877654
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-20 Score=211.07 Aligned_cols=258 Identities=13% Similarity=0.087 Sum_probs=177.2
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC-----C-CeEEEEeCChhHHHHHHh-cCCcccC-------------CHHHHhccCc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS-----N-FTVIGYDVYRPTLTKFQN-VGGLIAN-------------SPAEAAKDVG 204 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~-----G-~~V~v~dr~~~~~~~l~~-~G~~~~~-------------s~~e~~~~aD 204 (988)
++|||+|||+|.||+.+|.+|+++ | |+|++||| +++.+.+++ .|+.... +..+.+..+|
T Consensus 7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 85 (317)
T 2qyt_A 7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVD 85 (317)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCC
Confidence 346999999999999999999999 9 99999999 888999988 7766543 4445678999
Q ss_pred EEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc--CCCceEecCcccCC--cccccCCCe
Q 001973 205 VLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFE--GKDLKLVDAPVSGG--VKRASMGEL 280 (988)
Q Consensus 205 vV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~--~~g~~~ldapv~g~--~~~a~~g~l 280 (988)
+||+|||+.. +++++ +.+.+.+.++++||+++++ ++..+.+.+.++.. ..++.+.++++.+. ......|.+
T Consensus 86 ~vil~vk~~~-~~~v~---~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~ 160 (317)
T 2qyt_A 86 YILFCTKDYD-MERGV---AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADREL 160 (317)
T ss_dssp EEEECCSSSC-HHHHH---HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEecCccc-HHHHH---HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCce
Confidence 9999999976 67777 5677778788899998765 44445555554331 02344566666532 223334443
Q ss_pred EEEE----eCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH-------------------HHHHHHHHHH
Q 001973 281 TIMA----AGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG-------------------VHIASAAEAM 337 (988)
Q Consensus 281 ~~~~----gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~-------------------~~~~~~~Ea~ 337 (988)
.++. +++.+.+ .+.++|+..+.++++ .++++.+.+.|++.|...+ ++..++.|+.
T Consensus 161 ~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~-~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~ 238 (317)
T 2qyt_A 161 FYFGSGLPEQTDDEV-RLAELLTAAGIRAYN-PTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVA 238 (317)
T ss_dssp EEEECCSSSCCHHHH-HHHHHHHHTTCCEEC-CSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHH
T ss_pred EEEcCCCCCCcCHHH-HHHHHHHHCCCCCEE-chHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3232 1246667 899999999988877 6899999999999998653 4558999999
Q ss_pred HHHHHcCCCHH--HHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001973 338 AFGARLGLNTR--VLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLA 415 (988)
Q Consensus 338 ~la~~~Gid~~--~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~ 415 (988)
.++++.|++++ .+.+.+..... ......+.+. .|+..++..+. ...++++.++++++|+++|+.+.++++++.
T Consensus 239 ~v~~a~G~~~~~~~~~~~~~~~~~---~~~~~~~sm~-~d~~~g~~~E~-~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~ 313 (317)
T 2qyt_A 239 ELFRAKYGQVPDDVVQQLLDKQRK---MPPESTSSMH-SDFLQGGSTEV-ETLTGYVVREAEALRVDLPMYKRMYRELVS 313 (317)
T ss_dssp HHHHHHTSCCCSSHHHHHHHHHHH---C----------------------CTTTHHHHHHHHHTTCCCHHHHHHHHTTCC
T ss_pred HHHHHcCCCCChHHHHHHHHHHhc---cCCCCCChHH-HHHHcCCccCH-HHHhhHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999863 56665544210 0111112222 23333333211 122679999999999999999999988754
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-20 Score=207.23 Aligned_cols=251 Identities=16% Similarity=0.118 Sum_probs=181.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC---C----c-ccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG---G----L-IANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G---~----~-~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
|||+|||+|.||+.+|.+|+++||+|++|||++++.+.+...+ . . ..++ .+.++++|+||+|+|++. +++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~~-~~~ 78 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAWQ-VSD 78 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGGG-HHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHHh-HHH
Confidence 5899999999999999999999999999999987765554333 1 0 1334 467789999999999875 788
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCce----EecCcccCCcccccCCCeEEEE-eCCHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLK----LVDAPVSGGVKRASMGELTIMA-AGTEESLKS 293 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~----~ldapv~g~~~~a~~g~l~~~~-gg~~~~~~~ 293 (988)
++ +++.+.+.++++||++++.. +..+.+.+.+++...+.. +.++| . +.....|.+.+.. +++++.++.
T Consensus 79 v~---~~l~~~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p-~--~~~~~~g~~~i~~~~~~~~~~~~ 151 (291)
T 1ks9_A 79 AV---KSLASTLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGN-V--IIHVANGITHIGPARQQDGDYSY 151 (291)
T ss_dssp HH---HHHHTTSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETT-E--EEEEECCCEEEEESSGGGTTCTH
T ss_pred HH---HHHHhhCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCC-E--EEEecccceEEccCCCCcchHHH
Confidence 87 57888888899999986643 333344433321001222 23344 2 4456677766654 456677889
Q ss_pred HHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCH--HHH---
Q 001973 294 TGSVLSALSEKLYVIKGGCGAGSGVKMANQLLA------------------GVHIASAAEAMAFGARLGLNT--RVL--- 350 (988)
Q Consensus 294 ~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~------------------~~~~~~~~Ea~~la~~~Gid~--~~~--- 350 (988)
++++|+..+.++++ .++++.+.+.|++.|... ..+..++.|+..++++.|++. +.+
T Consensus 152 ~~~ll~~~g~~~~~-~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~ 230 (291)
T 1ks9_A 152 LADILQTVLPDVAW-HNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDY 230 (291)
T ss_dssp HHHHHHTTSSCEEE-CTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHhcCCCCee-cHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999998887 689999999999999887 678899999999999999985 454
Q ss_pred -HHHHHhc-CCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 001973 351 -FNIITDS-GGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGS 417 (988)
Q Consensus 351 -~~~l~~~-~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~ 417 (988)
.+++... ...|.++.... .+ +..+. ..+.+++.++++++|+++|+.+.++++++...
T Consensus 231 ~~~~~~~~~~~~ssm~~d~~----~g-----~~~e~-~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~~e 289 (291)
T 1ks9_A 231 VMQVIDATAENISSMLQDIR----AL-----RHTEI-DYINGFLLRRARAHGIAVPENTRLFEMVKRKE 289 (291)
T ss_dssp HHHHHHHTTTCCCHHHHHHH----TT-----CCCSG-GGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCChHHHHHH----cC-----CccHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 3444332 23344433221 11 11111 15678999999999999999999999988654
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.5e-20 Score=208.08 Aligned_cols=257 Identities=12% Similarity=0.044 Sum_probs=183.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCC-------CeEEEEeCChh-----HHHHHHhc--------------CCcccCCHHHHh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN-------FTVIGYDVYRP-----TLTKFQNV--------------GGLIANSPAEAA 200 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~--------------G~~~~~s~~e~~ 200 (988)
|||+|||+|+||++||.+|+++| |+|++|||+++ +.+.+++. ++..++++.+++
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~ 101 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI 101 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence 58999999999999999999999 99999999998 88888763 234567888989
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhh----hCCCCCEEEecCCC-CH--HHHHHHHHHHHhcCCCceEecCcccCCcc
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVS----ALSSGASIILSSTV-SP--GFVSQLERRLQFEGKDLKLVDAPVSGGVK 273 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~----~l~~g~ivId~st~-~p--~~~~~l~~~l~~~~~g~~~ldapv~g~~~ 273 (988)
+++|+||+|||+ ..+++++ +++.+ .+.++++||+++++ .+ .+.+.+.+.+.+.. + ..+++..+|.
T Consensus 102 ~~aDvVilav~~-~~~~~vl---~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~-~---~~~~v~~gp~ 173 (375)
T 1yj8_A 102 NDADLLIFIVPC-QYLESVL---ASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFL-N---IPCSALSGAN 173 (375)
T ss_dssp TTCSEEEECCCH-HHHHHHH---HHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHS-S---SCEEEEECSC
T ss_pred cCCCEEEEcCCH-HHHHHHH---HHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHc-C---CCEEEEeCCc
Confidence 999999999996 6688888 56777 78889999999854 44 22334444444321 2 1233444444
Q ss_pred ccc-----CCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHH-----------------HHHHHHHHHHHH
Q 001973 274 RAS-----MGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVK-----------------MANQLLAGVHIA 331 (988)
Q Consensus 274 ~a~-----~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~K-----------------l~~N~~~~~~~~ 331 (988)
.+. .....++.+++++.++.++++|+..+.++++ .+++-...+.| +.+|...+++..
T Consensus 174 ~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~-~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~ 252 (375)
T 1yj8_A 174 IAMDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFKINC-VNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRN 252 (375)
T ss_dssp CHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEE-ESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHhCCCeEEEEecCCHHHHHHHHHHhCCCCeEEEE-eCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHH
Confidence 332 3334566677888999999999999988877 56764444443 446778888999
Q ss_pred HHHHHHHHHHHc--CCCHHHHHHH------HHhcCCCccccccccccccC-CC-CC--C------CchhhHHHHHHHHHH
Q 001973 332 SAAEAMAFGARL--GLNTRVLFNI------ITDSGGSSWMFENRVPHMLD-ND-YT--P------YSALDIFVKDMGIIA 393 (988)
Q Consensus 332 ~~~Ea~~la~~~--Gid~~~~~~~------l~~~~~~s~~~~~~~~~~~~-~~-~~--~------~~~l~~~~kDl~~~~ 393 (988)
++.|+.+++++. |++++++.++ +..... +... .....+.. ++ +. . .+...+..++++.+.
T Consensus 253 ~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~-~~~~-~~~~~~~~~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~ 330 (375)
T 1yj8_A 253 GINEMILFGKVFFQKFNENILLESCGFADIITSFLA-GRNA-KCSAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVY 330 (375)
T ss_dssp HHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHSS-SSHH-HHHHHHHHHTTSSCHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcchhhccccccceeEeeeC-CccH-HHHHHHHhcCCCCCHHHHHHhhcCCcEeeHHHHHHHHH
Confidence 999999999999 6998877542 222221 1110 01111111 10 11 0 034456789999999
Q ss_pred HHHHhCCC--CchHHHHHHHHHH
Q 001973 394 RECLSQRV--PLHISTIAHQLFL 414 (988)
Q Consensus 394 ~~a~~~gi--~~pi~~a~~~~~~ 414 (988)
++++++|+ ++|+++.++++++
T Consensus 331 ~~a~~~gv~~~~P~~~~v~~~~~ 353 (375)
T 1yj8_A 331 HMIKEKNMTNEFPLFTVLHKISF 353 (375)
T ss_dssp HHHHHTTCGGGCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHh
Confidence 99999999 9999999999876
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-20 Score=206.58 Aligned_cols=259 Identities=11% Similarity=0.003 Sum_probs=183.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC-------CeEEEEeCChh-----HHHHHHhcC--------------CcccCCHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN-------FTVIGYDVYRP-----TLTKFQNVG--------------GLIANSPAEA 199 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~G--------------~~~~~s~~e~ 199 (988)
+|||+|||+|+||+++|..|+++| |+|++|||+++ +.+.+++.+ +..++++.++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA 87 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence 369999999999999999999999 99999999998 888877532 3345788888
Q ss_pred hccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCC---HHHHHHHHHHHHhcCCCceEecCcccCCccccc
Q 001973 200 AKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVS---PGFVSQLERRLQFEGKDLKLVDAPVSGGVKRAS 276 (988)
Q Consensus 200 ~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~---p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~ 276 (988)
++++|+||+|||+ ..+++++ +++.+.+.++++||+++++. |.+.+.+.+.+.+.. + .+.++..+|..+.
T Consensus 88 ~~~aD~Vilav~~-~~~~~v~---~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~-~---~~~~v~~gp~~a~ 159 (354)
T 1x0v_A 88 AEDADILIFVVPH-QFIGKIC---DQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERL-G---IPMSVLMGANIAS 159 (354)
T ss_dssp HTTCSEEEECCCG-GGHHHHH---HHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHH-T---CCEEEEECSCCHH
T ss_pred HcCCCEEEEeCCH-HHHHHHH---HHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHc-C---CCEEEEECCCcHH
Confidence 9999999999997 4588888 57778888899999998743 333333444443321 2 1233444444332
Q ss_pred ---CC--CeEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHH-----------------HHHHHHHHHHHHH
Q 001973 277 ---MG--ELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMA-----------------NQLLAGVHIASAA 334 (988)
Q Consensus 277 ---~g--~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~-----------------~N~~~~~~~~~~~ 334 (988)
.+ ...++.+++++.++.++++|+..+.++++ .+++....+.|++ +|....++..++.
T Consensus 160 ~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~-~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~ 238 (354)
T 1x0v_A 160 EVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITV-VQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLM 238 (354)
T ss_dssp HHHTTCCEEEEEECSSHHHHHHHHHHHCBTTEEEEE-ESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCceEEEEECCHHHHHHHHHHhCCCCEEEEE-cCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHH
Confidence 23 34455667888999999999999988877 5776555666554 6777788899999
Q ss_pred HHHHHHHHcCC---CHHHHHHH------HHhcCCCccccccccccccCCCCCC--------CchhhHHHHHHHHHHHHHH
Q 001973 335 EAMAFGARLGL---NTRVLFNI------ITDSGGSSWMFENRVPHMLDNDYTP--------YSALDIFVKDMGIIARECL 397 (988)
Q Consensus 335 Ea~~la~~~Gi---d~~~~~~~------l~~~~~~s~~~~~~~~~~~~~~~~~--------~~~l~~~~kDl~~~~~~a~ 397 (988)
|+.+++++.|+ +++++.++ +..... +... ...+.+....+.. .+...+..||++.+.++++
T Consensus 239 E~~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~g~v~~~a~ 316 (354)
T 1x0v_A 239 EMIAFAKLFCSGPVSSATFLESCGVADLITTCYG-GRNR-KVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQ 316 (354)
T ss_dssp HHHHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHH-CHHH-HHHHHHHHHCCCHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcccccccchHHHHHHhhcc-cccH-HHHHHHHhcCCCHHHHHHhhcCCcEeehHHHHHHHHHHHH
Confidence 99999999999 88776432 221111 1111 1112222101110 1334456799999999999
Q ss_pred hCCC--CchHHHHHHHHHHH
Q 001973 398 SQRV--PLHISTIAHQLFLA 415 (988)
Q Consensus 398 ~~gi--~~pi~~a~~~~~~~ 415 (988)
++|+ ++|+++.++++++.
T Consensus 317 ~~gv~~~~P~~~~v~~~~~~ 336 (354)
T 1x0v_A 317 HKGLVDKFPLFMAVYKVCYE 336 (354)
T ss_dssp HHTCGGGSHHHHHHHHHHHS
T ss_pred HhCCCCCCCHHHHHHHHHhC
Confidence 9999 99999999998763
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-19 Score=196.14 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=116.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc--chHHHHHHhHHHHHHHHHh
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL--HFLNAFIQNLGIALDMAKT 78 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~--f~l~l~~KDl~la~~~a~~ 78 (988)
||||++.++++++++|++.|++++|||++.++++++.++++||+++++.+++.+++|.| |+++++.||+++++++|++
T Consensus 175 l~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~~l~~KDl~l~~~~A~~ 254 (297)
T 4gbj_A 175 LAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKDINLTLQTASD 254 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCccccCCCCCCccchhHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999987 8999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhccc
Q 001973 79 LAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120 (988)
Q Consensus 79 ~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~ 120 (988)
.|+|+|+++.++++|+++.++|+|++|++++++.+++.+|..
T Consensus 255 ~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~~aGl~ 296 (297)
T 4gbj_A 255 VNAPMPFADIIRNRFISGLAKGRENLDWGALALGASDDAGLT 296 (297)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHHHTTCC
T ss_pred hCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999998863
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.1e-18 Score=184.39 Aligned_cols=201 Identities=13% Similarity=0.178 Sum_probs=161.1
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
+|||+|||+ |.||..+|..|.++||+|++|||++++.+.+.+.|+... ++.++++++|+||+|+|... +++++ +
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~~-~~~v~---~ 85 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDNI-IEKVA---E 85 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHHH-HHHHH---H
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCchH-HHHHH---H
Confidence 479999999 999999999999999999999999999999888786654 67788899999999999866 78887 5
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe-cCcccCCc------ccccCCC-------eE--EEEeCCH
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV-DAPVSGGV------KRASMGE-------LT--IMAAGTE 288 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l-dapv~g~~------~~a~~g~-------l~--~~~gg~~ 288 (988)
++.+.+.++++||++|+..|... +.+ ...+.+|+ ..|+++++ .....|. .. +..++++
T Consensus 86 ~l~~~l~~~~ivv~~s~~~~~~~--l~~----~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~ 159 (286)
T 3c24_A 86 DIVPRVRPGTIVLILDAAAPYAG--VMP----ERADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPE 159 (286)
T ss_dssp HHGGGSCTTCEEEESCSHHHHHT--CSC----CCTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCT
T ss_pred HHHHhCCCCCEEEECCCCchhHH--HHh----hhCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCH
Confidence 77788889999999888764332 222 12457888 78988877 4355563 12 3356889
Q ss_pred HHHHHHHHHHHhcCC---eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcC
Q 001973 289 ESLKSTGSVLSALSE---KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAF-GARLGLNTRVLFNIITDSG 358 (988)
Q Consensus 289 ~~~~~~~~ll~~~g~---~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l-a~~~Gid~~~~~~~l~~~~ 358 (988)
+.++.++++|+.+|. +++++ ++.+.....|.+.|.....++..+.|++.. +++.|++++++.+++..+.
T Consensus 160 ~~~~~v~~l~~~~G~~~~~~~~v-~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~ 232 (286)
T 3c24_A 160 EHYAIGADICETMWSPVTRTHRV-TTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHL 232 (286)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEC-CHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcceEEEe-ChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999 78874 666666666999988777888888997766 5555999999999887654
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-18 Score=182.95 Aligned_cols=245 Identities=18% Similarity=0.179 Sum_probs=168.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC----CeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN----FTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+|||+|||+|.||+.||.+|+++| ++|++|||++++ .|+..++++.++++++|+||+|+|. ..+++++
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~- 75 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKP-DIAGSVL- 75 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCT-TTHHHHH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCH-HHHHHHH-
Confidence 469999999999999999999999 799999999887 5888888999999999999999995 5688888
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC---CHHHHHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG---TEESLKSTGSVL 298 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll 298 (988)
+++.+.++++.++.++++..+.. +.+.++...+.++++. +.|.....| .++++++ +++.++.++++|
T Consensus 76 --~~l~~~l~~~~vv~~~~gi~~~~---l~~~~~~~~~~v~~~p----~~p~~~~~g-~~~~~~~~~~~~~~~~~~~~ll 145 (262)
T 2rcy_A 76 --NNIKPYLSSKLLISICGGLNIGK---LEEMVGSENKIVWVMP----NTPCLVGEG-SFIYCSNKNVNSTDKKYVNDIF 145 (262)
T ss_dssp --HHSGGGCTTCEEEECCSSCCHHH---HHHHHCTTSEEEEEEC----CGGGGGTCE-EEEEEECTTCCHHHHHHHHHHH
T ss_pred --HHHHHhcCCCEEEEECCCCCHHH---HHHHhCCCCcEEEECC----ChHHHHcCC-eEEEEeCCCCCHHHHHHHHHHH
Confidence 46777775445666777887753 4444432101123331 122233345 5666665 688899999999
Q ss_pred HhcCCeEEEEeCCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccc---cccccccC
Q 001973 299 SALSEKLYVIKGGCGAGSGVKMA--NQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFE---NRVPHMLD 373 (988)
Q Consensus 299 ~~~g~~v~~~~g~~g~a~~~Kl~--~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~---~~~~~~~~ 373 (988)
+.+|. ++++ ++-......++. .|.+....+..+.|+ +++.|++++.+.+++..+...+..+. ...|.++.
T Consensus 146 ~~~G~-~~~~-~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 220 (262)
T 2rcy_A 146 NSCGI-IHEI-KEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLK 220 (262)
T ss_dssp HTSEE-EEEC-CGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HhCCC-EEEe-CHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 99997 6664 544444455543 344444444444443 78999999999988877543333221 33344554
Q ss_pred CCC-CCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcC
Q 001973 374 NDY-TPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAG 420 (988)
Q Consensus 374 ~~~-~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g 420 (988)
+.+ .++++.....+++ ++.|++.++.+++.+.++++.+.+
T Consensus 221 d~~~~~~~t~~~~l~~l-------~~~~~~~~~~~a~~~~~~r~~~~~ 261 (262)
T 2rcy_A 221 DNIVSPGGITAVGLYSL-------EKNSFKYTVMNAVEAACEKSKAMG 261 (262)
T ss_dssp HHHCCTTSHHHHHHHHH-------HHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCChHHHHHHHHH-------HHCChHHHHHHHHHHHHHHHHHhc
Confidence 443 4566654444443 556888999999999999887653
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-18 Score=184.91 Aligned_cols=202 Identities=16% Similarity=0.180 Sum_probs=156.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFT-VIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
+|||+|||+|.||..++..|.+.|++ |.+|||++++.+.+.+. |+...+++.++++++|+||+|+|+.. +++++
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~-~~~v~--- 85 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSA-FAELL--- 85 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHH-HHHHH---
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHH-HHHHH---
Confidence 36999999999999999999999999 99999999999988876 88888899998999999999999875 67777
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEE-eCCHHHHHHHHHHHHhcC
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMA-AGTEESLKSTGSVLSALS 302 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~-gg~~~~~~~~~~ll~~~g 302 (988)
+++.+.++++++||++|++.|... +.+.+.. .+..+..+|+++++.... +...+++ +++++.++.++++|+.+|
T Consensus 86 ~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~--~~~~~~~~~~~g~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~g 160 (266)
T 3d1l_A 86 QGIVEGKREEALMVHTAGSIPMNV--WEGHVPH--YGVFYPMQTFSKQREVDF-KEIPFFIEASSTEDAAFLKAIASTLS 160 (266)
T ss_dssp HHHHTTCCTTCEEEECCTTSCGGG--STTTCSS--EEEEEECCCC---CCCCC-TTCCEEEEESSHHHHHHHHHHHHTTC
T ss_pred HHHHhhcCCCcEEEECCCCCchHH--HHHHHHh--ccCcCCceecCCCchhhc-CCCeEEEecCCHHHHHHHHHHHHhcC
Confidence 567777889999999999877543 3333322 234567788777654333 3334444 889999999999999999
Q ss_pred CeEEEEeCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCc
Q 001973 303 EKLYVIKGGCG---AGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSS 361 (988)
Q Consensus 303 ~~v~~~~g~~g---~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s 361 (988)
.+++++ ++.+ ...+.|+++|... ++..++|+ ++++.|++++.+.+++..+...+
T Consensus 161 ~~~~~~-~~~~~~~~~~~~~l~~~~~~--~~~~~~ea--l~~~~Gl~~~~~~~l~~~~~~~~ 217 (266)
T 3d1l_A 161 NRVYDA-DSEQRKSLHLAAVFTCNFTN--HMYALAAE--LLKKYNLPFDVMLPLIDETARKV 217 (266)
T ss_dssp SCEEEC-CHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHTTCCGGGGHHHHHHHHHHH
T ss_pred CcEEEe-CHHHHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHcCCCHHHHHHHHHHHHHHH
Confidence 888885 5444 5688899999843 34556675 67899999999999888765433
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=188.36 Aligned_cols=118 Identities=26% Similarity=0.394 Sum_probs=112.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhcccc-------ccccCCCCc-chHHHHHHhHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIP-------NLLRGDAKL-HFLNAFIQNLGIA 72 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~-f~l~l~~KDl~la 72 (988)
||||+++++++++++|++.|++++|+|++.++++++.++++||+++.+.| .+.+++|+| |+++++.||++++
T Consensus 174 l~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~~l~~KDl~l~ 253 (300)
T 3obb_A 174 VCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLA 253 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccchHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999998876 467889999 9999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhc
Q 001973 73 LDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLG 118 (988)
Q Consensus 73 ~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g 118 (988)
+++|++.|+|+|+++.++++|+++.++|+|++|+++++++|++..|
T Consensus 254 ~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~~~G 299 (300)
T 3obb_A 254 QEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPTQG 299 (300)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTTC-
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998876
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-17 Score=183.40 Aligned_cols=264 Identities=19% Similarity=0.226 Sum_probs=171.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CC--------------cccCCHHHHhccCcEEEEEc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GG--------------LIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~--------------~~~~s~~e~~~~aDvV~l~v 210 (988)
+|||+|||+|.||..+|..|+++||+|++|||++++.+.+.+. +. ..++++.++++++|+||+|+
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v 83 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 83 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence 4799999999999999999999999999999999999998876 32 24678888889999999999
Q ss_pred CChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC-CCceEec---CcccCCccc---cc----CCC
Q 001973 211 TNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG-KDLKLVD---APVSGGVKR---AS----MGE 279 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~-~g~~~ld---apv~g~~~~---a~----~g~ 279 (988)
|... .++++ +.+.+.+.++++||++.+..+++. ++.+.+.+.+ ..+.|++ .|+.+.... +. .+.
T Consensus 84 ~~~~-~~~~~---~~l~~~l~~~~~vv~~~~~~~~~~-~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~ 158 (359)
T 1bg6_A 84 PAIH-HASIA---ANIASYISEGQLIILNPGATGGAL-EFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGA 158 (359)
T ss_dssp CGGG-HHHHH---HHHGGGCCTTCEEEESSCCSSHHH-HHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSC
T ss_pred CchH-HHHHH---HHHHHhCCCCCEEEEcCCCchHHH-HHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecc
Confidence 9877 46676 577888899999999866455443 3555565532 1234554 565543221 11 122
Q ss_pred eEEEE---eCCHHHHHHHHHHHHhcCCeEEEEeCCc-------------------chHHHHH------HH---HHHHHHH
Q 001973 280 LTIMA---AGTEESLKSTGSVLSALSEKLYVIKGGC-------------------GAGSGVK------MA---NQLLAGV 328 (988)
Q Consensus 280 l~~~~---gg~~~~~~~~~~ll~~~g~~v~~~~g~~-------------------g~a~~~K------l~---~N~~~~~ 328 (988)
+.+-. +++++.++.++++|..+. . ..++ +.+...| +- .+....+
T Consensus 159 ~~~g~~~~~~~~~~~~~l~~~~~~~~----~-~~di~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (359)
T 1bg6_A 159 MDFACLPAAKAGWALEQIGSVLPQYV----A-VENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSL 233 (359)
T ss_dssp EEEEEESGGGHHHHHHHHTTTCTTEE----E-CSCHHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHH
T ss_pred eEEEeccccccHHHHHHHHHHhhhcE----E-cCChHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHH
Confidence 11111 234456677777775531 1 1221 1111111 11 1223566
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcccc--cc-ccccccCCCCCCCchhh--HHHHHH----HHHHHHHHhC
Q 001973 329 HIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMF--EN-RVPHMLDNDYTPYSALD--IFVKDM----GIIARECLSQ 399 (988)
Q Consensus 329 ~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~--~~-~~~~~~~~~~~~~~~l~--~~~kDl----~~~~~~a~~~ 399 (988)
+..++.|+..++++.|++++++.+.+......++.. .. ..+.+..+-..+ ..++ .+.||+ +.+.++++++
T Consensus 234 ~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~d~~~~-~e~~~~~~~~D~~~~~g~~~~~a~~~ 312 (359)
T 1bg6_A 234 AEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGP-INLNTRYFFEDVSTGLVPLSELGRAV 312 (359)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBCC-SSSCCHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHhcchhhcCCCCC-CCCCccceecCcCccHHHHHHHHHHc
Confidence 778899999999999999877777766543322210 00 012232222112 2234 678998 7999999999
Q ss_pred CCCchHHHHHHHHHHHHHHcC
Q 001973 400 RVPLHISTIAHQLFLAGSAAG 420 (988)
Q Consensus 400 gi~~pi~~a~~~~~~~a~~~g 420 (988)
|+++|+.+.++++++.....+
T Consensus 313 gv~~P~~~~l~~~~~~~~~~~ 333 (359)
T 1bg6_A 313 NVPTPLIDAVLDLISSLIDTD 333 (359)
T ss_dssp TCCCHHHHHHHHHHHHHTTCC
T ss_pred CCCchHHHHHHHHHHHHHCCC
Confidence 999999999999998776553
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=193.96 Aligned_cols=191 Identities=17% Similarity=0.207 Sum_probs=148.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------cC-------------CcccCCHHHHh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------VG-------------GLIANSPAEAA 200 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G-------------~~~~~s~~e~~ 200 (988)
+.+||+|||+|.||.+||.+|+++|++|++||+++++++.+.+ .| ++.+++++ .+
T Consensus 4 ~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 82 (483)
T 3mog_A 4 NVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-AL 82 (483)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GG
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hh
Confidence 3569999999999999999999999999999999999887654 23 23466774 68
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEE-ecCCCCHHHHHHHHHHHH--hcCCCceEec-CcccCCccccc
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASII-LSSTVSPGFVSQLERRLQ--FEGKDLKLVD-APVSGGVKRAS 276 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivI-d~st~~p~~~~~l~~~l~--~~~~g~~~ld-apv~g~~~~a~ 276 (988)
++||+||+|||...+++..++ .++.+.++++++++ ++||.++.. +++.+. +...|.||++ +|++
T Consensus 83 ~~aDlVIeAVpe~~~vk~~v~--~~l~~~~~~~~IlasntSti~i~~---ia~~~~~p~~~ig~hf~~Pa~v~------- 150 (483)
T 3mog_A 83 AAADLVIEAASERLEVKKALF--AQLAEVCPPQTLLTTNTSSISITA---IAAEIKNPERVAGLHFFNPAPVM------- 150 (483)
T ss_dssp GGCSEEEECCCCCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHHH---HTTTSSSGGGEEEEEECSSTTTC-------
T ss_pred cCCCEEEEcCCCcHHHHHHHH--HHHHHhhccCcEEEecCCCCCHHH---HHHHccCccceEEeeecChhhhC-------
Confidence 899999999999876654333 56788899999985 678887753 333322 1223567766 3432
Q ss_pred CCCeEEEEeC---CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 001973 277 MGELTIMAAG---TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNI 353 (988)
Q Consensus 277 ~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~ 353 (988)
.++.+++| +++.++.+.++++.+|+.++++.+..| +++||++.. +++|++.++++.++|++++.++
T Consensus 151 --~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~G-----fi~Nr~l~~----~~~Ea~~l~~~g~~~~~~id~a 219 (483)
T 3mog_A 151 --KLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPG-----FIVNRVARP----YYSEAWRALEEQVAAPEVIDAA 219 (483)
T ss_dssp --CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTT-----TTHHHHTHH----HHHHHHHHHHTTCSCHHHHHHH
T ss_pred --CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccCc-----chHHHHHHH----HHHHHHHHHHhCCCCHHHHHHH
Confidence 56778877 789999999999999999888643343 788887776 5999999999999999999999
Q ss_pred HHhcCC
Q 001973 354 ITDSGG 359 (988)
Q Consensus 354 l~~~~~ 359 (988)
+..+.+
T Consensus 220 ~~~~~G 225 (483)
T 3mog_A 220 LRDGAG 225 (483)
T ss_dssp HHHTTC
T ss_pred HHhcCC
Confidence 986544
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=182.64 Aligned_cols=193 Identities=17% Similarity=0.149 Sum_probs=140.6
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hcC------------------CcccC
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ-----------NVG------------------GLIAN 194 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G------------------~~~~~ 194 (988)
+.++||+|||+|.||.+||..|+++||+|++||+++++++.+. +.| ++.++
T Consensus 13 ~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 92 (302)
T 1f0y_A 13 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 92 (302)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEec
Confidence 3457899999999999999999999999999999998877642 223 34567
Q ss_pred CHHHHhccCcEEEEEcCChHHHH-HHHccccchhhhCCCCCEEEec-CCCCHHHHHHHHHHHH--hcCCCceEecCcccC
Q 001973 195 SPAEAAKDVGVLVIMVTNEAQAE-SVLYGDLGAVSALSSGASIILS-STVSPGFVSQLERRLQ--FEGKDLKLVDAPVSG 270 (988)
Q Consensus 195 s~~e~~~~aDvV~l~vp~~~~~~-~vl~~~~~i~~~l~~g~ivId~-st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g 270 (988)
++.+++++||+||+|||...+++ .++ +++.+.++++++|+.. |+..+. ++++.+. ++..+.||.+ |+
T Consensus 93 ~~~~~~~~aD~Vi~avp~~~~~~~~v~---~~l~~~~~~~~iv~s~ts~i~~~---~l~~~~~~~~~~~g~h~~~-P~-- 163 (302)
T 1f0y_A 93 DAASVVHSTDLVVEAIVENLKVKNELF---KRLDKFAAEHTIFASNTSSLQIT---SIANATTRQDRFAGLHFFN-PV-- 163 (302)
T ss_dssp CHHHHTTSCSEEEECCCSCHHHHHHHH---HHHTTTSCTTCEEEECCSSSCHH---HHHTTSSCGGGEEEEEECS-ST--
T ss_pred CHHHhhcCCCEEEEcCcCcHHHHHHHH---HHHHhhCCCCeEEEECCCCCCHH---HHHHhcCCcccEEEEecCC-Cc--
Confidence 88888999999999999876554 444 4677778889988865 455443 3333332 1112445543 22
Q ss_pred CcccccCCCeEEEEeC---CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 001973 271 GVKRASMGELTIMAAG---TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNT 347 (988)
Q Consensus 271 ~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~ 347 (988)
..+.+..+++| +++.++.+.++++.+|+.++++....| ++++|++. .+++|++.++++.|+++
T Consensus 164 -----~~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g-----~i~nr~l~----~~~~Ea~~l~~~g~~~~ 229 (302)
T 1f0y_A 164 -----PVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPG-----FIVNRLLV----PYLMEAIRLYERGDASK 229 (302)
T ss_dssp -----TTCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTT-----TTHHHHHH----HHHHHHHHHHHTTSSCH
T ss_pred -----ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCccc-----ccHHHHHH----HHHHHHHHHHHcCCCCH
Confidence 12344555655 789999999999999998877522223 56676654 45899999999999999
Q ss_pred HHHHHHHHhcCC
Q 001973 348 RVLFNIITDSGG 359 (988)
Q Consensus 348 ~~~~~~l~~~~~ 359 (988)
+++..++..+.+
T Consensus 230 ~~id~~~~~g~g 241 (302)
T 1f0y_A 230 EDIDTAMKLGAG 241 (302)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC
Confidence 999998875443
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-16 Score=174.73 Aligned_cols=173 Identities=21% Similarity=0.254 Sum_probs=141.5
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHHHhcCC--cccCCHHH-HhccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQNVGG--LIANSPAE-AAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~G~--~~~~s~~e-~~~~aDvV~l~vp~~~~~~~v 219 (988)
..|||+|||+|.||..+|..|.++|+ +|++|||++++.+.+.+.|+ ..++++.+ ++++||+||+|||... +.++
T Consensus 32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v 110 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT-FREI 110 (314)
T ss_dssp SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGG-HHHH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHH-HHHH
Confidence 34799999999999999999999999 99999999999999988887 45778888 8999999999999865 6677
Q ss_pred HccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccC----Cccccc----CCCeEEEEe---CC
Q 001973 220 LYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSG----GVKRAS----MGELTIMAA---GT 287 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g----~~~~a~----~g~l~~~~g---g~ 287 (988)
+ +++.+.++++++|+|++++++...+.+.+.++. +|+. .|+.| |+..+. .|..++++. ++
T Consensus 111 l---~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-----~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~ 182 (314)
T 3ggo_A 111 A---KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-----RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD 182 (314)
T ss_dssp H---HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-----GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSC
T ss_pred H---HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-----CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCC
Confidence 7 578888999999999999998888888777643 4555 36665 444444 566777774 57
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH
Q 001973 288 EESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327 (988)
Q Consensus 288 ~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~ 327 (988)
++.++.++++|+.+|.+++++ ++-.....++++..+-..
T Consensus 183 ~~~~~~v~~l~~~~G~~v~~~-~~~~hD~~~a~~s~lph~ 221 (314)
T 3ggo_A 183 KKRLKLVKRVWEDVGGVVEYM-SPELHDYVFGVVSHLPHA 221 (314)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEc-CHHHHHHHHHHHHHHHHH
Confidence 899999999999999998874 666777788777655444
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-16 Score=171.93 Aligned_cols=193 Identities=16% Similarity=0.105 Sum_probs=145.1
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----------C--------------CcccCCHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----------G--------------GLIANSPAEA 199 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------G--------------~~~~~s~~e~ 199 (988)
+++||+|||+|.||..||..|+++|++|++||+++++++.+.+. | +..++++.++
T Consensus 3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 82 (283)
T 4e12_A 3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA 82 (283)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence 35799999999999999999999999999999999988776653 2 4567889999
Q ss_pred hccCcEEEEEcCChHHH-HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCCceEecCcccCCccccc
Q 001973 200 AKDVGVLVIMVTNEAQA-ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF--EGKDLKLVDAPVSGGVKRAS 276 (988)
Q Consensus 200 ~~~aDvV~l~vp~~~~~-~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~--~~~g~~~ldapv~g~~~~a~ 276 (988)
+++||+||+|+|...++ +.++ +++.+.+++++++++.++..+. .++++.+.. ...+.||.+ | +.
T Consensus 83 ~~~aDlVi~av~~~~~~~~~v~---~~l~~~~~~~~il~s~tS~~~~--~~la~~~~~~~~~ig~h~~~-p-------~~ 149 (283)
T 4e12_A 83 VKDADLVIEAVPESLDLKRDIY---TKLGELAPAKTIFATNSSTLLP--SDLVGYTGRGDKFLALHFAN-H-------VW 149 (283)
T ss_dssp TTTCSEEEECCCSCHHHHHHHH---HHHHHHSCTTCEEEECCSSSCH--HHHHHHHSCGGGEEEEEECS-S-------TT
T ss_pred hccCCEEEEeccCcHHHHHHHH---HHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCCcceEEEccCC-C-------cc
Confidence 99999999999987544 4444 5677888999999965544442 244554432 112445443 2 23
Q ss_pred CCCeEEEEeC---CHHHHHHHHHHHHhcCCeEEEEe-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 001973 277 MGELTIMAAG---TEESLKSTGSVLSALSEKLYVIK-GGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFN 352 (988)
Q Consensus 277 ~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~~-g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~ 352 (988)
.+.++.++.+ +++.++.++++++.+|++++++. ..+|. ++|+++. ..++|++.++++.+++++++.+
T Consensus 150 ~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~-----i~nr~~~----~~~~ea~~l~~~g~~~~~~id~ 220 (283)
T 4e12_A 150 VNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGY-----VLNSLLV----PLLDAAAELLVDGIADPETIDK 220 (283)
T ss_dssp TSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTT-----THHHHHH----HHHHHHHHHHHTTSCCHHHHHH
T ss_pred cCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCE-----EehHHHH----HHHHHHHHHHHhCCCCHHHHHH
Confidence 4555666665 68999999999999999988852 23342 4566654 3689999999999999999999
Q ss_pred HHHhcCC
Q 001973 353 IITDSGG 359 (988)
Q Consensus 353 ~l~~~~~ 359 (988)
++..+.+
T Consensus 221 ~~~~~~g 227 (283)
T 4e12_A 221 TWRIGTG 227 (283)
T ss_dssp HHHHHHC
T ss_pred HHHhccC
Confidence 9876544
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-16 Score=168.14 Aligned_cols=203 Identities=17% Similarity=0.204 Sum_probs=142.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC----eEEEEeCChhHHHHHHh-cCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF----TVIGYDVYRPTLTKFQN-VGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~-~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
|||+|||+|+||.+|+.+|.++|| +|++|||++++.+.+.+ .|+..++++.++++++|+||+|+|. ..+++++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~- 80 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII- 80 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence 689999999999999999999998 99999999999999875 4999899999999999999999975 5588887
Q ss_pred cccchhhhCCCCCEEEec-CCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEE--eCCHHHHHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILS-STVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMA--AGTEESLKSTGSVL 298 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~-st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~--gg~~~~~~~~~~ll 298 (988)
+++.+.++++++||.. ++.++. .+.+.+.. +..++.. +...|.....|...++. +++++.++.++++|
T Consensus 81 --~~l~~~l~~~~~vvs~~~gi~~~---~l~~~~~~---~~~~v~~-~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 151 (247)
T 3gt0_A 81 --NEIKEIIKNDAIIVTIAAGKSIE---STENAFNK---KVKVVRV-MPNTPALVGEGMSALCPNEMVTEKDLEDVLNIF 151 (247)
T ss_dssp -----CCSSCTTCEEEECSCCSCHH---HHHHHHCS---CCEEEEE-ECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred --HHHHhhcCCCCEEEEecCCCCHH---HHHHHhCC---CCcEEEE-eCChHHHHcCceEEEEeCCCCCHHHHHHHHHHH
Confidence 5777888889998854 555543 34444432 2333321 11222233334444444 36889999999999
Q ss_pred HhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCCcccc
Q 001973 299 SALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAF-GARLGLNTRVLFNIITDSGGSSWMF 364 (988)
Q Consensus 299 ~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l-a~~~Gid~~~~~~~l~~~~~~s~~~ 364 (988)
+.+|. ++++ ++-.......+.... -.++..+.|++.. +.+.|+|++++.+++.++...++.+
T Consensus 152 ~~~G~-~~~~-~e~~~d~~~a~~g~g--pa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~ 214 (247)
T 3gt0_A 152 NSFGQ-TEIV-SEKLMDVVTSVSGSS--PAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKM 214 (247)
T ss_dssp GGGEE-EEEC-CGGGHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC-EEEe-CHHHccHHHHHhccH--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99998 5554 322222222222111 1234456777766 8999999999999999887555543
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=171.59 Aligned_cols=252 Identities=13% Similarity=0.081 Sum_probs=170.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC---eEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF---TVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+|||+|||+|+||.+|+..|.++|+ +|++|||++++.+.+.+. |+..+++..++++++|+||+|||. ..+++++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl- 80 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC- 80 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence 4799999999999999999999999 999999999999999886 888889999999999999999985 6688888
Q ss_pred cccchhhh-CCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC---CHHHHHHHHHH
Q 001973 222 GDLGAVSA-LSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG---TEESLKSTGSV 297 (988)
Q Consensus 222 ~~~~i~~~-l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~l 297 (988)
+++.+. ++++++||..++..+. ..+.+.+.. +.+++.+ +...|.....|. +.++.+ +++.++.++++
T Consensus 81 --~~l~~~~l~~~~iiiS~~agi~~--~~l~~~l~~---~~~vvr~-mPn~p~~v~~g~-~~l~~~~~~~~~~~~~v~~l 151 (280)
T 3tri_A 81 --EELKDILSETKILVISLAVGVTT--PLIEKWLGK---ASRIVRA-MPNTPSSVRAGA-TGLFANETVDKDQKNLAESI 151 (280)
T ss_dssp --HHHHHHHHTTTCEEEECCTTCCH--HHHHHHHTC---CSSEEEE-ECCGGGGGTCEE-EEEECCTTSCHHHHHHHHHH
T ss_pred --HHHHhhccCCCeEEEEecCCCCH--HHHHHHcCC---CCeEEEE-ecCChHHhcCcc-EEEEeCCCCCHHHHHHHHHH
Confidence 577777 7888888876554442 345555542 2334332 112233333333 444443 57899999999
Q ss_pred HHhcCCeEEEEeCCcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCcc-cccc--cccccc
Q 001973 298 LSALSEKLYVIKGGCGAGSGVKM--ANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSW-MFEN--RVPHML 372 (988)
Q Consensus 298 l~~~g~~v~~~~g~~g~a~~~Kl--~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~-~~~~--~~~~~~ 372 (988)
|+.+|+.+ ++.++-......-+ ..+.+...++.++.|+ +.+.|+++++..+++.++...+. +... ..|..+
T Consensus 152 ~~~iG~~~-~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~~l 227 (280)
T 3tri_A 152 MRAVGLVI-WVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLGLTKETAELLTEQTVLGAARMALETEQSVVQL 227 (280)
T ss_dssp HGGGEEEE-ECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHCCCeE-EECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 99999744 43222111111111 2234444555555555 67999999999998887643322 2211 112212
Q ss_pred -CCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc
Q 001973 373 -DNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419 (988)
Q Consensus 373 -~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~ 419 (988)
+.-.+|+.+. ...++..++.|++..+.+++...++++.+-
T Consensus 228 ~~~v~spgGtT-------~~~l~~le~~g~~~~~~~av~aa~~r~~el 268 (280)
T 3tri_A 228 RQFVTSPGGTT-------EQAIKVLESGNLRELFIKALTAAVNRAKEL 268 (280)
T ss_dssp HHHHCCTTSHH-------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCChHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHH
Confidence 1223454442 234566688899999999999988888764
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=167.18 Aligned_cols=177 Identities=21% Similarity=0.254 Sum_probs=142.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHHHhcCCc--ccCCHHHHhc-cCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQNVGGL--IANSPAEAAK-DVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~G~~--~~~s~~e~~~-~aDvV~l~vp~~~~~~~vl~ 221 (988)
|||+|||+|.||..+|..|.++|+ +|++|||++++.+.+.+.|.. .++++.++++ ++|+||+|+|... +.+++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~- 79 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT-FREIA- 79 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHH-HHHHH-
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHH-HHHHH-
Confidence 689999999999999999999999 999999999999988888874 3668888898 9999999999864 66676
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccC----Cccccc----CCCeEEEE---eCCHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSG----GVKRAS----MGELTIMA---AGTEE 289 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g----~~~~a~----~g~l~~~~---gg~~~ 289 (988)
+++.+.++++.+|++++++.+...+.+.+.++.. ++. .|+.+ +|..+. .+..++++ +++++
T Consensus 80 --~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~-----~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~ 152 (281)
T 2g5c_A 80 --KKLSYILSEDATVTDQGSVKGKLVYDLENILGKR-----FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKK 152 (281)
T ss_dssp --HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG-----EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHH
T ss_pred --HHHHhhCCCCcEEEECCCCcHHHHHHHHHhcccc-----ceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHH
Confidence 4677788899999999999888777787777541 444 35544 344443 56666776 67889
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHH
Q 001973 290 SLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASA 333 (988)
Q Consensus 290 ~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~ 333 (988)
.++.++++|+.+|.++++ .++.....++|++.|....+...++
T Consensus 153 ~~~~v~~l~~~~g~~~~~-~~~~~~d~~~~~~~~~~~~~a~~~~ 195 (281)
T 2g5c_A 153 RLKLVKRVWEDVGGVVEY-MSPELHDYVFGVVSHLPHAVAFALV 195 (281)
T ss_dssp HHHHHHHHHHHTTCEEEE-CCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEE-cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887 4667778999999988765434333
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=170.33 Aligned_cols=248 Identities=15% Similarity=0.139 Sum_probs=170.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc-------------ccCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL-------------IANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~-------------~~~s~~e~~~~aDvV~l~vp~ 212 (988)
+|||+|||+|.||+.+|..|+++|++|++| +++++++.+++.|.. .++++++ +.++|+||+|||.
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilavk~ 96 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCVKS 96 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECCCG
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEccc
Confidence 479999999999999999999999999999 999999999886642 2455544 5799999999998
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc-----ccCCcccccC-CCeEEEEeC
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP-----VSGGVKRASM-GELTIMAAG 286 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap-----v~g~~~~a~~-g~l~~~~gg 286 (988)
. ++++++ +.+.+.+.++++||.++++.... ..+.+.++ -..+.+. +..+|..+.. +.-.+.+|.
T Consensus 97 ~-~~~~~l---~~l~~~l~~~~~iv~~~nGi~~~-~~l~~~~~-----~~vl~g~~~~~a~~~gP~~~~~~~~g~~~ig~ 166 (318)
T 3hwr_A 97 T-DTQSAA---LAMKPALAKSALVLSLQNGVENA-DTLRSLLE-----QEVAAAVVYVATEMAGPGHVRHHGRGELVIEP 166 (318)
T ss_dssp G-GHHHHH---HHHTTTSCTTCEEEEECSSSSHH-HHHHHHCC-----SEEEEEEEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred c-cHHHHH---HHHHHhcCCCCEEEEeCCCCCcH-HHHHHHcC-----CcEEEEEEEEeEEEcCCeEEEEcCCceEEEcC
Confidence 7 588888 67888888999998876654322 34555542 1122111 1122322221 111233444
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCC
Q 001973 287 TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG---------------------VHIASAAEAMAFGARLGL 345 (988)
Q Consensus 287 ~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~---------------------~~~~~~~Ea~~la~~~Gi 345 (988)
.+..+.++++|+..+.++++ ..++-...|.|++.|+..+ ++...+.|+..++++.|+
T Consensus 167 -~~~~~~l~~~l~~~~~~~~~-~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~ 244 (318)
T 3hwr_A 167 -TSHGANLAAIFAAAGVPVET-SDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGV 244 (318)
T ss_dssp -CTTTHHHHHHHHHTTCCEEE-CSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred -CHHHHHHHHHHHhCCCCcEe-chHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCC
Confidence 45567899999999988877 6899999999998886443 455678899999999997
Q ss_pred C-----HHHHHHHHHhcC-CCccccccc-cccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 346 N-----TRVLFNIITDSG-GSSWMFENR-VPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 346 d-----~~~~~~~l~~~~-~~s~~~~~~-~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
+ .+.+.+++.... ..|.++... ..+...-|+. .+++++.++++|+++|..+.++++++....
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~sSM~qD~~~gr~tEid~i-----------~G~vv~~a~~~gv~tP~~~~l~~ll~~~e~ 313 (318)
T 3hwr_A 245 KLPDDVALAIRRIAETMPRQSSSTAQDLARGKRSEIDHL-----------NGLIVRRGDALGIPVPANRVLHALVRLIED 313 (318)
T ss_dssp CCCTTHHHHHHHHHHHSTTCCCHHHHHHHTTCCCSGGGT-----------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhcCCCCcHHHHHHHcCChhHHHHH-----------HHHHHHHHHHhCCCCcHHHHHHHHHHHHHh
Confidence 5 233444443322 222222211 1111111111 368899999999999999999998876543
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-16 Score=177.98 Aligned_cols=188 Identities=14% Similarity=0.124 Sum_probs=139.5
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHH--------HHHHhcCC-------------cccCCHHHHhccC
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTL--------TKFQNVGG-------------LIANSPAEAAKDV 203 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~--------~~l~~~G~-------------~~~~s~~e~~~~a 203 (988)
..+||+|||+|.||.+||.+|+++|++|++||+++++. +++.+.|. +.+++++ ++++|
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~a 131 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNC 131 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTC
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccC
Confidence 34799999999999999999999999999999999843 23444443 3567775 68899
Q ss_pred cEEEEEcCChHHHHHHHccccchhhhCCCCCEEEec-CCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCCCe
Q 001973 204 GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILS-STVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 204 DvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~-st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
|+||+|||...+++..++ .++.+.++++++|++. ||.++. ++++.+. +...|.||++ |+. ...+
T Consensus 132 DlVIeAVpe~~~vk~~v~--~~l~~~~~~~aIlasnTSsl~i~---~ia~~~~~p~r~iG~Hffn-Pv~-------~m~L 198 (460)
T 3k6j_A 132 DLIVESVIEDMKLKKELF--ANLENICKSTCIFGTNTSSLDLN---EISSVLRDPSNLVGIHFFN-PAN-------VIRL 198 (460)
T ss_dssp SEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCHH---HHHTTSSSGGGEEEEECCS-STT-------TCCE
T ss_pred CEEEEcCCCCHHHHHHHH--HHHHhhCCCCCEEEecCCChhHH---HHHHhccCCcceEEEEecc-hhh-------hCCE
Confidence 999999998776655444 5788889999999765 555543 3443332 1223567766 432 2344
Q ss_pred EEEEeC---CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 281 TIMAAG---TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 281 ~~~~gg---~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
+.++.| +++.++.+.++++.+|+.++++.+.+| .++|+++.. +++|++.++++.|++++++.+++.
T Consensus 199 vEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pG-----fi~Nril~~----~~~EA~~l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 199 VEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKS-----FVFNRLLHV----YFDQSQKLMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCCH-----HHHHHHHHH----HHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEecccH-----HHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 555544 789999999999999999988533333 256666654 589999999999999999999886
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-15 Score=171.43 Aligned_cols=254 Identities=16% Similarity=0.156 Sum_probs=172.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------------cCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------------ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------------~~s~~e~~~~aDvV~l~vp~ 212 (988)
+|||+|||+|.||+.+|..|+++|++|++|+|+ ++.+.+++.|... ++++++ +..+|+||+|||.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~ 80 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA 80 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence 479999999999999999999999999999996 6788888777532 456666 5899999999998
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecCCCCH------------------HHHHHHHHHHHhcCCCceEecCc-----cc
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSSTVSP------------------GFVSQLERRLQFEGKDLKLVDAP-----VS 269 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p------------------~~~~~l~~~l~~~~~g~~~ldap-----v~ 269 (988)
. ++++++ +.+.+.+.++++||.++++.+ +..+.+.+.++. -+++.+- ..
T Consensus 81 ~-~~~~~~---~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~----~~v~~gv~~~~a~~ 152 (335)
T 3ghy_A 81 P-ALESVA---AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPT----RHVLGCVVHLTCAT 152 (335)
T ss_dssp H-HHHHHH---GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCG----GGEEEEEECCCEEE
T ss_pred h-hHHHHH---HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCc----ccEEEEEEEEEEEE
Confidence 5 578888 678888889999999887732 222344555432 1222221 11
Q ss_pred CCccccc-CCCeEEEEe----CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHH--------------------
Q 001973 270 GGVKRAS-MGELTIMAA----GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQL-------------------- 324 (988)
Q Consensus 270 g~~~~a~-~g~l~~~~g----g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~-------------------- 324 (988)
.+|..+. .+.-.+.+| .+.+..+.+..+|+..+.++++ ..++-...|.|++.|+
T Consensus 153 ~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~-~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~ 231 (335)
T 3ghy_A 153 VSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAEC-SEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDP 231 (335)
T ss_dssp SSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEE-CSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSH
T ss_pred cCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEe-CchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcCh
Confidence 1222221 122234444 3457788899999999988876 6899999999976553
Q ss_pred -HHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhC
Q 001973 325 -LAGVHIASAAEAMAFGARLGLN----TRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQ 399 (988)
Q Consensus 325 -~~~~~~~~~~Ea~~la~~~Gid----~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~ 399 (988)
...++..++.|+.+++++.|++ .+.+.+++...... .+.|+ .|+..+..-.+.-.=.+++++.++++
T Consensus 232 ~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~-------~sSM~-qD~~~gr~~tEid~i~G~vv~~a~~~ 303 (335)
T 3ghy_A 232 LVSAFCLAVMAEAKAIGARIGCPIEQSGEARSAVTRQLGAF-------KTSML-QDAEAGRGPLEIDALVASVREIGLHV 303 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCSCHHHHHHHHHTTCSC-------CCTTT-C-----CCCCCHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHhccCCC-------CcHHH-HHHHcCCCCchHHHHhhHHHHHHHHh
Confidence 2346678899999999999975 34444444432211 11122 22222110111222357889999999
Q ss_pred CCCchHHHHHHHHHHHHHH
Q 001973 400 RVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 400 gi~~pi~~a~~~~~~~a~~ 418 (988)
|+++|.++.++++++...+
T Consensus 304 gv~~P~~~~l~~li~~~e~ 322 (335)
T 3ghy_A 304 GVPTPQIDTLLGLVRLHAQ 322 (335)
T ss_dssp TCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887554
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-15 Score=161.04 Aligned_cols=194 Identities=18% Similarity=0.231 Sum_probs=146.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc--ccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL--IANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~--~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
|||+|||+|.||..++..|.++|++|++|||++++.+.+.+.|.. .++++.++ .++|+||+|+|.. .++.++ +
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~-~~~~~~---~ 75 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQ-LILPTL---E 75 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHH-HHHHHH---H
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHH-HHHHHH---H
Confidence 589999999999999999999999999999999999998887763 46788888 8999999999964 577777 5
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccC----Cccccc----CCCeEEEEe---CCHHHHH
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSG----GVKRAS----MGELTIMAA---GTEESLK 292 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g----~~~~a~----~g~l~~~~g---g~~~~~~ 292 (988)
.+.+.++++++|++++++.+...+.+.+.+. +++.+ |+.| +|..+. .+..++++. ++++..+
T Consensus 76 ~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~------~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~ 149 (279)
T 2f1k_A 76 KLIPHLSPTAIVTDVASVKTAIAEPASQLWS------GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLA 149 (279)
T ss_dssp HHGGGSCTTCEEEECCSCCHHHHHHHHHHST------TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHH
T ss_pred HHHhhCCCCCEEEECCCCcHHHHHHHHHHhC------CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHH
Confidence 7778888999999998888877666555432 34444 5543 444433 354555553 4788999
Q ss_pred HHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHh
Q 001973 293 STGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLN--TRVLFNIITD 356 (988)
Q Consensus 293 ~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid--~~~~~~~l~~ 356 (988)
.++++|+.+|.++++ .++.....+.|++.|.-..+.. ++.++ +...|.+ .+....++..
T Consensus 150 ~v~~l~~~~g~~~~~-~~~~~~~~~~~~~~~~p~~i~~-al~~~---~~~~~~~~~~~~~~~l~~~ 210 (279)
T 2f1k_A 150 CLRSVLEPLGVKIYL-CTPADHDQAVAWISHLPVMVSA-ALIQA---CAGEKDGDILKLAQNLASS 210 (279)
T ss_dssp HHHHHHGGGTCEEEE-CCHHHHHHHHHHHTHHHHHHHH-HHHHH---HHTCSCHHHHHHHHHHCCH
T ss_pred HHHHHHHHcCCEEEE-cCHHHHHHHHHHHhhHHHHHHH-HHHHH---HHhcccccchhHHHhhcCC
Confidence 999999999998887 4778889999999997554433 33333 3445655 4555555443
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-15 Score=166.12 Aligned_cols=249 Identities=14% Similarity=0.045 Sum_probs=168.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc---------------ccCCHHHHhccCcEEEEEcC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL---------------IANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~---------------~~~s~~e~~~~aDvV~l~vp 211 (988)
|||+|||+|.||+.+|..|+++|++|++|+|++ .+.+++.|++ .+++++++.+.+|+||+|||
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK 80 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK 80 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence 699999999999999999999999999999987 3677765532 24566776668999999999
Q ss_pred ChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCC------eEEEEe
Q 001973 212 NEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGE------LTIMAA 285 (988)
Q Consensus 212 ~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~------l~~~~g 285 (988)
... +++++ +.+.+.+.++++||.+.++.. ..+.+.+.++. -.++.+|++.+......+. -.+.+|
T Consensus 81 ~~~-~~~~l---~~l~~~l~~~t~Iv~~~nGi~-~~~~l~~~~~~----~~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig 151 (320)
T 3i83_A 81 VVE-GADRV---GLLRDAVAPDTGIVLISNGID-IEPEVAAAFPD----NEVISGLAFIGVTRTAPGEIWHQAYGRLMLG 151 (320)
T ss_dssp CCT-TCCHH---HHHTTSCCTTCEEEEECSSSS-CSHHHHHHSTT----SCEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CCC-hHHHH---HHHHhhcCCCCEEEEeCCCCC-hHHHHHHHCCC----CcEEEEEEEeceEEcCCCEEEECCCCEEEEe
Confidence 876 55565 567778888898888776532 11344554433 3566666554322222222 224443
Q ss_pred ----CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH
Q 001973 286 ----GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG--------------------VHIASAAEAMAFGA 341 (988)
Q Consensus 286 ----g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~--------------------~~~~~~~Ea~~la~ 341 (988)
.+.+..+.+..+|+..+.++++ ..++-...|.|++-|+..+ ++..++.|+.++++
T Consensus 152 ~~~~~~~~~~~~l~~~l~~~~~~~~~-~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~va~ 230 (320)
T 3i83_A 152 NYPGGVSERVKTLAAAFEEAGIDGIA-TENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRAVAA 230 (320)
T ss_dssp ESSSCCCHHHHHHHHHHHHTTSCEEE-CSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHhCCCCceE-CHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 3457788999999999988877 6899999999998875322 45567899999999
Q ss_pred HcCCCH-----HHHHHHHHhcC-CCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001973 342 RLGLNT-----RVLFNIITDSG-GSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLA 415 (988)
Q Consensus 342 ~~Gid~-----~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~ 415 (988)
+.|++. +.+.++..... ..+.++... ..+.... ++ .=.+++++.++++|+++|+.+.++++++.
T Consensus 231 a~G~~l~~~~~~~~~~~~~~~~~~~sSM~qD~----~~gr~tE---id---~i~G~vv~~a~~~gv~~P~~~~l~~~l~~ 300 (320)
T 3i83_A 231 ANGHPLPEDIVEKNVASTYKMPPYKTSMLVDF----EAGQPME---TE---VILGNAVRAGRRTRVAIPHLESVYALMKL 300 (320)
T ss_dssp HTTCCCCTTHHHHHHHHHHHSCCCCCHHHHHH----HHTCCCC---HH---HHTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HcCCCCChHHHHHHHHHHhcCCCCCCcHHHHH----HhCCCch---HH---HHccHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999862 33333333221 111111111 0110010 11 11358899999999999999999998876
Q ss_pred HH
Q 001973 416 GS 417 (988)
Q Consensus 416 a~ 417 (988)
..
T Consensus 301 ~e 302 (320)
T 3i83_A 301 LE 302 (320)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=184.75 Aligned_cols=247 Identities=17% Similarity=0.130 Sum_probs=150.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------cC-------------CcccCCHHHHhc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------VG-------------GLIANSPAEAAK 201 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G-------------~~~~~s~~e~~~ 201 (988)
++||+|||+|.||..||.+|+++||+|++||++++.++...+ .| ++.++++ ++++
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~ 390 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFR 390 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGT
T ss_pred CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHC
Confidence 368999999999999999999999999999999998876432 23 2345677 5788
Q ss_pred cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEec-CCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCC
Q 001973 202 DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILS-STVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMG 278 (988)
Q Consensus 202 ~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~-st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g 278 (988)
+||+||+|||...+++..++ .++.+.+++++++++. ||.++.. +++.+. +...|.||++ |+.. .
T Consensus 391 ~aDlVIeaVpe~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~~---la~~~~~p~~~iG~hf~~-P~~~-------~ 457 (725)
T 2wtb_A 391 DVDMVIEAVIENISLKQQIF--ADLEKYCPQHCILASNTSTIDLNK---IGERTKSQDRIVGAHFFS-PAHI-------M 457 (725)
T ss_dssp TCSEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHHH---HTTTCSCTTTEEEEEECS-STTT-------C
T ss_pred CCCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCHHH---HHHHhcCCCCEEEecCCC-Cccc-------C
Confidence 99999999999887755544 5677889999998765 4554432 333321 1123567765 4322 2
Q ss_pred CeEEEEeC---CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 279 ELTIMAAG---TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 279 ~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
.++.++.| +++.++.+.++++.+|+.++++.+.+|. ++|+++. .+++|++.++++ |++++++.+++
T Consensus 458 ~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~Nril~----~~~~Ea~~l~~~-G~~~e~id~~~- 526 (725)
T 2wtb_A 458 PLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGF-----AVNRMFF----PYTQAAMFLVEC-GADPYLIDRAI- 526 (725)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESSTTT-----THHHHHH----HHHHHHHHHHHT-TCCHHHHHHHH-
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCCccH-----HHHHHHH----HHHHHHHHHHHC-CCCHHHHHHHH-
Confidence 34555555 7899999999999999998886444442 4555554 469999999998 99999999988
Q ss_pred hcCCCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCCh
Q 001973 356 DSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDD 426 (988)
Q Consensus 356 ~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~ 426 (988)
.+.+.. + +|- .--|+. .++...+-...+.+...+.....|+++...+.-+...+.|.|.++|
T Consensus 527 ~~~g~p-~----Gp~-~l~D~v---Gld~~~~i~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~GfY~y 588 (725)
T 2wtb_A 527 SKFGMP-M----GPF-RLCDLV---GFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLY 588 (725)
T ss_dssp HHHTCS-S----CHH-HHHHHH---CHHHHHHHHHHHHHHSGGGCCCCTHHHHHHTTC-------------
T ss_pred HHcCCC-C----CHH-HHHHHh---chHHHHHHHHHHHHhcCCccCChHHHHHHHHCCCceecCCceeEeC
Confidence 433221 0 010 000000 1222222222222221121022266666555556667777777776
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=161.68 Aligned_cols=255 Identities=11% Similarity=0.044 Sum_probs=166.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc--------------ccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL--------------IANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~--------------~~~s~~e~~~~aDvV~l~vp~ 212 (988)
|||+|||+|.||+.+|..|+++|++|++|+|++ .+.+++.|.. .++++++ +..+|+||+|||.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~ 79 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKT 79 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCC
Confidence 689999999999999999999999999999986 4777776642 2245544 6799999999998
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcC--CCceEecCcccCCccccc-CCCeEEEEe----
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEG--KDLKLVDAPVSGGVKRAS-MGELTIMAA---- 285 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~--~g~~~ldapv~g~~~~a~-~g~l~~~~g---- 285 (988)
.. +++++ +.+.+.+.++++||.+.++-. ..+.+.+.++... .++.+..+-. .+|..+. .+.-.+.+|
T Consensus 80 ~~-~~~~l---~~l~~~l~~~~~iv~l~nGi~-~~~~l~~~~~~~~v~~~~~~~~a~~-~~p~~v~~~~~g~~~ig~~~~ 153 (312)
T 3hn2_A 80 FA-NSRYE---ELIRPLVEEGTQILTLQNGLG-NEEALATLFGAERIIGGVAFLCSNR-GEPGEVHHLGAGRIILGEFLP 153 (312)
T ss_dssp GG-GGGHH---HHHGGGCCTTCEEEECCSSSS-HHHHHHHHTCGGGEEEEEEEEECCB-CSSSEEEECEEEEEEEEESSC
T ss_pred CC-cHHHH---HHHHhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEEEEeeeEE-cCCcEEEECCCCeEEEecCCC
Confidence 65 66666 577888888999888876542 2234555554310 0111111211 1222221 122223443
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcC
Q 001973 286 GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG---------------------VHIASAAEAMAFGARLG 344 (988)
Q Consensus 286 g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~---------------------~~~~~~~Ea~~la~~~G 344 (988)
.+.+..+.+..+|+..+.++++ ..++-...|.|++-|+..+ ++..++.|+.+++++.|
T Consensus 154 ~~~~~~~~l~~~l~~~g~~~~~-~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G 232 (312)
T 3hn2_A 154 RDTGRIEELAAMFRQAGVDCRT-TDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQG 232 (312)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEE-CSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHHhCCCCcEE-ChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcC
Confidence 2457788899999999988876 6899999999998776533 45567889999999999
Q ss_pred --CC-----HHHHHHHHHhcC-CCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001973 345 --LN-----TRVLFNIITDSG-GSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAG 416 (988)
Q Consensus 345 --id-----~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a 416 (988)
++ .+.+.++..... ..|.++... ..+.... ++ .=.+++++.++++|+++|+.+.++++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~sSM~qD~----~~gr~tE---id---~i~G~vv~~a~~~gv~~P~~~~l~~ll~~~ 302 (312)
T 3hn2_A 233 LATFIADGYVDDMLEFTDAMGEYKPSMEIDR----EEGRPLE---IA---AIFRTPLAYGAREGIAMPRVEMLATLLEQA 302 (312)
T ss_dssp CSSCCCTTHHHHHHHHHTTSCSCCCHHHHHH----HTTCCCC---HH---HHTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHhcCCCCCchHHHHH----HhCCCcc---HH---HHhhHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 64 223333322211 111111111 1111110 11 113588999999999999999999999987
Q ss_pred HHcCC
Q 001973 417 SAAGW 421 (988)
Q Consensus 417 ~~~g~ 421 (988)
...|+
T Consensus 303 ~~~~~ 307 (312)
T 3hn2_A 303 TGEGH 307 (312)
T ss_dssp TTC--
T ss_pred Hhccc
Confidence 77664
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=186.56 Aligned_cols=186 Identities=16% Similarity=0.186 Sum_probs=137.5
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhcC-------------CcccCCHHHHh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF-----------QNVG-------------GLIANSPAEAA 200 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G-------------~~~~~s~~e~~ 200 (988)
..+||+|||+|.||.+||.+|+++||+|++||+++++++.. .+.| ++.++++ +++
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~ 391 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDF 391 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHH
Confidence 34689999999999999999999999999999999887763 3334 2356677 778
Q ss_pred ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEec-CCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccC
Q 001973 201 KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILS-STVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASM 277 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~-st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~ 277 (988)
++||+||+|||...+++..++ .++.+.+++++++++. ||.++. ++++.+. +...|.||++ |+. .
T Consensus 392 ~~aDlVIeaV~e~~~vk~~v~--~~l~~~~~~~~IlasntStl~i~---~la~~~~~~~~~ig~hf~~-P~~-------~ 458 (715)
T 1wdk_A 392 GNVDLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTISIS---LLAKALKRPENFVGMHFFN-PVH-------M 458 (715)
T ss_dssp GGCSEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCHH---HHGGGCSCGGGEEEEECCS-STT-------T
T ss_pred CCCCEEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEeCCCCCCHH---HHHHHhcCccceEEEEccC-Ccc-------c
Confidence 999999999999877765544 5677888899999865 455443 2333331 1123556655 432 2
Q ss_pred CCeEEEEeC---CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 001973 278 GELTIMAAG---TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNII 354 (988)
Q Consensus 278 g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l 354 (988)
+.++.++.| +++.++.+.++++.+|+.++++.+.+|. ++||++. .+++|++.++++ |++++++.+++
T Consensus 459 ~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gf-----i~Nril~----~~~~Ea~~l~~~-G~~~~~id~~~ 528 (715)
T 1wdk_A 459 MPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGF-----LVNRVLF----PYFGGFAKLVSA-GVDFVRIDKVM 528 (715)
T ss_dssp CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTTT-----THHHHHH----HHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCCCCh-----hhhHHHH----HHHHHHHHHHHC-CCCHHHHHHHH
Confidence 334544544 7899999999999999998886444442 4566554 468999999997 99999999988
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7.6e-15 Score=161.36 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=126.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhHHHHHHhcCC--cccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRPTLTKFQNVGG--LIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~G~--~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+|||+|||+|+||..+|..|.++ |++|++|||++++.+.+.+.|. ..++++.++++++|+||+|||... .++++
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~- 83 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFI- 83 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHH-
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHH-
Confidence 46999999999999999999988 6899999999999998888776 356788888899999999999866 47777
Q ss_pred cccchhhh-CCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccC----Cccccc----CCCeEEEE---eCCH
Q 001973 222 GDLGAVSA-LSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSG----GVKRAS----MGELTIMA---AGTE 288 (988)
Q Consensus 222 ~~~~i~~~-l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g----~~~~a~----~g~l~~~~---gg~~ 288 (988)
+.+.+. ++++++|++++++.+...+.+.+.+.. .+.+++. .|++| ++..+. .|..++++ ++++
T Consensus 84 --~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~--~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~ 159 (290)
T 3b1f_A 84 --KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKD--KPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKP 159 (290)
T ss_dssp --HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTT--SSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCT
T ss_pred --HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccc--cCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCH
Confidence 567777 889999999999988777777777754 3567776 47765 444443 55544444 4678
Q ss_pred HHHHHHHHHHHhcCCeEEEE
Q 001973 289 ESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 289 ~~~~~~~~ll~~~g~~v~~~ 308 (988)
+.++.++++|+.+|.+++++
T Consensus 160 ~~~~~v~~l~~~~G~~~~~~ 179 (290)
T 3b1f_A 160 NTIPALQDLLSGLHARYVEI 179 (290)
T ss_dssp THHHHHHHHTGGGCCEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEc
Confidence 89999999999999988774
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-16 Score=174.54 Aligned_cols=259 Identities=12% Similarity=0.029 Sum_probs=173.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC--------eEEEEeCChhH-----HHHHHhc--------------CCcccCCHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF--------TVIGYDVYRPT-----LTKFQNV--------------GGLIANSPAE 198 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~--------~V~v~dr~~~~-----~~~l~~~--------------G~~~~~s~~e 198 (988)
..||+|||.|.||++||..|+++|| +|++|.|+++. .+.++.. ++.+++++.+
T Consensus 34 p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~ 113 (391)
T 4fgw_A 34 PFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLID 113 (391)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHH
Confidence 3499999999999999999999875 59999998753 4445442 2346789999
Q ss_pred HhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCH-HH--HHHHHHHHHhc-CCCceEecCcccCCccc
Q 001973 199 AAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSP-GF--VSQLERRLQFE-GKDLKLVDAPVSGGVKR 274 (988)
Q Consensus 199 ~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p-~~--~~~l~~~l~~~-~~g~~~ldapv~g~~~~ 274 (988)
+++++|+||++||+.. ++.++ +.+.++++++.++|.++.+.- ++ .+.+.+.+.+. +..+.++.+|-+.....
T Consensus 114 al~~ad~ii~avPs~~-~r~~l---~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~~~~vLsGPs~A~EVa 189 (391)
T 4fgw_A 114 SVKDVDIIVFNIPHQF-LPRIC---SQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGIQCGALSGANIATEVA 189 (391)
T ss_dssp HHTTCSEEEECSCGGG-HHHHH---HHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCCEEEEEECSCCHHHHH
T ss_pred HHhcCCEEEEECChhh-hHHHH---HHhccccCCCceeEEeccccccccccchhHHHHHHHHhCccceeccCCchHHHhh
Confidence 9999999999999855 88888 678888999999999885531 11 12233333332 12234455555444444
Q ss_pred ccCCCeEEEEeCCH---------HHHHHHHHHHHhcCCeEEEEeCC-----------------cchHHHHHHHHHHHHHH
Q 001973 275 ASMGELTIMAAGTE---------ESLKSTGSVLSALSEKLYVIKGG-----------------CGAGSGVKMANQLLAGV 328 (988)
Q Consensus 275 a~~g~l~~~~gg~~---------~~~~~~~~ll~~~g~~v~~~~g~-----------------~g~a~~~Kl~~N~~~~~ 328 (988)
....+.+++++.+. ...+.++.+|+.--.++|. ..+ .|....+++..|+..++
T Consensus 190 ~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~-s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAAL 268 (391)
T 4fgw_A 190 QEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSV-IEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAI 268 (391)
T ss_dssp TTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEE-ESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEE-eCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 44455555554432 2346788888766666665 344 25666677889999999
Q ss_pred HHHHHHHHHHHHHHc---CCCHHHHHHHHHhc----CCCcccccccccc-ccCCCCCCCchh------------hHHHHH
Q 001973 329 HIASAAEAMAFGARL---GLNTRVLFNIITDS----GGSSWMFENRVPH-MLDNDYTPYSAL------------DIFVKD 388 (988)
Q Consensus 329 ~~~~~~Ea~~la~~~---Gid~~~~~~~l~~~----~~~s~~~~~~~~~-~~~~~~~~~~~l------------~~~~kD 388 (988)
+..+++|+.+|+.++ |-++.++..+..-| +++| ++|+.-+ .+.+ .+.++ .+....
T Consensus 269 itrGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~s--SRNr~~G~~lg~---~G~~~~~~~~~~~~g~v~EGv~t 343 (391)
T 4fgw_A 269 QRVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAG--GRNVKVARLMAT---SGKDAWECEKELLNGQSAQGLIT 343 (391)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHS--SHHHHHHHHHHH---TCCCHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeecCCCcccceeEEecC--CccHHHHHHHHh---cCCCHHHHHHHHhCCCEEehHHH
Confidence 999999999999998 44554454332222 2223 3443221 1110 01122 234455
Q ss_pred HHHHHHHHHhCCC--CchHHHHHHHHHH
Q 001973 389 MGIIARECLSQRV--PLHISTIAHQLFL 414 (988)
Q Consensus 389 l~~~~~~a~~~gi--~~pi~~a~~~~~~ 414 (988)
.+.+.++++++|+ ++||++++++++.
T Consensus 344 a~~v~~l~~~~~v~~emPI~~~vy~IL~ 371 (391)
T 4fgw_A 344 CKEVHEWLETCGSVEDFPLFEAVYQIVY 371 (391)
T ss_dssp HHHHHHHHHHHTCSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 6688899999999 8999999999987
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=155.65 Aligned_cols=173 Identities=16% Similarity=0.133 Sum_probs=137.2
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-C-------CcccCCHHHHhccCcEEEEEcCChHHHH
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-G-------GLIANSPAEAAKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G-------~~~~~s~~e~~~~aDvV~l~vp~~~~~~ 217 (988)
|||+||| +|.||..++..|+++|++|++|||++++.+.+.+. + .. .+++.++++++|+||+|+|.. .++
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~~-~~~ 78 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPWE-HAI 78 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCHH-HHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCChh-hHH
Confidence 5899999 99999999999999999999999999988877653 3 33 457788889999999999964 467
Q ss_pred HHHccccchhhhCCCCCEEEecCCCCH------------HHHHHHHHHHHhcCCCceEecC--cccCCcccc--cCCCeE
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTVSP------------GFVSQLERRLQFEGKDLKLVDA--PVSGGVKRA--SMGELT 281 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~~p------------~~~~~l~~~l~~~~~g~~~lda--pv~g~~~~a--~~g~l~ 281 (988)
+++ +.+.+.+ ++++++++++... ...+++++.++ +.+++.+ |+.+..... ..+.++
T Consensus 79 ~~~---~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~ 150 (212)
T 1jay_A 79 DTA---RDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE----SEKVVSALHTIPAARFANLDEKFDWD 150 (212)
T ss_dssp HHH---HHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT----CSCEEECCTTCCHHHHHCTTCCCCEE
T ss_pred HHH---HHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC----CCeEEEEccchHHHHhhCcCCCCCcc
Confidence 776 4565656 4899999998332 34667777664 3567777 655554443 567778
Q ss_pred EEEeCC-HHHHHHHHHHHHhc-CCeEEEEeCCcchHHHHHHHHHHHHHHHH
Q 001973 282 IMAAGT-EESLKSTGSVLSAL-SEKLYVIKGGCGAGSGVKMANQLLAGVHI 330 (988)
Q Consensus 282 ~~~gg~-~~~~~~~~~ll~~~-g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~ 330 (988)
++++|+ ++.++.++++|+.+ |.+++++ ++.+.+.++|.+.|++...+.
T Consensus 151 ~~~~g~~~~~~~~v~~l~~~~~G~~~~~~-~~~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 151 VPVCGDDDESKKVVMSLISEIDGLRPLDA-GPLSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp EEEEESCHHHHHHHHHHHHHSTTEEEEEE-ESGGGHHHHHTHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCceec-cchhHHHHhcchHHHHHHHHH
Confidence 888886 88999999999999 9988774 789999999999998877543
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=169.34 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=113.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
++||++.++++++++|++.++++.|+|++.+.++++.+++.||+++.+.+++++++|.| |+++++.||++++.++|++.
T Consensus 200 l~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~~~~~KDl~~~~~~a~~~ 279 (320)
T 4dll_A 200 LANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQLKDMRNALATAQEI 279 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcccHHHHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhc
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLG 118 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g 118 (988)
|+++|+.+.+.+.|+++.+.|+|++|++++++++++..+
T Consensus 280 g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~ 318 (320)
T 4dll_A 280 GFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNG 318 (320)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC--
T ss_pred CCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988665
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.1e-15 Score=163.08 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=136.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhcc----CcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKD----VGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~----aDvV~l~vp~~~~~~~vl~ 221 (988)
.+||+|||+|.||.+||.+|.++|++|++|||++++.+.+.+.|+..++++.+++++ +|+||+|||. ..+..++
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl- 85 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL- 85 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH-
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH-
Confidence 469999999999999999999999999999999999999999999888898887764 7999999995 5678887
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccCCc-cccc-------CCCeEEEEeC---CHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSGGV-KRAS-------MGELTIMAAG---TEE 289 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g~~-~~a~-------~g~l~~~~gg---~~~ 289 (988)
+++.+. +++.+|+|++++++...+.+.+.+ .+.+|+. .|++|+. .+.. .|..++++.+ +++
T Consensus 86 --~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~----~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e 158 (341)
T 3ktd_A 86 --DAVHTH-APNNGFTDVVSVKTAVYDAVKARN----MQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGT 158 (341)
T ss_dssp --HHHHHH-CTTCCEEECCSCSHHHHHHHHHTT----CGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSC
T ss_pred --HHHHcc-CCCCEEEEcCCCChHHHHHHHHhC----CCCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChh
Confidence 566665 789999999999988777766543 2467887 5888764 2221 3445677654 456
Q ss_pred --------HHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH
Q 001973 290 --------SLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG 327 (988)
Q Consensus 290 --------~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~ 327 (988)
.++.++++|+.+|.+++++ ++-.....+.++..+-..
T Consensus 159 ~~~~~~~~~~~~v~~l~~~~Ga~v~~~-~~~~HD~~~A~vshlPh~ 203 (341)
T 3ktd_A 159 DINSTWISIWKDVVQMALAVGAEVVPS-RVGPHDAAAARVSHLTHI 203 (341)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCEEEEC-CHHHHHHHHHHHTHHHHH
T ss_pred hhccchHHHHHHHHHHHHHcCCEEEEe-CHHHHHHHHHHHhHHHHH
Confidence 8999999999999998884 666666777766665443
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-15 Score=157.52 Aligned_cols=167 Identities=13% Similarity=0.172 Sum_probs=124.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEE-EeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIG-YDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
+|||+|||+|+||.++|..|+++|++|++ |||++++.+++.+. |.....+..+.++++|+||+|+|. ..+++++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~--- 98 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIV--- 98 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHH---
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHH---
Confidence 47999999999999999999999999999 99999999887654 776666777778999999999995 5578887
Q ss_pred cchhhhCCCCCEEEecCCCCH------------HHHHHHHHHHHhcC--CCceEecCcccC-CcccccCCCeEEEEeCCH
Q 001973 224 LGAVSALSSGASIILSSTVSP------------GFVSQLERRLQFEG--KDLKLVDAPVSG-GVKRASMGELTIMAAGTE 288 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p------------~~~~~l~~~l~~~~--~g~~~ldapv~g-~~~~a~~g~l~~~~gg~~ 288 (988)
..+.+ + ++++||++++..+ ...+.+.+.++... +.+.++.+++.. ++.....+...++.+.++
T Consensus 99 ~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g~~~ 176 (220)
T 4huj_A 99 TQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVVKAFNTLPAAVLAADPDKGTGSRVLFLSGNHS 176 (220)
T ss_dssp TTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEEEESCSSCHHHHTSCSBCSSCEEEEEEEESCH
T ss_pred HHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEEECCCCCCHHHhhhCcccCCCCeeEEEeCCCH
Confidence 45555 4 5889999997652 15566666664210 112223344444 444333334455666788
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCcchHHHHH
Q 001973 289 ESLKSTGSVLSALSEKLYVIKGGCGAGSGVK 319 (988)
Q Consensus 289 ~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~K 319 (988)
+..+.++++++.+|.++++ .|+++.+.++.
T Consensus 177 ~~~~~v~~l~~~~G~~~~~-~G~l~~a~~~~ 206 (220)
T 4huj_A 177 DANRQVAELISSLGFAPVD-LGTLAASGPIQ 206 (220)
T ss_dssp HHHHHHHHHHHHTTCEEEE-CCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEe-eCChhhcchhh
Confidence 9999999999999999988 58888876643
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.7e-15 Score=164.56 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=112.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
++||+++++++.+++|++.++++.|+|++.+.++++.+++.||+++++.+++++++|.| |.++++.||+++++++|++.
T Consensus 192 l~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~ 271 (310)
T 3doj_A 192 LIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMRLALALGDEN 271 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHh
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWEN 115 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~ 115 (988)
|+++|+++.+.++|+++.++|+|++|++++++++++
T Consensus 272 g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 307 (310)
T 3doj_A 272 AVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKF 307 (310)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHC
T ss_pred CCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHh
Confidence 999999999999999999999999999999999876
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=167.13 Aligned_cols=187 Identities=16% Similarity=0.197 Sum_probs=135.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------cC-----------CcccCCHHHHhccC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------VG-----------GLIANSPAEAAKDV 203 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G-----------~~~~~s~~e~~~~a 203 (988)
.+||+|||+|.||..||.+|+++||+|++||++++.++.+.+ .| ..+++++ +.+++|
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a 115 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV 115 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence 469999999999999999999999999999999988776543 12 1345666 568899
Q ss_pred cEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh--cCCCceEecCcccCCcccccCCCeE
Q 001973 204 GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF--EGKDLKLVDAPVSGGVKRASMGELT 281 (988)
Q Consensus 204 DvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~--~~~g~~~ldapv~g~~~~a~~g~l~ 281 (988)
|+||+|||...+++..++ .++.+.++++++|++ +|+++... ++++.+.. ...|.||+ +|+. ...++
T Consensus 116 DlVIeaVpe~~~~k~~v~--~~l~~~~~~~~ii~s-nTs~~~~~-~la~~~~~~~~~ig~hf~-~P~~-------~~~lv 183 (463)
T 1zcj_A 116 DLVVEAVFEDMNLKKKVF--AELSALCKPGAFLCT-NTSALNVD-DIASSTDRPQLVIGTHFF-SPAH-------VMRLL 183 (463)
T ss_dssp SEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEE-CCSSSCHH-HHHTTSSCGGGEEEEEEC-SSTT-------TCCEE
T ss_pred CEEEEcCCCCHHHHHHHH--HHHHhhCCCCeEEEe-CCCCcCHH-HHHHHhcCCcceEEeecC-CCcc-------cceeE
Confidence 999999998765544333 567778889999887 55555444 55554421 11356665 4532 23344
Q ss_pred EEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 282 IMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 282 ~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
.++. ++++.++.+.++++.+|+.++++.+..|. ++|+++.. +++|++.++++ |++++++.+++.
T Consensus 184 evv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gf-----i~Nrll~~----~~~ea~~l~~~-G~~~~~id~~~~ 250 (463)
T 1zcj_A 184 EVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGF-----VGNRMLAP----YYNQGFFLLEE-GSKPEDVDGVLE 250 (463)
T ss_dssp EEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTT-----THHHHHHH----HHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccH-----HHHHHHHH----HHHHHHHHHHc-CCCHHHHHHHHH
Confidence 4444 58899999999999999998885333342 44555543 36999999887 899999999886
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.2e-15 Score=152.99 Aligned_cols=155 Identities=12% Similarity=0.137 Sum_probs=116.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.|||+|||+|.||+++|..|+++|++|++|||+++ +++++|+||+|+| +..+++++ +.
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~---~~ 76 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALA---KQ 76 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHH---HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHH---HH
Confidence 36999999999999999999999999999999875 4568999999999 66688887 56
Q ss_pred hhhhCCCCCEEEecCCCCH--H-------H----HHHHHHHHHhcCCCceEec------CcccCCcccccCCCeEEEEeC
Q 001973 226 AVSALSSGASIILSSTVSP--G-------F----VSQLERRLQFEGKDLKLVD------APVSGGVKRASMGELTIMAAG 286 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p--~-------~----~~~l~~~l~~~~~g~~~ld------apv~g~~~~a~~g~l~~~~gg 286 (988)
+.+.++ ++++|++++..+ + + .+.+.+.++ +.+++. +|....+.....+...+++++
T Consensus 77 l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~----~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g 151 (209)
T 2raf_A 77 YATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP----DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAG 151 (209)
T ss_dssp THHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT----TSEEEECSTTSCHHHHHHSEETTTEECEEEEEE
T ss_pred HHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC----CCcEEEeeecccHhhccccccCCCCCceeEEcC
Confidence 667777 999999988443 1 2 344544442 345665 343333222221234555555
Q ss_pred -CHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHH
Q 001973 287 -TEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGV 328 (988)
Q Consensus 287 -~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~ 328 (988)
+++..+.++++|+.+|.++++ .++++.+.++|.+.|++..+
T Consensus 152 ~~~~~~~~v~~ll~~~G~~~~~-~~~i~~a~~~K~i~~l~~~~ 193 (209)
T 2raf_A 152 NDDSAKQRFTRALADSPLEVKD-AGKLKRARELEAMGFMQMTL 193 (209)
T ss_dssp SCHHHHHHHHHHTTTSSCEEEE-EESGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCceEe-CCCHhHHHHhcchHHHHHHH
Confidence 468899999999999998888 47899999999998887543
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=152.66 Aligned_cols=181 Identities=12% Similarity=0.099 Sum_probs=137.3
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+||+||| +|.||.++|..|.+.|++|++|||+++. ++.+++++||+||+|||... ++.++ ++
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~aDvVilavp~~~-~~~vl---~~ 84 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVPINL-TLETI---ER 84 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSCGGG-HHHHH---HH
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------CHHHHhcCCCEEEEeCCHHH-HHHHH---HH
Confidence 5899999 9999999999999999999999998752 56788899999999999866 78887 57
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCcccccCCCeEEEEeC-CHHHHHHHHHHHHhcCC
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKRASMGELTIMAAG-TEESLKSTGSVLSALSE 303 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~a~~g~l~~~~gg-~~~~~~~~~~ll~~~g~ 303 (988)
+.+.++++++|+|++++.....+.+.+.+ +.+++.+ |++|+......+..++++.+ +++.++.++++|+.+|.
T Consensus 85 l~~~l~~~~iv~~~~svk~~~~~~~~~~~-----~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~ 159 (298)
T 2pv7_A 85 LKPYLTENMLLADLTSVKREPLAKMLEVH-----TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGA 159 (298)
T ss_dssp HGGGCCTTSEEEECCSCCHHHHHHHHHHC-----SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTC
T ss_pred HHhhcCCCcEEEECCCCCcHHHHHHHHhc-----CCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHHHHcCC
Confidence 77888899999999999887666554432 2467765 77776655555665555543 68889999999999999
Q ss_pred eEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 001973 304 KLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNII 354 (988)
Q Consensus 304 ~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l 354 (988)
+++++ ++......++++.+....+... +.|++ ...|++.+...++.
T Consensus 160 ~~~~~-~~~~~d~~~a~~~~~p~~~a~~-l~~~l---~~~g~~~~~~~~la 205 (298)
T 2pv7_A 160 KIYQT-NATEHDHNMTYIQALRHFSTFA-NGLHL---SKQPINLANLLALS 205 (298)
T ss_dssp EEEEC-CHHHHHHHHHHHTHHHHHHHHH-HHHHH---TTSSCCHHHHHHTC
T ss_pred EEEEC-CHHHHHHHHHHHHHHHHHHHHH-HHHHH---HhcCCCHHHHHhhc
Confidence 88874 5566677888887765543222 33332 13788877666543
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-15 Score=161.41 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=110.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
++||++.+.++.+++|++.++++.|+|++.+.++++.+++.||+++++.+++++++|.| |.++++.||+++++++|++.
T Consensus 172 l~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~ 251 (287)
T 3pef_A 172 LVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRV 251 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHH
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWE 114 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~ 114 (988)
|+++|+.+.+.+.|+++.++|+|++|+++++++++
T Consensus 252 g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pef_A 252 GQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286 (287)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGC
T ss_pred CCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHh
Confidence 99999999999999999999999999999988764
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=160.04 Aligned_cols=114 Identities=24% Similarity=0.335 Sum_probs=110.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
++||++.+.++.+++|++.++++.|+|++.+.++++.+++.||+++++.+++++++|.| |+++++.||+++++++|++.
T Consensus 172 l~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~ 251 (287)
T 3pdu_A 172 LVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRL 251 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHHhhccccccCCCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHH
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWE 114 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~ 114 (988)
|+++|+.+.+.+.|+++.+.|+|++|+++++++++
T Consensus 252 g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pdu_A 252 GQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286 (287)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred CCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 99999999999999999999999999999999875
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.2e-15 Score=162.16 Aligned_cols=116 Identities=34% Similarity=0.662 Sum_probs=110.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
|+||++.+.++.+++|++.++++.|+|++.+.++++.+++.||+++++.+++++++|.| |.++++.||+++++++|++.
T Consensus 180 l~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kD~~~~~~~a~~~ 259 (303)
T 3g0o_A 180 IIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVKDLGLVADTAKAL 259 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCchHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhh
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENV 116 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~ 116 (988)
|+++|+.+.+.+.|+++.+.|+|++|+++++++++++
T Consensus 260 g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 296 (303)
T 3g0o_A 260 RFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296 (303)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC---
T ss_pred CCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhc
Confidence 9999999999999999999999999999999988764
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.8e-16 Score=159.93 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=118.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.|||+|||+|.||..+|.+|.+.|++|++|||+++ .+.+...|+... ++.++++++|+||+|+|.. .++.++ +
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~-~~~~v~----~ 91 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHRE-HYDFLA----E 91 (201)
Confidence 36899999999999999999999999999999987 566666676665 7888889999999999985 477665 2
Q ss_pred hhhhCCCCCEEEecCCCCHHH------HHHHHHHHHhcCCCceEecCcccCCcccccCCCe-----EEEEeCCHHHHHHH
Q 001973 226 AVSALSSGASIILSSTVSPGF------VSQLERRLQFEGKDLKLVDAPVSGGVKRASMGEL-----TIMAAGTEESLKST 294 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~------~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l-----~~~~gg~~~~~~~~ 294 (988)
+.+ ..++++||++++..|.. .+.+.+.+.. ...+.+-..-+......|.+ .+++|++++.++.+
T Consensus 92 l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~----~~vvra~~n~~a~~~~~g~l~g~~~~~~~g~~~~~~~~v 166 (201)
T 2yjz_A 92 LAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG----AHVVKAFNTISAWALQSGTLDASRQVFVCGNDSKAKDRV 166 (201)
Confidence 332 44789999999988732 2233333321 11111110001112222332 57778888999999
Q ss_pred HHHHHhcCCeEEEEeCCcchHHHHHHH
Q 001973 295 GSVLSALSEKLYVIKGGCGAGSGVKMA 321 (988)
Q Consensus 295 ~~ll~~~g~~v~~~~g~~g~a~~~Kl~ 321 (988)
+++|+.+|.++++ +|+++.+.++|.+
T Consensus 167 ~~ll~~~G~~~~~-~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 167 MDIARTLGLTPLD-QGSLVAAKEIENY 192 (201)
Confidence 9999999999988 5999999999964
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-15 Score=160.00 Aligned_cols=189 Identities=15% Similarity=0.149 Sum_probs=129.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeE-EEEeCChhHHHHHHh-cCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTV-IGYDVYRPTLTKFQN-VGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~-~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
|||+|||+|+||..|+..|.++ ++| .+|||++++.+++.+ .|. .++++.++++++|+||+|+|+.. +++++ .
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~~~v~---~ 76 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-IKTVA---N 76 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-HHHHH---T
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-HHHHH---H
Confidence 6899999999999999999998 999 599999999988875 366 67788888889999999999876 67776 3
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCccccc-CCCeEEEEeCCHHHHHHHHHHHHhcCC
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRAS-MGELTIMAAGTEESLKSTGSVLSALSE 303 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~-~g~l~~~~gg~~~~~~~~~~ll~~~g~ 303 (988)
++. .++++||++|+..|.... . ....+..+...|+++++.... ...+.++++++++.++.++++++.+|.
T Consensus 77 ~l~---~~~~ivi~~s~~~~~~~l--~----~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lG~ 147 (276)
T 2i76_A 77 HLN---LGDAVLVHCSGFLSSEIF--K----KSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISG 147 (276)
T ss_dssp TTC---CSSCCEEECCSSSCGGGG--C----SSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCS
T ss_pred Hhc---cCCCEEEECCCCCcHHHH--H----HhhccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHHHHhCC
Confidence 443 578999999977655431 1 110112233456666554444 355567778888889999999999998
Q ss_pred eEEEEeCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHH
Q 001973 304 KLYVIKGGCGA---GSGVKMANQLLAGVHIASAAEAMAFGARLGLNTR--VLFNIIT 355 (988)
Q Consensus 304 ~v~~~~g~~g~---a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~--~~~~~l~ 355 (988)
+++++ ++.+. ....+++.|.+. ..+.|+..++++.|++.+ .+.+++.
T Consensus 148 ~~~~v-~~~~~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~Gl~~~~a~~~~l~~ 199 (276)
T 2i76_A 148 KYFVI-PSEKKKAYHLAAVIASNFPV----ALAYLSKRIYTLLGLDEPELLIHTLMK 199 (276)
T ss_dssp CEEEC-CGGGHHHHHHHHHHHHTTHH----HHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CEEEE-CHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 88875 44332 234466777554 347888889999999987 4555444
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=145.14 Aligned_cols=171 Identities=16% Similarity=0.118 Sum_probs=123.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+|||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|+... +..++++++|+||+|+|.. .++.++ +
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~~-~~~~v~---~- 101 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFRE-HYSSLC---S- 101 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCGG-GSGGGG---G-
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCChH-HHHHHH---H-
Confidence 469999999999999999999999999999999999988877777765 7888899999999999964 455555 2
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHH----HHHHHHhcCCCceEec--CcccCCc--ccccCCC-eEEEEeCCHHHHHHHHH
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQ----LERRLQFEGKDLKLVD--APVSGGV--KRASMGE-LTIMAAGTEESLKSTGS 296 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~----l~~~l~~~~~g~~~ld--apv~g~~--~~a~~g~-l~~~~gg~~~~~~~~~~ 296 (988)
+.+.+ ++++||++++..+..... ..+.+.+...+.+++. .++.+.+ .....+. .+++.|++++.++.+++
T Consensus 102 l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~~ 180 (215)
T 2vns_A 102 LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSE 180 (215)
T ss_dssp GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHHHH
T ss_pred HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEeccccccHhHhcccccCCceeEEEecCCHHHHHHHHH
Confidence 44445 789999999998755321 1222222112222322 1211110 1111233 46777889999999999
Q ss_pred HHHhcCCeEEEEeCCcchHHHHHHHHHH
Q 001973 297 VLSALSEKLYVIKGGCGAGSGVKMANQL 324 (988)
Q Consensus 297 ll~~~g~~v~~~~g~~g~a~~~Kl~~N~ 324 (988)
+|+.+|.++++ +|+.|++..++.+.++
T Consensus 181 ll~~~G~~~~~-~g~~~~~~~~e~~~~~ 207 (215)
T 2vns_A 181 MALAMGFMPVD-MGSLASAWEVEAMPLR 207 (215)
T ss_dssp HHHHTTCEEEE-CCSGGGHHHHHHSCCB
T ss_pred HHHHcCCceEe-ecchhhhhHhhhhhhh
Confidence 99999999888 5899999998854443
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-14 Score=156.93 Aligned_cols=246 Identities=15% Similarity=0.093 Sum_probs=160.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCC---cccCCHHHHh-ccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGG---LIANSPAEAA-KDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~---~~~~s~~e~~-~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
|||+|||+|.||+.+|..|+++|++|++|+|+++.++.....|. ....++.+.+ ..+|+||+|||... +++++
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~-~~~~l-- 79 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQ-LDAVI-- 79 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGG-HHHHG--
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccC-HHHHH--
Confidence 69999999999999999999999999999999765432222232 1223445554 78999999999864 78887
Q ss_pred ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc-----ccCCcccccCCCeEEEEeCCHHHHHHHHHH
Q 001973 223 DLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP-----VSGGVKRASMGELTIMAAGTEESLKSTGSV 297 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap-----v~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 297 (988)
+.+.+.+.++++||.+.++...... ++. -+.+.+. ...+|..+..+...+. .++.+..+.+..+
T Consensus 80 -~~l~~~l~~~~~iv~~~nGi~~~~~-----~~~----~~v~~g~~~~~a~~~~pg~v~~~~~~~~-~~~~~~~~~l~~~ 148 (294)
T 3g17_A 80 -PHLTYLAHEDTLIILAQNGYGQLEH-----IPF----KNVCQAVVYISGQKKGDVVTHFRDYQLR-IQDNALTRQFRDL 148 (294)
T ss_dssp -GGHHHHEEEEEEEEECCSSCCCGGG-----CCC----SCEEECEEEEEEEEETTEEEEEEEEEEE-EECSHHHHHHHHH
T ss_pred -HHHHHhhCCCCEEEEeccCcccHhh-----CCC----CcEEEEEEEEEEEEcCCCEEEECCCEEe-cCccHHHHHHHHH
Confidence 6788888888888887765422111 221 1122211 1112222221111122 2456778889999
Q ss_pred HHhcCCeEEEEeCCcchHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCC--HHHHHHHHH
Q 001973 298 LSALSEKLYVIKGGCGAGSGVKMANQLLAG--------------------VHIASAAEAMAFGARLGLN--TRVLFNIIT 355 (988)
Q Consensus 298 l~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~--------------------~~~~~~~Ea~~la~~~Gid--~~~~~~~l~ 355 (988)
|+.-+.++++ ..++-...|.|++-|+..+ ++..++.|+.+++++.|++ .+.+.+.+.
T Consensus 149 l~~~~~~~~~-~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~ 227 (294)
T 3g17_A 149 VQDSQIDIVL-EANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMT 227 (294)
T ss_dssp TTTSSCEEEE-ESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHhCCCceEE-ChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9998988877 6899999999998887322 3456688999999999975 444444433
Q ss_pred h---cC--CCccccccc-cccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 356 D---SG--GSSWMFENR-VPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 356 ~---~~--~~s~~~~~~-~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
. .+ ..|.++... ..+...-|+. .+++++.++++|+++|..+.++++++...+
T Consensus 228 ~~~~~~~~~~sSM~qD~~~gr~tEid~i-----------~G~vv~~a~~~gv~~P~~~~l~~ll~~~e~ 285 (294)
T 3g17_A 228 IYQGYPDEMGTSMYYDIVHQQPLEVEAI-----------QGFIYRRAREHNLDTPYLDTIYSFLRAYQQ 285 (294)
T ss_dssp HHHTSCTTCCCHHHHHHHTTCCCSGGGT-----------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcHHHHHHcCCCccHHHh-----------hhHHHHHHHHhCCCCChHHHHHHHHHHHHh
Confidence 2 11 112222111 1111111111 368899999999999999999999887654
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-14 Score=153.92 Aligned_cols=63 Identities=38% Similarity=0.476 Sum_probs=59.6
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
|||||+++||++|++++|||||||++|+|+++|+++|||+++||||||+++++.+|.|++++.
T Consensus 1 Mmlv~~~~ll~~A~~~~yAv~AfNv~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~ 63 (286)
T 1gvf_A 1 MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIY 63 (286)
T ss_dssp -CBCCSHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999976554
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-14 Score=156.88 Aligned_cols=112 Identities=12% Similarity=0.062 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc--CCchhhhccccccccCCCCc--chHHHHHHhHHHHHHHHHhcC
Q 001973 5 LLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAA--GNSWIFKNYIPNLLRGDAKL--HFLNAFIQNLGIALDMAKTLA 80 (988)
Q Consensus 5 ~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~--~~s~~~~~~~~~~~~~~~~~--f~l~l~~KDl~la~~~a~~~g 80 (988)
+++++++++++|++.+++++|+|++.+.++++.+. +.||+++.+.|++++++|.| |+++++.||+++++++|++.|
T Consensus 181 ~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~KDl~~~~~~a~~~g 260 (306)
T 3l6d_A 181 AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQARLDVHADAFAHIAQSLHAQG 260 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHcC
Confidence 56778999999999999999999999999999986 79999999999999999998 579999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhh
Q 001973 81 FPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENV 116 (988)
Q Consensus 81 ~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~ 116 (988)
+++|+.+.+.+.|+++.+.|+|++|++++++++++.
T Consensus 261 ~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~ 296 (306)
T 3l6d_A 261 VWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFARE 296 (306)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC--
T ss_pred CCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhH
Confidence 999999999999999999999999999999987653
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-14 Score=152.18 Aligned_cols=64 Identities=42% Similarity=0.566 Sum_probs=60.1
Q ss_pred CcccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcc-cCHHHHH
Q 001973 918 PVRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKV-QYITLVT 981 (988)
Q Consensus 918 ~~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~-~~~~~~~ 981 (988)
.|||||+++||++|++++|||||||++|+|+++|+++|||+++||||||+++++.+| .|.+++.
T Consensus 3 ~M~lv~~~~ll~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~ 67 (288)
T 3q94_A 3 AMPLVSMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVV 67 (288)
T ss_dssp -CCCCCSHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHH
T ss_pred cccccCHHHHHHHHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999 5887553
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.3e-14 Score=151.63 Aligned_cols=63 Identities=32% Similarity=0.520 Sum_probs=59.6
Q ss_pred cccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 919 VRISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
|||||+++||++|++++|||||||++|+|+++|+++|||+++||||||+++++.+|.|.+++.
T Consensus 1 M~lv~~~~ll~~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~ 63 (323)
T 2isw_A 1 MPLCTLRQMLGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLK 63 (323)
T ss_dssp -CBCCHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHH
T ss_pred CCCCCHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999977654
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-14 Score=151.56 Aligned_cols=64 Identities=34% Similarity=0.489 Sum_probs=60.6
Q ss_pred ccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHhh
Q 001973 920 RISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTSS 983 (988)
Q Consensus 920 ~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~~ 983 (988)
||||+++||++|++++|||||||++|+|+++|+++|||+++||||||+++++.+|.|.+++..+
T Consensus 1 mlv~~~~ll~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~ 64 (307)
T 3n9r_A 1 MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGM 64 (307)
T ss_dssp CBCCHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999998766443
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.9e-13 Score=146.81 Aligned_cols=245 Identities=14% Similarity=0.065 Sum_probs=149.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCC----------HHHHhccCcEEEEEcCChHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANS----------PAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s----------~~e~~~~aDvV~l~vp~~~~~ 216 (988)
|||+|||+|.||+.+|..|+ +|++|++|+|++++.+.+++.|.....+ ..+....+|+||+|||... +
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~-~ 80 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQHQ-L 80 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGGG-H
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHHH-H
Confidence 69999999999999999999 9999999999999999998877654311 1245678999999999755 7
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCC-----cc---cccCCCeEEEEe---
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGG-----VK---RASMGELTIMAA--- 285 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~-----~~---~a~~g~l~~~~g--- 285 (988)
++++ +.+.+ +.+++ ||.+.++... .+.+.+.++ .-+++.+-+..+ |. ....|. +.+|
T Consensus 81 ~~~l---~~l~~-~~~~~-ivs~~nGi~~-~e~l~~~~~----~~~vl~g~~~~~a~~~~pg~v~~~~~g~--~~iG~~~ 148 (307)
T 3ego_A 81 QSVF---SSLER-IGKTN-ILFLQNGMGH-IHDLKDWHV----GHSIYVGIVEHGAVRKSDTAVDHTGLGA--IKWSAFD 148 (307)
T ss_dssp HHHH---HHTTS-SCCCE-EEECCSSSHH-HHHHHTCCC----SCEEEEEEECCEEEECSSSEEEEEECCC--EEEEECT
T ss_pred HHHH---HHhhc-CCCCe-EEEecCCccH-HHHHHHhCC----CCcEEEEEEeeceEECCCCEEEEeeeee--EEEEeCC
Confidence 7776 34443 34455 7766665442 223333222 223333322111 11 122233 2333
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcC
Q 001973 286 GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAG---------------------VHIASAAEAMAFGARLG 344 (988)
Q Consensus 286 g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~---------------------~~~~~~~Ea~~la~~~G 344 (988)
+..+.++.+...|...+.++.+ ..++-...|.|++.|+..+ ++...+.|+..++++.+
T Consensus 149 ~~~~~~~~l~~~l~~ag~~~~~-~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~~ 227 (307)
T 3ego_A 149 DAEPDRLNILFQHNHSDFPIYY-ETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKLEN 227 (307)
T ss_dssp TCCGGGGTTTTSSCCTTSCEEE-CSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCSC
T ss_pred CCcHHHHHHHHHhhhCCCCcEe-chhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhccC
Confidence 2234444555555555667766 6899999999999887544 33456778888876542
Q ss_pred CCHHHHHH----HHHhcC-CCccccccccccccCCCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 001973 345 LNTRVLFN----IITDSG-GSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSA 418 (988)
Q Consensus 345 id~~~~~~----~l~~~~-~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~ 418 (988)
++.+.+ ++.... ..|.++... ..+..+. ++.+ .+++++.++++|+++|..+.++++++...+
T Consensus 228 --~~~~~~~~~~~~~~~~~~~sSM~qD~----~~gr~tE---id~i---~G~vv~~a~~~gv~tP~~~~l~~li~~~e~ 294 (307)
T 3ego_A 228 --EEKAWERVQAVCGQTKENRSSMLVDV----IGGRQTE---ADAI---IGYLLKEASLQGLDAVHLEFLYGSIKALER 294 (307)
T ss_dssp --HHHHHHHHHHHHHHTTTCCCHHHHHH----HHTCCCS---HHHH---HHHHHHHHHHTTCCCHHHHHHHHHHHHTC-
T ss_pred --hHHHHHHHHHHHHhcCCCCchHHHHH----HcCCccc---HHHh---hhHHHHHHHHcCCCCcHHHHHHHHHHHHHh
Confidence 333333 222111 112221111 0110010 1111 358899999999999999999998886544
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.5e-13 Score=137.66 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=113.7
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
...|||+|||+|.||++||.+|.++||+|++||+. ++ +++|| |+|||+. .+.+++
T Consensus 4 ~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl--- 58 (232)
T 3dfu_A 4 APRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYV--- 58 (232)
T ss_dssp CCCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHH---
T ss_pred CCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHH---
Confidence 34579999999999999999999999999999983 12 56889 9999997 578887
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALS 302 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g 302 (988)
+++.+.++++++|+|+|+..+... .+.+.. .+.+|+. .|+.+.+ .++.+++++.++.++++++.+|
T Consensus 59 ~~l~~~l~~g~ivvd~sgs~~~~v---l~~~~~--~g~~fvg~HPm~g~~--------~~i~a~d~~a~~~l~~L~~~lG 125 (232)
T 3dfu_A 59 EKLSAFARRGQMFLHTSLTHGITV---MDPLET--SGGIVMSAHPIGQDR--------WVASALDELGETIVGLLVGELG 125 (232)
T ss_dssp HHHHTTCCTTCEEEECCSSCCGGG---GHHHHH--TTCEEEEEEEEETTE--------EEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCEEEEECCcCHHHH---HHHHHh--CCCcEEEeeeCCCCc--------eeeeCCCHHHHHHHHHHHHHhC
Confidence 578888899999999876544322 222223 4677775 4776543 5566678889999999999999
Q ss_pred CeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001973 303 EKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARL 343 (988)
Q Consensus 303 ~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~ 343 (988)
.+++++ ++-..... .+.-......+..+.++.++.+..
T Consensus 126 ~~vv~~-~~~~hd~~--~AAvsh~nhLv~L~~~A~~ll~~~ 163 (232)
T 3dfu_A 126 GSIVEI-ADDKRAQL--AAALTYAGFLSTLQRDASYFLDEF 163 (232)
T ss_dssp CEECCC-CGGGHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEe-CHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998875 33332222 111112344455677777776443
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.8e-14 Score=149.56 Aligned_cols=63 Identities=41% Similarity=0.511 Sum_probs=59.7
Q ss_pred ccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHh
Q 001973 920 RISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTS 982 (988)
Q Consensus 920 ~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~ 982 (988)
||||+++||++|++++|||||||++|+|+++|+++|||+++||||||+++++.+|.|.+++..
T Consensus 1 mlv~~~~ll~~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~ 63 (305)
T 1rvg_A 1 MLVTGLEILKKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLM 63 (305)
T ss_dssp CBCCHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999776543
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-12 Score=139.40 Aligned_cols=196 Identities=17% Similarity=0.093 Sum_probs=140.6
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hcC--------------CcccCCHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ-----------NVG--------------GLIANSPAEA 199 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G--------------~~~~~s~~e~ 199 (988)
...||+|||+|.||..||..++.+|++|++||++++..+... +.| +..++++.++
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a 84 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA 84 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence 346899999999999999999999999999999998765422 222 2346788999
Q ss_pred hccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccC
Q 001973 200 AKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASM 277 (988)
Q Consensus 200 ~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~ 277 (988)
+++||+|+-|+|..-+++.-++ .++-+.++++.++...|++.+-+. +++.+. ++..|.||...|-.
T Consensus 85 ~~~ad~ViEav~E~l~iK~~lf--~~l~~~~~~~aIlaSNTSsl~is~--ia~~~~~p~r~ig~HffNP~~~-------- 152 (319)
T 3ado_A 85 VEGVVHIQECVPENLDLKRKIF--AQLDSIVDDRVVLSSSSSCLLPSK--LFTGLAHVKQCIVAHPVNPPYY-------- 152 (319)
T ss_dssp TTTEEEEEECCCSCHHHHHHHH--HHHHTTCCSSSEEEECCSSCCHHH--HHTTCTTGGGEEEEEECSSTTT--------
T ss_pred hccCcEEeeccccHHHHHHHHH--HHHHHHhhhcceeehhhhhccchh--hhhhccCCCcEEEecCCCCccc--------
Confidence 9999999999999888876665 677778888888876655544432 333222 22235566654311
Q ss_pred CCeEEEEe---CCHHHHHHHHHHHHhcCCeEEEEeC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 001973 278 GELTIMAA---GTEESLKSTGSVLSALSEKLYVIKG-GCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNI 353 (988)
Q Consensus 278 g~l~~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g-~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~ 353 (988)
-.++-++. .+++.++.+..+++.+|++.+++.. .+| ++.|-+ ...+++|++.+.+..+.+++++..+
T Consensus 153 m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pG------Fi~NRl---~~~~~~EA~~lv~eGvas~edID~~ 223 (319)
T 3ado_A 153 IPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDG------FVLNRL---QYAIISEAWRLVEEGIVSPSDLDLV 223 (319)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTT------TTHHHH---HHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred cchHHhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCC------EeHHHH---HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 12344444 4789999999999999998775443 344 333433 3456899999999999999999999
Q ss_pred HHhcCCCc
Q 001973 354 ITDSGGSS 361 (988)
Q Consensus 354 l~~~~~~s 361 (988)
+..+.+..
T Consensus 224 ~~~g~g~~ 231 (319)
T 3ado_A 224 MSDGLGMR 231 (319)
T ss_dssp HHTTHHHH
T ss_pred HHhCCCCC
Confidence 88765433
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.8e-12 Score=140.62 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=129.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH-HHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc-
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT-LTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL- 224 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~- 224 (988)
|+|+|||+|.||.++|.+|.+.|++|++|||++++ .+.+.+.|+..+ ++.++++++|+||+|+|... ...++ +
T Consensus 17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~-~~~v~---~~ 91 (338)
T 1np3_A 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEF-QGRLY---KE 91 (338)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHH-HHHHH---HH
T ss_pred CEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHH-HHHHH---HH
Confidence 58999999999999999999999999999999876 566667788766 88899999999999999866 46777 4
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC-cccCCccc-------ccCCCeEEEE---eCCHHHHHH
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKR-------ASMGELTIMA---AGTEESLKS 293 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~-------a~~g~l~~~~---gg~~~~~~~ 293 (988)
++.+.++++++|+++++... .+.. +. ...+..++.. | .+|.. ...|...+++ ..+++..+.
T Consensus 92 ~i~~~l~~~~ivi~~~gv~~----~~~~-~~-~~~~~~vv~~~P--~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~ 163 (338)
T 1np3_A 92 EIEPNLKKGATLAFAHGFSI----HYNQ-VV-PRADLDVIMIAP--KAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNV 163 (338)
T ss_dssp HTGGGCCTTCEEEESCCHHH----HTTS-SC-CCTTCEEEEEEE--SSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHH
T ss_pred HHHhhCCCCCEEEEcCCchh----HHHh-hc-CCCCcEEEeccC--CCCchhHHHHHhccCCCeEEEEecCCCCHHHHHH
Confidence 67788899999999865322 1111 11 1124445433 4 23332 1224434333 346778899
Q ss_pred HHHHHHhcCC-e--EEEEeCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 001973 294 TGSVLSALSE-K--LYVIKGGCGAGSGVKMANQ-LLAGVHIASAAEAMAFGARLGLNTRVL 350 (988)
Q Consensus 294 ~~~ll~~~g~-~--v~~~~g~~g~a~~~Kl~~N-~~~~~~~~~~~Ea~~la~~~Gid~~~~ 350 (988)
+..+++.+|. + ++.+ ..-.......++.+ .+.+....+++.++....+.|++++..
T Consensus 164 ~~~l~~~lG~~~agv~~~-~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 164 ALSYACGVGGGRTGIIET-TFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp HHHHHHHTTHHHHCEEEC-CHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHcCCCccceEee-chhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999998 5 6653 22223334445444 333334445555555566889998754
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-12 Score=139.95 Aligned_cols=120 Identities=23% Similarity=0.378 Sum_probs=113.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
+++|++.+.++.++.|++.++++.|++++.+.+++..+..+|+.+..+.+.+++++|.| |.++++.||++++.++|++.
T Consensus 176 l~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~ 255 (299)
T 1vpd_A 176 LANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGV 255 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCChHHHHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999999999989998887888999999988 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhccc
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~ 120 (988)
|+++|+.+.+.+.|+++.+.|+|++|++++++++++..+.+
T Consensus 256 gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~ 296 (299)
T 1vpd_A 256 GAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKVE 296 (299)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHHHHTCC
T ss_pred CCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999877753
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-12 Score=138.73 Aligned_cols=122 Identities=30% Similarity=0.540 Sum_probs=114.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhcccc-ccccCCCCc-chHHHHHHhHHHHHHHHHh
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIP-NLLRGDAKL-HFLNAFIQNLGIALDMAKT 78 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-~~~~~~~~~-f~l~l~~KDl~la~~~a~~ 78 (988)
+++|.+...++.++.|++.++++.|++++.+.+++..+..+++.+..+.+ .+++++|.| |.++.+.||++++++++++
T Consensus 175 l~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~ 254 (301)
T 3cky_A 175 IVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKDLGLALEAGKE 254 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999888998888888 899999998 9999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhccccc
Q 001973 79 LAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNIT 122 (988)
Q Consensus 79 ~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~ 122 (988)
.|+++|+.+.+.+.|+++.+.|+|++|++++++++++..+.+..
T Consensus 255 ~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~ 298 (301)
T 3cky_A 255 GNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMTGVSVS 298 (301)
T ss_dssp HTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHHHHCCCCS
T ss_pred hCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999988876544
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.8e-11 Score=137.40 Aligned_cols=264 Identities=12% Similarity=0.059 Sum_probs=150.8
Q ss_pred CeEEEEccchHHHHHHHHHHh-CCCeEEEEe---CChhHHHHH-HhcC---------C----------cccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLR-SNFTVIGYD---VYRPTLTKF-QNVG---------G----------LIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~-~G~~V~v~d---r~~~~~~~l-~~~G---------~----------~~~~s~~e~~~~ 202 (988)
|||+|||+|+||+.+|..|++ +||+|++|| |++++++.+ .+.| . ..++++++++++
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG 82 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence 699999999999999999998 599999999 888888874 3332 1 145688888999
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecC-CCCHHHHHHHHHHHHhcCCCceEe---cCcccCC---cc--
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSS-TVSPGFVSQLERRLQFEGKDLKLV---DAPVSGG---VK-- 273 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~s-t~~p~~~~~l~~~l~~~~~g~~~l---dapv~g~---~~-- 273 (988)
+|+||+|||+.. .++++ +.+.+.+.++++|+..+ +.... ....+.+.+......+. ..|.... |.
T Consensus 83 aD~Vilav~~~~-~~~v~---~~l~~~l~~~~ivv~~~~~~G~~--~~~~~~l~~~~~~~v~~~~~~~~~~~~~~gpg~~ 156 (404)
T 3c7a_A 83 ADVVILTVPAFA-HEGYF---QAMAPYVQDSALIVGLPSQAGFE--FQCRDILGDKAAAVSMMSFETLPWACRIKEFGRK 156 (404)
T ss_dssp CSEEEECSCGGG-HHHHH---HHHTTTCCTTCEEEETTCCTTHH--HHHHHHHGGGGGTSEEEEESSCSEEEEEEETTTE
T ss_pred CCEEEEeCchHH-HHHHH---HHHHhhCCCCcEEEEcCCCccHH--HHHHHHHHhcCCCeEEEEecCchHhhcccCCCcE
Confidence 999999999876 67777 67888888899998853 33212 11223333211111121 2222111 21
Q ss_pred --cccCCCeEEEEe---CCHHHHHHHHHHHHhcCC-e-EEEEeCCcc--------hHHHHH------------------H
Q 001973 274 --RASMGELTIMAA---GTEESLKSTGSVLSALSE-K-LYVIKGGCG--------AGSGVK------------------M 320 (988)
Q Consensus 274 --~a~~g~l~~~~g---g~~~~~~~~~~ll~~~g~-~-v~~~~g~~g--------~a~~~K------------------l 320 (988)
....+. .+..| ++.+..+++..+|+.++. . +.+ ..++- ....+- +
T Consensus 157 v~~~~~~~-~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~di~~~~l~~N~~~~~~~~l~~~~~~~g~~~~~~~~~ 234 (404)
T 3c7a_A 157 VEVLGTKS-VLAASLIKGTAKTVDPLSTLQMLHGAEPVFRL-AKHFLEMLIMSYSFVHPAILFGRWGSWDGKPVPEAPLF 234 (404)
T ss_dssp EEEEEECS-EEEEEEECCSSCCSCHHHHHHHHHCSSSEEEE-CSCHHHHHHTTCTTHHHHHHHHHHTTCCSCCBSSCCBS
T ss_pred EEEEEECc-eEEEEEccCCcchHHHHHHHHHHhCCCCceeE-cCCEeeeeecCCceeccHHHHHHHHhhhcCCCCCCCcc
Confidence 011111 11222 111233455666666664 3 333 33331 000000 1
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHc-----CCCHH---HHHHHHHhcC------CCccc--cccc-------cccc--c
Q 001973 321 ANQ---LLAGVHIASAAEAMAFGARL-----GLNTR---VLFNIITDSG------GSSWM--FENR-------VPHM--L 372 (988)
Q Consensus 321 ~~N---~~~~~~~~~~~Ea~~la~~~-----Gid~~---~~~~~l~~~~------~~s~~--~~~~-------~~~~--~ 372 (988)
..| ....++..++.|+.+++++. |++.. .+.+.+.... ..|.. +... .| + .
T Consensus 235 ~~~~~~~~~~l~~~~~~E~~~va~a~~~~~~G~~~~~~~~~~d~~~~~~~~~~~~~~s~~~~~~~~~~~~d~~~P-~~~t 313 (404)
T 3c7a_A 235 YQGIDQATADMLTACSNECKDVANAIMAACPGNDLSDVKDIYQWYLEYYHEDIQDDHDLYHAITTNKSYKGLVHP-VKAV 313 (404)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCTTCCCHHHHHHHHSTTTBSCCSSHHHHHHTBGGGTTCBCC-EEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCCCHHHHHHHhCCCccCChhhHHHHHHhhhhhccCCCC-CCCc
Confidence 122 45567778899999999999 98762 2223332211 11211 1110 01 0 0
Q ss_pred C----CCCCCCchhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc
Q 001973 373 D----NDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAA 419 (988)
Q Consensus 373 ~----~~~~~~~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~ 419 (988)
. .++..+...+...--+..+.++++++|+++|+++.++++++.....
T Consensus 314 e~~~~~d~~~r~~~Edv~~~~~~v~~la~~~gV~tP~~~~l~~l~~~~~~~ 364 (404)
T 3c7a_A 314 DGGVAPDFGNRYLTEDIPMGMIVFKGVAIAAGVAIPSNDKLIMWAQEKIGK 364 (404)
T ss_dssp TTEEEECCCSSTTTTTTTTTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTC
T ss_pred CCCccCCccccccccccccchHHHHHHHHHhCCCCchHHHHHHHHHHHhCc
Confidence 0 0111111111111234688999999999999999999998876654
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=135.67 Aligned_cols=120 Identities=24% Similarity=0.320 Sum_probs=112.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhcccc-ccccCCCCc-chHHHHHHhHHHHHHHHHh
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIP-NLLRGDAKL-HFLNAFIQNLGIALDMAKT 78 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-~~~~~~~~~-f~l~l~~KDl~la~~~a~~ 78 (988)
+++|.+.+.++.++.|++.++++.|++++.+.+++..+.++|++++.+.+ .+++++|.| |+++.+.||++.+++++++
T Consensus 166 ~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~ 245 (289)
T 2cvz_A 166 AINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGIAMGVLDG 245 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHHHHhccchhhcCCCCCCcChHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999888888887778 899999988 9999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhccc
Q 001973 79 LAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120 (988)
Q Consensus 79 ~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~ 120 (988)
.|+++|+.+.+.+.|+++.+.|+|++|++++++++++..+.+
T Consensus 246 ~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~~~~~~ 287 (289)
T 2cvz_A 246 EKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGGVE 287 (289)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHHHTSC
T ss_pred cCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999998877654
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=135.25 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=112.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
+++|++.+.++.++.|++.++++.|++++.+.+++..+..+|+++..+.+.+++++|.| |.++.+.||++++++++++.
T Consensus 173 l~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~kd~~~~~~~a~~~ 252 (295)
T 1yb4_A 173 VANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDLNLALQSAKAL 252 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCchHHHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999999999999999888988887778899999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhccc
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVN 120 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~ 120 (988)
|+++|+.+.+.+.|+++.+.|+|++|++++++++++..+.+
T Consensus 253 g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~ 293 (295)
T 1yb4_A 253 ALNLPNTATCQELFNTCAANGGSQLDHSAMVQALELMANHK 293 (295)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHHHHTCC
T ss_pred CCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999998877654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=136.59 Aligned_cols=101 Identities=21% Similarity=0.261 Sum_probs=93.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHH------HHHHhhccCCchhhhccccccccCCCCc-chH-----HHHHHh
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVL------YDIISNAAGNSWIFKNYIPNLLRGDAKL-HFL-----NAFIQN 68 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~------~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l-----~l~~KD 68 (988)
++||++.+.++.+++|++.++++.|+|++.+ +++++.++++||..+ .++++++ |.| |.+ +++.||
T Consensus 182 l~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~-~~~~f~~~~~~~~~~~KD 258 (296)
T 3qha_A 182 LARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD--NMKDLEP-DNFLYQPFLHTRGLGEKD 258 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS--SCSCCCT-TSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh--chhhhhc-CCCCCchhhhhhHHHHHH
Confidence 5799999999999999999999999999999 999999999997554 8899988 988 998 999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCC
Q 001973 69 LGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHAND 104 (988)
Q Consensus 69 l~la~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~ 104 (988)
+++++++|++.|+++|+.+.+.+.|+++.+.||+++
T Consensus 259 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~ 294 (296)
T 3qha_A 259 LSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEK 294 (296)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCcccc
Confidence 999999999999999999999999999999999654
|
| >3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.9e-12 Score=139.28 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=55.1
Q ss_pred cccccH---HHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC
Q 001973 919 VRISST---KELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY 976 (988)
Q Consensus 919 ~~lv~~---~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~ 976 (988)
|++++. ++||++|++++|||||||++|+|+++|+++|||+++||||||++++..+|++
T Consensus 1 Mp~~~~~~~~~ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~ 61 (349)
T 3elf_A 1 MPIATPEVYAEMLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGS 61 (349)
T ss_dssp -CBCCHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHH
T ss_pred CceecHHHHHHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcC
Confidence 789999 9999999999999999999999999999999999999999999999999864
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-11 Score=133.47 Aligned_cols=115 Identities=23% Similarity=0.395 Sum_probs=104.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhcccc-------ccccCCCCc-chHHHHHHhHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIP-------NLLRGDAKL-HFLNAFIQNLGIA 72 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~-f~l~l~~KDl~la 72 (988)
++||++.+.++..+.|++.++++.|++++.+.+++..+.+.||++..+.+ .+..++|.+ |.++++.||++++
T Consensus 171 l~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~~~~~kd~~~~ 250 (296)
T 2gf2_A 171 ICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLA 250 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCchHHHHHHHHHH
Confidence 46899989999999999999999999999999999998888888765432 245678888 9999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHh
Q 001973 73 LDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWEN 115 (988)
Q Consensus 73 ~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~ 115 (988)
.++|++.|+++|+.+.+.+.|+++.++|+|++|++++++++++
T Consensus 251 ~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 293 (296)
T 2gf2_A 251 QDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLRE 293 (296)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSC
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998764
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-12 Score=135.10 Aligned_cols=64 Identities=31% Similarity=0.418 Sum_probs=58.2
Q ss_pred cccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHhhh
Q 001973 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTSSI 984 (988)
Q Consensus 921 lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~~~ 984 (988)
--.+++||++|++++|||||||++|+|+++|+++|||+++||||||++++..+|.|..++.+++
T Consensus 12 ~n~~~~ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~ 75 (306)
T 3pm6_A 12 SNRALPLLTFARTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAA 75 (306)
T ss_dssp TCSSHHHHHHHHHTTCCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHH
T ss_pred ccHHHHHHHHHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHH
Confidence 3467999999999999999999999999999999999999999999999999999876665543
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.6e-13 Score=147.15 Aligned_cols=139 Identities=21% Similarity=0.295 Sum_probs=107.7
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhC-CC-eEEEEeCChhHHHHHHhc-C--CcccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRS-NF-TVIGYDVYRPTLTKFQNV-G--GLIANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~-G~-~V~v~dr~~~~~~~l~~~-G--~~~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
...++|+|||+|.||..++.+|.+. |+ +|++|||++++.+++.+. + +..+++++++++++|+|++|+|.. +.
T Consensus 133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~ 209 (312)
T 2i99_A 133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EP 209 (312)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Cc
Confidence 3457999999999999999999886 76 899999999999998875 5 677889999999999999999963 33
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec----Ccc-cCCc---ccccCCCeEEEEeCCHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD----APV-SGGV---KRASMGELTIMAAGTEES 290 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld----apv-~g~~---~~a~~g~l~~~~gg~~~~ 290 (988)
++. . +.+++|++|+++++..|.. +++.+.+.+ ++..|+| +|+ .|.. ..+..+++..+++|+.+.
T Consensus 210 v~~---~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~--~g~~~vD~~~~a~~~~G~~~~~~~~~~g~L~~~v~G~~~~ 281 (312)
T 2i99_A 210 ILF---G--EWVKPGAHINAVGASRPDW-RELDDELMK--EAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPA 281 (312)
T ss_dssp CBC---G--GGSCTTCEEEECCCCSTTC-CSBCHHHHH--HSEEEESCHHHHHHHCHHHHTTTCCCCEEHHHHHHTSSCC
T ss_pred ccC---H--HHcCCCcEEEeCCCCCCCc-eeccHHHHh--cCEEEECCHHHHHhhcCCcccChhhccccHHHHhCCCCCC
Confidence 331 1 5688999999999999875 667666665 4678999 566 4443 334456677788887653
Q ss_pred HHH
Q 001973 291 LKS 293 (988)
Q Consensus 291 ~~~ 293 (988)
++.
T Consensus 282 ~~~ 284 (312)
T 2i99_A 282 HCE 284 (312)
T ss_dssp CTT
T ss_pred CCC
Confidence 333
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-11 Score=132.63 Aligned_cols=114 Identities=18% Similarity=0.346 Sum_probs=107.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
+++|.+.+.++..+.|++.++++.|++++.+.+++..+..+|+++..+.+.+++++|.| |+++.+.||++++++++++.
T Consensus 201 ~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~ 280 (316)
T 2uyy_A 201 LIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAV 280 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999998887788899999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHH
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWE 114 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~ 114 (988)
|+++|+.+.+.+.|+++.+.|+|++|+++++++++
T Consensus 281 gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~~ 315 (316)
T 2uyy_A 281 NHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYI 315 (316)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGTC
T ss_pred CCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 99999999999999999999999999999987653
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-11 Score=133.69 Aligned_cols=105 Identities=14% Similarity=0.181 Sum_probs=91.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++|||+++..+. ....+++++++++||+|++++|.+.+++.++. ++
T Consensus 122 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~ 194 (290)
T 3gvx_A 122 GKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPLTDKTRGMVN--SR 194 (290)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCCCTTTTTCBS--HH
T ss_pred cchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeeccccchhhhh--HH
Confidence 369999999999999999999999999999999765432 44567999999999999999998777777663 45
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.++.+++|.++||++++.+.....+.+.+.+.
T Consensus 195 ~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g 226 (290)
T 3gvx_A 195 LLANARKNLTIVNVARADVVSKPDMIGFLKER 226 (290)
T ss_dssp HHTTCCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred HHhhhhcCceEEEeehhcccCCcchhhhhhhc
Confidence 67889999999999999999999999999873
|
| >1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-11 Score=133.45 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhccc
Q 001973 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQ 975 (988)
Q Consensus 923 ~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~ 975 (988)
++++||++|++++||||||||+|+|+++|+++|||+++||||||+++++.+|+
T Consensus 16 ~~~~ll~~A~~~~yAVpAfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~ 68 (358)
T 1dos_A 16 DVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFI 68 (358)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHHh
Confidence 68999999999999999999999999999999999999999999999988876
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.8e-11 Score=130.48 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=71.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++|||+++. ..+.....++.+++++||+|++++|...+++.++. ++
T Consensus 171 gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~--~~ 243 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVD--AS 243 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TSCCEECSSHHHHHHTCSEEEECC----------C--HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----ccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhh--HH
Confidence 469999999999999999999999999999999765 23556678999999999999999998888888874 46
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.++.++++.++||++++.+.....+.+.+.+.
T Consensus 244 ~l~~mk~gailIN~aRG~vvde~aL~~aL~~g 275 (340)
T 4dgs_A 244 LLQALGPEGIVVNVARGNVVDEDALIEALKSG 275 (340)
T ss_dssp HHHHTTTTCEEEECSCC--------------C
T ss_pred HHhcCCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence 77889999999999999999999999988763
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-09 Score=125.82 Aligned_cols=197 Identities=17% Similarity=0.097 Sum_probs=145.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
+++|++.+++++.+.|...++++.|+|++.++++++.++.-++ ..+ .+.| |....+.||+.++++.|++.
T Consensus 217 l~~N~~~a~~ia~~nE~~~l~~~~GiD~~~v~~~~~~~~rig~-------~~l--~pg~G~gg~c~~KD~~~l~~~A~~~ 287 (446)
T 4a7p_A 217 YAANAFLAVKITFINEIADLCEQVGADVQEVSRGIGMDNRIGG-------KFL--HAGPGYGGSCFPKDTLALMKTAADN 287 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTC----------CC--CCCSCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCCC-------ccC--CCCCCcchhhHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999999987642111 111 1223 77889999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccc----
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLG---- 155 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G---- 155 (988)
|+++|+.+++.+..+..... +++.+.+..+.. .+..||+|+|+-
T Consensus 288 g~~~~l~~~~~~iN~~~~~~---------~~~~i~~~l~~~-----------------------~~~~~v~vlGlafK~~ 335 (446)
T 4a7p_A 288 ETPLRIVEATVQVNDARKRA---------MGRKVIKAMGGD-----------------------VRGKTVGILGLTFKPN 335 (446)
T ss_dssp TCCCHHHHHHHHHHHHHHHH---------HHHHHHHHTTSC-----------------------CTTCEEEEECCSSSTT
T ss_pred CCCCHHHHHHHHHHHHHHHH---------HHHHHHHHhccc-----------------------CCCCEEEEEEEEeCCC
Confidence 99999999999998865432 343333322210 012489999987
Q ss_pred ------hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh--cCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchh
Q 001973 156 ------AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN--VGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAV 227 (988)
Q Consensus 156 ------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~--~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~ 227 (988)
.-...++..|.+.|.+|.+||.... +...+ .++..++++.++++++|.+++++..+. .+..- .+.+.
T Consensus 336 ~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~--~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~-f~~~d--~~~~~ 410 (446)
T 4a7p_A 336 TDDMRDAPSLSIIAALQDAGATVKAYDPEGV--EQASKMLTDVEFVENPYAAADGADALVIVTEWDA-FRALD--LTRIK 410 (446)
T ss_dssp SCCCTTCSHHHHHHHHHHTSCEEEEECSSCH--HHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTT-TTSCC--HHHHH
T ss_pred CcccccChHHHHHHHHHHCCCEEEEECCCCC--HhHHHhcCCceEecChhHHhcCCCEEEEeeCCHH-hhcCC--HHHHH
Confidence 5678999999999999999998753 22222 267778899999999999999998765 22110 01222
Q ss_pred hhCCCCCEEEecCCCCH
Q 001973 228 SALSSGASIILSSTVSP 244 (988)
Q Consensus 228 ~~l~~g~ivId~st~~p 244 (988)
..+ ++.+|+|.-+...
T Consensus 411 ~~~-~~~~i~D~r~~~~ 426 (446)
T 4a7p_A 411 NSL-KSPVLVDLRNIYP 426 (446)
T ss_dssp TTB-SSCBEECSSCCSC
T ss_pred Hhc-CCCEEEECCCCCC
Confidence 333 3568999887754
|
| >3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-11 Score=132.00 Aligned_cols=53 Identities=26% Similarity=0.341 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhccc
Q 001973 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQ 975 (988)
Q Consensus 923 ~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~ 975 (988)
.|++||++|++++|||||||++|+|+++|+++|||+++||||||+++++.+|+
T Consensus 19 ~~~~ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~ 71 (357)
T 3qm3_A 19 ELNKIYDYAKAEGFAIPAVNVVGTDSINAVLEAAKKVNSPVIIQFSNGGAKFY 71 (357)
T ss_dssp GHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHHTSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhc
Confidence 68999999999999999999999999999999999999999999999988874
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-09 Score=124.71 Aligned_cols=197 Identities=12% Similarity=-0.006 Sum_probs=145.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc---chHHHHHHhHHHHHHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL---HFLNAFIQNLGIALDMAK 77 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~---f~l~l~~KDl~la~~~a~ 77 (988)
+++|++.+++++.+.|...++++.|+|++.+.++++.++ ++....|.| |....+.||++++++.|+
T Consensus 213 l~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~-----------rig~~~~~pg~G~gg~c~~KD~~~l~~~a~ 281 (450)
T 3gg2_A 213 YAANAMLATRISFMNDVANLCERVGADVSMVRLGIGSDS-----------RIGSKFLYPGCGYGGSCFPKDVKALIRTAE 281 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTST-----------TTCSSSCCCSSCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCC-----------CCCcccCCCCCCCCcccHHhhHHHHHHHHH
Confidence 479999999999999999999999999999999998763 233344454 668899999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccch-
Q 001973 78 TLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGA- 156 (988)
Q Consensus 78 ~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~- 156 (988)
+.|+++|+.+++++..+.... -+++.+.+..+.. .+..||+|+|+-.
T Consensus 282 ~~g~~~~l~~~~~~iN~~~~~---------~~~~~~~~~~~~~-----------------------~~~~~v~vlGlafK 329 (450)
T 3gg2_A 282 DNGYRMEVLEAVERVNEKQKS---------ILFDKFSTYYKGN-----------------------VQGRCVAIWGLSFK 329 (450)
T ss_dssp HTTCCCHHHHHHHHHHHHHTT---------HHHHHHHHHTTTC-----------------------CTTCEEEEECCSSS
T ss_pred HcCCCcHHHHHHHHHHHHHHH---------HHHHHHHHHhccc-----------------------CCCCEEEEEeeeeC
Confidence 999999999999999885443 2444443322210 0124899998853
Q ss_pred ---------HHHHHHHHHHhCCCeEEEEeCChhH-HHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 157 ---------MGFGMATHLLRSNFTVIGYDVYRPT-LTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 157 ---------mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
=...++..|.+.|.+|.+||..... ....-...+..++++.++++++|.+++++..+. .+..- .+.+
T Consensus 330 ~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~~-f~~~~--~~~~ 406 (450)
T 3gg2_A 330 PGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTEWKE-FRMPD--WSAL 406 (450)
T ss_dssp TTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECSCCGG-GSSCC--HHHH
T ss_pred CCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEccCCHH-HhhcC--HHHH
Confidence 4688999999999999999987532 222211236678899999999999999998865 22110 0123
Q ss_pred hhhCCCCCEEEecCCCCH
Q 001973 227 VSALSSGASIILSSTVSP 244 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p 244 (988)
...+ ++.+|+|.-+...
T Consensus 407 ~~~~-~~~~i~D~r~~~~ 423 (450)
T 3gg2_A 407 SQAM-AASLVIDGRNVYE 423 (450)
T ss_dssp HHHS-SSCEEEESSCCCC
T ss_pred HHhc-CCCEEEECCCCCC
Confidence 3333 3578999887653
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-11 Score=130.48 Aligned_cols=160 Identities=19% Similarity=0.203 Sum_probs=113.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeE-EEEeCChhHHHHHHhcCCcccCCHHHHh-ccCcEEEEEcCChHHHHHHHcccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTV-IGYDVYRPTLTKFQNVGGLIANSPAEAA-KDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~G~~~~~s~~e~~-~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
|||||||+|.||..++.+|.+.|++| .+||+++ +.+. .++++++++ .++|+|++|+|+....+.+.
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~---- 68 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAVKDYAE---- 68 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHHHHHHH----
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHHHHHHH----
Confidence 48999999999999999999999997 7999985 2211 578899988 69999999999875444432
Q ss_pred chhhhCCCCCEEEecCCCCHH---HHHHHHHHHHhcCCCce-EecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTVSPG---FVSQLERRLQFEGKDLK-LVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSA 300 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~---~~~~l~~~l~~~~~g~~-~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~ 300 (988)
..+..|+.+++.++..+. ..+++.+...+. |.. +++++++++...+..+.+ +++...+...++.++.
T Consensus 69 ---~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~--g~~~~i~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~ 139 (236)
T 2dc1_A 69 ---KILKAGIDLIVLSTGAFADRDFLSRVREVCRKT--GRRVYIASGAIGGLDAIFSASE----LIEEIVLTTRKNWRQF 139 (236)
T ss_dssp ---HHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHH--CCCEEECCTTCSCHHHHHHTGG----GEEEEEEEEEEEGGGT
T ss_pred ---HHHHCCCcEEEECcccCChHHHHHHHHHHHHhc--CCeEEecCccccChHHHHHhhc----cccEEEEEEEcChHHc
Confidence 345678999999887643 236777776653 455 689999999877666654 3333333333344666
Q ss_pred cCCeEEEEeCCcchH-HHHHHHHHHHHHH
Q 001973 301 LSEKLYVIKGGCGAG-SGVKMANQLLAGV 328 (988)
Q Consensus 301 ~g~~v~~~~g~~g~a-~~~Kl~~N~~~~~ 328 (988)
.+.++++ .|+.+.+ ..+|...|+....
T Consensus 140 ~~~~~~~-~G~~~~~~~~~~~~~n~~~~~ 167 (236)
T 2dc1_A 140 GRKGVIF-EGSASEAAQKFPKNLNVAATL 167 (236)
T ss_dssp TSCEEEE-EEEHHHHHHHSTTCCHHHHHH
T ss_pred CcceEEE-eccHHHHHHHCCchHHHHHHH
Confidence 7777777 4665443 4667777766543
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=130.28 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=98.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++|||++. .+...+.|+..++++++++++||+|++++|...+++.++. ++
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~--~~ 236 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIIT--VA 236 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBC--HH
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhC--HH
Confidence 46999999999999999999999999999999864 3556667888888999999999999999998877777663 45
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD 265 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld 265 (988)
.++.+++|.++||++++.+.....+.+.+.+.......+|
T Consensus 237 ~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lD 276 (352)
T 3gg9_A 237 DLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAID 276 (352)
T ss_dssp HHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEEC
T ss_pred HHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEec
Confidence 6788999999999999999888999999987432333444
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.3e-10 Score=126.34 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=93.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|+.|...|++|++|||++++.+.+.+.|+..+ ++.+++++||+|++++|.+..++.++. ++
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~--~~ 231 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCN--KD 231 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBS--HH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhC--HH
Confidence 469999999999999999999999999999999877776766677766 899999999999999998876666653 35
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+.+.++++.++|++|++.+.....+.+.+.+
T Consensus 232 ~~~~mk~gailIn~srg~~v~~~aL~~aL~~ 262 (330)
T 2gcg_A 232 FFQKMKETAVFINISRGDVVNQDDLYQALAS 262 (330)
T ss_dssp HHHHSCTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred HHhcCCCCcEEEECCCCcccCHHHHHHHHHc
Confidence 6678899999999999998888888888876
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-10 Score=128.79 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=97.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++|||++...+.+.+.|+...+++++++++||+|++++|....++.++. .+
T Consensus 164 gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~--~~ 241 (351)
T 3jtm_A 164 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFN--KE 241 (351)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBS--HH
T ss_pred CCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhc--HH
Confidence 4699999999999999999999999999999998776677777888888999999999999999998776777663 46
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.++.+++|.++||++.+.+.....+.+.+.+
T Consensus 242 ~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 272 (351)
T 3jtm_A 242 LIGKLKKGVLIVNNARGAIMERQAVVDAVES 272 (351)
T ss_dssp HHHHSCTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred HHhcCCCCCEEEECcCchhhCHHHHHHHHHh
Confidence 6788999999999999999999999999987
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=129.44 Aligned_cols=111 Identities=15% Similarity=0.187 Sum_probs=98.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-CCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHh
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAA-GNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKT 78 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~ 78 (988)
|+||++.++++++++|++.+++++|+|++ +++.+..++ +.+| ..+.+++++++|.+ |. +.||++++.++|++
T Consensus 196 l~~N~~~~~~~~~~~E~~~la~~~Gid~~-~~~~l~~~~~~~~~--~~~~~~~~~~~~~~g~~---~~KDl~~~~~~a~~ 269 (317)
T 4ezb_A 196 MIRSVMIKGVEALLIEALSSAERAGVTER-ILDSVQETFPGLDW--RDVADYYLSRTFEHGAR---RVTEMTEAAETIES 269 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCH--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcCccccH--HHhhhhhhcCCCCCCcc---hHHHHHHHHHHHHH
Confidence 58999999999999999999999999995 677777665 4455 66788999999998 87 49999999999999
Q ss_pred cCCCCcHHHHHHHH----HHHHhhCcCC-CCCchhHHHHHHhhh
Q 001973 79 LAFPLPLLAVAHQQ----LILGLSHAHA-NDDNPPLVKVWENVL 117 (988)
Q Consensus 79 ~g~~~p~~~~~~~~----~~~a~~~G~g-~~D~~~~~~~~~~~~ 117 (988)
.|+++|+++.+.+. |+++.+.|++ ++||+++++.+..+.
T Consensus 270 ~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~ 313 (317)
T 4ezb_A 270 FGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARRL 313 (317)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHHHHHHHC
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhhc
Confidence 99999999999999 8888899997 999999999887543
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.4e-11 Score=131.97 Aligned_cols=117 Identities=12% Similarity=0.100 Sum_probs=93.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++|||++...+.+. +.....++++++++||+|++++|...+++.++. .+
T Consensus 140 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~ 215 (324)
T 3hg7_A 140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD--QVYQLPALNKMLAQADVIVSVLPATRETHHLFT--AS 215 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS--EEECGGGHHHHHHTCSEEEECCCCCSSSTTSBC--TT
T ss_pred cceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh--cccccCCHHHHHhhCCEEEEeCCCCHHHHHHhH--HH
Confidence 36999999999999999999999999999999875432211 112356899999999999999998777777764 45
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
.+..+++|.++||++++.+.....+.+.+.+.......+|.
T Consensus 216 ~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV 256 (324)
T 3hg7_A 216 RFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDV 256 (324)
T ss_dssp TTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESC
T ss_pred HHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEecc
Confidence 67789999999999999999999999999874323344553
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=129.45 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=93.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|.+|||++...+... |...++++++++++||+|++++|...+++.++. ++
T Consensus 173 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~--~~ 248 (345)
T 4g2n_A 173 GRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLD--HD 248 (345)
T ss_dssp TCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--TCEECSSHHHHHHTCSEEEECSCCCGGGTTCBC--HH
T ss_pred CCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--CCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhC--HH
Confidence 46999999999999999999999999999999875543322 777778999999999999999998777777663 46
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.++.+++|.++||++.+.......+.+.+.+
T Consensus 249 ~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 279 (345)
T 4g2n_A 249 RIAKIPEGAVVINISRGDLINDDALIEALRS 279 (345)
T ss_dssp HHHHSCTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred HHhhCCCCcEEEECCCCchhCHHHHHHHHHh
Confidence 6788999999999999999989999999977
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.8e-11 Score=130.19 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=90.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|+.|...|++|++|||+++.. .|....+++.+++++||+|++++|....++.++. ++
T Consensus 164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~-----~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~--~~ 236 (333)
T 3ba1_A 164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN-----TNYTYYGSVVELASNSDILVVACPLTPETTHIIN--RE 236 (333)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTT-----CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBC--HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhc-----cCceecCCHHHHHhcCCEEEEecCCChHHHHHhh--HH
Confidence 3689999999999999999999999999999998753 2666677899999999999999998776777663 34
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
..+.++++.++|++|++.+.....+.+.+.+.
T Consensus 237 ~l~~mk~gailIn~srG~~vd~~aL~~aL~~g 268 (333)
T 3ba1_A 237 VIDALGPKGVLINIGRGPHVDEPELVSALVEG 268 (333)
T ss_dssp HHHHHCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHhcCCCCCEEEECCCCchhCHHHHHHHHHcC
Confidence 66778899999999999998888999988773
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-10 Score=126.81 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=93.0
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..++|||||+|.||..+|++|...|++|++||++++.. .....|+..+.++.+++++||+|++++|...+++.++. +
T Consensus 167 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~ 243 (347)
T 1mx3_A 167 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN--D 243 (347)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS--H
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhH--H
Confidence 34699999999999999999999999999999987642 22345777777899999999999999998877777663 3
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+.++.++++.++||++++.+...+.+.+.+.+
T Consensus 244 ~~l~~mk~gailIN~arg~~vd~~aL~~aL~~ 275 (347)
T 1mx3_A 244 FTVKQMRQGAFLVNTARGGLVDEKALAQALKE 275 (347)
T ss_dssp HHHTTSCTTEEEEECSCTTSBCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEECCCChHHhHHHHHHHHHh
Confidence 56678899999999999999999999999987
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-10 Score=129.38 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=93.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++|||++.+.+.....|+... ++.+++++||+|++++|....++.++. ++
T Consensus 145 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~ 221 (330)
T 4e5n_A 145 NATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVN--AE 221 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCSTTTTTCBC--HH
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCCCHHHHHHhC--HH
Confidence 469999999999999999999999999999999855555555676554 899999999999999998777776663 46
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.++.+++|.++||++++.+.....+.+.+.+.
T Consensus 222 ~l~~mk~gailIN~arg~~vd~~aL~~aL~~g 253 (330)
T 4e5n_A 222 LLALVRPGALLVNPCRGSVVDEAAVLAALERG 253 (330)
T ss_dssp HHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHhhCCCCcEEEECCCCchhCHHHHHHHHHhC
Confidence 77889999999999999999999999999873
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.4e-11 Score=130.46 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=90.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++|||+++..+.+.. .....++.+++++||+|++++|...+++.++. ++
T Consensus 137 gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~--~~ 212 (324)
T 3evt_A 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPTTHHLFS--TE 212 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGGGTTCBS--HH
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchHHHHhcC--HH
Confidence 369999999999999999999999999999998765432211 12346789999999999999998877777764 46
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.+..+++|.++||++++.+.....+.+.+.+.
T Consensus 213 ~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g 244 (324)
T 3evt_A 213 LFQQTKQQPMLINIGRGPAVDTTALMTALDHH 244 (324)
T ss_dssp HHHTCCSCCEEEECSCGGGBCHHHHHHHHHTT
T ss_pred HHhcCCCCCEEEEcCCChhhhHHHHHHHHHhC
Confidence 67889999999999999999999999999763
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.5e-10 Score=123.03 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=92.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++||+++++ +...+.|+... ++.+++++||+|++++|...+++.++. ++
T Consensus 142 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDvV~l~~p~~~~t~~li~--~~ 217 (307)
T 1wwk_A 142 GKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLIN--EE 217 (307)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBC--HH
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCcccc-CHHHHHhhCCEEEEecCCChHHhhhcC--HH
Confidence 469999999999999999999999999999999877 45566677654 899999999999999998776776653 35
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
..+.+++|.++||++++.+.....+.+.+.+.
T Consensus 218 ~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g 249 (307)
T 1wwk_A 218 RLKLMKKTAILINTSRGPVVDTNALVKALKEG 249 (307)
T ss_dssp HHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 67789999999999999888888888888763
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-10 Score=127.41 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=91.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++||+++++. ...+.|+.. .++.++++++|+|++++|...+++.++. +.
T Consensus 142 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~--~~ 217 (313)
T 2ekl_A 142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVSKDAKPIID--YP 217 (313)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBC--HH
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCChHHHHhhC--HH
Confidence 3699999999999999999999999999999998774 355667765 4899999999999999998776666553 34
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
..+.+++|.++||++++.+.....+.+.+.+
T Consensus 218 ~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~ 248 (313)
T 2ekl_A 218 QFELMKDNVIIVNTSRAVAVNGKALLDYIKK 248 (313)
T ss_dssp HHHHSCTTEEEEESSCGGGBCHHHHHHHHHT
T ss_pred HHhcCCCCCEEEECCCCcccCHHHHHHHHHc
Confidence 5678899999999999988888889998876
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-10 Score=126.91 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=94.7
Q ss_pred CCeEEEEccchHHHHHHHHHH-hCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLL-RSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|||||+|.||..+|+.|. ..|++|++|||++++.+...+.|+..++++.+++++||+|++++|...+++.++. .
T Consensus 163 g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~--~ 240 (348)
T 2w2k_A 163 GHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLID--E 240 (348)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBC--H
T ss_pred CCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhh--H
Confidence 469999999999999999999 9999999999998776666666887777899999999999999999877777663 3
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+..+.++++.++||++++.+.....+.+.+.+
T Consensus 241 ~~l~~mk~gailin~srg~~vd~~aL~~aL~~ 272 (348)
T 2w2k_A 241 AFFAAMKPGSRIVNTARGPVISQDALIAALKS 272 (348)
T ss_dssp HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred HHHhcCCCCCEEEECCCCchhCHHHHHHHHHh
Confidence 46678899999999999998888889888876
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-10 Score=126.59 Aligned_cols=108 Identities=10% Similarity=0.123 Sum_probs=91.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeC-ChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDV-YRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|||||+|.||..+|++|...|++|++||+ +++. ....+.|+...+++.+++++||+|++++|...+++.++. +
T Consensus 146 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~--~ 222 (320)
T 1gdh_A 146 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN--K 222 (320)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBS--H
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcC--H
Confidence 46999999999999999999999999999999 8776 344556887777899999999999999998776666653 3
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
...+.++++.++||++++.+.....+.+.+.+
T Consensus 223 ~~l~~mk~gailIn~arg~~vd~~aL~~aL~~ 254 (320)
T 1gdh_A 223 ATIKSLPQGAIVVNTARGDLVDNELVVAALEA 254 (320)
T ss_dssp HHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred HHHhhCCCCcEEEECCCCcccCHHHHHHHHHh
Confidence 46678899999999999888777888888876
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5e-10 Score=125.02 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=92.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|+.|...|++|++|||++++ +...+.|+.. .++.+++++||+|++++|.+..++.++. ++
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~--~~ 225 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLIN--EE 225 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBC--HH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhhC--HH
Confidence 469999999999999999999999999999999887 5555567765 5899999999999999999887766663 35
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+.+.++++.++|++|++.+.....+.+.+.+
T Consensus 226 ~~~~mk~~ailIn~srg~~v~~~aL~~aL~~ 256 (334)
T 2dbq_A 226 RLKLMKKTAILINIARGKVVDTNALVKALKE 256 (334)
T ss_dssp HHHHSCTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred HHhcCCCCcEEEECCCCcccCHHHHHHHHHh
Confidence 6778899999999999998888888888876
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-10 Score=125.73 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=92.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++||++++. +.....|+.. .++++++++||+|++++|...+++.++. ++
T Consensus 165 g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~--~~ 240 (335)
T 2g76_A 165 GKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLN--DN 240 (335)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBC--HH
T ss_pred cCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHHHHhhC--HH
Confidence 469999999999999999999999999999998776 3455667764 4899999999999999999887777763 35
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.++.++++.++||++++.+.....+.+.+.+
T Consensus 241 ~l~~mk~gailIN~arg~vvd~~aL~~aL~~ 271 (335)
T 2g76_A 241 TFAQCKKGVRVVNCARGGIVDEGALLRALQS 271 (335)
T ss_dssp HHTTSCTTEEEEECSCTTSBCHHHHHHHHHH
T ss_pred HHhhCCCCcEEEECCCccccCHHHHHHHHHh
Confidence 6788999999999999988888888888876
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.9e-09 Score=119.68 Aligned_cols=202 Identities=13% Similarity=0.101 Sum_probs=126.5
Q ss_pred CeEEEEccchHHHHHHHHHHhC------CCeEEEEeCCh-hHHHHHHhcCCcc----cCCHHHHhccCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS------NFTVIGYDVYR-PTLTKFQNVGGLI----ANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~------G~~V~v~dr~~-~~~~~l~~~G~~~----~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
+||||||+|+||.++|.+|.+. |++|++++++. ...+...+.|+.. +.++.++++++|+||+++|+...
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~ 134 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHHH
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHHH
Confidence 6999999999999999999999 99998777654 4456666778875 36899999999999999998765
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec-CcccCCcc----cc-c-----CCCe-EEE
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD-APVSGGVK----RA-S-----MGEL-TIM 283 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld-apv~g~~~----~a-~-----~g~l-~~~ 283 (988)
..++ +++.+++++|++|+.+........ .+.......++.++- +|-..+.. .. . .|.- .+.
T Consensus 135 -~eVl---~eI~p~LK~GaILs~AaGf~I~~l---e~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liA 207 (525)
T 3fr7_A 135 -ADNY---EKIFSHMKPNSILGLSHGFLLGHL---QSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 207 (525)
T ss_dssp -HHHH---HHHHHHSCTTCEEEESSSHHHHHH---HHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEE
T ss_pred -HHHH---HHHHHhcCCCCeEEEeCCCCHHHH---hhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCccEEEE
Confidence 4576 478999999999877766432221 110001113444442 34322221 00 1 3443 233
Q ss_pred EeCC--HHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Q 001973 284 AAGT--EESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMA-N-QLLAGVHIASAAEAMAFGARLGLNTRVLFNIITD 356 (988)
Q Consensus 284 ~gg~--~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~-~-N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~ 356 (988)
+..+ .+..+.+..+++.+|...+ +....-.-.-..+. . ..+.+...+++--++..+.+.|++++..+....+
T Consensus 208 v~qd~tgea~e~alala~aiG~~~v-ieTtf~eE~e~DLfgeqtvLsG~~pAlieA~~d~lVe~G~~pe~Ay~~~~q 283 (525)
T 3fr7_A 208 VHQDVDGRATDVALGWSVALGSPFT-FATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVE 283 (525)
T ss_dssp EEECSSSCHHHHHHHHHHHTTCSEE-EECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCee-eeeeeeeehhHhhhhhHhhhcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3333 4788999999999998642 22222211111121 1 1222333333333445678899999988776543
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-10 Score=124.87 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=89.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++|||+++ +. +.....++.+++++||+|++++|...+++.++. ++
T Consensus 124 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~--~~ 195 (303)
T 1qp8_A 124 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKHTRGLVK--YQ 195 (303)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC--HH
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhC--HH
Confidence 36999999999999999999999999999999876 21 444567899999999999999999877777763 35
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
..+.+++|.++||+|++.+.....+.+.+.+.
T Consensus 196 ~l~~mk~gailin~srg~~vd~~aL~~aL~~g 227 (303)
T 1qp8_A 196 HLALMAEDAVFVNVGRAEVLDRDGVLRILKER 227 (303)
T ss_dssp HHTTSCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred HHhhCCCCCEEEECCCCcccCHHHHHHHHHhC
Confidence 77889999999999999888888898888763
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.97 E-value=9.3e-11 Score=129.25 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=88.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||+.+|++|...|++|++|||+++..+.+... ....++++++++||+|++++|...+++.++. ++
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~t~~li~--~~ 214 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQTVGIIN--SE 214 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGGGTTCBS--HH
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchhhhhhcc--HH
Confidence 4699999999999999999999999999999997653221111 1125788999999999999998877777763 45
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.++.+++|.++||++.+.......+.+.+.+
T Consensus 215 ~l~~mk~gailIN~aRG~~vd~~aL~~aL~~ 245 (315)
T 3pp8_A 215 LLDQLPDGAYVLNLARGVHVQEADLLAALDS 245 (315)
T ss_dssp HHTTSCTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred HHhhCCCCCEEEECCCChhhhHHHHHHHHHh
Confidence 6788999999999999999999999999977
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.2e-10 Score=124.39 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=93.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
++|||||+|.||..+|++|...|++|++|||+++.. .+.+... .++++++++||+|++++|....++.++. .+.
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~--~~~ 222 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLTY-TDFDTVLKEADIVSLHTPLFPSTENMIG--EKQ 222 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBC--HHH
T ss_pred CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhccccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhh--HHH
Confidence 599999999999999999999999999999997651 1223443 3899999999999999998777777663 456
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
++.+++|.++||++++.+.....+.+.+.+.......+|.
T Consensus 223 l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV 262 (343)
T 2yq5_A 223 LKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDT 262 (343)
T ss_dssp HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESC
T ss_pred HhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecc
Confidence 7889999999999999999999999999874333344553
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.5e-10 Score=123.93 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=91.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++||+++. .+.....|+.. .++.+++++||+|++++|...+++.++. .+
T Consensus 176 gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~--~~ 251 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLP-RSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFLG--AE 251 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSC-HHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC---CCC--HH
T ss_pred CCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCC-HHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhcC--HH
Confidence 36999999999999999999999999999999863 34455667764 5899999999999999999888888774 46
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.++.+++|.++||++.+.+.....+.+.+.+.
T Consensus 252 ~l~~mk~gailIN~aRG~~vde~aL~~aL~~g 283 (365)
T 4hy3_A 252 AFSSMRRGAAFILLSRADVVDFDALMAAVSSG 283 (365)
T ss_dssp HHHTSCTTCEEEECSCGGGSCHHHHHHHHHTT
T ss_pred HHhcCCCCcEEEECcCCchhCHHHHHHHHHcC
Confidence 77889999999999999999999999999873
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.95 E-value=8.3e-10 Score=124.80 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=94.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++||+++...+...+.|+....++++++++||+|++++|...+++.++. +.
T Consensus 191 gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~--~~ 268 (393)
T 2nac_A 191 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIN--DE 268 (393)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBS--HH
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhh--HH
Confidence 4699999999999999999999999999999987666656666887777899999999999999998776776663 35
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.++.++++.++||++++.+.....+.+.+.+
T Consensus 269 ~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 299 (393)
T 2nac_A 269 TLKLFKRGAYIVNTARGKLCDRDAVARALES 299 (393)
T ss_dssp HHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred HHhhCCCCCEEEECCCchHhhHHHHHHHHHc
Confidence 6678899999999999988888889998876
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.95 E-value=5.5e-10 Score=125.76 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=95.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCe-EEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFT-VIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|||||+|.||..+|++|...|++ |++|||++...+...+.|+...+++.+++++||+|++++|....++.++. +
T Consensus 164 g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~ 241 (364)
T 2j6i_A 164 GKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLIN--K 241 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBC--H
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhC--H
Confidence 46999999999999999999999997 99999998766666677877777899999999999999999877777663 3
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
..++.++++.++||++++.+.....+.+.+.+.
T Consensus 242 ~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g 274 (364)
T 2j6i_A 242 ELLSKFKKGAWLVNTARGAICVAEDVAAALESG 274 (364)
T ss_dssp HHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HHHhhCCCCCEEEECCCCchhCHHHHHHHHHcC
Confidence 567789999999999999988888999999873
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=7.4e-10 Score=123.45 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=90.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
++|||||+|.||..+|++|...|++|++||+++++. +.+ ++...+++.+++++||+|++++|...+++.++. +..
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~--~~~ 221 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMIN--DES 221 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBS--HHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHh--HHH
Confidence 589999999999999999999999999999998764 222 355556899999999999999998877777663 346
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.+.++++.++|+++++.+.....+.+.+.+.
T Consensus 222 l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g 252 (333)
T 1j4a_A 222 IAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 252 (333)
T ss_dssp HHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 6789999999999999998889999999873
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.5e-10 Score=122.56 Aligned_cols=106 Identities=11% Similarity=0.144 Sum_probs=89.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|+.|...|++|++|||+++. +...+.|+... ++.+++++||+|++++|....++.++. +.
T Consensus 146 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~--~~ 221 (333)
T 2d0i_A 146 GKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIIN--EE 221 (333)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSBC--HH
T ss_pred cCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChHHHHHhC--HH
Confidence 469999999999999999999999999999999876 44445576654 888999999999999999876777763 34
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
..+.++++ ++|++|++.+.....+.+.+.+
T Consensus 222 ~~~~mk~g-ilin~srg~~vd~~aL~~aL~~ 251 (333)
T 2d0i_A 222 RVKKLEGK-YLVNIGRGALVDEKAVTEAIKQ 251 (333)
T ss_dssp HHHHTBTC-EEEECSCGGGBCHHHHHHHHHT
T ss_pred HHhhCCCC-EEEECCCCcccCHHHHHHHHHc
Confidence 56778899 9999999988888888888876
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-08 Score=124.85 Aligned_cols=187 Identities=13% Similarity=0.151 Sum_probs=131.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc----------------------CCcccCCHHHHhccC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV----------------------GGLIANSPAEAAKDV 203 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----------------------G~~~~~s~~e~~~~a 203 (988)
..||||||.|.||..||..++.+|++|+++|++++..+...+. .+..+++.. .+++|
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~a 394 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELSTV 394 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGG-GGGSC
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHH-HHhhC
Confidence 3699999999999999999999999999999999876543221 112344554 47899
Q ss_pred cEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCCCeE
Q 001973 204 GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMGELT 281 (988)
Q Consensus 204 DvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g~l~ 281 (988)
|+||-+|+..-+++.-++ .++-+.+++++|+...|+..|-+. +++.+. ++..|.||.+.| ..-.++
T Consensus 395 DlVIEAV~E~l~iK~~vf--~~le~~~~~~aIlASNTSsl~i~~--ia~~~~~p~r~ig~HFfnP~--------~~m~LV 462 (742)
T 3zwc_A 395 DLVVEAVFEDMNLKKKVF--AELSALCKPGAFLCTNTSALNVDD--IASSTDRPQLVIGTHFFSPA--------HVMRLL 462 (742)
T ss_dssp SEEEECCCSCHHHHHHHH--HHHHHHSCTTCEEEECCSSSCHHH--HHTTSSCGGGEEEEECCSST--------TTCCEE
T ss_pred CEEEEeccccHHHHHHHH--HHHhhcCCCCceEEecCCcCChHH--HHhhcCCccccccccccCCC--------CCCceE
Confidence 999999999988876655 677888899998887666555443 333221 222345655432 112234
Q ss_pred EEEe---CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001973 282 IMAA---GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIIT 355 (988)
Q Consensus 282 ~~~g---g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~ 355 (988)
-++. .+++.++.+..+.+.+|+..+++.+.+| ++.|-+ ...+++|++.+.+. |.+++++.+++.
T Consensus 463 Evi~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~pG------Fi~NRi---~~~~~~ea~~l~~e-G~~~~~id~a~~ 529 (742)
T 3zwc_A 463 EVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYG------FVGNRM---LAPYYNQGFFLLEE-GSKPEDVDGVLE 529 (742)
T ss_dssp EEEECSSCCHHHHHHHHHHHHHTTCEEEECCCSTT------TTHHHH---HHHHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHhCCCCcccCCCCC------ccHHHH---hhHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 3333 4789999999999999999877433344 344433 34568899988775 899999888765
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=128.66 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=91.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++||+++.. +...+.|+..+ ++.+++++||+|++|+|....++.++. ++
T Consensus 142 g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~--~~ 217 (529)
T 1ygy_A 142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLID--KE 217 (529)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBC--HH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHhC--HH
Confidence 469999999999999999999999999999998743 44555687765 899999999999999999866777763 23
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+.+.++++.++||++++.+.....+.+.+.+
T Consensus 218 ~~~~~k~g~ilin~arg~iv~~~aL~~al~~ 248 (529)
T 1ygy_A 218 ALAKTKPGVIIVNAARGGLVDEAALADAITG 248 (529)
T ss_dssp HHTTSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred HHhCCCCCCEEEECCCCchhhHHHHHHHHHc
Confidence 6778999999999999999888888888876
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.6e-10 Score=126.07 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=90.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|+++...|++|++||+++... ..++....++++++++||+|++++|...+++.++. ++
T Consensus 145 gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~--~~ 218 (404)
T 1sc6_A 145 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMG--AK 218 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBC--HH
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhh--HH
Confidence 4699999999999999999999999999999976531 12355677999999999999999999887877763 45
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.++.+++|.++||+|++.+.....+.+.+.+
T Consensus 219 ~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~ 249 (404)
T 1sc6_A 219 EISLMKPGSLLINASRGTVVDIPALADALAS 249 (404)
T ss_dssp HHHHSCTTEEEEECSCSSSBCHHHHHHHHHT
T ss_pred HHhhcCCCeEEEECCCChHHhHHHHHHHHHc
Confidence 6788999999999999999888899998876
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.6e-10 Score=123.12 Aligned_cols=99 Identities=9% Similarity=0.020 Sum_probs=91.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
++||+++++++.+++|++.++++.|+|+ .++++++.+. .++.++.+.+++++++|.| |++ .||++++++++++.
T Consensus 194 l~~n~~~~~~~~~~~Ea~~la~~~Gld~-~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~---~KDl~~~~~~a~~~ 268 (312)
T 3qsg_A 194 MCRSAVLKGLEALFLEALAAAEKMGLAD-RVLASLDASF-PEHHLRDLALYLVERNLEHADRR---AHELGEVAATLCSV 268 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHS-GGGTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHhcC-CchhHHHhhhHhhcCCCCcccch---HHHHHHHHHHHHHc
Confidence 5899999999999999999999999999 5889998887 4677788899999999999 875 79999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCC
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHAND 104 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~ 104 (988)
|+++|+.+.+.+.|+++.+.|++++
T Consensus 269 g~~~pl~~~~~~~~~~~~~~g~~~~ 293 (312)
T 3qsg_A 269 GVEPLVAEAGYRRLTRVAQVRAALK 293 (312)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCcHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999988763
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-09 Score=119.36 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=86.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|++|...|++|++|||++++.. + ...++.+++++||+|++++|....++.++. ++
T Consensus 144 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~--~~ 214 (311)
T 2cuk_A 144 GLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPETHRLLN--RE 214 (311)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBC--HH
T ss_pred CCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcC--HH
Confidence 46999999999999999999999999999999986543 2 256899999999999999999876777662 24
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHH
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQ 255 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~ 255 (988)
..+.++++.++||++++.+.....+.+.+.
T Consensus 215 ~l~~mk~ga~lin~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 215 RLFAMKRGAILLNTARGALVDTEALVEALR 244 (311)
T ss_dssp HHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred HHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence 667889999999999998888788888876
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-09 Score=123.57 Aligned_cols=105 Identities=20% Similarity=0.159 Sum_probs=86.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.||..+|+++...|++|++||+++... ..+.....++++++++||+|++++|...+++.++. ++
T Consensus 156 gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~--~~ 229 (416)
T 3k5p_A 156 GKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLIT--EA 229 (416)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----BTTBEECSSHHHHHHHCSEEEECCCC-----CCBC--HH
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----ccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcC--HH
Confidence 3699999999999999999999999999999975421 12445578999999999999999999888887763 45
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..+++|.++||+|++.+.....+.+.+.+
T Consensus 230 ~l~~mk~gailIN~aRG~vvd~~aL~~aL~~ 260 (416)
T 3k5p_A 230 KLRKMKKGAFLINNARGSDVDLEALAKVLQE 260 (416)
T ss_dssp HHHHSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred HHhhCCCCcEEEECCCChhhhHHHHHHHHHc
Confidence 6788999999999999999999999999976
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.8e-08 Score=114.21 Aligned_cols=198 Identities=12% Similarity=0.018 Sum_probs=142.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-c--hHHHHHHhHHHHHHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-H--FLNAFIQNLGIALDMAK 77 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f--~l~l~~KDl~la~~~a~ 77 (988)
|+||++.+++++.+.|++.++++.|+|++.++++++..+ ++ +|..+.|.| | ....+.||+.++++.|+
T Consensus 236 l~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~----~~-----ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~ 306 (478)
T 3g79_A 236 TAENTFRDLQIAAINQLALYCEAMGINVYDVRTGVDSLK----GE-----GITRAVLWPGAGVGGHCLTKDTYHLERGVK 306 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSC----CS-----SSCCCCCCCCSCCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCc----hh-----hhccccCCCCCCcchhhHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999998653 11 455567777 4 46789999999999999
Q ss_pred hcCCC-------CcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEE
Q 001973 78 TLAFP-------LPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVG 150 (988)
Q Consensus 78 ~~g~~-------~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIg 150 (988)
+.|++ +++..++.+.=+.... -+++.+.+..+.. .+ ..+..||+
T Consensus 307 ~~g~~~~~~~~~~~li~~~~~iN~~~~~---------~~~~~i~~~l~~~-----~~---------------~~~~~~v~ 357 (478)
T 3g79_A 307 IGRGELDYPEGADSIYVLARKVNDFMPA---------HMYNLTVAALERL-----GK---------------KMDGSKVA 357 (478)
T ss_dssp TSSCCCCCCSSCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHTT-----TC---------------CSTTCEEE
T ss_pred HcCCCcccccchhHHHHHHHHHHHHHHH---------HHHHHHHHHHhhc-----cc---------------CCCCCEEE
Confidence 99987 8888888877554332 1333222211100 00 00124899
Q ss_pred EEccch----------HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 151 FIGLGA----------MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 151 iIG~G~----------mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
|+|+-. =...++..|.+.|.+|.+||..... + .+...+.++.++++++|.|++++..+. .+..-
T Consensus 358 vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~---~--~~~~~~~~~~~~~~~ad~vvi~t~~~~-f~~~d 431 (478)
T 3g79_A 358 MLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN---Y--PGVEISDNLEEVVRNADAIVVLAGHSA-YSSLK 431 (478)
T ss_dssp EECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC---B--TTBCEESCHHHHHTTCSEEEECSCCHH-HHSCC
T ss_pred EEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc---c--cCcceecCHHHHHhcCCEEEEecCCHH-HHhhh
Confidence 998753 3688999999999999999987552 1 123457889999999999999999866 33211
Q ss_pred ccccchhhhCC-CCCEEEecCCCCH
Q 001973 221 YGDLGAVSALS-SGASIILSSTVSP 244 (988)
Q Consensus 221 ~~~~~i~~~l~-~g~ivId~st~~p 244 (988)
.+.+...++ +..+|+|.-+...
T Consensus 432 --~~~~~~~~~~~~~~i~D~rn~~~ 454 (478)
T 3g79_A 432 --ADWAKKVSAKANPVIIDGRNVIE 454 (478)
T ss_dssp --HHHHHHHHCCSSCEEEESSSCSC
T ss_pred --HHHHHHHhccCCCEEEECCCCCC
Confidence 023334444 3789999887754
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-09 Score=120.75 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=88.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHH----HHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQ----AESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~----~~~vl~~ 222 (988)
++|||||+|.||..+|++|...|++|.+||++.+... +.....++++++++||+|++++|...+ ++.++.
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~- 193 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-----DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLAD- 193 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-----CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBC-
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-----cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcC-
Confidence 5999999999999999999999999999998644321 233467899999999999999998776 666663
Q ss_pred ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 223 DLGAVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.+.+..+++|.++||++.+.+.....+.+.+.+.
T Consensus 194 -~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g 227 (381)
T 3oet_A 194 -ETLIRRLKPGAILINACRGPVVDNAALLARLNAG 227 (381)
T ss_dssp -HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred -HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 4567889999999999999999999999999873
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-09 Score=120.79 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=88.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
++|||||+|.||..+|++|...|++|++|||++++. + +.++. ..++.+++++||+|++++|....++.++. ++.
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~--~~~ 220 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDYCT-QVSLDEVLEKSDIITIHAPYIKENGAVVT--RDF 220 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTTCE-ECCHHHHHHHCSEEEECCCCCTTTCCSBC--HHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhccc-cCCHHHHHhhCCEEEEecCCchHHHHHhC--HHH
Confidence 589999999999999999999999999999987653 2 22333 34899999999999999998776666653 356
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.+.+++|.++||+|++.+.....+.+.+.+.
T Consensus 221 l~~mk~ga~lin~srg~~vd~~aL~~aL~~g 251 (331)
T 1xdw_A 221 LKKMKDGAILVNCARGQLVDTEAVIEAVESG 251 (331)
T ss_dssp HHTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred HhhCCCCcEEEECCCcccccHHHHHHHHHhC
Confidence 7789999999999999998889999999873
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.2e-09 Score=119.55 Aligned_cols=104 Identities=19% Similarity=0.131 Sum_probs=88.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
++|||||+|.||..+|++|...|++|++||++++.. + ..++. ..++.+++++||+|++++|...+++.++. ++.
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~P~~~~t~~li~--~~~ 219 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIIN--EAA 219 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBC--HHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhccc-cCCHHHHHhcCCEEEEcCCCchhHHHHhC--HHH
Confidence 589999999999999999999999999999987643 1 22333 34899999999999999999887777663 456
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
++.+++|.++||++++.+.....+.+.+.+
T Consensus 220 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~ 249 (333)
T 1dxy_A 220 FNLMKPGAIVINTARPNLIDTQAMLSNLKS 249 (333)
T ss_dssp HHHSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred HhhCCCCcEEEECCCCcccCHHHHHHHHHh
Confidence 788999999999999999888999999886
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.4e-09 Score=118.22 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=91.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHH----HHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQ----AESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~----~~~vl~~ 222 (988)
++|||||+|.||..+|++|...|++|++||++++.. ..|.. ..++++++++||+|++++|...+ ++.++.
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~- 190 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPDGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLD- 190 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STTSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBC-
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccCcc-cCCHHHHHHhCCEEEEeccCccccccchhhhcC-
Confidence 599999999999999999999999999999876542 23433 46899999999999999998776 666653
Q ss_pred ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 223 DLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
++.++.+++|.++||+|++.+.....+.+.+.+.......+|.
T Consensus 191 -~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV 233 (380)
T 2o4c_A 191 -EPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDV 233 (380)
T ss_dssp -HHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESC
T ss_pred -HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeee
Confidence 4567889999999999999998889999998763222334553
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-07 Score=108.27 Aligned_cols=197 Identities=14% Similarity=0.062 Sum_probs=139.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-ch--HHHHHHhHHHHHHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HF--LNAFIQNLGIALDMAK 77 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~--l~l~~KDl~la~~~a~ 77 (988)
+++|.+.++++..+.|+..++++.|+|++.+.+.+.. .+++....|.| |. ...+.||++++.+.|+
T Consensus 223 l~~N~~~a~~ia~~nE~~~la~~~Gid~~~v~~~i~~-----------~~rig~~~~~pG~g~gg~c~~kD~~~l~~~A~ 291 (478)
T 2y0c_A 223 YAANAMLATRISFMNELANLADRFGADIEAVRRGIGS-----------DPRIGYHFLYAGCGYGGSCFPKDVEALIRTAD 291 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHT-----------STTTCSTTCCCSSCCCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhc-----------CCccCcccCCCCcccccCcCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999988862 13344445566 43 3457999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccch-
Q 001973 78 TLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGA- 156 (988)
Q Consensus 78 ~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~- 156 (988)
+.|+++|+.+++.+.++.... -+++.+.+..+.. .+..+|+|+|+-.
T Consensus 292 ~~gv~~pl~~~v~~in~~~~~---------~~~~~~~~~~~~~-----------------------~~~~~v~vlGlafK 339 (478)
T 2y0c_A 292 EHGQSLQILKAVSSVNATQKR---------VLADKIVARFGED-----------------------LTGRTFAIWGLAFK 339 (478)
T ss_dssp HTTCCCHHHHHHHHHHHHHTT---------HHHHHHHHHHCSC-----------------------CTTCEEEEECCSSS
T ss_pred HcCCCcHHHHHHHHHHHHhHH---------HHHHHHHHHhccc-----------------------CCCCEEEEEecccC
Confidence 999999999999999985433 2343333322210 0124788888753
Q ss_pred ---------HHHHHHHHHHhCCCeEEEEeCChhH-HHH-HHh---------cCCcccCCHHHHhccCcEEEEEcCChHHH
Q 001973 157 ---------MGFGMATHLLRSNFTVIGYDVYRPT-LTK-FQN---------VGGLIANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 157 ---------mG~~lA~~L~~~G~~V~v~dr~~~~-~~~-l~~---------~G~~~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
=...++..|.+.|.+|.+||..... ... +.. ..+..++++.++++++|+|++++..+. .
T Consensus 340 ~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~~-f 418 (478)
T 2y0c_A 340 PNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAARDADALVIVTEWKI-F 418 (478)
T ss_dssp SSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHTTTCSEEEECSCCGG-G
T ss_pred CCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHHhCCCEEEEecCChH-h
Confidence 5678899999999999999986432 111 110 135667889999999999999999865 2
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCH
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p 244 (988)
+.+-. +.+...+ ...+|+|.-+...
T Consensus 419 ~~~~~--~~~~~~~-~~~~i~D~r~~~~ 443 (478)
T 2y0c_A 419 KSPDF--VALGRLW-KTPVIFDGRNLYE 443 (478)
T ss_dssp GSCCH--HHHHTTC-SSCEEEESSCCSC
T ss_pred hccCH--HHHHhhc-CCCEEEECCCCCC
Confidence 21100 1222223 3589999988754
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-07 Score=110.45 Aligned_cols=198 Identities=9% Similarity=0.021 Sum_probs=138.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-c--hHHHHHHhHHHHHHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-H--FLNAFIQNLGIALDMAK 77 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f--~l~l~~KDl~la~~~a~ 77 (988)
+++|.+.+++++.+.|+..++++.|+|++.+.++++.++ ++....|.| | ....+.||+++++..|+
T Consensus 228 l~~N~~~a~~ia~~nE~~~la~~~Gid~~~v~~~~~~~~-----------ri~~~~~~pg~g~gg~c~~KD~~~l~~~A~ 296 (481)
T 2o3j_A 228 LVANAFLAQRISSINSISAVCEATGAEISEVAHAVGYDT-----------RIGSKFLQASVGFGGSCFQKDVLSLVYLCE 296 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHTST-----------TTCSSSCCCCSCCCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHccCC-----------CCCCCCCCCCCccCCccHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998764 222334566 4 56678999999999999
Q ss_pred hcCCC--CcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccc
Q 001973 78 TLAFP--LPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLG 155 (988)
Q Consensus 78 ~~g~~--~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G 155 (988)
+.|++ +|+.+++.+.=+.... -+++.+.+..+.. .+..+|+|+|+-
T Consensus 297 ~~g~~~~~~l~~~~~~~N~~~~~---------~~~~~~~~~l~~~-----------------------~~~~~v~vlGla 344 (481)
T 2o3j_A 297 SLNLPQVADYWQGVININNWQRR---------RFADKIIAELFNT-----------------------VTDKKIAIFGFA 344 (481)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHTTTC-----------------------CTTCEEEEECCS
T ss_pred HcCCCccchHHHHHHHHHHhhHH---------HHHHHHHHhhccc-----------------------cCCCeEEEEeee
Confidence 99999 8988887743322211 1233222221100 012478888874
Q ss_pred ----------hHHHHHHHHHHhCCCeEEEEeCChhHH---HHHHh--------cCCcccCCHHHHhccCcEEEEEcCChH
Q 001973 156 ----------AMGFGMATHLLRSNFTVIGYDVYRPTL---TKFQN--------VGGLIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 156 ----------~mG~~lA~~L~~~G~~V~v~dr~~~~~---~~l~~--------~G~~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
.-...+...|.+.|.+|.+||...... .+... ..+..++++.++++++|.|++++..+.
T Consensus 345 fK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~~ 424 (481)
T 2o3j_A 345 FKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAARGAHAIVVLTEWDE 424 (481)
T ss_dssp SSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHTTCSEEEECSCCGG
T ss_pred eCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHcCCCEEEEcCCcHH
Confidence 466789999999999999999764221 12221 124456788899999999999998865
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCH
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p 244 (988)
.+.+- .+.+...+....+|+|.-+...
T Consensus 425 -f~~~~--~~~~~~~~~~~~~i~D~r~~~~ 451 (481)
T 2o3j_A 425 -FVELN--YSQIHNDMQHPAAIFDGRLILD 451 (481)
T ss_dssp -GTTSC--HHHHHHHSCSSCEEEESSSCSC
T ss_pred -hhccC--HHHHHHhcCCCCEEEECCCCCC
Confidence 32210 0234444555668999887753
|
| >3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.69 E-value=1e-08 Score=114.89 Aligned_cols=57 Identities=11% Similarity=0.145 Sum_probs=38.1
Q ss_pred cccccHHHHHHHHHHC-CceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhccc
Q 001973 919 VRISSTKELLLNAEKG-EYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQ 975 (988)
Q Consensus 919 ~~lv~~~~ll~~A~~~-~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~ 975 (988)
|+|+||++||+.|+++ +|||++||+.|+|+++|++++||+.++||||+++++.++++
T Consensus 3 M~l~~mkelL~~ak~g~~~gi~av~~~n~e~i~Ail~aAee~~sPVIIe~t~~qv~~~ 60 (450)
T 3txv_A 3 MQENHLIDIARWSERPGPRGIPSICSAHPLVIEAAMLRAHREKAPVLIEATCNQVNQD 60 (450)
T ss_dssp ------------------CCEEEECCCCHHHHHHHHHHHHHSCSCEEEEEETTTSCTT
T ss_pred ccccCHHHHHHHHHhCCCcEEEEeCcCCHHHHHHHHHHHHHhCCCEEEEcChhhHhhc
Confidence 8899999999999986 69999999999999999999999999999999999988763
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-08 Score=95.70 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=81.1
Q ss_pred CCeEEEEcc----chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIGL----GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
..+|+|||+ |.||..++++|.+.||+|+.+|++.+.+ .|.+...|+.|+.+.+|++++++|. ..+.+++
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp~-~~v~~v~- 86 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVA- 86 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCH-HHHHHHH-
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeCH-HHHHHHH-
Confidence 458999999 9999999999999999977666654332 4888889999999999999999994 6677777
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD 265 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld 265 (988)
+++.+ ...+.+|++.++. .+++.+...+ .|+++++
T Consensus 87 --~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~--~Gi~~ig 121 (138)
T 1y81_A 87 --KEAVE-AGFKKLWFQPGAE----SEEIRRFLEK--AGVEYSF 121 (138)
T ss_dssp --HHHHH-TTCCEEEECTTSC----CHHHHHHHHH--HTCEEEC
T ss_pred --HHHHH-cCCCEEEEcCccH----HHHHHHHHHH--CCCEEEc
Confidence 34444 4456788888775 4666666665 4788886
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.68 E-value=8.3e-08 Score=112.18 Aligned_cols=198 Identities=10% Similarity=0.009 Sum_probs=137.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc---chHHHHHHhHHHHHHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL---HFLNAFIQNLGIALDMAK 77 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~---f~l~l~~KDl~la~~~a~ 77 (988)
+++|.+.+++++.+.|++.++++.|+|++.+.++++..+..++ ..|.| |....+.||++++++.|+
T Consensus 222 l~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~-----------~~~~pg~g~gg~c~~kD~~~l~~~a~ 290 (467)
T 2q3e_A 222 LAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGN-----------KFLKASVGFGGSCFQKDVLNLVYLCE 290 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTSTTTCS-----------SSCCCCSCCCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCCCCCc-----------cccCCCCCCCCccHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999987653221 11233 345567799999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHhhCc-CCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccch
Q 001973 78 TLAFPLPLLAVAHQQLILGLSHA-HANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGA 156 (988)
Q Consensus 78 ~~g~~~p~~~~~~~~~~~a~~~G-~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~ 156 (988)
+.|++ .+.++|+++.+.+ ++.+++... +.+...+ ..+..||+|+|+-.
T Consensus 291 ~~g~~-----~~~~~~~~~~~~n~~~~~~~~~~--~~~~~~~------------------------~~~~~~v~vlGlaf 339 (467)
T 2q3e_A 291 ALNLP-----EVARYWQQVIDMNDYQRRRFASR--IIDSLFN------------------------TVTDKKIAILGFAF 339 (467)
T ss_dssp HTTCH-----HHHHHHHHHHHHHHHHHHHHHHH--HHHHTTT------------------------CCTTCEEEEECCSS
T ss_pred HcCCc-----hHHHHHHHHHHHHHHhHHHHHHH--HHHHhhc------------------------ccCCCEEEEEeecc
Confidence 99975 5567777777654 233333221 1111111 01225899999976
Q ss_pred ----------HHHHHHHHHHhCCCeEEEEeCCh--hHHHHHH-----------hcCCcccCCHHHHhccCcEEEEEcCCh
Q 001973 157 ----------MGFGMATHLLRSNFTVIGYDVYR--PTLTKFQ-----------NVGGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 157 ----------mG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~-----------~~G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
-...++..|.+.|.+|.+||... +...... ..++..++++.++++++|.|++++..+
T Consensus 340 K~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~ 419 (467)
T 2q3e_A 340 KKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWD 419 (467)
T ss_dssp STTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHHTTCSEEEECSCCG
T ss_pred CCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHHhCCcEEEEecCCh
Confidence 78899999999999999999853 2221111 013455678899999999999999986
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
. .+.+- .+.+...+....+|+|.-+..
T Consensus 420 ~-f~~~~--~~~~~~~~~~~~~i~D~r~~~ 446 (467)
T 2q3e_A 420 M-FKELD--YERIHKKMLKPAFIFDGRRVL 446 (467)
T ss_dssp G-GGGSC--HHHHHHHSCSSCEEEESSCTT
T ss_pred h-hhcCC--HHHHHHhcCCCCEEEeCCCcC
Confidence 5 32210 123444455556699987765
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.3e-07 Score=105.21 Aligned_cols=187 Identities=13% Similarity=0.138 Sum_probs=136.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccc--cCCCCc---chHHHHHHhHHHHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLL--RGDAKL---HFLNAFIQNLGIALDM 75 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~--~~~~~~---f~l~l~~KDl~la~~~ 75 (988)
+++|.+.+..+..+.|+..++++.|+|++.+.+++... +++. ++.|.| |....+.||++++.+.
T Consensus 211 l~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~-----------~r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~ 279 (436)
T 1mv8_A 211 YTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQD-----------HKLNLSRYYMRPGFAFGGSCLPKDVRALTYR 279 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTC-----------TTTTTSSTTCSCCSCCCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC-----------CCCCCcccCCCCcccccCcCcHhhHHHHHHH
Confidence 36799999999999999999999999999999998752 2222 344555 5567899999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccc
Q 001973 76 AKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLG 155 (988)
Q Consensus 76 a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G 155 (988)
|++.|+++|+.+++.+..+...+. +++.+.+. +..||+|+|+.
T Consensus 280 a~~~g~~~pl~~~v~~in~~~~~~---------~~~~~~~~----------------------------~~~~v~vlGla 322 (436)
T 1mv8_A 280 ASQLDVEHPMLGSLMRSNSNQVQK---------AFDLITSH----------------------------DTRKVGLLGLS 322 (436)
T ss_dssp HHHTTCCCTTGGGHHHHHHHHHHH---------HHHHHTTS----------------------------SCCEEEEECCS
T ss_pred HHHcCCCcHHHHHHHHHHhHhHHH---------HHHHHHHh----------------------------cCCEEEEEccc
Confidence 999999999999998886533221 22222211 12489999997
Q ss_pred ----------hHHHHHHHHHHhCCCeEEEEeCChhHHH------HHHhc--C---CcccCCHHHHhccCcEEEEEcCChH
Q 001973 156 ----------AMGFGMATHLLRSNFTVIGYDVYRPTLT------KFQNV--G---GLIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 156 ----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~------~l~~~--G---~~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
.-...++..|.+.|.+|.+||..-+... .+... + ...++++.++++++|+|++++..+.
T Consensus 323 fK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vi~~~~~~ 402 (436)
T 1mv8_A 323 FKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDEL 402 (436)
T ss_dssp SSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEEEECSCCGG
T ss_pred cCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCCcEEEEeCCcHH
Confidence 5688999999999999999997633321 12110 0 1557888999999999999999865
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
.+.+- ..+.++.+|+|.-+..
T Consensus 403 -~~~~~-------~~~~~~~~i~D~r~~~ 423 (436)
T 1mv8_A 403 -FVDLV-------NKTPSGKKLVDLVGFM 423 (436)
T ss_dssp -GHHHH-------HSCCTTCEEEESSSCC
T ss_pred -HHhhh-------HHhcCCCEEEECCCCC
Confidence 44332 1122367899987754
|
| >2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7 | Back alignment and structure |
|---|
Probab=98.57 E-value=4e-08 Score=110.34 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=54.5
Q ss_pred HHHHHHHHHHCC-ceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhc----ccC--HH-HHHhhh
Q 001973 924 TKELLLNAEKGE-YAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFK----VQY--IT-LVTSSI 984 (988)
Q Consensus 924 ~~~ll~~A~~~~-yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~----~~~--~~-~~~~~~ 984 (988)
|++||+.|++++ |||+|||+.|+|+++|++++||+.++|||||++++.++ |.| ++ +..++.
T Consensus 1 ~~~ll~~~~~~~a~av~afn~~n~e~i~Ail~aAee~~sPVIi~~s~~~v~~~gGY~g~~~~~~~~~v~ 69 (420)
T 2fiq_A 1 MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVF 69 (420)
T ss_dssp CHHHHHHHHTTCCBCEEEECCCCHHHHHHHHHHTTTSCCCEEEEEETTTBSTTCTTTTBCHHHHHHHHH
T ss_pred CHHHHHHHHcCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEcChhhhhhccCCCCCCHHHHHHHHH
Confidence 589999999999 99999999999999999999999999999999999998 888 44 334443
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5.8e-08 Score=105.38 Aligned_cols=109 Identities=16% Similarity=0.191 Sum_probs=82.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHH--HHHHccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQA--ESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~--~~vl~~~ 223 (988)
++|+|||+|.||.+++..|.+.|++|++|||++++.+++.+. |+...+++.++++++|+||+|+|....- ...+
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i--- 206 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIF--- 206 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSS---
T ss_pred CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCC---
Confidence 589999999999999999999999999999999998887654 6566668888889999999999986521 1111
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
. .+.+.++.+++|+++ .. ..+.+...+ .|..++++
T Consensus 207 ~--~~~l~~g~~viDv~~-~~---t~ll~~a~~--~g~~~v~g 241 (275)
T 2hk9_A 207 N--YDLIKKDHVVVDIIY-KE---TKLLKKAKE--KGAKLLDG 241 (275)
T ss_dssp C--GGGCCTTSEEEESSS-SC---CHHHHHHHH--TTCEEECS
T ss_pred C--HHHcCCCCEEEEcCC-Ch---HHHHHHHHH--CcCEEECC
Confidence 0 245788999999998 22 223333334 45666654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.55 E-value=7.9e-07 Score=85.33 Aligned_cols=110 Identities=14% Similarity=0.163 Sum_probs=76.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcc-c---CCHHH---H-hccCcEEEEEcCChHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLI-A---NSPAE---A-AKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~-~---~s~~e---~-~~~aDvV~l~vp~~~~~ 216 (988)
.|+|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+. |... . .+... + ++++|+||+|+|++...
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~ 83 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN 83 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence 3699999999999999999999999999999999999888754 6532 1 22222 1 56899999999987543
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
..+. ...+.+.++++|+..++ +...+ .+.+ .|+.++..|
T Consensus 84 ~~~~----~~~~~~~~~~ii~~~~~--~~~~~----~l~~--~g~~~v~~p 122 (140)
T 1lss_A 84 LMSS----LLAKSYGINKTIARISE--IEYKD----VFER--LGVDVVVSP 122 (140)
T ss_dssp HHHH----HHHHHTTCCCEEEECSS--TTHHH----HHHH--TTCSEEECH
T ss_pred HHHH----HHHHHcCCCEEEEEecC--HhHHH----HHHH--cCCCEEECH
Confidence 3332 34555667777775544 33322 3333 356566555
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-07 Score=101.81 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=81.8
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHH--HHHHHcccc
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQ--AESVLYGDL 224 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~--~~~vl~~~~ 224 (988)
+|+|||+|.||.+++..|.+.|++|++|||++++.+.+.+. |.. .+++.++ +++|+|++|+|.+.. +..++
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l---- 191 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASPL---- 191 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCSS----
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCCC----
Confidence 89999999999999999999999999999999988877654 554 5677888 999999999998641 11112
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
. .+.++++++++|+++. |..+ ++.+...+ .|..++++
T Consensus 192 ~-~~~l~~g~~viD~~~~-p~~t-~l~~~a~~--~g~~~v~g 228 (263)
T 2d5c_A 192 P-AELFPEEGAAVDLVYR-PLWT-RFLREAKA--KGLKVQTG 228 (263)
T ss_dssp C-GGGSCSSSEEEESCCS-SSSC-HHHHHHHH--TTCEEECS
T ss_pred C-HHHcCCCCEEEEeecC-Cccc-HHHHHHHH--CcCEEECc
Confidence 1 3567889999999987 4333 35555555 45566543
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-07 Score=103.99 Aligned_cols=110 Identities=17% Similarity=0.227 Sum_probs=84.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc--cCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI--ANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~--~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
.++|+|||+|.||..+++.|...|++|++|||++++.+.+.+.|... ..++.++++++|+|++++|... + .
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~-----i-~- 229 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMI-----L-N- 229 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCC-----B-C-
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhh-----h-C-
Confidence 46999999999999999999999999999999998887776667653 3578888999999999999732 1 1
Q ss_pred cchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 224 LGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
+.....++++.++||++.....+. + +.... .|..+++.|
T Consensus 230 ~~~~~~mk~g~~lin~a~g~~~~~--~-~~a~~--~G~~~i~~p 268 (300)
T 2rir_A 230 QTVLSSMTPKTLILDLASRPGGTD--F-KYAEK--QGIKALLAP 268 (300)
T ss_dssp HHHHTTSCTTCEEEECSSTTCSBC--H-HHHHH--HTCEEEECC
T ss_pred HHHHHhCCCCCEEEEEeCCCCCcC--H-HHHHH--CCCEEEECC
Confidence 234566889999999997643331 2 22223 367777776
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=5.7e-07 Score=99.31 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=73.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhc----------CCcc-cCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNV----------GGLI-ANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~----------G~~~-~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+|.||+++|..|+++| ++|++||+++++++.+... .... ++++ ++++++|+||++++.+
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~ 80 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI 80 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence 69999999999999999999999 8999999999888766531 1333 4566 7789999999999986
Q ss_pred HH-------------------HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHH
Q 001973 214 AQ-------------------AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLER 252 (988)
Q Consensus 214 ~~-------------------~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~ 252 (988)
.. ++++. +.+.+.. ++.+++. .|.+.+....+..
T Consensus 81 ~~~~~~~g~~r~~l~~~n~~i~~~i~---~~i~~~~-~~~~ii~-~tNp~~~~~~~~~ 133 (309)
T 1hyh_A 81 KLQQDNPTGDRFAELKFTSSMVQSVG---TNLKESG-FHGVLVV-ISNPVDVITALFQ 133 (309)
T ss_dssp GGTC-------CTTHHHHHHHHHHHH---HHHHHTT-CCSEEEE-CSSSHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCcEEEE-EcCcHHHHHHHHH
Confidence 63 34555 4455544 5666666 4445555433433
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=7.2e-08 Score=107.93 Aligned_cols=114 Identities=20% Similarity=0.230 Sum_probs=88.6
Q ss_pred CCCeEEEEccchHHHHHHHHHHh--CCCeEEEEeCChhHHHHHHhc-----C--CcccCCHHHHhccCcEEEEEcCChHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR--SNFTVIGYDVYRPTLTKFQNV-----G--GLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~-----G--~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
..++|+|||+|.||..++..|.. ...+|++|||++++.+++.+. | +..+++++++++++|+|++|+|+..
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~- 206 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA- 206 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-
Confidence 45699999999999999998864 347899999999999988764 5 3457899999999999999999862
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
...++. ...+++|+.|++.++..|. .+++...+.. ++..|+|..
T Consensus 207 ~~pvl~-----~~~l~~G~~V~~vgs~~p~-~~El~~~~~~--~a~v~vD~~ 250 (350)
T 1x7d_A 207 YATIIT-----PDMLEPGMHLNAVGGDCPG-KTELHADVLR--NARVFVEYE 250 (350)
T ss_dssp EEEEEC-----GGGCCTTCEEEECSCCBTT-BEEECHHHHH--TSEEEESSH
T ss_pred CCceec-----HHHcCCCCEEEECCCCCCC-ceeeCHHHHh--cCcEEECCH
Confidence 122321 2467899999999999888 5666655554 345777753
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.9e-08 Score=93.29 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=78.9
Q ss_pred CeEEEEcc----chHHHHHHHHHHhCCCeEEEEeCCh--hHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGL----GAMGFGMATHLLRSNFTVIGYDVYR--PTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~----G~mG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
.+|+|||+ |.||..++++|.+.||+|+.+|++. +.+ .|.+...|+.|+.+.+|++++|+|. ..+.+++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp~-~~v~~v~ 87 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRNS-EAAWGVA 87 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSCS-THHHHHH
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHH
Confidence 58999999 8999999999999999977777665 332 4788888999988899999999996 5577776
Q ss_pred ccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 221 YGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
+++.+ ...+.+|++.++. .+++.+.+.+ .|++++
T Consensus 88 ---~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~--~Gi~~i 121 (145)
T 2duw_A 88 ---QEAIA-IGAKTLWLQLGVI----NEQAAVLARE--AGLSVV 121 (145)
T ss_dssp ---HHHHH-HTCCEEECCTTCC----CHHHHHHHHT--TTCEEE
T ss_pred ---HHHHH-cCCCEEEEcCChH----HHHHHHHHHH--cCCEEE
Confidence 34444 3445688887666 4666666665 578887
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.4e-07 Score=89.03 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=72.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCc--ccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGL--IANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~--~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
.++|+|||+|.||..++..|.+.|++|++|||++++.+.+.+. |.. ..++..++++++|+||.|+|.+.. ++
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~---~~-- 95 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTP---IV-- 95 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSC---SB--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCc---Ee--
Confidence 4699999999999999999999999999999999998886643 543 467888999999999999998631 11
Q ss_pred ccchhhhCCCCCEEEecCC
Q 001973 223 DLGAVSALSSGASIILSST 241 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st 241 (988)
. ...+.+|.+++|.+.
T Consensus 96 --~-~~~l~~g~~vid~~~ 111 (144)
T 3oj0_A 96 --E-ERSLMPGKLFIDLGN 111 (144)
T ss_dssp --C-GGGCCTTCEEEECCS
T ss_pred --e-HHHcCCCCEEEEccC
Confidence 1 245678999999874
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-07 Score=104.63 Aligned_cols=105 Identities=22% Similarity=0.262 Sum_probs=89.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
++|||||+|.+|..+|+.+...|.+|.+||+.+.. ...+.+.. ..++++++++||+|.+++|-....+.++. ++.
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~--~~~~~~~~-~~~l~ell~~sDivslh~Plt~~T~~li~--~~~ 216 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRE--DLKEKGCV-YTSLDELLKESDVISLHVPYTKETHHMIN--EER 216 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBC--HHH
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccch--hhhhcCce-ecCHHHHHhhCCEEEEcCCCChhhccCcC--HHH
Confidence 58999999999999999999999999999987643 23344554 45899999999999999998887777764 456
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+..+++|.++|+++-+..-....+.+.+.+
T Consensus 217 l~~mk~~a~lIN~aRG~iVde~aL~~aL~~ 246 (334)
T 3kb6_A 217 ISLMKDGVYLINTARGKVVDTDALYRAYQR 246 (334)
T ss_dssp HHHSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred HhhcCCCeEEEecCccccccHHHHHHHHHh
Confidence 788999999999999888777888888876
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-06 Score=98.95 Aligned_cols=172 Identities=13% Similarity=0.049 Sum_probs=124.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc---chHHHHHHhHHHHHHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL---HFLNAFIQNLGIALDMAK 77 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~---f~l~l~~KDl~la~~~a~ 77 (988)
|++|.+.+++++.+.|++.++++.|+|++.+.++++.++ ++....+.| |....+.||+.++++.|+
T Consensus 205 l~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~-----------ri~~~~~~pg~g~gg~c~~kD~~~l~~~a~ 273 (402)
T 1dlj_A 205 LFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDD-----------RIGMHYNNPSFGYGGYSLPKDTKQLLANYN 273 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTST-----------TTCSSSCCCCSSCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCC-----------CCCcCCCCCCCccCCccHHhhHHHHHHHhc
Confidence 478999999999999999999999999999999998665 111122344 567899999999998885
Q ss_pred hcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccch-
Q 001973 78 TLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGA- 156 (988)
Q Consensus 78 ~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~- 156 (988)
|+++|+.+++.+.-+..... +++.+.+..+.. ..+..+|+|+|+-.
T Consensus 274 --~~~~~l~~~~~~~N~~~~~~---------~~~~~~~~~~~~----------------------~~~~~~v~vlGlafK 320 (402)
T 1dlj_A 274 --NIPQTLIEAIVSSNNVRKSY---------IAKQIINVLKEQ----------------------ESPVKVVGVYRLIMK 320 (402)
T ss_dssp --TSSCSHHHHHHHHHHHHHHH---------HHHHHHHHHTTS----------------------CCSSCEEEEECCCSS
T ss_pred --CCChHHHHHHHHHHHHhHHH---------HHHHHHHHhhhc----------------------CCCCCEEEEEeeecc
Confidence 89999999998877755432 333333322210 00124788888753
Q ss_pred ---------HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 157 ---------MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 157 ---------mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
=...++..|.+.|.+|.+||..-+.... ..+...+.++.++++++|+|++.+.++. .+++
T Consensus 321 ~~~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~~~~h~~-~~~~ 389 (402)
T 1dlj_A 321 SNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES--EDQSVLVNDLENFKKQANIIVTNRYDNE-LQDV 389 (402)
T ss_dssp TTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT--TCCSEECCCHHHHHHHCSEEECSSCCGG-GGGG
T ss_pred CCCcccccChHHHHHHHHHHCCCEEEEECCCCChHHH--HcCCeecCCHHHHHhCCcEEEEecCChH-HHHH
Confidence 4678999999999999999985332111 1244557789999999999999887764 4444
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.43 E-value=4.5e-07 Score=100.50 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=69.2
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHH----hc--------CCcccCCHHHHhccCcEEEEEcC
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQ----NV--------GGLIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~--------G~~~~~s~~e~~~~aDvV~l~vp 211 (988)
+.|||+|||+|.||+++|..|+.+|+ +|++||+++++++... .. .+..+++. +++++||+||++++
T Consensus 3 ~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg 81 (317)
T 2ewd_A 3 ERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITAS 81 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence 35799999999999999999999999 9999999988776531 10 12334666 78899999999994
Q ss_pred Ch---------------HHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 212 NE---------------AQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 212 ~~---------------~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.+ ...++++ +.+.+.. ++.+++..|+.
T Consensus 82 ~p~~~g~~r~d~~~~~~~i~~~i~---~~i~~~~-~~~iii~~sNp 123 (317)
T 2ewd_A 82 IPGRPKDDRSELLFGNARILDSVA---EGVKKYC-PNAFVICITNP 123 (317)
T ss_dssp CSSCCSSCGGGGHHHHHHHHHHHH---HHHHHHC-TTSEEEECCSS
T ss_pred CCCCCCCcHHHHHHhhHHHHHHHH---HHHHHHC-CCcEEEEeCCh
Confidence 32 2345555 4555654 57888877763
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.42 E-value=4e-07 Score=99.72 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=75.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc--CCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA--NSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~--~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
.++|+|||+|.||..+|+.|...|.+|++|||++++.+.+.+.|+... .++.++++++|+|++++|... +.
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~-----i~-- 227 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALV-----VT-- 227 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCC-----BC--
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHH-----hC--
Confidence 469999999999999999999999999999999988777776676543 567888999999999999632 11
Q ss_pred cchhhhCCCCCEEEecCCCCH
Q 001973 224 LGAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p 244 (988)
+.....++++.++||++....
T Consensus 228 ~~~l~~mk~~~~lin~ar~~~ 248 (293)
T 3d4o_A 228 ANVLAEMPSHTFVIDLASKPG 248 (293)
T ss_dssp HHHHHHSCTTCEEEECSSTTC
T ss_pred HHHHHhcCCCCEEEEecCCCC
Confidence 233456889999999997543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.6e-07 Score=82.71 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=75.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhcCCcc----c---CCHHHHhccCcEEEEEcCChHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNVGGLI----A---NSPAEAAKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~G~~~----~---~s~~e~~~~aDvV~l~vp~~~~~~ 217 (988)
+++|.|+|+|.||..++..|.+.| ++|+++||++++.+.+...+... . ++..++++++|+||.|+|... ..
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~~ 83 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-TP 83 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-HH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-hH
Confidence 368999999999999999999999 99999999999998887655432 1 234456778999999998654 23
Q ss_pred HHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ 255 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~ 255 (988)
.+. + .....|..++|.++. +...+.+.+...
T Consensus 84 ~~~---~---~~~~~g~~~~~~~~~-~~~~~~~~~~~~ 114 (118)
T 3ic5_A 84 IIA---K---AAKAAGAHYFDLTED-VAATNAVRALVE 114 (118)
T ss_dssp HHH---H---HHHHTTCEEECCCSC-HHHHHHHHHHHH
T ss_pred HHH---H---HHHHhCCCEEEecCc-HHHHHHHHHHHH
Confidence 333 1 123457788888765 556666665543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.6e-07 Score=90.64 Aligned_cols=111 Identities=13% Similarity=0.194 Sum_probs=78.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhC-CCeEEEEeCChhHHHHHHhcCCccc----CCH---HHH--hccCcEEEEEcCChHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS-NFTVIGYDVYRPTLTKFQNVGGLIA----NSP---AEA--AKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~G~~~~----~s~---~e~--~~~aDvV~l~vp~~~~ 215 (988)
.++|.|+|+|.||..++..|.+. |++|+++|+++++.+.+.+.|.... ++. .++ ++++|+||+++|++..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~ 118 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQG 118 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHH
Confidence 35899999999999999999999 9999999999999999988886532 222 233 5679999999999876
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
...++ .....+.+...++.. +..+.....+ .+ .|..++..|
T Consensus 119 ~~~~~----~~~~~~~~~~~ii~~-~~~~~~~~~l----~~--~G~~~vi~p 159 (183)
T 3c85_A 119 NQTAL----EQLQRRNYKGQIAAI-AEYPDQLEGL----LE--SGVDAAFNI 159 (183)
T ss_dssp HHHHH----HHHHHTTCCSEEEEE-ESSHHHHHHH----HH--HTCSEEEEH
T ss_pred HHHHH----HHHHHHCCCCEEEEE-ECCHHHHHHH----HH--cCCCEEEch
Confidence 65555 234445544444433 4456655433 33 245555444
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-06 Score=96.45 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=82.8
Q ss_pred CCCeEEEEccchHHHH-HHHHHHh-CCCeEE-EEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFG-MATHLLR-SNFTVI-GYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~-lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
+++||||||+|.||.. ++..|.+ .++++. ++|+++++.+.+.+. |+...++++++++++|+|++|+|+....+.+.
T Consensus 5 ~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~ 84 (308)
T 3uuw_A 5 KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEIIK 84 (308)
T ss_dssp CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHHH
T ss_pred ccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHH
Confidence 4579999999999996 8998987 467766 799999999887754 77778999999999999999999987665544
Q ss_pred ccccchhhhCCCCC-EEEe-cCCCCHHHHHHHHHHHHhc
Q 001973 221 YGDLGAVSALSSGA-SIIL-SSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 221 ~~~~~i~~~l~~g~-ivId-~st~~p~~~~~l~~~l~~~ 257 (988)
.. +..|+ +++. -.+..+..++++.+...+.
T Consensus 85 ----~a---l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (308)
T 3uuw_A 85 ----IL---LNLGVHVYVDKPLASTVSQGEELIELSTKK 116 (308)
T ss_dssp ----HH---HHTTCEEEECSSSSSSHHHHHHHHHHHHHH
T ss_pred ----HH---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 22 23343 5554 2567788999988877763
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-06 Score=98.42 Aligned_cols=110 Identities=10% Similarity=0.093 Sum_probs=84.6
Q ss_pred hcCCCCCeEEEEccchHHHHHHHHHHhC--CCeEE-EEeCChhHHHHHHhc-CCcccCCHHHHhc--cCcEEEEEcCChH
Q 001973 141 AKSNSVTRVGFIGLGAMGFGMATHLLRS--NFTVI-GYDVYRPTLTKFQNV-GGLIANSPAEAAK--DVGVLVIMVTNEA 214 (988)
Q Consensus 141 m~~~~~~kIgiIG~G~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~-G~~~~~s~~e~~~--~aDvV~l~vp~~~ 214 (988)
|+.++++||||||+|.||..++..|.+. ++++. ++|+++++.+.+.+. |+...+|++++++ ++|+|++|+|+..
T Consensus 8 m~~~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 87 (354)
T 3q2i_A 8 PITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGL 87 (354)
T ss_dssp CCCSSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGG
T ss_pred cCCCCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHH
Confidence 3444567999999999999999999987 67754 899999999887654 8888899999987 7999999999987
Q ss_pred HHHHHHccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHhc
Q 001973 215 QAESVLYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQFE 257 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~~ 257 (988)
..+.+. . .+..| ++++..- +..+..++++.+...+.
T Consensus 88 h~~~~~----~---al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~ 125 (354)
T 3q2i_A 88 HPTQSI----E---CSEAGFHVMTEKPMATRWEDGLEMVKAADKA 125 (354)
T ss_dssp HHHHHH----H---HHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHH----H---HHHCCCCEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 655543 2 22334 4455443 66788888888877663
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.9e-06 Score=96.58 Aligned_cols=106 Identities=15% Similarity=0.235 Sum_probs=84.1
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhc-CCcccCCHHHHhc--cCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQNV-GGLIANSPAEAAK--DVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~-G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~v 219 (988)
+++||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+. |....++++++++ ++|+|++|+|+....+.+
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 82 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLI 82 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHH
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHH
Confidence 346999999999999999999986 67765 799999999887654 7788899999998 899999999998766655
Q ss_pred HccccchhhhCCCCCEEEecC-CCCHHHHHHHHHHHHh
Q 001973 220 LYGDLGAVSALSSGASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
. ..++. ..++++... +..+..++++.+...+
T Consensus 83 ~----~al~~--gk~v~~EKP~~~~~~~~~~l~~~a~~ 114 (344)
T 3euw_A 83 T----RAVER--GIPALCEKPIDLDIEMVRACKEKIGD 114 (344)
T ss_dssp H----HHHHT--TCCEEECSCSCSCHHHHHHHHHHHGG
T ss_pred H----HHHHc--CCcEEEECCCCCCHHHHHHHHHHHHh
Confidence 4 22221 235777654 7788899998887766
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-06 Score=95.53 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=80.0
Q ss_pred CCCeEEEEccchHHHH-HHHHHHh-CCCeEE-EEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFG-MATHLLR-SNFTVI-GYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~-lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
+++||||||+|.||.. ++..|.+ .++++. ++|+++++.+.+.+. |+...++.+++..++|+|++|+|+....+.+.
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~ 83 (319)
T 1tlt_A 4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS 83 (319)
T ss_dssp -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHHH
Confidence 4579999999999996 8888876 467865 899999998887654 77777888877678999999999877655543
Q ss_pred ccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHh
Q 001973 221 YGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 221 ~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~ 256 (988)
..+..|+ ++++. .+..+...+++.+...+
T Consensus 84 -------~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~ 114 (319)
T 1tlt_A 84 -------TLLNAGVHVCVDKPLAENLRDAERLVELAAR 114 (319)
T ss_dssp -------HHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred -------HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2233454 66664 46678888888887766
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-06 Score=96.17 Aligned_cols=103 Identities=16% Similarity=0.086 Sum_probs=72.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHH----h----c----CCcccCCHHHHhccCcEEEEEcC
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQ----N----V----GGLIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~----~----G~~~~~s~~e~~~~aDvV~l~vp 211 (988)
++|||+|||+|.||+++|..|+..|+ +|++||+++++++... + . .+..++++++++++||+||+++.
T Consensus 8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g 87 (331)
T 1pzg_A 8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 87 (331)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccC
Confidence 45799999999999999999999998 9999999998776521 1 1 12336788888999999999983
Q ss_pred ChH--------------------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHH
Q 001973 212 NEA--------------------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLER 252 (988)
Q Consensus 212 ~~~--------------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~ 252 (988)
.+. .++++. +.+.+.. ++.+++.. |++.+..-.+..
T Consensus 88 ~p~~~g~~~~~~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~vi~~-tNP~~~~t~~~~ 143 (331)
T 1pzg_A 88 LTKVPGKPDSEWSRNDLLPFNSKIIREIG---QNIKKYC-PKTFIIVV-TNPLDCMVKVMC 143 (331)
T ss_dssp CSSCTTCCGGGCCGGGGHHHHHHHHHHHH---HHHHHHC-TTCEEEEC-CSSHHHHHHHHH
T ss_pred CCCCCCcccCCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCcEEEEE-cCchHHHHHHHH
Confidence 221 134444 4555554 56666654 555665544443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.5e-06 Score=82.30 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=66.2
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc----cCCHHHH----hccCcEEEEEcCChHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI----ANSPAEA----AKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~----~~s~~e~----~~~aDvV~l~vp~~~~~ 216 (988)
++++|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+.|..+ .++.... +.++|+||+++|+...-
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n 84 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFN 84 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHH
Confidence 346899999999999999999999999999999999999998877642 1222221 35789999999976533
Q ss_pred HHHHccccchhhhCCCCCEEEecCC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
..+. .....+....+++-.++
T Consensus 85 ~~~~----~~a~~~~~~~iia~~~~ 105 (141)
T 3llv_A 85 LKIL----KALRSVSDVYAIVRVSS 105 (141)
T ss_dssp HHHH----HHHHHHCCCCEEEEESC
T ss_pred HHHH----HHHHHhCCceEEEEEcC
Confidence 3332 22333334556554443
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.32 E-value=3.9e-07 Score=98.08 Aligned_cols=99 Identities=9% Similarity=0.021 Sum_probs=81.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
+++|++++.++.+++|++.++++.|+|++ +++.++.+.+.+++. +.+.+.+++|.+ |+ ..||++++.+++++.
T Consensus 160 l~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~---~~~~~~~~~~~a~~~ 233 (264)
T 1i36_A 160 MLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFRE--SAISRLKSSCIHARR---RYEEMKEVQDMLAEV 233 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTHH--HHHHHHHHHHHTHHH---HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCccHHH--HHHHHhcCCCCcchh---hHHHHHHHHHHHHHh
Confidence 47899999999999999999999999998 779998877656643 456788888888 76 689999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCc
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDN 106 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~ 106 (988)
+++|+.+.+.+.|+++.+.|++.+|-
T Consensus 234 -v~~p~~~~v~~~~~~~~~~~~~~~~~ 259 (264)
T 1i36_A 234 -IDPVMPTCIIRIFDKLKDVKVSADAR 259 (264)
T ss_dssp -SCCSHHHHHHHHHHHHCC------GG
T ss_pred -cCchHHHHHHHHHHHHHHcCCChhhH
Confidence 99999999999999999988876654
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.4e-06 Score=95.20 Aligned_cols=134 Identities=17% Similarity=0.095 Sum_probs=96.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhc-CC-cccCCHHHHhc--cCcEEEEEcCChHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQNV-GG-LIANSPAEAAK--DVGVLVIMVTNEAQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~--~aDvV~l~vp~~~~~~~ 218 (988)
+++||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+. |+ ...++++++++ ++|+|++|+|+....+.
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 83 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSA 83 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHH
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHH
Confidence 457999999999999999999985 56765 789999998887654 66 57889999987 79999999999876655
Q ss_pred HHccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHH
Q 001973 219 VLYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGS 296 (988)
Q Consensus 219 vl~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ 296 (988)
+. .. +..| ++++... +..+..++++.+...+ .+..+..+... --...+..+++
T Consensus 84 ~~----~a---l~~gk~vl~EKP~~~~~~e~~~l~~~a~~--~g~~~~v~~~~----------------r~~p~~~~~k~ 138 (330)
T 3e9m_A 84 AK----LA---LSQGKPVLLEKPFTLNAAEAEELFAIAQE--QGVFLMEAQKS----------------VFLPITQKVKA 138 (330)
T ss_dssp HH----HH---HHTTCCEEECSSCCSSHHHHHHHHHHHHH--TTCCEEECCSG----------------GGCHHHHHHHH
T ss_pred HH----HH---HHCCCeEEEeCCCCCCHHHHHHHHHHHHH--cCCeEEEEEhh----------------hhCHHHHHHHH
Confidence 54 22 2233 5777665 7788899999887776 34433322110 11235677888
Q ss_pred HHH--hcCC
Q 001973 297 VLS--ALSE 303 (988)
Q Consensus 297 ll~--~~g~ 303 (988)
+++ .+|.
T Consensus 139 ~i~~g~iG~ 147 (330)
T 3e9m_A 139 TIQEGGLGE 147 (330)
T ss_dssp HHHTTTTCS
T ss_pred HHhCCCCCC
Confidence 887 4665
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.8e-06 Score=95.82 Aligned_cols=107 Identities=19% Similarity=0.167 Sum_probs=83.7
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~v 219 (988)
|+++||||||+|.||...+..|.+. +++|. ++|+++++.+...+.|+...+|++++++ +.|+|++|+|+....+.+
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 82 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELA 82 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 3457999999999999999999887 67764 7899999988776778888999999987 789999999998766555
Q ss_pred HccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHhc
Q 001973 220 LYGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQFE 257 (988)
Q Consensus 220 l~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~~ 257 (988)
. ..+..|+ +++.. -+..+..++++.+...+.
T Consensus 83 ~-------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~ 115 (359)
T 3e18_A 83 I-------SALEAGKHVVCEKPVTMTSEDLLAIMDVAKRV 115 (359)
T ss_dssp H-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred H-------HHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHh
Confidence 4 2233444 55554 366788888888877663
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.9e-06 Score=95.53 Aligned_cols=106 Identities=21% Similarity=0.262 Sum_probs=83.5
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC-CCeE-EEEeCChhHHHHHHhc-CCcccCCHHHHh--ccCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS-NFTV-IGYDVYRPTLTKFQNV-GGLIANSPAEAA--KDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~-G~~~~~s~~e~~--~~aDvV~l~vp~~~~~~~v 219 (988)
+++||||||+|.||..++..|.+. +++| .++|+++++.+.+.+. |+...+++++++ .+.|+|++|+|+....+.+
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 83 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVI 83 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHH
T ss_pred CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence 347999999999999999999987 7785 4889999999887654 888889999999 5689999999998766555
Q ss_pred HccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHhc
Q 001973 220 LYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQFE 257 (988)
Q Consensus 220 l~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~~ 257 (988)
. . .+..| ++++..- +..+..++++.+...+.
T Consensus 84 ~----~---al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (354)
T 3db2_A 84 E----Q---CARSGKHIYVEKPISVSLDHAQRIDQVIKET 116 (354)
T ss_dssp H----H---HHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred H----H---HHHcCCEEEEccCCCCCHHHHHHHHHHHHHc
Confidence 4 2 22334 4666654 67788999998877763
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.3e-06 Score=93.73 Aligned_cols=100 Identities=16% Similarity=0.107 Sum_probs=70.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHH----hc--------CCcccCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQ----NV--------GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~--------G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
++||+|||+|.||+++|..|+.+|+ +|++||+++++++... +. .+..+++. +++++||+||++++.
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~ 92 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGV 92 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCC
Confidence 3699999999999999999999999 9999999998776421 10 13344677 788999999999944
Q ss_pred hH---------------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHH
Q 001973 213 EA---------------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLE 251 (988)
Q Consensus 213 ~~---------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~ 251 (988)
+. .++++. +.+.+.. ++.+++..|+ +.+..-.+.
T Consensus 93 p~k~g~tr~dl~~~n~~i~~~i~---~~i~~~~-p~a~viv~tN-P~~~~t~~~ 141 (328)
T 2hjr_A 93 PRKPNMTRSDLLTVNAKIVGSVA---ENVGKYC-PNAFVICITN-PLDAMVYYF 141 (328)
T ss_dssp CCCTTCCSGGGHHHHHHHHHHHH---HHHHHHC-TTCEEEECCS-SHHHHHHHH
T ss_pred CCCCCCchhhHHhhhHHHHHHHH---HHHHHHC-CCeEEEEecC-chHHHHHHH
Confidence 32 234444 4555555 6667666544 444433333
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.7e-06 Score=78.95 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=70.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc----CCHH---H-HhccCcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA----NSPA---E-AAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~----~s~~---e-~~~~aDvV~l~vp~~~~~~~ 218 (988)
.+|.|+|+|.+|..++..|.+.|++|+++|+++++++.+.+.|.... ++.. + -+.++|++++++|++.....
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~ 87 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGE 87 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHH
Confidence 58999999999999999999999999999999999999998887531 2222 1 14689999999999875544
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQ 249 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~ 249 (988)
++ .....+.++..+|-.. ..+.....
T Consensus 88 ~~----~~a~~~~~~~~iiar~-~~~~~~~~ 113 (140)
T 3fwz_A 88 IV----ASARAKNPDIEIIARA-HYDDEVAY 113 (140)
T ss_dssp HH----HHHHHHCSSSEEEEEE-SSHHHHHH
T ss_pred HH----HHHHHHCCCCeEEEEE-CCHHHHHH
Confidence 44 2233344444444333 34555433
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=97.02 Aligned_cols=110 Identities=25% Similarity=0.291 Sum_probs=83.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHh--CCCeEEEEeCChhHHHHHHhc------CCcccCCHHHHhccCcEEEEEcCChHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR--SNFTVIGYDVYRPTLTKFQNV------GGLIANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~------G~~~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
..++|+|||+|.||..++..|.+ ...+|.+|||++++.+++.+. .+. ++++++++ ++|+|++|+|+..
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~-- 199 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK-- 199 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS--
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC--
Confidence 45699999999999999999987 347899999999999888753 234 78899999 9999999999753
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
.++. ...+++|+.|++.++..|. .+++...+.. ++..|+|.+
T Consensus 200 -pv~~-----~~~l~~G~~V~~ig~~~p~-~~el~~~~~~--~a~v~vD~~ 241 (322)
T 1omo_A 200 -PVVK-----AEWVEEGTHINAIGADGPG-KQELDVEILK--KAKIVVDDL 241 (322)
T ss_dssp -CCBC-----GGGCCTTCEEEECSCCSTT-CCCBCHHHHH--TEEEEESCH
T ss_pred -ceec-----HHHcCCCeEEEECCCCCCC-ccccCHHHHh--cCeEEECCH
Confidence 2221 2467899999999888887 4455444433 234677753
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.6e-06 Score=94.29 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=69.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHHHh---c------CCcc-cCCHHHHhccCcEEEEEcCChH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQN---V------GGLI-ANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~---~------G~~~-~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
|||+|||+|.||+++|..|+.+|+ +|++||+++++++.+.. . ...+ .++ .+++++||+||+++|.+.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence 589999999999999999999999 99999999988776542 1 1122 234 466889999999999743
Q ss_pred ---------------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHH
Q 001973 215 ---------------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLE 251 (988)
Q Consensus 215 ---------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~ 251 (988)
.++++. +.+.+.. ++.+++.. |.+.+....+.
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~---~~i~~~~-~~~~ii~~-tNp~~~~~~~~ 126 (319)
T 1a5z_A 80 KPGETRLQLLGRNARVMKEIA---RNVSKYA-PDSIVIVV-TNPVDVLTYFF 126 (319)
T ss_dssp CSSCCHHHHHHHHHHHHHHHH---HHHHHHC-TTCEEEEC-SSSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH---HHHHhhC-CCeEEEEe-CCcHHHHHHHH
Confidence 134444 4555554 56666665 44455543443
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.7e-06 Score=94.42 Aligned_cols=106 Identities=18% Similarity=0.126 Sum_probs=82.8
Q ss_pred CCCCeEEEEccchHHH-HHHHHHHhC-CCeEE-EEeCChhHHHHHHhc-CCcccCCHHHHhc--cCcEEEEEcCChHHHH
Q 001973 144 NSVTRVGFIGLGAMGF-GMATHLLRS-NFTVI-GYDVYRPTLTKFQNV-GGLIANSPAEAAK--DVGVLVIMVTNEAQAE 217 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~-~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~-G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~ 217 (988)
|+++||||||+|.||. .++..|.+. +++|. ++|+++++.+.+.+. |+...++++++++ +.|+|++|+|+....+
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 104 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAE 104 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHH
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 3457999999999998 799999887 67765 889999999887654 8887899999986 5899999999987666
Q ss_pred HHHccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 218 SVLYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
.+. . .+..| .+++..- +..+..++++.+...+
T Consensus 105 ~~~----~---al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 105 WID----R---ALRAGKHVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp HHH----H---HHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred HHH----H---HHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 554 2 22334 4566653 6778899999887776
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.8e-06 Score=92.75 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=82.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhc-CCcccCCHHHHhc--cCcEEEEEcCChHHHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQNV-GGLIANSPAEAAK--DVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~-G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl 220 (988)
++||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+. |+. .++++++++ ++|+|++|+|+....+.+.
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 81 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLIE 81 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHH
Confidence 36999999999999999999985 67866 799999998887654 777 899999988 7999999999987666554
Q ss_pred ccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 221 YGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 221 ~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
.. +..| ++++..- +..+..++++.+...+
T Consensus 82 ----~a---l~~gk~v~~EKP~~~~~~~~~~l~~~a~~ 112 (331)
T 4hkt_A 82 ----RF---ARAGKAIFCEKPIDLDAERVRACLKVVSD 112 (331)
T ss_dssp ----HH---HHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred ----HH---HHcCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 22 2234 4555543 7788999999888776
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.2e-06 Score=92.30 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=70.2
Q ss_pred CeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhHHHHHHh---cC---------CcccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRPTLTKFQN---VG---------GLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~---~G---------~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
|||+|||+|.||+++|..|+.+ |++|++||+++++++.+.. .. +..++++++ +++||+||+++|.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence 5999999999999999999985 7999999999988775431 11 233467766 8999999999986
Q ss_pred hH---------------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHH
Q 001973 213 EA---------------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLER 252 (988)
Q Consensus 213 ~~---------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~ 252 (988)
+. .++++. +.+.++. ++..++.. |++++....+..
T Consensus 80 p~~~g~~r~dl~~~n~~i~~~i~---~~i~~~~-~~~~viv~-tNP~~~~~~~~~ 129 (310)
T 1guz_A 80 PRKPGMTREDLLMKNAGIVKEVT---DNIMKHS-KNPIIIVV-SNPLDIMTHVAW 129 (310)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHH---HHHHHHC-SSCEEEEC-CSSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH---HHHHHhC-CCcEEEEE-cCchHHHHHHHH
Confidence 52 123333 3445554 55565555 556666544443
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-06 Score=101.09 Aligned_cols=101 Identities=16% Similarity=0.061 Sum_probs=81.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..++|+|||+|.||..+|++|...|.+|++||+++.+..+....|... .++.++++++|+|++++.+.. ++. .
T Consensus 256 ~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~~t~~----lI~--~ 328 (479)
T 1v8b_A 256 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVD----VIK--L 328 (479)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSS----SBC--H
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECCChhh----hcC--H
Confidence 456999999999999999999999999999999998875566667754 589999999999999974432 221 2
Q ss_pred chhhhCCCCCEEEecCCCCHH-HHHHHHH
Q 001973 225 GAVSALSSGASIILSSTVSPG-FVSQLER 252 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~-~~~~l~~ 252 (988)
+.++.+++|.++||+++..++ ....+.+
T Consensus 329 ~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 329 EHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp HHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred HHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 445678999999999998873 6666665
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=7.2e-06 Score=90.74 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=70.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHH----Hh----c--C--CcccCCHHHHhccCcEEEEEcC
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKF----QN----V--G--GLIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l----~~----~--G--~~~~~s~~e~~~~aDvV~l~vp 211 (988)
.++||+|||+|.||+++|..|+..|+ +|.+||+++++++.. .. . . +..+++. +++++||+||++++
T Consensus 3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g 81 (322)
T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAG 81 (322)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence 34799999999999999999999998 999999998876532 11 1 1 2334677 78999999999984
Q ss_pred ChH--------------------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHH
Q 001973 212 NEA--------------------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLER 252 (988)
Q Consensus 212 ~~~--------------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~ 252 (988)
.+. .++++. +.+.+.. ++.+++.. |++.+..-.+..
T Consensus 82 ~p~k~g~~~qe~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~iiv~-tNP~~~~t~~~~ 137 (322)
T 1t2d_A 82 FTKAPGKSDKEWNRDDLLPLNNKIMIEIG---GHIKKNC-PNAFIIVV-TNPVDVMVQLLH 137 (322)
T ss_dssp CSSCTTCCSTTCCGGGGHHHHHHHHHHHH---HHHHHHC-TTSEEEEC-SSSHHHHHHHHH
T ss_pred CCCCCCCCcccccHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEe-cCChHHHHHHHH
Confidence 331 244444 4455555 66666665 445555444433
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-06 Score=97.37 Aligned_cols=94 Identities=15% Similarity=0.259 Sum_probs=74.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccC-------------------------CHHHHh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIAN-------------------------SPAEAA 200 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~-------------------------s~~e~~ 200 (988)
..||+|||+|.||..+++.+...|.+|++||+++++.+.+.+.|..+.+ ++.+.+
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l 263 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAI 263 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHH
Confidence 3699999999999999999999999999999999999999888776533 456788
Q ss_pred ccCcEEEEEcCChHH-HHHHHccccchhhhCCCCCEEEecCC
Q 001973 201 KDVGVLVIMVTNEAQ-AESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 201 ~~aDvV~l~vp~~~~-~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
+++|+||.++..+.. ...++ .++..+.+++|.+|||++.
T Consensus 264 ~~aDIVI~tv~iPg~~ap~Lv--t~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 264 TKFDIVITTALVPGRPAPRLV--TAAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp TTCSEEEECCCCTTSCCCCCB--CHHHHHTSCTTCEEEETTG
T ss_pred hcCCEEEECCCCCCcccceee--cHHHHhcCCCCcEEEEEeC
Confidence 999999998733321 11112 1456778899999999885
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-06 Score=100.02 Aligned_cols=99 Identities=17% Similarity=0.072 Sum_probs=79.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..++|+|||+|.||..+|+.|...|.+|++||+++.+..+....|... .+++++++++|+|++++.+.. ++. .
T Consensus 276 ~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~~t~~----lI~--~ 348 (494)
T 3d64_A 276 AGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTATGNYH----VIN--H 348 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECSSSSC----SBC--H
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECCCccc----ccC--H
Confidence 356999999999999999999999999999999998765555567664 479999999999999985432 231 3
Q ss_pred chhhhCCCCCEEEecCCCCHH-HHHHH
Q 001973 225 GAVSALSSGASIILSSTVSPG-FVSQL 250 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~-~~~~l 250 (988)
+.++.+++|.++||+++.... ....+
T Consensus 349 ~~l~~MK~gAilINvgrg~veID~~aL 375 (494)
T 3d64_A 349 DHMKAMRHNAIVCNIGHFDSEIDVAST 375 (494)
T ss_dssp HHHHHCCTTEEEEECSSSSCSBCCGGG
T ss_pred HHHhhCCCCcEEEEcCCCcchhchHHH
Confidence 456778999999999998763 44444
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-06 Score=95.45 Aligned_cols=113 Identities=10% Similarity=0.048 Sum_probs=81.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-CC---ccc--CCHHHHhccCcEEEEEcCChHHH--
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-GG---LIA--NSPAEAAKDVGVLVIMVTNEAQA-- 216 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G~---~~~--~s~~e~~~~aDvV~l~vp~~~~~-- 216 (988)
.++|.|||+|.||.+++..|++.|. +|++|||++++++++.+. +. ... +++.+.+.++|+||.|+|.+...
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~ 220 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRV 220 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCC
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCC
Confidence 3689999999999999999999998 999999999999888754 32 221 24566778999999999976421
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
+.+.. -...+.++.+++|+++. |..+. +.+...+ .|..++++
T Consensus 221 ~~~~i----~~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~--~G~~~v~G 262 (297)
T 2egg_A 221 EVQPL----SLERLRPGVIVSDIIYN-PLETK-WLKEAKA--RGARVQNG 262 (297)
T ss_dssp SCCSS----CCTTCCTTCEEEECCCS-SSSCH-HHHHHHH--TTCEEECS
T ss_pred CCCCC----CHHHcCCCCEEEEcCCC-CCCCH-HHHHHHH--CcCEEECC
Confidence 10110 02346789999999995 55544 5555555 45666654
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-06 Score=97.29 Aligned_cols=95 Identities=13% Similarity=0.171 Sum_probs=74.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccC-----------------------------CH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIAN-----------------------------SP 196 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~-----------------------------s~ 196 (988)
..||+|||+|.||..+++.+...|.+|++||+++++.+.+.+.|..+.. ++
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l 269 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALV 269 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHH
Confidence 3699999999999999999999999999999999999888887765322 46
Q ss_pred HHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 197 AEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 197 ~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
.++++++|+||.|+..+......+. .++....+++|.+|||++.
T Consensus 270 ~e~l~~aDVVI~tvlipg~~ap~Lv-t~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 270 AEHIAKQDIVITTALIPGRPAPRLV-TREMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHHHTCSEEEECCCCSSSCCCCCB-CHHHHTTSCTTCEEEETTG
T ss_pred HHHhcCCCEEEECCcCCCCCCCEEe-cHHHHhcCCCCCEEEEEeC
Confidence 7788999999999743321111111 1466778899999999985
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=2.9e-06 Score=96.03 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=76.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|+|||+|.+|..+|..|...|.+|++||+++.+.......|... .++.++++.+|+|+++..+.. ++. .+
T Consensus 211 GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVilt~gt~~----iI~--~e 283 (436)
T 3h9u_A 211 GKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVVEEAHIFVTTTGNDD----IIT--SE 283 (436)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSC----SBC--TT
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHHhhCCEEEECCCCcC----ccC--HH
Confidence 46999999999999999999999999999999998877777778764 489999999999998765533 221 34
Q ss_pred hhhhCCCCCEEEecCCCCH
Q 001973 226 AVSALSSGASIILSSTVSP 244 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p 244 (988)
..+.+++|.+||+.+...+
T Consensus 284 ~l~~MK~gAIVINvgRg~v 302 (436)
T 3h9u_A 284 HFPRMRDDAIVCNIGHFDT 302 (436)
T ss_dssp TGGGCCTTEEEEECSSSGG
T ss_pred HHhhcCCCcEEEEeCCCCC
Confidence 5677899999999997665
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.5e-06 Score=90.31 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=79.1
Q ss_pred CeEEEEccchHHHHH-HHHHHhCCCeEE-EEeCChhHHHHHHhc-CCc-ccCCHHHHhc--cCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGLGAMGFGM-ATHLLRSNFTVI-GYDVYRPTLTKFQNV-GGL-IANSPAEAAK--DVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~G~mG~~l-A~~L~~~G~~V~-v~dr~~~~~~~l~~~-G~~-~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl 220 (988)
+||||||+|.||..+ +..|.+.++++. ++|+++++.+.+.+. |.. ..++++++++ ++|+|++|+|+....+.+.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 80 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL 80 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHH
Confidence 489999999999998 888888778865 789999998887654 664 6789999886 4999999999877555443
Q ss_pred ccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHh
Q 001973 221 YGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 221 ~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~ 256 (988)
..+..|+ ++++. .+..+...+++.+...+
T Consensus 81 -------~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~ 111 (332)
T 2glx_A 81 -------AAIRAGKHVLCEKPLAMTLEDAREMVVAARE 111 (332)
T ss_dssp -------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred -------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 2233455 55554 46678888888887766
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.3e-06 Score=94.62 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=79.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC-CCe-EEEEeCChhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS-NFT-VIGYDVYRPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~-G~~-V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl 220 (988)
+++||||||+|.||..++..|.+. +++ |.++|+++++.+.+.+. +...++++++++ ++|+|++|+|+....+.+.
T Consensus 9 ~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 87 (315)
T 3c1a_A 9 SPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEITL 87 (315)
T ss_dssp CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHHH
T ss_pred CcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHHH
Confidence 346999999999999999999986 566 55899999988766555 566788999885 7999999999877555443
Q ss_pred ccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHh
Q 001973 221 YGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 221 ~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~ 256 (988)
..+..|+ ++++. .+..+..++++.+...+
T Consensus 88 -------~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~ 118 (315)
T 3c1a_A 88 -------AAIASGKAVLVEKPLTLDLAEAEAVAAAAKA 118 (315)
T ss_dssp -------HHHHTTCEEEEESSSCSCHHHHHHHHHHHHH
T ss_pred -------HHHHCCCcEEEcCCCcCCHHHHHHHHHHHHH
Confidence 2233454 66663 46678888888887766
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=90.01 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=80.0
Q ss_pred CCCCeEEEEccchHHHHHHHHHH-h-CCCe-EEEEeCChhHHHHHHhc-CC-cccCCHHHHhc--cCcEEEEEcCChHHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLL-R-SNFT-VIGYDVYRPTLTKFQNV-GG-LIANSPAEAAK--DVGVLVIMVTNEAQA 216 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~-~-~G~~-V~v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~--~aDvV~l~vp~~~~~ 216 (988)
++++||||||+|.||..++..|. + .+++ |.++|+++++.+.+.+. |. ...+++.++++ ++|+|++|+|+....
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~ 85 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHP 85 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHH
T ss_pred CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHH
Confidence 34579999999999999999998 5 4677 56799999999887664 66 56789999886 699999999988765
Q ss_pred HHHHccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHh
Q 001973 217 ESVLYGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~ 256 (988)
+.+. ..+..|+ ++++. .+..+..++++.+...+
T Consensus 86 ~~~~-------~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~ 120 (346)
T 3cea_A 86 EMTI-------YAMNAGLNVFCEKPLGLDFNEVDEMAKVIKS 120 (346)
T ss_dssp HHHH-------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHT
T ss_pred HHHH-------HHHHCCCEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 5544 2233455 45543 35667788888776655
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=6e-06 Score=81.18 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=65.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHH-hcCCccc----CCH---HHH-hccCcEEEEEcCChHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ-NVGGLIA----NSP---AEA-AKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-~~G~~~~----~s~---~e~-~~~aDvV~l~vp~~~~~ 216 (988)
.++|.|+|+|.||..++..|.+.|++|+++|+++++.+.+. ..|.... .+. .++ +.++|+||+|++++...
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~ 98 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDSTN 98 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHHH
Confidence 47999999999999999999999999999999999988776 5565321 122 222 56899999999997755
Q ss_pred HHHHccccchhhhCCCCCEEEecC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSS 240 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~s 240 (988)
..+. .+...+.+...++-.+
T Consensus 99 ~~~~----~~~~~~~~~~~iv~~~ 118 (155)
T 2g1u_A 99 FFIS----MNARYMFNVENVIARV 118 (155)
T ss_dssp HHHH----HHHHHTSCCSEEEEEC
T ss_pred HHHH----HHHHHHCCCCeEEEEE
Confidence 5443 3344433434444333
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.13 E-value=7.5e-06 Score=90.86 Aligned_cols=103 Identities=12% Similarity=0.090 Sum_probs=76.4
Q ss_pred CeEEEEccchHHH-HHHHHHHhC-CCeEEEEeCChhHHHHHHhc-CCcc-cCCHHHHh-ccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGF-GMATHLLRS-NFTVIGYDVYRPTLTKFQNV-GGLI-ANSPAEAA-KDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~-~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~-G~~~-~~s~~e~~-~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+||||||+|.||. .++..|.+. +++|.++|+++++.+++.+. |+.. ..+..+.+ .++|+|++|+|+....+.+.
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~- 81 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA- 81 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH-
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHH-
Confidence 6999999999998 599999875 67877999999999887654 6653 44444555 68999999999876555443
Q ss_pred cccchhhhCCCC-CEEEec-CCCCHHHHHHHHHHHHh
Q 001973 222 GDLGAVSALSSG-ASIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 222 ~~~~i~~~l~~g-~ivId~-st~~p~~~~~l~~~l~~ 256 (988)
. .+..| .++++. .+.++...+++.+...+
T Consensus 82 ---~---al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~ 112 (323)
T 1xea_A 82 ---F---FLHLGIPTFVDKPLAASAQECENLYELAEK 112 (323)
T ss_dssp ---H---HHHTTCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred ---H---HHHCCCeEEEeCCCcCCHHHHHHHHHHHHh
Confidence 1 23344 466764 46678888888887766
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.9e-06 Score=90.81 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=67.9
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhcCCcc--cCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQNVGGLI--ANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~G~~~--~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
|+++||||||+|.||..++..|.+. ++++. ++|+++++.+. .|+.. .+++.+. .++|+|++|+|+....+.+
T Consensus 7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~~ 82 (304)
T 3bio_A 7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVERTA 82 (304)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHHH
T ss_pred CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhHHHH
Confidence 3457999999999999999999874 57876 79999988765 56542 3444444 6899999999987765544
Q ss_pred HccccchhhhCCCCCEEEecCCC---CHHHHHHHHHHHHh
Q 001973 220 LYGDLGAVSALSSGASIILSSTV---SPGFVSQLERRLQF 256 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~---~p~~~~~l~~~l~~ 256 (988)
. ..+..|+-+++.+.. .+...+++.+...+
T Consensus 83 ~-------~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~ 115 (304)
T 3bio_A 83 L-------EILKKGICTADSFDIHDGILALRRSLGDAAGK 115 (304)
T ss_dssp H-------HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHH
T ss_pred H-------HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHh
Confidence 3 345568888877543 45566677666655
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.11 E-value=8.6e-06 Score=91.21 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=81.4
Q ss_pred CeEEEEccchHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhc-CC-cccCCHHHHhc--cCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQNV-GG-LIANSPAEAAK--DVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl 220 (988)
+||||||+|.||..++..|.+. ++++. ++|+++++.+.+.+. |+ ...+|+.++++ ++|+|++|+|+....+.+.
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~ 82 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVI 82 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHHH
Confidence 6999999999999999999885 56765 789999998887654 65 47889999988 7999999999987655544
Q ss_pred ccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHhc
Q 001973 221 YGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQFE 257 (988)
Q Consensus 221 ~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~~ 257 (988)
. .+..| ++++..- +..+..++++.+...+.
T Consensus 83 ----~---al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~ 114 (344)
T 3ezy_A 83 ----A---CAKAKKHVFCEKPLSLNLADVDRMIEETKKA 114 (344)
T ss_dssp ----H---HHHTTCEEEEESCSCSCHHHHHHHHHHHHHH
T ss_pred ----H---HHhcCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2 22334 4666654 77889999998877763
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=4e-06 Score=80.65 Aligned_cols=68 Identities=13% Similarity=0.292 Sum_probs=54.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc----CCHH---HH-hccCcEEEEEcCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA----NSPA---EA-AKDVGVLVIMVTNE 213 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~----~s~~---e~-~~~aDvV~l~vp~~ 213 (988)
+++|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+.+.... .+.. ++ ..++|+|+.+++++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 457999999999999999999999999999999998887766554321 2222 22 56799999999975
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=90.12 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=82.2
Q ss_pred CCCeEEEEccchHHH-HHHHHHHhCCCeE-EEEeCChhHHHHHHhc--CCcccCCHHHHhc--cCcEEEEEcCChHHHHH
Q 001973 145 SVTRVGFIGLGAMGF-GMATHLLRSNFTV-IGYDVYRPTLTKFQNV--GGLIANSPAEAAK--DVGVLVIMVTNEAQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~-~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~--G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~ 218 (988)
+++||||||+|.||. .++..|...+++| .++|+++++.+.+.+. +....+|++++++ +.|+|++|+|+....+.
T Consensus 3 ~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 82 (336)
T 2p2s_A 3 KKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAEL 82 (336)
T ss_dssp -CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHH
T ss_pred CccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHH
Confidence 347999999999996 6888887778885 6899999998887765 5677899999987 68999999999876665
Q ss_pred HHccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHh
Q 001973 219 VLYGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~ 256 (988)
+. ..+..|+ ++++. .+..+..++++.+...+
T Consensus 83 ~~-------~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~ 115 (336)
T 2p2s_A 83 AL-------RTLDAGKDFFTAKPPLTTLEQLDAVQRRVAE 115 (336)
T ss_dssp HH-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred HH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 54 2233454 66665 56778888888887766
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.09 E-value=7.2e-06 Score=92.40 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=80.9
Q ss_pred CCCCeEEEEccchHHHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHhc--CCcccCCHHHHhcc--CcEEEEEcCChHHH
Q 001973 144 NSVTRVGFIGLGAMGFG-MATHLLRS-NFTVI-GYDVYRPTLTKFQNV--GGLIANSPAEAAKD--VGVLVIMVTNEAQA 216 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~--G~~~~~s~~e~~~~--aDvV~l~vp~~~~~ 216 (988)
|+++||||||+|.||.. ++..|.+. +.+|. ++|+++++.+.+.+. +....+|+++++++ .|+|++|+|+....
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~ 82 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHF 82 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHH
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHH
Confidence 34579999999999995 89999876 67765 889999999888765 56778999999875 49999999987765
Q ss_pred HHHHccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 217 ESVLYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
+.+. ..+..| .++++.- +..+..++++.+...+
T Consensus 83 ~~~~-------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~ 117 (359)
T 3m2t_A 83 EMGL-------LAMSKGVNVFVEKPPCATLEELETLIDAARR 117 (359)
T ss_dssp HHHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 5544 223344 3555543 6678888888887766
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.08 E-value=7.6e-06 Score=90.60 Aligned_cols=101 Identities=18% Similarity=0.328 Sum_probs=68.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHH--HHH-hcCC------cc--cCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLT--KFQ-NVGG------LI--ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~--~l~-~~G~------~~--~~s~~e~~~~aDvV~l~vp~ 212 (988)
+|||+|||+|.||+.+|..|+.+|+ +|++||+++++.+ .+. ..+. .+ .++. ++++++|+||++++.
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~aD~Vii~v~~ 85 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGP 85 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCCCCEEEECCCC
Confidence 4699999999999999999999999 9999999987765 221 2222 11 2243 567899999999965
Q ss_pred hH---------------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHH
Q 001973 213 EA---------------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLER 252 (988)
Q Consensus 213 ~~---------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~ 252 (988)
+. .+++++ +.+.+. .++.+|+..++ +.+....+..
T Consensus 86 ~~~~g~~r~~~~~~n~~~~~~~~---~~i~~~-~~~~~vi~~~N-p~~~~~~~~~ 135 (319)
T 1lld_A 86 RQKPGQSRLELVGATVNILKAIM---PNLVKV-APNAIYMLITN-PVDIATHVAQ 135 (319)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHH---HHHHHH-CTTSEEEECCS-SHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH---HHHHHh-CCCceEEEecC-chHHHHHHHH
Confidence 42 122444 344443 56677776544 4555444443
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-05 Score=88.61 Aligned_cols=95 Identities=14% Similarity=0.151 Sum_probs=63.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHHHh---cC------CcccCCHHHHhccCcEEEEEcCChH-
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQN---VG------GLIANSPAEAAKDVGVLVIMVTNEA- 214 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~---~G------~~~~~s~~e~~~~aDvV~l~vp~~~- 214 (988)
|||+|||+|.||+++|..|+.+|+ +|++||+++++++.... .+ .++..+..+++++||+||++++.+.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~~~ 80 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGANQK 80 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC-----
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCCCC
Confidence 599999999999999999999999 99999999987654221 11 1222122467899999999996553
Q ss_pred --------------HHHHHHccccchhhhCCCCCEEEecCCCCHHH
Q 001973 215 --------------QAESVLYGDLGAVSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 215 --------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~ 246 (988)
.++++. +.+.+. .++.+++..|+ +.+.
T Consensus 81 ~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~~~vi~~tN-P~~~ 121 (304)
T 2v6b_A 81 PGESRLDLLEKNADIFRELV---PQITRA-APDAVLLVTSN-PVDL 121 (304)
T ss_dssp -------CHHHHHHHHHHHH---HHHHHH-CSSSEEEECSS-SHHH
T ss_pred CCCcHHHHHHhHHHHHHHHH---HHHHHh-CCCeEEEEecC-chHH
Confidence 224444 345555 46677776543 4443
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.5e-06 Score=98.74 Aligned_cols=243 Identities=16% Similarity=0.099 Sum_probs=174.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---hhccCCchhhhccccccccCCCCc-chHHHHH-----HhHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQ-FGIHPWVLYDII---SNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFI-----QNLG 70 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~-~Gld~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~-----KDl~ 70 (988)
+++|.+.+..+.+++|++.|+++ +|++++.+.+++ +.+.+.|++++.+.+.+.++||++ |.++.+. ||++
T Consensus 191 l~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~~d~~~~~~vd~i~D~~~~KgtG 270 (497)
T 2p4q_A 191 MVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFDDVDGKPLVEKIMDTAGQKGTG 270 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHHHTCBCTTSSBGGGGSCCCCCCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHHHhcCCCCCccHHHHHHHhhccchHH
Confidence 47999999999999999999999 699999999998 468899999999988899999977 8899888 8886
Q ss_pred -HHHHHHHhcCCCCcHHHHHH-HHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCe
Q 001973 71 -IALDMAKTLAFPLPLLAVAH-QQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTR 148 (988)
Q Consensus 71 -la~~~a~~~g~~~p~~~~~~-~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~k 148 (988)
++.+.|.+.|+|+|+.+.+. ..+.... +..
T Consensus 271 ~~~~~~A~~~Gv~~P~~~~av~ar~~s~~---------------------------------------k~~--------- 302 (497)
T 2p4q_A 271 KWTAINALDLGMPVTLIGEAVFARCLSAL---------------------------------------KNE--------- 302 (497)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHC---------------------------------------HHH---------
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhhcc---------------------------------------hhh---------
Confidence 78999999999999987753 2222110 000
Q ss_pred EEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhh
Q 001973 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVS 228 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~ 228 (988)
+. ....++
T Consensus 303 --------------------------------r~--------------------------------~~~~~~-------- 310 (497)
T 2p4q_A 303 --------------------------------RI--------------------------------RASKVL-------- 310 (497)
T ss_dssp --------------------------------HH--------------------------------HHHHHC--------
T ss_pred --------------------------------HH--------------------------------HHhhhc--------
Confidence 00 000011
Q ss_pred hCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEE
Q 001973 229 ALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 229 ~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
..|. +. .+ +
T Consensus 311 ------------------------------------~gp~-----------------~~---------------~~---~ 319 (497)
T 2p4q_A 311 ------------------------------------PGPE-----------------VP---------------KD---A 319 (497)
T ss_dssp ------------------------------------CCCC-----------------CC---------------TT---S
T ss_pred ------------------------------------CCCC-----------------cc---------------cc---c
Confidence 0010 00 00 0
Q ss_pred eCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCccccccccccccCC-CCC---
Q 001973 309 KGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR------LGLNTRVLFNIITDSG-GSSWMFENRVPHMLDN-DYT--- 377 (988)
Q Consensus 309 ~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~------~Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~-~~~--- 377 (988)
..+..+.+|.+.|.+.+.++.+++|.+.+.++ .++|...+.++++.|. -.|++++...+.+... +..
T Consensus 320 --~~~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~ 397 (497)
T 2p4q_A 320 --VKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLL 397 (497)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHHHHHHHCTTCSCGG
T ss_pred --ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhhh
Confidence 01345688999999999999999999999877 6899999999999775 5677766443333221 111
Q ss_pred --CCc--hhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 378 --PYS--ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 378 --~~~--~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
+.| .+.......+.++..|.+.|+|+|.+.++...|+.-.. +.-.+.+++..+...|..
T Consensus 398 ~~~~f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~----~~~~a~liqa~Rd~FG~H 460 (497)
T 2p4q_A 398 FNKFFADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRS----ERLPANLLQAQRDYFGAH 460 (497)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTC----SSCTHHHHHHHHHHHSCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc----CCchhHHHHHHHHhcCCc
Confidence 112 23344446788999999999999999999997665432 233456888888887764
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.9e-05 Score=87.33 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=81.4
Q ss_pred CCeEEEEccchHHHHHHHHHH-h-CCCeEE-EEeCChhHHHHHHhc-C--CcccCCHHHHhc--cCcEEEEEcCChHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLL-R-SNFTVI-GYDVYRPTLTKFQNV-G--GLIANSPAEAAK--DVGVLVIMVTNEAQAE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~-~-~G~~V~-v~dr~~~~~~~l~~~-G--~~~~~s~~e~~~--~aDvV~l~vp~~~~~~ 217 (988)
++||||||+|.||..++..|. + .+++|. ++|+++++.+.+.+. | ....++++++++ +.|+|++|+|+....+
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 102 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHAD 102 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHHH
Confidence 469999999999999999998 4 467755 799999999887654 6 677899999987 4899999999987665
Q ss_pred HHHccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHhc
Q 001973 218 SVLYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQFE 257 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~~ 257 (988)
.+. . .+..| .+++..- +..+..++++.+...+.
T Consensus 103 ~~~----~---al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 137 (357)
T 3ec7_A 103 VAV----A---ALNANKYVFCEKPLAVTAADCQRVIEAEQKN 137 (357)
T ss_dssp HHH----H---HHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred HHH----H---HHHCCCCEEeecCccCCHHHHHHHHHHHHHh
Confidence 554 2 22334 4555553 67788888888877663
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-05 Score=86.68 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=81.3
Q ss_pred CeEEEEccchHHHHHHHHHH-h-CCCeEE-EEeCChhHHHHHHhc-C--CcccCCHHHHhcc--CcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLL-R-SNFTVI-GYDVYRPTLTKFQNV-G--GLIANSPAEAAKD--VGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~-~-~G~~V~-v~dr~~~~~~~l~~~-G--~~~~~s~~e~~~~--aDvV~l~vp~~~~~~~ 218 (988)
+||||||+|.||..++..|. + .++++. ++|+++++.+.+.+. | ....+++++++++ +|+|++|+|+....+.
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 82 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHESS 82 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHHH
Confidence 59999999999999999998 5 467755 789999999887764 6 5678999999876 8999999999876655
Q ss_pred HHccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHhc
Q 001973 219 VLYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQFE 257 (988)
Q Consensus 219 vl~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~~ 257 (988)
+. ..+..| ++++..- +..+..++++.+...+.
T Consensus 83 ~~-------~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~ 116 (344)
T 3mz0_A 83 VL-------KAIKAQKYVFCEKPLATTAEGCMRIVEEEIKV 116 (344)
T ss_dssp HH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHH
T ss_pred HH-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 54 223344 4555554 67788899988877663
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.99 E-value=3.4e-05 Score=86.91 Aligned_cols=112 Identities=12% Similarity=0.153 Sum_probs=82.1
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC-CCeE-EEEeCChhHHHHHHhc-C----CcccCCHHHHhc--cCcEEEEEcCChHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS-NFTV-IGYDVYRPTLTKFQNV-G----GLIANSPAEAAK--DVGVLVIMVTNEAQ 215 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~-G----~~~~~s~~e~~~--~aDvV~l~vp~~~~ 215 (988)
+++||||||+|.||..++..|.+. ++++ .++|+++++.+.+.+. | ....++++++++ ++|+|++|+|+...
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 84 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLH 84 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHH
Confidence 347999999999999999999885 5664 6899999998877654 5 356789999886 58999999998775
Q ss_pred HHHHHccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHhcCCCceEec
Q 001973 216 AESVLYGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQFEGKDLKLVD 265 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~~~~g~~~ld 265 (988)
.+.+. ..+..|+ +++.. .+.....++++.+...+ .+..+..
T Consensus 85 ~~~~~-------~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~--~g~~~~~ 127 (362)
T 1ydw_A 85 VEWAI-------KAAEKGKHILLEKPVAMNVTEFDKIVDACEA--NGVQIMD 127 (362)
T ss_dssp HHHHH-------HHHTTTCEEEECSSCSSSHHHHHHHHHHHHT--TTCCEEE
T ss_pred HHHHH-------HHHHCCCeEEEecCCcCCHHHHHHHHHHHHH--cCCEEEE
Confidence 54443 2344565 45543 36677888888887766 3444443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=3.3e-05 Score=85.01 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=68.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHH----Hhc------C--CcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKF----QNV------G--GLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l----~~~------G--~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+|.||.+++..|+..|+ +|.++|+++++++.. .+. . +..+++. +++++||+||++++.+
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p 81 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP 81 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 699999999999999999999997 999999998766542 211 1 2234666 7789999999998665
Q ss_pred H---------------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHH
Q 001973 214 A---------------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERR 253 (988)
Q Consensus 214 ~---------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~ 253 (988)
. .++++. +.+.+.. ++.+++.. |++.+..-.+...
T Consensus 82 ~~~g~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~vi~~-tNPv~~~t~~~~~ 131 (309)
T 1ur5_A 82 RKPGMSREDLIKVNADITRACI---SQAAPLS-PNAVIIMV-NNPLDAMTYLAAE 131 (309)
T ss_dssp -------CHHHHHHHHHHHHHH---HHHGGGC-TTCEEEEC-CSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH---HHHHhhC-CCeEEEEc-CCchHHHHHHHHH
Confidence 3 122333 3344443 66666664 5566665444443
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.2e-05 Score=86.72 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=68.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHH----HHHhc-----CCcccCCHHHHhccCcEEEEEcCCh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLT----KFQNV-----GGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~----~l~~~-----G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
+++||+|||+|.+|.+++..|+..|+ +|.++|+++++++ ++.+. ..++..+..+++++||+||++++.+
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p 85 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN 85 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 45799999999999999999999997 9999999987643 23221 1112223466789999999999876
Q ss_pred HH---------------HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHH
Q 001973 214 AQ---------------AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRL 254 (988)
Q Consensus 214 ~~---------------~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l 254 (988)
.. ++++. +.+.++ .++.+++.. |++++..-.+....
T Consensus 86 ~k~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~viv~-tNPv~~~~~~~~k~ 136 (318)
T 1y6j_A 86 RKPGETRLDLAKKNVMIAKEVT---QNIMKY-YNHGVILVV-SNPVDIITYMIQKW 136 (318)
T ss_dssp -----CHHHHHHHHHHHHHHHH---HHHHHH-CCSCEEEEC-SSSHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHhhHHHHHHHH---HHHHHh-CCCcEEEEe-cCcHHHHHHHHHHH
Confidence 41 23333 345555 466777764 77777766655543
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=3.2e-05 Score=85.37 Aligned_cols=108 Identities=13% Similarity=0.163 Sum_probs=72.1
Q ss_pred hcCCCCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHh------cCCcccCCHHHHhccCcEEEE
Q 001973 141 AKSNSVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQN------VGGLIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 141 m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~------~G~~~~~s~~e~~~~aDvV~l 208 (988)
|++|++|||+|||+|.+|.+++..|+..|+ +|.+||+++++++. +.+ ....+..+..+++++||+||+
T Consensus 1 m~~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi 80 (317)
T 3d0o_A 1 MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVI 80 (317)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEE
Confidence 334556899999999999999999998884 89999999876653 222 122233355778999999999
Q ss_pred EcCChH---------------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHH
Q 001973 209 MVTNEA---------------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERR 253 (988)
Q Consensus 209 ~vp~~~---------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~ 253 (988)
+.+.+. .++++. +.+.++ .++.+++.. |.+.+..-.+...
T Consensus 81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~viv~-tNPv~~~t~~~~k 135 (317)
T 3d0o_A 81 CAGAAQKPGETRLDLVSKNLKIFKSIV---GEVMAS-KFDGIFLVA-TNPVDILAYATWK 135 (317)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHH---HHHHHT-TCCSEEEEC-SSSHHHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHH---HHHHHh-CCCcEEEEe-cCcHHHHHHHHHH
Confidence 997653 223333 344444 566777774 5666665444443
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.99 E-value=9.1e-06 Score=89.39 Aligned_cols=97 Identities=21% Similarity=0.283 Sum_probs=74.3
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChhHHHHHHh-----cCC--cccCCHHHHhccCcEEEEEcCChH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRPTLTKFQN-----VGG--LIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~-----~G~--~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
+...+|+|||+|.||..++..|.+. ..+|++|||+ +.+++.+ .|+ ..+ +++++++++|+|++|+|...
T Consensus 119 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~~ 195 (313)
T 3hdj_A 119 PRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRSTT 195 (313)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCSS
T ss_pred CCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCCC
Confidence 3457999999999999999999873 4689999999 5444443 255 345 99999999999999999753
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHH
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLER 252 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~ 252 (988)
.++. .+.+++|+.|++.++..|+. +++..
T Consensus 196 ---pvl~-----~~~l~~G~~V~~vGs~~p~~-~El~~ 224 (313)
T 3hdj_A 196 ---PLFA-----GQALRAGAFVGAIGSSLPHT-RELDD 224 (313)
T ss_dssp ---CSSC-----GGGCCTTCEEEECCCSSTTC-CCCCH
T ss_pred ---cccC-----HHHcCCCcEEEECCCCCCch-hhcCH
Confidence 2331 34688999999999988864 44433
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.1e-05 Score=89.99 Aligned_cols=181 Identities=12% Similarity=0.092 Sum_probs=114.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc---chHHHHHHhHHHHHHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL---HFLNAFIQNLGIALDMAK 77 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~---f~l~l~~KDl~la~~~a~ 77 (988)
|+||++.+++++.+.|+..++++.|+|++.++++++..+.- . .|.| |.-.-+-||..+....|+
T Consensus 216 l~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~ri----~---------~l~pG~G~GG~C~pkD~~~L~~~a~ 282 (431)
T 3ojo_A 216 LMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRV----N---------IHQPGPGVGGHCLAVDPYFIIAKDP 282 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTC----C---------CCCCCSCCCCCCBCSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCCCc----c---------cCCCCCCccccchhhhHHHHHHHHH
Confidence 57999999999999999999999999999999999765421 1 1222 222334588888888888
Q ss_pred hcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccch-
Q 001973 78 TLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGA- 156 (988)
Q Consensus 78 ~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~- 156 (988)
+.| ++..++.+.=+.... -+++.+.+..+ ..+..||+|+|+-.
T Consensus 283 ~~~---~li~~~~~iN~~~~~---------~v~~~~~~~l~------------------------~~~~~~v~vlGlafK 326 (431)
T 3ojo_A 283 ENA---KLIQTGREINNSMPA---------YVVDTTKQIIK------------------------ALSGNKVTVFGLTYK 326 (431)
T ss_dssp -CC---HHHHHHHHHHHTHHH---------HHHHHHHHHHH------------------------HSSCCEEEEECCCSS
T ss_pred HHh---HHHHHHHHHHHHhHH---------HHHHHHHHHhh------------------------hcCCCEEEEEeeeeC
Confidence 776 555554443221110 12222222110 01225899999753
Q ss_pred ---------HHHHHHHHHHhC-CCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 157 ---------MGFGMATHLLRS-NFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 157 ---------mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
-...++..|.+. |.+|.+||...... ..+.++.++++++|.|++++..+. .+.+-+ +.+
T Consensus 327 ~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~--------~~~~~~~~~~~~ad~vvi~t~~~~-f~~~d~--~~~ 395 (431)
T 3ojo_A 327 GDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD--------FVEHDMSHAVKDASLVLILSDHSE-FKNLSD--SHF 395 (431)
T ss_dssp TTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT--------TBCSTTHHHHTTCSEEEECSCCGG-GTSCCG--GGG
T ss_pred CCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc--------cccCCHHHHHhCCCEEEEecCCHH-HhccCH--HHH
Confidence 468899999999 99999999764431 346788999999999999999876 332211 223
Q ss_pred hhhCCCCCEEEecCCCC
Q 001973 227 VSALSSGASIILSSTVS 243 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~ 243 (988)
..+ ++.+|+|.-+..
T Consensus 396 -~~~-~~~~i~D~r~~~ 410 (431)
T 3ojo_A 396 -DKM-KHKVIFDTKNVV 410 (431)
T ss_dssp -TTC-SSCEEEESSCCC
T ss_pred -HhC-CCCEEEECCCCC
Confidence 323 367999988775
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=88.52 Aligned_cols=105 Identities=12% Similarity=0.061 Sum_probs=78.0
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC-Ce-EEEEeCChhHHHHHHhc-CCc-ccCCHHHHhc--cCcEEEEEcCChHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN-FT-VIGYDVYRPTLTKFQNV-GGL-IANSPAEAAK--DVGVLVIMVTNEAQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G-~~-V~v~dr~~~~~~~l~~~-G~~-~~~s~~e~~~--~aDvV~l~vp~~~~~~~ 218 (988)
+++||||||+|.||..++..|.+.+ .+ +.++|+++++.+.+.+. |+. ..++++++++ +.|+|++|+|+....+.
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~ 83 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKV 83 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHH
T ss_pred CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 4579999999999999999998764 45 45789999988777654 654 6789999998 78999999999876555
Q ss_pred HHccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 219 VLYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 219 vl~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
+. ..+..| .+++..- +..+..++++.+...+
T Consensus 84 ~~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 116 (329)
T 3evn_A 84 AK-------AALLAGKHVLVEKPFTLTYDQANELFALAES 116 (329)
T ss_dssp HH-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred HH-------HHHHCCCeEEEccCCcCCHHHHHHHHHHHHH
Confidence 43 123344 4555553 6678888888887766
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.7e-06 Score=90.01 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=78.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.+++.|||+|.||.+++..|++.|.+|+++||++++.+++.+.|+... +++++ .++|+||.|+|.....+..+ ..+.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l-~~~~ 194 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPL-NKEV 194 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSS-CHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCC-ChHH
Confidence 358999999999999999999999999999999999988875564432 23332 38999999998653211111 1112
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
+.+.++++.+++|+... | .+. +.+...+ +|...+++
T Consensus 195 l~~~l~~~~~v~D~vY~-P-~T~-ll~~A~~--~G~~~~~G 230 (269)
T 3phh_A 195 LKGYFKEGKLAYDLAYG-F-LTP-FLSLAKE--LKTPFQDG 230 (269)
T ss_dssp HHHHHHHCSEEEESCCS-S-CCH-HHHHHHH--TTCCEECS
T ss_pred HHhhCCCCCEEEEeCCC-C-chH-HHHHHHH--CcCEEECC
Confidence 22245678999999987 4 443 5555555 45555543
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.1e-05 Score=90.96 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=80.3
Q ss_pred CCCCeEEEEccchHHH-HHHHHHHhC-CCe-EEEEeCChhHHHHHHhc-CCc-----ccCCHHHHhc--cCcEEEEEcCC
Q 001973 144 NSVTRVGFIGLGAMGF-GMATHLLRS-NFT-VIGYDVYRPTLTKFQNV-GGL-----IANSPAEAAK--DVGVLVIMVTN 212 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~-~lA~~L~~~-G~~-V~v~dr~~~~~~~l~~~-G~~-----~~~s~~e~~~--~aDvV~l~vp~ 212 (988)
++++||||||+|.||. .++..|.+. +++ |.++|+++++.+.+.+. |+. ..++++++++ +.|+|++|+|+
T Consensus 81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~ 160 (433)
T 1h6d_A 81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN 160 (433)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCc
Confidence 3457999999999997 899999875 466 46899999998887654 654 5788999887 78999999999
Q ss_pred hHHHHHHHccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHh
Q 001973 213 EAQAESVLYGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~ 256 (988)
....+.+. ..+..|+ +++.. .+..+..++++.+...+
T Consensus 161 ~~h~~~~~-------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~ 199 (433)
T 1h6d_A 161 SLHAEFAI-------RAFKAGKHVMCEKPMATSVADCQRMIDAAKA 199 (433)
T ss_dssp GGHHHHHH-------HHHHTTCEEEECSSCCSSHHHHHHHHHHHHH
T ss_pred hhHHHHHH-------HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 87655554 2233454 56654 46678888888887766
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.8e-05 Score=91.96 Aligned_cols=93 Identities=17% Similarity=0.097 Sum_probs=78.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..++|+|||+|.||..+|+.+...|.+|++||+++.+.+...+.|+.. .++.++++.+|+||+|+++...+. .
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt~~~i~------~ 345 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGNKDIIM------L 345 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSSSCSBC------H
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCCHHHHH------H
Confidence 457999999999999999999999999999999999988888888864 578888999999999998765221 1
Q ss_pred chhhhCCCCCEEEecCCCCH
Q 001973 225 GAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p 244 (988)
...+.++++.++++.+....
T Consensus 346 ~~l~~mk~ggilvnvG~~~~ 365 (494)
T 3ce6_A 346 EHIKAMKDHAILGNIGHFDN 365 (494)
T ss_dssp HHHHHSCTTCEEEECSSSGG
T ss_pred HHHHhcCCCcEEEEeCCCCC
Confidence 34567889999999987653
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2e-05 Score=87.07 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=56.4
Q ss_pred CCCCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc------CCcccCCHHHHhccCcEEEEEc
Q 001973 143 SNSVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV------GGLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~------G~~~~~s~~e~~~~aDvV~l~v 210 (988)
++..+||+|||+|.||.++|..|+..|+ +|.+||+++++++. |... +....++..+++++||+||++.
T Consensus 2 ~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~a 81 (326)
T 3pqe_A 2 NKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICA 81 (326)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEec
Confidence 4456899999999999999999999997 89999999988765 5442 2233334457789999999998
Q ss_pred CCh
Q 001973 211 TNE 213 (988)
Q Consensus 211 p~~ 213 (988)
+.+
T Consensus 82 g~p 84 (326)
T 3pqe_A 82 GAN 84 (326)
T ss_dssp SCC
T ss_pred ccC
Confidence 754
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.9e-05 Score=86.56 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=77.4
Q ss_pred CCCeEEEEccchHHHH-HHHHHHhC-CCeE-EEEeCChhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFG-MATHLLRS-NFTV-IGYDVYRPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~-lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~v 219 (988)
+++||||||+|.||.. .+..|.+. +++| .++|++++++.. ...+....+|++++++ +.|+|++|+|+....+.+
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~ 84 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLA 84 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHH
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence 4579999999999997 67777765 6776 478999987652 2236677899999998 789999999998766555
Q ss_pred HccccchhhhCCCCCEEEecC--CCCHHHHHHHHHHHHh
Q 001973 220 LYGDLGAVSALSSGASIILSS--TVSPGFVSQLERRLQF 256 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~s--t~~p~~~~~l~~~l~~ 256 (988)
. ..+..|+-|+... +..+..++++.+...+
T Consensus 85 ~-------~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~ 116 (364)
T 3e82_A 85 R-------LALNAGKHVVVDKPFTLDMQEARELIALAEE 116 (364)
T ss_dssp H-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred H-------HHHHCCCcEEEeCCCcCCHHHHHHHHHHHHH
Confidence 4 2334555555444 6778888888887766
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=6e-06 Score=89.03 Aligned_cols=110 Identities=10% Similarity=0.092 Sum_probs=76.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCC-cccCCHHHHhccCcEEEEEcCChHH--HHHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGG-LIANSPAEAAKDVGVLVIMVTNEAQ--AESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~-~~~~s~~e~~~~aDvV~l~vp~~~~--~~~vl~~ 222 (988)
+++.|||+|.||.+++..|++.|. +|+++||++++.+++..... ...+++.+++.++|+||.|+|.... ....+
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l-- 195 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVI-- 195 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCSS--
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCC--
Confidence 489999999999999999999998 89999999998877654321 1233556667899999999987531 11111
Q ss_pred ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec
Q 001973 223 DLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD 265 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld 265 (988)
-...++++.+++|++.. |..+ .+.+...+ +|...++
T Consensus 196 ---~~~~l~~~~~V~D~vY~-P~~T-~ll~~A~~--~G~~~~~ 231 (277)
T 3don_A 196 ---SLNRLASHTLVSDIVYN-PYKT-PILIEAEQ--RGNPIYN 231 (277)
T ss_dssp ---CCTTCCSSCEEEESCCS-SSSC-HHHHHHHH--TTCCEEC
T ss_pred ---CHHHcCCCCEEEEecCC-CCCC-HHHHHHHH--CcCEEeC
Confidence 12456789999999987 4333 35555555 4555444
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.9e-06 Score=92.16 Aligned_cols=113 Identities=16% Similarity=0.131 Sum_probs=83.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHc------------------------CCCHHHHHHHHhhcc-CCchhhhccccccccC
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQF------------------------GIHPWVLYDIISNAA-GNSWIFKNYIPNLLRG 55 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~------------------------Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~ 55 (988)
++||.+.++.+++++|++.|++++ |+|++.+.++++.|+ .+||+++.....+. +
T Consensus 211 l~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~-~ 289 (358)
T 4e21_A 211 MVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALL-D 289 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHh-h
Confidence 479999999999999999999998 999999999999987 89999998765443 3
Q ss_pred CCCcc-hHHHHHHhH---HHHHHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCch-hHHHHHHhhhcc
Q 001973 56 DAKLH-FLNAFIQNL---GIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNP-PLVKVWENVLGV 119 (988)
Q Consensus 56 ~~~~f-~l~l~~KDl---~la~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~-~~~~~~~~~~g~ 119 (988)
+.. + .+....||. +++++.|.+.|+|+|+.+.+ +|.+...+ ++.+++ .++..+++.+|.
T Consensus 290 ~p~-~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~a--l~~~~~s~--~~~~~~~~l~~a~r~~fG~ 353 (358)
T 4e21_A 290 SPD-LQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSA--LYERFSSR--GEDDFANRLLSAMRYEFGG 353 (358)
T ss_dssp CTT-CTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHH--HHHHHHHT--TTTHHHHHHHHHHC-----
T ss_pred CCC-hHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHH--HHHHHHHC--CCcccHHHHHHHHHHhcCC
Confidence 311 2 244555666 78999999999999999876 44444443 555665 488888877764
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.88 E-value=4.9e-05 Score=84.62 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=79.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCC---Ce-EEEEeCChhHHHHHHhc-CC-cccCCHHHHhc--cCcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN---FT-VIGYDVYRPTLTKFQNV-GG-LIANSPAEAAK--DVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G---~~-V~v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~--~aDvV~l~vp~~~~~~~ 218 (988)
+||||||+|.||..++..|.+.+ ++ |.++|+++++.+++.+. |+ ...+|++++++ +.|+|++|+|+....+.
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~ 82 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAA 82 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHHH
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 69999999999999999998764 34 66789999999887654 66 46889999987 68999999999876655
Q ss_pred HHccccchhhhCCCC-CEEEec-CCCCHHHHHHHHHHHHh
Q 001973 219 VLYGDLGAVSALSSG-ASIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 219 vl~~~~~i~~~l~~g-~ivId~-st~~p~~~~~l~~~l~~ 256 (988)
+. . .+..| ++++.. -+..+..++++.+...+
T Consensus 83 ~~----~---al~~GkhVl~EKP~a~~~~e~~~l~~~a~~ 115 (334)
T 3ohs_X 83 VM----L---CLAAGKAVLCEKPMGVNAAEVREMVTEARS 115 (334)
T ss_dssp HH----H---HHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HH----H---HHhcCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 54 2 23334 456654 36678888888887766
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.87 E-value=1.2e-05 Score=77.63 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=75.2
Q ss_pred CeEEEEcc----chHHHHHHHHHHhCCCeEEEEeCChhH-HHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGL----GAMGFGMATHLLRSNFTVIGYDVYRPT-LTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~----G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
.+|+|||+ |.+|..++++|.+.||+ +|++|+.+ .+++ .|.++..|+.|+.+..|++++++|... +.+++
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp~~~-~~~v~- 87 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRPPSA-LMDHL- 87 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSCHHH-HTTTH-
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeCHHH-HHHHH-
Confidence 58999999 89999999999999997 77888874 2222 477888899998889999999999844 55555
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD 265 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld 265 (988)
+++.+.- .+.+|+..++. .+++.+...+ .|++++.
T Consensus 88 --~~~~~~g-i~~i~~~~g~~----~~~~~~~a~~--~Gir~vg 122 (140)
T 1iuk_A 88 --PEVLALR-PGLVWLQSGIR----HPEFEKALKE--AGIPVVA 122 (140)
T ss_dssp --HHHHHHC-CSCEEECTTCC----CHHHHHHHHH--TTCCEEE
T ss_pred --HHHHHcC-CCEEEEcCCcC----HHHHHHHHHH--cCCEEEc
Confidence 3444332 34577665554 3556666655 5677763
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=2.4e-05 Score=85.19 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=53.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc------C--CcccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV------G--GLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~------G--~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
|||+|||+|.||+++|..|+.+|+ +|.+||+++++++. +.+. . +..+++ .+++++||+||++.+.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 599999999999999999999998 99999999988652 2221 1 223445 7889999999999876
Q ss_pred h
Q 001973 213 E 213 (988)
Q Consensus 213 ~ 213 (988)
+
T Consensus 80 ~ 80 (294)
T 1oju_A 80 A 80 (294)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00097 Score=76.19 Aligned_cols=187 Identities=13% Similarity=0.124 Sum_probs=131.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc---chHHHHHHhHHHHHHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL---HFLNAFIQNLGIALDMAK 77 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~---f~l~l~~KDl~la~~~a~ 77 (988)
++.|.+.+++++.+-|-..++++.|+|...+++++..-.-.++ .. |.| |.-.-+-||..+....|+
T Consensus 229 l~eN~~ravnIa~~NEla~ice~~GiDv~eV~~a~~~d~rig~-------~~----l~PG~G~GG~CipkD~~~L~~~a~ 297 (444)
T 3vtf_A 229 YASNVFLALKISFANEVGLLAKRLGVDTYRVFEAVGLDKRIGR-------HY----FGAGLGFGGSCFPKDTLAFIRFGE 297 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTSCS-------TT----CCCSSCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCCCCCC-------CC----CCCCCCCCCcccCcCHHHHHHHHH
Confidence 4689999999999999999999999999999999864321111 11 122 223345699999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccc--
Q 001973 78 TLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLG-- 155 (988)
Q Consensus 78 ~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G-- 155 (988)
+.|+++++..++++.=+..... +++.+.+..+ ..+..||+|+|+-
T Consensus 298 ~~g~~~~li~a~~~iN~~~~~~---------vv~~l~~~~~------------------------~l~g~~V~vlGlafK 344 (444)
T 3vtf_A 298 SLGLEMAISKAVLRVNEYMPRY---------AVQLLEERLG------------------------GLRGRHVGVLGLAFK 344 (444)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHH---------HHHHHHHHHT------------------------CCTTCEEEEECCSSS
T ss_pred hcCCCHHHHHhhHHHHHHHHHH---------HHHHHHHHcc------------------------ccCCCEEEEEeeecC
Confidence 9999999888877654432211 3333333211 0122489999875
Q ss_pred --------hHHHHHHHHHHhCCCeEEEEeCCh-hHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 156 --------AMGFGMATHLLRSNFTVIGYDVYR-PTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 156 --------~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
.=...++..|.+.|.+|.+||... +.........+..++++.++++++|.|++++..++ .+.+
T Consensus 345 ~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t~h~e-f~~l------- 416 (444)
T 3vtf_A 345 PNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIATAWPQ-YEGL------- 416 (444)
T ss_dssp SSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECSCCGG-GGGS-------
T ss_pred CCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEccCCHH-HhCC-------
Confidence 237789999999999999999764 22233333456778999999999999999998865 2211
Q ss_pred hhhCCCCCEEEecCCC
Q 001973 227 VSALSSGASIILSSTV 242 (988)
Q Consensus 227 ~~~l~~g~ivId~st~ 242 (988)
--++.+|+|.-++
T Consensus 417 ---d~~~~vv~D~Rni 429 (444)
T 3vtf_A 417 ---DYRGKVVVDGRYV 429 (444)
T ss_dssp ---CCTTCEEEESSCC
T ss_pred ---CcCCCEEEECCCC
Confidence 1146799997665
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.87 E-value=2.1e-05 Score=91.02 Aligned_cols=109 Identities=16% Similarity=0.069 Sum_probs=82.1
Q ss_pred CCCCeEEEEcc----chHHHHHHHHHHhC--CCeE-EEEeCChhHHHHHHhc-CCc---ccCCHHHHhc--cCcEEEEEc
Q 001973 144 NSVTRVGFIGL----GAMGFGMATHLLRS--NFTV-IGYDVYRPTLTKFQNV-GGL---IANSPAEAAK--DVGVLVIMV 210 (988)
Q Consensus 144 ~~~~kIgiIG~----G~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~-G~~---~~~s~~e~~~--~aDvV~l~v 210 (988)
|+++||||||+ |.||..++..|.+. +++| .++|+++++.+.+.+. |+. ..++++++++ +.|+|++|+
T Consensus 18 m~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~t 97 (438)
T 3btv_A 18 AAPIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAI 97 (438)
T ss_dssp -CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECS
T ss_pred cCCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeC
Confidence 35679999999 99999999999987 6775 6899999998887764 654 6789999986 689999999
Q ss_pred CChHHHHHHHccccchhhhC----CCCCEEEec-CCCCHHHHHHHHHHHHh
Q 001973 211 TNEAQAESVLYGDLGAVSAL----SSGASIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~l----~~g~ivId~-st~~p~~~~~l~~~l~~ 256 (988)
|+....+.+. ..++.- +..++++.. .+..+..++++.+...+
T Consensus 98 p~~~H~~~~~----~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~ 144 (438)
T 3btv_A 98 QVASHYEVVM----PLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAE 144 (438)
T ss_dssp CHHHHHHHHH----HHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHT
T ss_pred CcHHHHHHHH----HHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHH
Confidence 9887665554 122211 013577775 46678888888887765
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.3e-05 Score=85.20 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=53.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHH----HHHhc------CCc--ccCCHHHHhccCcEEEEEcC
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLT----KFQNV------GGL--IANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~----~l~~~------G~~--~~~s~~e~~~~aDvV~l~vp 211 (988)
+++||+|||+|.||.++|..|+..|+ +|.+||+++++++ ++.+. ... .+++. +++++||+||++.+
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag 84 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAG 84 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCS
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccC
Confidence 34799999999999999999999999 9999999988764 23221 222 24565 78999999999986
Q ss_pred Ch
Q 001973 212 NE 213 (988)
Q Consensus 212 ~~ 213 (988)
.+
T Consensus 85 ~p 86 (324)
T 3gvi_A 85 VP 86 (324)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.7e-06 Score=87.62 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=69.4
Q ss_pred eEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+|+|||+|.||.+++..|.+.|. +|+++||++++.+++.+. +....+++.+.++++|+||.|+|....-..... .
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i---~ 186 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPV---S 186 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSC---C
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCC---C
Confidence 79999999999999999999998 899999999998887653 222345677888999999999985321000000 0
Q ss_pred hhhhCCCCCEEEecCCC
Q 001973 226 AVSALSSGASIILSSTV 242 (988)
Q Consensus 226 i~~~l~~g~ivId~st~ 242 (988)
...++++.+|+|+...
T Consensus 187 -~~~l~~~~~V~Divy~ 202 (253)
T 3u62_A 187 -DDSLKNLSLVYDVIYF 202 (253)
T ss_dssp -HHHHTTCSEEEECSSS
T ss_pred -HHHhCcCCEEEEeeCC
Confidence 2345689999999887
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.7e-05 Score=87.96 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=75.2
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..++++|||+|.+|..+|+.+...|.+|+++|+++.+..+....|... .++.++++.+|+|+++.++.. ++. .
T Consensus 246 ~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeElL~~ADIVv~atgt~~----lI~--~ 318 (464)
T 3n58_A 246 AGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDAASTADIVVTTTGNKD----VIT--I 318 (464)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECCSSSS----SBC--H
T ss_pred cCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHHHhhCCEEEECCCCcc----ccC--H
Confidence 457999999999999999999999999999999998766666667765 478999999999999876533 221 2
Q ss_pred chhhhCCCCCEEEecCCCC
Q 001973 225 GAVSALSSGASIILSSTVS 243 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~ 243 (988)
+....+++|.++|+++...
T Consensus 319 e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 319 DHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp HHHHHSCTTEEEEECSSST
T ss_pred HHHhcCCCCeEEEEcCCCC
Confidence 4456789999999998765
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.84 E-value=5.7e-05 Score=84.74 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCCeEEEEccchHHHH-HHHHHHhC-CCeE-EEEeCChhHHHHHHhcCCcccCCHHHHhcc--CcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFG-MATHLLRS-NFTV-IGYDVYRPTLTKFQNVGGLIANSPAEAAKD--VGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~-lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~--aDvV~l~vp~~~~~~~v 219 (988)
+++||||||+|.||.. .+..|.+. +++| .++|+++++.++ ...+....+|+++++++ .|+|++|+|+....+.+
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~ 84 (352)
T 3kux_A 6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLA 84 (352)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-TCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence 3579999999999997 78888776 6775 478999988762 12256778999999875 89999999998766555
Q ss_pred HccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 220 LYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 220 l~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
. ..+..| ++++..- +..+..++++.+...+
T Consensus 85 ~-------~al~aGkhV~~EKPla~~~~e~~~l~~~a~~ 116 (352)
T 3kux_A 85 Q-------SALAAGKHVVVDKPFTVTLSQANALKEHADD 116 (352)
T ss_dssp H-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred H-------HHHHCCCcEEEECCCcCCHHHHHHHHHHHHH
Confidence 4 223344 4666655 6778888888887766
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.84 E-value=4.7e-05 Score=88.99 Aligned_cols=106 Identities=18% Similarity=0.090 Sum_probs=82.8
Q ss_pred CCCCeEEEEcc----chHHHHHHHHHHhC--CCeE-EEEeCChhHHHHHHhc-CCc---ccCCHHHHhc--cCcEEEEEc
Q 001973 144 NSVTRVGFIGL----GAMGFGMATHLLRS--NFTV-IGYDVYRPTLTKFQNV-GGL---IANSPAEAAK--DVGVLVIMV 210 (988)
Q Consensus 144 ~~~~kIgiIG~----G~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~-G~~---~~~s~~e~~~--~aDvV~l~v 210 (988)
|+++||||||+ |.||...+..|.+. +++| .++|+++++.+.+.+. |+. ..+|++++++ +.|+|++|+
T Consensus 37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~t 116 (479)
T 2nvw_A 37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV 116 (479)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcC
Confidence 45579999999 99999999999986 6775 5889999999887765 654 7889999986 689999999
Q ss_pred CChHHHHHHHccccchhhhCCCC-------CEEEec-CCCCHHHHHHHHHHHHh
Q 001973 211 TNEAQAESVLYGDLGAVSALSSG-------ASIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~l~~g-------~ivId~-st~~p~~~~~l~~~l~~ 256 (988)
|+....+.+. .. +..| .++++. .+..+..++++.+...+
T Consensus 117 p~~~H~~~~~----~a---l~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~ 163 (479)
T 2nvw_A 117 KVPEHYEVVK----NI---LEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQ 163 (479)
T ss_dssp CHHHHHHHHH----HH---HHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CcHHHHHHHH----HH---HHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 9887666554 22 2233 477776 46778888888887765
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.4e-05 Score=90.55 Aligned_cols=94 Identities=21% Similarity=0.206 Sum_probs=72.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-cCCcc------cCCHHHHhccCcEEEEEcCChHH-HH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-VGGLI------ANSPAEAAKDVGVLVIMVTNEAQ-AE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~G~~~------~~s~~e~~~~aDvV~l~vp~~~~-~~ 217 (988)
..+|+|||+|.+|..+++.+...|.+|++||+++++.+.+.+ .|... ..++.+.+.++|+||.|++.+.. ..
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~t~ 247 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAP 247 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCCCc
Confidence 369999999999999999999999999999999999888776 45542 23456778899999999865542 11
Q ss_pred HHHccccchhhhCCCCCEEEecCC
Q 001973 218 SVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st 241 (988)
.++. +...+.++++.+|||.+.
T Consensus 248 ~li~--~~~l~~mk~g~~iV~va~ 269 (377)
T 2vhw_A 248 KLVS--NSLVAHMKPGAVLVDIAI 269 (377)
T ss_dssp CCBC--HHHHTTSCTTCEEEEGGG
T ss_pred ceec--HHHHhcCCCCcEEEEEec
Confidence 1111 234566789999999983
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=6.9e-05 Score=82.66 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=53.4
Q ss_pred CCCCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHH----Hhc------CCcccCCHHHHhccCcEEEEEc
Q 001973 143 SNSVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKF----QNV------GGLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l----~~~------G~~~~~s~~e~~~~aDvV~l~v 210 (988)
+++++||+|||+|.||.++|..|+..|. +|.+||+++++.+.. .+. ..++..+..+++++||+||++.
T Consensus 3 ~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~ 82 (316)
T 1ldn_A 3 NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICA 82 (316)
T ss_dssp TTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcC
Confidence 3445799999999999999999998874 899999998765432 221 1122234567789999999997
Q ss_pred CCh
Q 001973 211 TNE 213 (988)
Q Consensus 211 p~~ 213 (988)
+.+
T Consensus 83 ~~~ 85 (316)
T 1ldn_A 83 GAN 85 (316)
T ss_dssp SCC
T ss_pred CCC
Confidence 655
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.82 E-value=4.4e-05 Score=88.41 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=55.9
Q ss_pred hHHHhhhcCCCCCeEEEEccchH-HHHHHHHHHhC-----CCeEEEEeCChhHHHHHHhc--------C----CcccCCH
Q 001973 135 LAKQITAKSNSVTRVGFIGLGAM-GFGMATHLLRS-----NFTVIGYDVYRPTLTKFQNV--------G----GLIANSP 196 (988)
Q Consensus 135 ~~~~~~m~~~~~~kIgiIG~G~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~~~--------G----~~~~~s~ 196 (988)
+..+-+||| +++||+|||+|.+ |.++|..|+.+ +++|.+||+++++++..... + +..++++
T Consensus 18 ~~~~~~m~m-~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~ 96 (472)
T 1u8x_X 18 LYFQSNMKK-KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDP 96 (472)
T ss_dssp --------C-CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCH
T ss_pred eeecccccc-CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCH
Confidence 333333433 3569999999999 66788888887 67899999999887653321 1 2345788
Q ss_pred HHHhccCcEEEEEcCChH
Q 001973 197 AEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 197 ~e~~~~aDvV~l~vp~~~ 214 (988)
.+++++||+||+++|.+.
T Consensus 97 ~eal~~AD~VViaag~~~ 114 (472)
T 1u8x_X 97 EEAFTDVDFVMAHIRVGK 114 (472)
T ss_dssp HHHHSSCSEEEECCCTTH
T ss_pred HHHHcCCCEEEEcCCCcc
Confidence 899999999999999854
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0001 Score=81.24 Aligned_cols=68 Identities=13% Similarity=0.244 Sum_probs=53.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHH----HHHhc------CCcc--cCCHHHHhccCcEEEEEcC
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLT----KFQNV------GGLI--ANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~----~l~~~------G~~~--~~s~~e~~~~aDvV~l~vp 211 (988)
+++||+|||+|.||.++|..|+..|+ +|.+||+++++++ ++.+. ...+ +++ .+++++||+||++.+
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag 82 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAG 82 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCC
Confidence 34799999999999999999999998 9999999988764 23321 2223 344 578899999999976
Q ss_pred Ch
Q 001973 212 NE 213 (988)
Q Consensus 212 ~~ 213 (988)
.+
T Consensus 83 ~p 84 (321)
T 3p7m_A 83 VP 84 (321)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.6e-05 Score=78.64 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=56.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-cCCcc----cCC---HHHH-hccCcEEEEEcCChHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-VGGLI----ANS---PAEA-AKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~G~~~----~~s---~~e~-~~~aDvV~l~vp~~~~~ 216 (988)
|||.|+|+|.+|..+|..|.+.|++|+++|+++++++.+.+ .|..+ .++ +.++ ++++|+|+++++++..-
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n 79 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN 79 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH
Confidence 58999999999999999999999999999999999998765 35432 122 2232 56899999999987643
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=97.80 E-value=1.5e-05 Score=92.54 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=76.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---hhccCCchhhhccccccccCCCCc-chHHHHH-----HhHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQ-FGIHPWVLYDII---SNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFI-----QNLG 70 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~-~Gld~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~-----KDl~ 70 (988)
|+||.+.++++++++|++.|+++ .|+|++.+.+++ +.|.++||+++.+.+.+..+|++. +.++... |+.+
T Consensus 186 mv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~~~~l~~~D~~g~~~ld~i~d~~~~kgtG 265 (484)
T 4gwg_A 186 MVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTG 265 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCCCCSSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhcCCccCCccHHHHhccccCcchH
Confidence 58999999999999999999999 999999999987 688899999999999999888876 5565554 4443
Q ss_pred -HHHHHHHhcCCCCc-HHHHHHHHH
Q 001973 71 -IALDMAKTLAFPLP-LLAVAHQQL 93 (988)
Q Consensus 71 -la~~~a~~~g~~~p-~~~~~~~~~ 93 (988)
...+.|.+.|+|+| +++++...|
T Consensus 266 ~wt~~~A~~~gvp~p~i~~av~~R~ 290 (484)
T 4gwg_A 266 KWTAISALEYGVPVTLIGEAVFARC 290 (484)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHH
Confidence 56678999999999 444444433
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=3.1e-05 Score=87.35 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=74.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..++|+|+|+|.+|..+|..|...|.+|+++|+++.+.......|... .++.++++.+|+|++|..+.. ++. .
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~atgt~~----lI~--~ 291 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITCTGNKN----VVT--R 291 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSC----SBC--H
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEECCCCcc----cCC--H
Confidence 347999999999999999999999999999999998776666667654 578999999999999743322 221 2
Q ss_pred chhhhCCCCCEEEecCCCCH
Q 001973 225 GAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p 244 (988)
+....+++|.++|+.+...+
T Consensus 292 e~l~~MK~gailINvgrg~~ 311 (435)
T 3gvp_A 292 EHLDRMKNSCIVCNMGHSNT 311 (435)
T ss_dssp HHHHHSCTTEEEEECSSTTT
T ss_pred HHHHhcCCCcEEEEecCCCc
Confidence 44567889999999987754
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0011 Score=69.01 Aligned_cols=150 Identities=14% Similarity=0.144 Sum_probs=94.8
Q ss_pred CCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcc
Q 001973 189 GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPV 268 (988)
Q Consensus 189 G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv 268 (988)
|+.++++..|+++++|++++-+|-....-.++ +.+++++++|.+|.+.+|++|-..-.+-+.+.+ .++.+.+-.=
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Ia---kkii~~lpEgAII~nTCTipp~~ly~~le~l~R--~DvgIsS~HP 202 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGR--EDLNITSYHP 202 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTC--TTSEEEECBC
T ss_pred CcEeecchHHHhcCCCEEEEecCCCCCcHHHH---HHHHhhCcCCCEEecccCCCHHHHHHHHHHhCc--ccCCeeccCC
Confidence 67789999999999999999999887555566 688999999999999999999776555554432 3343332210
Q ss_pred cCCcccccCCCeEEEEe-CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCC
Q 001973 269 SGGVKRASMGELTIMAA-GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFG-ARLGLN 346 (988)
Q Consensus 269 ~g~~~~a~~g~l~~~~g-g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la-~~~Gid 346 (988)
+..+.. .|+...--+ .+++..+++.++.+..++..|.+ +..--+.+-=...++.+...+++.+-.... +-.|.+
T Consensus 203 -aaVPgt-~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~v--PAdl~SpV~DMgs~vTAv~~AGiL~Y~~~vtkIlgAP 278 (358)
T 2b0j_A 203 -GCVPEM-KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM--PANLIGPVCDMCSAVTATVYAGLLAYRDAVTKILGAP 278 (358)
T ss_dssp -SSCTTT-CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE--EHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred -CCCCCC-CCccccccccCCHHHHHHHHHHHHHhCCCeEec--chhhccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 111111 344221111 37899999999999999999987 322211211112234444455555554343 335555
Q ss_pred H
Q 001973 347 T 347 (988)
Q Consensus 347 ~ 347 (988)
.
T Consensus 279 ~ 279 (358)
T 2b0j_A 279 A 279 (358)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.9e-05 Score=88.31 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=71.2
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcccCCHHHHhc-cCcEEEEEcCChHHHHHHHcc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAK-DVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~-~aDvV~l~vp~~~~~~~vl~~ 222 (988)
..++|+|+|+|+||..+|+.|.+.|++|+++|+++++++++.+. |+... +..+... +||+++.|.... ++.
T Consensus 172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~~-----~I~- 244 (364)
T 1leh_A 172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGA-----VLN- 244 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSC-----CBS-
T ss_pred CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchHH-----HhC-
Confidence 34799999999999999999999999999999999998877664 66554 3344444 899999885332 232
Q ss_pred ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 223 DLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
....+.+ ... +|..++..|.+..+..+.+.+
T Consensus 245 -~~~~~~l-g~~-iV~e~An~p~t~~ea~~~L~~ 275 (364)
T 1leh_A 245 -DFTIPQL-KAK-VIAGSADNQLKDPRHGKYLHE 275 (364)
T ss_dssp -TTHHHHC-CCS-EECCSCSCCBSSHHHHHHHHH
T ss_pred -HHHHHhC-CCc-EEEeCCCCCcccHHHHHHHHh
Confidence 1223444 234 455555556554455566666
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=77.37 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=61.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEE-EeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIG-YDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
||||+|+|+|.||+.+++.+.+.++++.. +|++++. ..|+.+.++++++. ++|++|-+.+ |..+...+
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~-p~a~~~~~---- 71 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFSN-PNLLFPLL---- 71 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSC-HHHHHHHH----
T ss_pred ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeCC-hHHHHHHH----
Confidence 47999999999999999999998877554 7988763 35888888998888 9999885553 33344443
Q ss_pred chhhhCCCCCEEEecCCCCH
Q 001973 225 GAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p 244 (988)
. +..|.-+|..+|.-.
T Consensus 72 ---~-l~~g~~vVigTTG~s 87 (243)
T 3qy9_A 72 ---D-EDFHLPLVVATTGEK 87 (243)
T ss_dssp ---T-SCCCCCEEECCCSSH
T ss_pred ---H-HhcCCceEeCCCCCC
Confidence 2 566666666666543
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0001 Score=82.26 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=80.6
Q ss_pred hcCCCCCeEEEEccc-hHHHHHHHHHHhC--CCeE-EEEeCChhHHHHHHhc-CC-cccCCHHHHhc--cCcEEEEEcCC
Q 001973 141 AKSNSVTRVGFIGLG-AMGFGMATHLLRS--NFTV-IGYDVYRPTLTKFQNV-GG-LIANSPAEAAK--DVGVLVIMVTN 212 (988)
Q Consensus 141 m~~~~~~kIgiIG~G-~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~--~aDvV~l~vp~ 212 (988)
|.+++++||||||+| .||...+..|.+. +.++ .++|+++++.+++.+. |. ...+|++++++ +.|+|++|+|+
T Consensus 13 ~~~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 92 (340)
T 1zh8_A 13 MKPLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV 92 (340)
T ss_dssp ---CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred cCCCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence 555667899999999 8999999999886 4564 6889999999887654 65 67899999986 58999999998
Q ss_pred hHHHHHHHccccchhhhCCCC-CEEEec-CCCCHHHHHHHHHHHHh
Q 001973 213 EAQAESVLYGDLGAVSALSSG-ASIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g-~ivId~-st~~p~~~~~l~~~l~~ 256 (988)
....+.+. ..+..| .+++.. -+.....++++.+...+
T Consensus 93 ~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 93 ELNLPFIE-------KALRKGVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp GGHHHHHH-------HHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 77555443 223344 455554 24577888888887765
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00017 Score=82.19 Aligned_cols=139 Identities=16% Similarity=0.174 Sum_probs=87.8
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhC-CCe-EEEEeCChhHHHHHHhc--C----------------------CcccCCHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRS-NFT-VIGYDVYRPTLTKFQNV--G----------------------GLIANSPA 197 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~-G~~-V~v~dr~~~~~~~l~~~--G----------------------~~~~~s~~ 197 (988)
+++.||||||+|.||..++..+.+. +.+ +.++|+++++.+.+.+. | ...++|.+
T Consensus 21 ~k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~e 100 (446)
T 3upl_A 21 GKPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDND 100 (446)
T ss_dssp TCCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHH
T ss_pred CCceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHH
Confidence 3457999999999999999998764 445 66689999998876532 4 34578999
Q ss_pred HHhc--cCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCC-CCHHHHHHHHHHHHhcCCCceEecCcccCCccc
Q 001973 198 EAAK--DVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSST-VSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKR 274 (988)
Q Consensus 198 e~~~--~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st-~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~ 274 (988)
++++ +.|+|++|+|++..-.+.. ...+..|+-|+..+. .......++.+...+. |+
T Consensus 101 eLL~d~dIDaVviaTp~p~~H~e~a------~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~--Gv------------- 159 (446)
T 3upl_A 101 LILSNPLIDVIIDATGIPEVGAETG------IAAIRNGKHLVMMNVEADVTIGPYLKAQADKQ--GV------------- 159 (446)
T ss_dssp HHHTCTTCCEEEECSCCHHHHHHHH------HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHH--TC-------------
T ss_pred HHhcCCCCCEEEEcCCChHHHHHHH------HHHHHcCCcEEecCcccCHHHHHHHHHHHHHh--CC-------------
Confidence 9987 5899999999864322222 234556766664321 1112233444444332 22
Q ss_pred ccCCCeEEEEeCC-HHHHHHHHHHHHhcCCeEEEE
Q 001973 275 ASMGELTIMAAGT-EESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 275 a~~g~l~~~~gg~-~~~~~~~~~ll~~~g~~v~~~ 308 (988)
...+..|+ +....++-.+.+.+|.+++..
T Consensus 160 -----vl~~~~gdqp~~~~eLv~~a~~~G~~~v~~ 189 (446)
T 3upl_A 160 -----IYSLGAGDEPSSCMELIEFVSALGYEVVSA 189 (446)
T ss_dssp -----CEEECTTSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -----eeeecCCcchHHHHHHHHHHHhCCCeEEEe
Confidence 22333455 344556666777788877764
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.75 E-value=7e-05 Score=82.31 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=52.2
Q ss_pred CCCCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCC--hhHHHH----HHh------cCCcc--cCCHHHHhccCcEEE
Q 001973 143 SNSVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVY--RPTLTK----FQN------VGGLI--ANSPAEAAKDVGVLV 207 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~--~~~~~~----l~~------~G~~~--~~s~~e~~~~aDvV~ 207 (988)
+++.+||+|||+|.||.++|..|+.+|+ +|++||++ +++.+. +.. ...++ +++ .+++++||+||
T Consensus 5 ~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVI 83 (315)
T 3tl2_A 5 TIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVV 83 (315)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEE
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEE
Confidence 3456799999999999999999999999 99999999 444332 221 11222 334 46789999999
Q ss_pred EEcCCh
Q 001973 208 IMVTNE 213 (988)
Q Consensus 208 l~vp~~ 213 (988)
++...+
T Consensus 84 iaag~p 89 (315)
T 3tl2_A 84 ITAGIA 89 (315)
T ss_dssp ECCSCC
T ss_pred EeCCCC
Confidence 998654
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00014 Score=83.60 Aligned_cols=106 Identities=14% Similarity=0.139 Sum_probs=80.4
Q ss_pred CCCCeEEEEccch---HHHHHHHHHHhCC-CeEE--EEeCChhHHHHHHhc-CC---cccCCHHHHhcc-------CcEE
Q 001973 144 NSVTRVGFIGLGA---MGFGMATHLLRSN-FTVI--GYDVYRPTLTKFQNV-GG---LIANSPAEAAKD-------VGVL 206 (988)
Q Consensus 144 ~~~~kIgiIG~G~---mG~~lA~~L~~~G-~~V~--v~dr~~~~~~~l~~~-G~---~~~~s~~e~~~~-------aDvV 206 (988)
|+++||||||+|. ||...+..+...+ +++. ++|+++++.+++.+. |+ ...+|++++++. .|+|
T Consensus 35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V 114 (417)
T 3v5n_A 35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAV 114 (417)
T ss_dssp CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEE
T ss_pred CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEE
Confidence 3457999999999 9999999888776 6765 679999999887654 77 578999999876 8999
Q ss_pred EEEcCChHHHHHHHccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 207 VIMVTNEAQAESVLYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 207 ~l~vp~~~~~~~vl~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
++|+|+....+.+. ..+..| .+++..- +.....++++.+...+
T Consensus 115 ~I~tp~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 159 (417)
T 3v5n_A 115 AIVTPNHVHYAAAK-------EFLKRGIHVICDKPLTSTLADAKKLKKAADE 159 (417)
T ss_dssp EECSCTTSHHHHHH-------HHHTTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHH-------HHHhCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 99999987655443 233445 4555543 6678888888887766
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=2.9e-05 Score=88.46 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=71.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccC---------------------------CHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIAN---------------------------SPAE 198 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~---------------------------s~~e 198 (988)
..+|+|||+|.+|..+++.+...|.+|+++|+++++.+.+.+.|..... ++.+
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e 251 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAA 251 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHH
Confidence 3599999999999999999999999999999999998888777876542 2567
Q ss_pred HhccCcEEEEE--cCChHHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 199 AAKDVGVLVIM--VTNEAQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 199 ~~~~aDvV~l~--vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
.+..+|+||.+ +|... ...++. ++.+..+++|.+|||++.
T Consensus 252 ~~~~aDvVI~~~~~pg~~-ap~li~--~~~l~~mk~g~vIVdva~ 293 (401)
T 1x13_A 252 QAKEVDIIVTTALIPGKP-APKLIT--REMVDSMKAGSVIVDLAA 293 (401)
T ss_dssp HHHHCSEEEECCCCTTSC-CCCCBC--HHHHHTSCTTCEEEETTG
T ss_pred HhCCCCEEEECCccCCCC-CCeeeC--HHHHhcCCCCcEEEEEcC
Confidence 77889999999 44211 001110 234566789999999885
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=3.6e-05 Score=74.64 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=72.7
Q ss_pred CCeEEEEcc----chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIGL----GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
..+|+|||+ |.+|..++++|.+.||+ +|++++.. +++ .|..+..|+.|+.+..|++++++|... +.+++
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp~~~-~~~vv- 94 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVKPKL-TMEYV- 94 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SEE--TTEECBSSGGGCSSCCSEEEECSCHHH-HHHHH-
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEeCHHH-HHHHH-
Confidence 358999999 79999999999999997 66767654 222 477888899998889999999999854 55555
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
+++...- .+.+|+..++. .+++.+.+.+ .|++++
T Consensus 95 --~~~~~~g-i~~i~~~~g~~----~~~l~~~a~~--~Gi~vv 128 (144)
T 2d59_A 95 --EQAIKKG-AKVVWFQYNTY----NREASKKADE--AGLIIV 128 (144)
T ss_dssp --HHHHHHT-CSEEEECTTCC----CHHHHHHHHH--TTCEEE
T ss_pred --HHHHHcC-CCEEEECCCch----HHHHHHHHHH--cCCEEE
Confidence 3444332 23455443332 4566666665 567766
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.72 E-value=3.6e-05 Score=86.14 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=75.4
Q ss_pred CeEEEEccchHHHHH-HHHH-Hh-CCCeEE-EEeCChhHHHHHHhc-CCcccCCHHHHhcc--CcEEEEEcCChHHHHHH
Q 001973 147 TRVGFIGLGAMGFGM-ATHL-LR-SNFTVI-GYDVYRPTLTKFQNV-GGLIANSPAEAAKD--VGVLVIMVTNEAQAESV 219 (988)
Q Consensus 147 ~kIgiIG~G~mG~~l-A~~L-~~-~G~~V~-v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~--aDvV~l~vp~~~~~~~v 219 (988)
+||||||+|.||..+ +..+ .. .+++|. ++|+++++.+...+. +....+|+++++++ .|+|++|+|+....+.+
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 82 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 82 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHHHH
T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHHHH
Confidence 699999999999964 4424 33 367766 899998876444333 67778999999876 89999999998766555
Q ss_pred HccccchhhhCCCCCEEEecC--CCCHHHHHHHHHHHHhc
Q 001973 220 LYGDLGAVSALSSGASIILSS--TVSPGFVSQLERRLQFE 257 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~s--t~~p~~~~~l~~~l~~~ 257 (988)
. ..+..|+-|+... +..+..++++.+...+.
T Consensus 83 ~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 115 (345)
T 3f4l_A 83 K-------RALEAGKNVLVEKPFTPTLAQAKELFALAKSK 115 (345)
T ss_dssp H-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred H-------HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 4 2334565555444 66788888888877663
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00013 Score=84.68 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=79.7
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC-CCeE-EEEeCChhHHHHHHh----cC---CcccC----CHHHHhc--cCcEEEEE
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS-NFTV-IGYDVYRPTLTKFQN----VG---GLIAN----SPAEAAK--DVGVLVIM 209 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~----~G---~~~~~----s~~e~~~--~aDvV~l~ 209 (988)
+++||||||+|.||...+..|.+. +++| .++|+++++.+.+.+ .| ....+ |++++++ +.|+|++|
T Consensus 19 ~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~ 98 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVS 98 (444)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEEC
T ss_pred CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEc
Confidence 457999999999999999999875 5674 688999999887654 35 45566 9999987 58999999
Q ss_pred cCChHHHHHHHccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHhc
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQFE 257 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~~ 257 (988)
+|+....+.++ ..+..|+ ++++. .+..+..++++.+...+.
T Consensus 99 tp~~~h~~~~~-------~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~ 141 (444)
T 2ixa_A 99 SPWEWHHEHGV-------AAMKAGKIVGMEVSGAITLEECWDYVKVSEQT 141 (444)
T ss_dssp CCGGGHHHHHH-------HHHHTTCEEEECCCCCSSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHH-------HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 99887665554 2233454 55554 356788888888877663
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0001 Score=82.59 Aligned_cols=107 Identities=13% Similarity=0.087 Sum_probs=76.1
Q ss_pred CCCCCeEEEEccchHHHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHhc-CC-cccCCHHHHhc--cCcEEEEEcCChHH
Q 001973 143 SNSVTRVGFIGLGAMGFG-MATHLLRS-NFTVI-GYDVYRPTLTKFQNV-GG-LIANSPAEAAK--DVGVLVIMVTNEAQ 215 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~--~aDvV~l~vp~~~~ 215 (988)
.++|+||||||+|.||.. ++..+.+. +.+|. ++|+++++++++.+. |+ ...+|++++++ +.|+|++|+|+...
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H 99 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQH 99 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGH
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchh
Confidence 345679999999999975 56777765 56754 789999999887764 66 46789999985 47999999999876
Q ss_pred HHHHHccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 216 AESVLYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
.+.+. . .+..| .+++..- +.....++++.+...+
T Consensus 100 ~~~~~----~---al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 135 (350)
T 4had_A 100 IEWSI----K---AADAGKHVVCEKPLALKAGDIDAVIAARDR 135 (350)
T ss_dssp HHHHH----H---HHHTTCEEEECSCCCSSGGGGHHHHHHHHH
T ss_pred HHHHH----H---HHhcCCEEEEeCCcccchhhHHHHHHHHHH
Confidence 65554 1 22334 3444432 4556777888777665
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00014 Score=83.03 Aligned_cols=105 Identities=16% Similarity=0.195 Sum_probs=80.3
Q ss_pred CCCeEEEEccch---HHHHHHHHHHhCC-CeEE--EEeCChhHHHHHHh-cCC---cccCCHHHHhcc-------CcEEE
Q 001973 145 SVTRVGFIGLGA---MGFGMATHLLRSN-FTVI--GYDVYRPTLTKFQN-VGG---LIANSPAEAAKD-------VGVLV 207 (988)
Q Consensus 145 ~~~kIgiIG~G~---mG~~lA~~L~~~G-~~V~--v~dr~~~~~~~l~~-~G~---~~~~s~~e~~~~-------aDvV~ 207 (988)
+++||||||+|. ||...+..+...+ +++. ++|+++++.+.+.+ .|+ ...+|+++++++ .|+|+
T Consensus 11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~ 90 (398)
T 3dty_A 11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVS 90 (398)
T ss_dssp SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEE
T ss_pred CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEE
Confidence 457999999999 9999999988766 6766 57999999988765 477 678999999875 89999
Q ss_pred EEcCChHHHHHHHccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHh
Q 001973 208 IMVTNEAQAESVLYGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 208 l~vp~~~~~~~vl~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~ 256 (988)
+|+|+....+.+. . .+..|+ +++.. -+.....++++.+...+
T Consensus 91 i~tp~~~H~~~~~----~---al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 134 (398)
T 3dty_A 91 IATPNGTHYSITK----A---ALEAGLHVVCEKPLCFTVEQAENLRELSHK 134 (398)
T ss_dssp EESCGGGHHHHHH----H---HHHTTCEEEECSCSCSCHHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHH----H---HHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 9999987665554 2 223444 44443 25678888888887766
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00018 Score=81.03 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=79.0
Q ss_pred CCCeEEEEccchHHH-HHHHHHHhCCCe-EEEEeCChhHHHHHHhc-C-CcccCCHHHHhcc--CcEEEEEcCChHHHHH
Q 001973 145 SVTRVGFIGLGAMGF-GMATHLLRSNFT-VIGYDVYRPTLTKFQNV-G-GLIANSPAEAAKD--VGVLVIMVTNEAQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~-~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~-G-~~~~~s~~e~~~~--aDvV~l~vp~~~~~~~ 218 (988)
+++||||||+|.+|. .++..+...+.+ |.++|+++++.+.+.+. | ....+|+++++++ .|+|++|+|+....+.
T Consensus 25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~ 104 (361)
T 3u3x_A 25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAEL 104 (361)
T ss_dssp -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHHH
T ss_pred cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence 457999999999994 677778778888 55789999999887765 4 5678999999875 8999999998876555
Q ss_pred HHccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 219 VLYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 219 vl~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
+. ..+..| .+++..- +.....++++.+...+
T Consensus 105 ~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 137 (361)
T 3u3x_A 105 AI-------RAMQHGKDVLVDKPGMTSFDQLAKLRRVQAE 137 (361)
T ss_dssp HH-------HHHHTTCEEEEESCSCSSHHHHHHHHHHHHT
T ss_pred HH-------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 44 223344 4555542 5667888888887665
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00012 Score=83.22 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=80.0
Q ss_pred CeEEEEccc-hHHHHHHHHHHhC-CCeE-EEEeCChhHHHHHHhc-CCcccCCHHHHhcc--CcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGLG-AMGFGMATHLLRS-NFTV-IGYDVYRPTLTKFQNV-GGLIANSPAEAAKD--VGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~G-~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~--aDvV~l~vp~~~~~~~vl 220 (988)
+||||||+| .||..++..|.+. +.++ .++|+++++.+++.+. |+...+|+++++++ .|+|++|+|+....+.+.
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~ 82 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHVV 82 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHHH
Confidence 699999999 9999999999886 4564 5789999998877654 88888999999874 899999999987655543
Q ss_pred ccccchhhhCCCCC-EEEecC-CCCHHHHHHHHHHHHhc
Q 001973 221 YGDLGAVSALSSGA-SIILSS-TVSPGFVSQLERRLQFE 257 (988)
Q Consensus 221 ~~~~~i~~~l~~g~-ivId~s-t~~p~~~~~l~~~l~~~ 257 (988)
..+..|+ +++..- +..+..++++.+...+.
T Consensus 83 -------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 114 (387)
T 3moi_A 83 -------QASEQGLHIIVEKPLTLSRDEADRMIEAVERA 114 (387)
T ss_dssp -------HHHHTTCEEEECSCCCSCHHHHHHHHHHHHHH
T ss_pred -------HHHHCCCceeeeCCccCCHHHHHHHHHHHHHh
Confidence 2233343 555543 66788888888877663
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.69 E-value=3.3e-05 Score=88.60 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=56.0
Q ss_pred CCCeEEEEccchH--HHHHHHHHHh----CCCeEEEEeCChhHHHHHHhc---------CCcccCCHHHHhccCcEEEEE
Q 001973 145 SVTRVGFIGLGAM--GFGMATHLLR----SNFTVIGYDVYRPTLTKFQNV---------GGLIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 145 ~~~kIgiIG~G~m--G~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~---------G~~~~~s~~e~~~~aDvV~l~ 209 (988)
+.|||+|||.|.| |..++..|+. .| +|++||+++++++.+... .++.++|+++++++||+||++
T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a 82 (450)
T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS 82 (450)
T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence 4579999999995 6899999986 56 999999999887665432 245678999999999999999
Q ss_pred cCCh
Q 001973 210 VTNE 213 (988)
Q Consensus 210 vp~~ 213 (988)
++..
T Consensus 83 irvG 86 (450)
T 3fef_A 83 ILPG 86 (450)
T ss_dssp CCSS
T ss_pred cccC
Confidence 9754
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.68 E-value=5.4e-05 Score=85.52 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=69.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-cCCcc------cCCHHHHhccCcEEEEEcCChHH-HH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-VGGLI------ANSPAEAAKDVGVLVIMVTNEAQ-AE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~G~~~------~~s~~e~~~~aDvV~l~vp~~~~-~~ 217 (988)
.++|+|+|+|.+|..+++.+...|++|+++||++++.+.+.+ .|... ..++.+.++.+|+||.|++.+.. ..
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~ 245 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAP 245 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccc
Confidence 369999999999999999999999999999999999887765 45432 23455778899999999986541 11
Q ss_pred HHHccccchhhhCCCCCEEEecCCC
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.++. +...+.++++.+|||.+..
T Consensus 246 ~li~--~~~l~~mk~gg~iV~v~~~ 268 (369)
T 2eez_A 246 KLVT--RDMLSLMKEGAVIVDVAVD 268 (369)
T ss_dssp CCSC--HHHHTTSCTTCEEEECC--
T ss_pred hhHH--HHHHHhhcCCCEEEEEecC
Confidence 1111 3445667889999999854
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=4.2e-05 Score=84.60 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=69.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhC-CCe-EEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS-NFT-VIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~-G~~-V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
++||+|||+|+||..++..|.+. +.+ |.++|+++++ .+. .|+...+++++++.++|+|++|+|+....+.+.
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~--- 76 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIPEQA--- 76 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH---
T ss_pred CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHH---
Confidence 46999999999999999999887 466 5688998665 222 355556778887788999999999876555443
Q ss_pred cchhhhCCCCCEEEecCCCC--HHHH-HHHHHHH
Q 001973 224 LGAVSALSSGASIILSSTVS--PGFV-SQLERRL 254 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~--p~~~-~~l~~~l 254 (988)
..+..|+-+++.++.. .... +++.+..
T Consensus 77 ----~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a 106 (320)
T 1f06_A 77 ----PKFAQFACTVDTYDNHRDIPRHRQVMNEAA 106 (320)
T ss_dssp ----HHHTTTSEEECCCCCGGGHHHHHHHHHHHH
T ss_pred ----HHHHCCCEEEECCCCcCCHHHHHHHHHHHH
Confidence 3445677777766543 2333 4444443
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00012 Score=82.29 Aligned_cols=105 Identities=11% Similarity=0.164 Sum_probs=76.3
Q ss_pred CCCeEEEEccchHHHH-HHHHHHhC-CCeE-EEEeCChhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFG-MATHLLRS-NFTV-IGYDVYRPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~-lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~v 219 (988)
+++||||||+|.||.. .+..|.+. +++| .++|+++++..+. -.+....+|++++++ +.|+|++|+|+....+.+
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~ 82 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRD-FPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHT 82 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHH-CTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHH
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh-CCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 4579999999999997 67777665 6775 5789999774321 126677899999997 689999999998766555
Q ss_pred HccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHhc
Q 001973 220 LYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQFE 257 (988)
Q Consensus 220 l~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~~ 257 (988)
. ..+..| ++++..- +.....++++.+...+.
T Consensus 83 ~-------~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~ 115 (358)
T 3gdo_A 83 M-------ACIQAGKHVVMEKPMTATAEEGETLKRAADEK 115 (358)
T ss_dssp H-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred H-------HHHHcCCeEEEecCCcCCHHHHHHHHHHHHHc
Confidence 4 223344 4555542 66788888888877663
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00035 Score=79.77 Aligned_cols=168 Identities=10% Similarity=-0.021 Sum_probs=111.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCcchHHHHHHhHHHHHHHHHhcC
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLHFLNAFIQNLGIALDMAKTLA 80 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl~la~~~a~~~g 80 (988)
|++|++.+++++.+.|+..++++.|+|++.++++++.-+- .+++.+...|- |.=.-+-||....+ ++..|
T Consensus 234 l~~N~~~a~~Ia~~nEl~~lae~~GiD~~~v~~~~~~dpr-------ig~~~~~pg~G-~GG~C~pkD~~~L~--~~~~~ 303 (432)
T 3pid_A 234 LFANTYLALRVAYFNELDSYAESQGLNSKQIIEGVCLDPR-------IGNHYNNPSFG-YGGYCLPKDTKQLL--ANYES 303 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTT-------TCSSSCCCCSC-CCTTTHHHHHHHHH--HHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCCC-------CCcccCCCCCC-CcccchhhhHHHHH--HHhcC
Confidence 5799999999999999999999999999999999976531 11111111000 22234568877654 34458
Q ss_pred CCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeEEEEccch----
Q 001973 81 FPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRVGFIGLGA---- 156 (988)
Q Consensus 81 ~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kIgiIG~G~---- 156 (988)
++.++.+++.+.=+.... -+++.+.+. ...+|+|+|+-.
T Consensus 304 ~~~~li~~~~~~N~~~~~---------~v~~~i~~~----------------------------~~~~v~vlGlafK~~t 346 (432)
T 3pid_A 304 VPNNIIAAIVDANRTRKD---------FIADSILAR----------------------------KPKVVGVYRLIMKSGS 346 (432)
T ss_dssp SCCSHHHHHHHHHHHHHH---------HHHHHHHHT----------------------------CCSSEEEECC------
T ss_pred CchhHHHHHHHHHHhhHH---------HHHHHHHhh----------------------------cCCEEEEEeeEeCCCC
Confidence 888777777665332221 122222111 013789988753
Q ss_pred ------HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 157 ------MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 157 ------mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
-...++..|.+.|.+|.+||...... .-.|...++++.++++++|+|++...++. ++++
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~---~~~~~~~~~~~~~~~~~aD~iv~~~~~~~-~~~~ 411 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQED---EFFNSRVVRDLNAFKQEADVIISNRMAEE-LADV 411 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSS---EETTEEECCCHHHHHHHCSEEECSSCCGG-GGGG
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChh---hcCCceEECCHHHHHhcCCEEEECCCChH-HHHH
Confidence 36789999999999999999765321 11255678899999999999998777654 4444
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2.2e-05 Score=91.59 Aligned_cols=242 Identities=16% Similarity=0.135 Sum_probs=170.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---hhccCCchhhhccccccccCCCCc-chHHHHH-----HhHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQ-FGIHPWVLYDII---SNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFI-----QNLG 70 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~-~Gld~~~~~~~l---~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~-----KDl~ 70 (988)
+++|.+.+..+.+++|++.++++ .|++++.+.+++ +.|..+|++++.+.+.+.++||.+ |.++.+. ||.+
T Consensus 196 l~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d~~~~~~v~~i~D~~~~k~tG 275 (480)
T 2zyd_A 196 MVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTG 275 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCCCCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHHHHhcCCCCCcchHHHHHHHhcCchHH
Confidence 47999999999999999999999 699999999998 558899999998888888899976 8888766 5555
Q ss_pred -HHHHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCCeE
Q 001973 71 -IALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVTRV 149 (988)
Q Consensus 71 -la~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~kI 149 (988)
++.+.|.+.|+|+|+.+.+ .|.+..... + ..
T Consensus 276 ~~~~~~A~~~gv~~Pi~~~a--v~ar~~s~~---k---------------------------------~~---------- 307 (480)
T 2zyd_A 276 KWTSQSALDLGEPLSLITES--VFARYISSL---K---------------------------------DQ---------- 307 (480)
T ss_dssp THHHHHHHHHTCCCHHHHHH--HHHHHHHTC---H---------------------------------HH----------
T ss_pred HHHHHHHHHcCCCCchHHHH--HHHHhhhcc---h---------------------------------hh----------
Confidence 8899999999999988765 122222100 0 00
Q ss_pred EEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhh
Q 001973 150 GFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSA 229 (988)
Q Consensus 150 giIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~ 229 (988)
+.+ ...++
T Consensus 308 -------------------------------R~~--------------------------------~~~~~--------- 315 (480)
T 2zyd_A 308 -------------------------------RVA--------------------------------ASKVL--------- 315 (480)
T ss_dssp -------------------------------HHH--------------------------------HHTTC---------
T ss_pred -------------------------------hHH--------------------------------hhccc---------
Confidence 000 00000
Q ss_pred CCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEEe
Q 001973 230 LSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIK 309 (988)
Q Consensus 230 l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~~ 309 (988)
..|. .+ +
T Consensus 316 -----------------------------------~g~~----------------------------------~~---~- 322 (480)
T 2zyd_A 316 -----------------------------------SGPQ----------------------------------AQ---P- 322 (480)
T ss_dssp -----------------------------------CCCC----------------------------------CC---C-
T ss_pred -----------------------------------CCCC----------------------------------CC---C-
Confidence 0010 00 0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCccccccccccccCC-CCC----
Q 001973 310 GGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR------LGLNTRVLFNIITDSG-GSSWMFENRVPHMLDN-DYT---- 377 (988)
Q Consensus 310 g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~------~Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~-~~~---- 377 (988)
..+..+.+|.+.|.+.+.++.+++|.+.+.++ .++|...+.++++.|. -.|++++...+.+... +..
T Consensus 323 -~~~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~ 401 (480)
T 2zyd_A 323 -AGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLL 401 (480)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHHHHHHCTTCSCGGG
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChHhhhc
Confidence 01345688999999999999999999999877 6899999999998775 5677766443333221 111
Q ss_pred -CCc--hhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 378 -PYS--ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 378 -~~~--~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
+.| .++......+.++..|.+.|+|+|.+.++...|+.-... .-.+.+++..+...|..
T Consensus 402 ~~~f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~----~~~~~l~qa~Rd~FG~H 463 (480)
T 2zyd_A 402 APYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAA----VLPANLIQAQRDYFGAH 463 (480)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCS----SCTHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC----CchhhHHHHHHHhcCCC
Confidence 112 233444467889999999999999999999987754432 23456888888777653
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00024 Score=78.28 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=53.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc-----CCcccCCHHHHhccCcEEEEEcCCh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV-----GGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~-----G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
+.+||+|||+|.+|.+++..|+..++ +|.++|+++++++. +.+. ..++..+..+++++||+||++.+.+
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~ 83 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAP 83 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence 34799999999999999999998886 89999999887764 2221 2223335577899999999998766
Q ss_pred H
Q 001973 214 A 214 (988)
Q Consensus 214 ~ 214 (988)
.
T Consensus 84 ~ 84 (318)
T 1ez4_A 84 Q 84 (318)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00019 Score=79.58 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=55.6
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCC--CeEEEEeCChhHHHH----HHhc-----CCcccCCHHHHhccCcEEEEEcC
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSN--FTVIGYDVYRPTLTK----FQNV-----GGLIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~----l~~~-----G~~~~~s~~e~~~~aDvV~l~vp 211 (988)
++++||+|||+ |.+|+++|..++..| .+|.++|++.++++. |... .+..++++.+++++||+||++..
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence 34579999998 999999999999998 589999999887654 4432 23445788889999999999976
Q ss_pred Ch
Q 001973 212 NE 213 (988)
Q Consensus 212 ~~ 213 (988)
.+
T Consensus 86 ~p 87 (343)
T 3fi9_A 86 AP 87 (343)
T ss_dssp --
T ss_pred CC
Confidence 54
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00012 Score=80.22 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=52.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHH----HHHhc------CCccc-CCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLT----KFQNV------GGLIA-NSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~----~l~~~------G~~~~-~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+|.||.++|..|+..|+ +|.++|+++++++ ++.+. ...+. ++..+++++||+||++.+.+
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 599999999999999999999887 8999999998765 23321 22332 35567889999999998766
Q ss_pred H
Q 001973 214 A 214 (988)
Q Consensus 214 ~ 214 (988)
.
T Consensus 81 ~ 81 (314)
T 3nep_X 81 R 81 (314)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.8e-05 Score=83.07 Aligned_cols=112 Identities=12% Similarity=0.060 Sum_probs=75.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCC----cccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGG----LIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~----~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
.+++.|+|+|.+|.+++..|++.|. +|++|||++++.+++.+.-. ....++.++..++|+||.|+|.....+...
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~~~~ 205 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPA 205 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC----CS
T ss_pred CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCCCCC
Confidence 3589999999999999999999996 99999999999888765311 112244555578999999999865332211
Q ss_pred ccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCce-Eec
Q 001973 221 YGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLK-LVD 265 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~-~ld 265 (988)
.. ...++++.+++|+... |..+.-+ +...+ +|.. .++
T Consensus 206 l~----~~~l~~~~~V~DlvY~-P~~T~ll-~~A~~--~G~~~~~~ 243 (281)
T 3o8q_A 206 ID----PVIFSSRSVCYDMMYG-KGYTVFN-QWARQ--HGCAQAID 243 (281)
T ss_dssp CC----GGGEEEEEEEEESCCC-SSCCHHH-HHHHH--TTCSEEEC
T ss_pred CC----HHHhCcCCEEEEecCC-CccCHHH-HHHHH--CCCCEEEC
Confidence 11 2345678999999987 4444433 44444 3444 443
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00026 Score=69.16 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=62.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCC-hhHHHHHH---hcCCcc----cCC---HHHH-hccCcEEEEEcCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVY-RPTLTKFQ---NVGGLI----ANS---PAEA-AKDVGVLVIMVTNE 213 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~---~~G~~~----~~s---~~e~-~~~aDvV~l~vp~~ 213 (988)
.++|.|+|+|.+|..++..|.+.|++|++.|++ +++.+.+. ..|..+ .++ +.++ ++++|+|+++++++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence 358999999999999999999999999999998 46555544 334332 122 2333 67899999999987
Q ss_pred HHHHHHHccccchhhhC-CCCCEEEecCC
Q 001973 214 AQAESVLYGDLGAVSAL-SSGASIILSST 241 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l-~~g~ivId~st 241 (988)
..-..+. .....+ +...+++..++
T Consensus 83 ~~n~~~~----~~a~~~~~~~~ii~~~~~ 107 (153)
T 1id1_A 83 ADNAFVV----LSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp HHHHHHH----HHHHHHTSSSCEEEECSS
T ss_pred HHHHHHH----HHHHHHCCCCEEEEEECC
Confidence 6333332 223334 33466665544
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00013 Score=79.72 Aligned_cols=91 Identities=11% Similarity=0.169 Sum_probs=63.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChh---HHHHHHhc---CCcccCCHHHHhccCcEEEEEcCCh----
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRP---TLTKFQNV---GGLIANSPAEAAKDVGVLVIMVTNE---- 213 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~---~~~~l~~~---G~~~~~s~~e~~~~aDvV~l~vp~~---- 213 (988)
++||+|||+|.||..+|..|+.+|+ +|.++|++++ .+.++... .+..++++ +++++||+||++...+
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~ 92 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ 92 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence 4699999999999999999999998 9999999984 22233322 23445677 7789999999997322
Q ss_pred ----------HHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 214 ----------AQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 214 ----------~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
..++++. +.+.+.. ++.+++..|+
T Consensus 93 tR~dl~~~n~~i~~~i~---~~i~~~~-p~a~iiv~sN 126 (303)
T 2i6t_A 93 SYLDVVQSNVDMFRALV---PALGHYS-QHSVLLVASQ 126 (303)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHHHT-TTCEEEECSS
T ss_pred CHHHHHHHHHHHHHHHH---HHHHHhC-CCeEEEEcCC
Confidence 1234444 3455554 6677776666
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00023 Score=79.41 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=74.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh------hHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR------PTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~------~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
++|+|||.|.-|.+-|.||...|.+|++--|.. ...+...+.|..+. +..|+++.+|+|++-+|+..+. .++
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~~q~-~vy 115 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDKQHS-DVV 115 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGGGHH-HHH
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChhhHH-HHH
Confidence 699999999999999999999999999887732 34566777788764 7999999999999999997644 455
Q ss_pred ccccchhhhCCCCCEEEecC
Q 001973 221 YGDLGAVSALSSGASIILSS 240 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~s 240 (988)
+.+.+++++|+++.-..
T Consensus 116 ---~~I~p~lk~G~~L~faH 132 (491)
T 3ulk_A 116 ---RTVQPLMKDGAALGYSH 132 (491)
T ss_dssp ---HHHGGGSCTTCEEEESS
T ss_pred ---HHHHhhCCCCCEEEecC
Confidence 46999999999988544
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.55 E-value=9.3e-05 Score=83.47 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=69.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc----c--cCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL----I--ANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~----~--~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
++|||.|+|+|.+|+.++..|++ .++|+++|++.++++.+.+..-. + .+++.++++++|+|+.|+|.... ..
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~-~~ 92 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLG-FK 92 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGH-HH
T ss_pred CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCccc-ch
Confidence 35799999999999999999976 48999999999999887654211 1 12345677899999999987542 22
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+. + ..+..|+-++|.|-..+ ...++.+...+
T Consensus 93 v~---~---~~~~~g~~yvD~s~~~~-~~~~l~~~a~~ 123 (365)
T 3abi_A 93 SI---K---AAIKSKVDMVDVSFMPE-NPLELRDEAEK 123 (365)
T ss_dssp HH---H---HHHHHTCEEEECCCCSS-CGGGGHHHHHH
T ss_pred HH---H---HHHhcCcceEeeeccch-hhhhhhhhhcc
Confidence 22 1 12335677788775433 33444444444
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00014 Score=79.99 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=53.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc-------CCcccCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV-------GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~-------G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
.+||+|||+|.||.++|..|+..|+ +|.++|+++++++. +.+. .+..++++++ +++||+||++...
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG~ 99 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAGA 99 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCCC
Confidence 4799999999999999999999997 89999999887654 2221 1223556665 8999999999765
Q ss_pred h
Q 001973 213 E 213 (988)
Q Consensus 213 ~ 213 (988)
+
T Consensus 100 p 100 (330)
T 3ldh_A 100 R 100 (330)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=9e-05 Score=84.12 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=70.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc--CC---------------------------H
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA--NS---------------------------P 196 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~--~s---------------------------~ 196 (988)
..+|+|+|+|.+|...+..+...|.+|++||+++++.+.+.+.|.... +. +
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l 251 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV 251 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHH
Confidence 359999999999999999999999999999999998888877787544 11 5
Q ss_pred HHHhccCcEEEEEcCChHH-HHHHHccccchhhhCCCCCEEEecCC
Q 001973 197 AEAAKDVGVLVIMVTNEAQ-AESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 197 ~e~~~~aDvV~l~vp~~~~-~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
.+.+..+|+||.|++.+.. ...++. ++....++++.+|||++.
T Consensus 252 ~~~~~~aDvVi~~~~~pg~~~~~li~--~~~l~~mk~g~vivdva~ 295 (384)
T 1l7d_A 252 LKELVKTDIAITTALIPGKPAPVLIT--EEMVTKMKPGSVIIDLAV 295 (384)
T ss_dssp HHHHTTCSEEEECCCCTTSCCCCCSC--HHHHTTSCTTCEEEETTG
T ss_pred HHHhCCCCEEEECCccCCCCCCeeeC--HHHHhcCCCCCEEEEEec
Confidence 6677899999999933210 001110 233456788999999884
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00014 Score=81.79 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=76.4
Q ss_pred CCCCeEEEEccchHHHH-HHHHHHhC-CCeE-EEEeCChhHHHHHHhc-CCcccCCHHHHhcc--CcEEEEEcCChHHHH
Q 001973 144 NSVTRVGFIGLGAMGFG-MATHLLRS-NFTV-IGYDVYRPTLTKFQNV-GGLIANSPAEAAKD--VGVLVIMVTNEAQAE 217 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~-lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~--aDvV~l~vp~~~~~~ 217 (988)
|+++||||||+|.||.. .+..|.+. +++| .++|+++++.. .+. +....+|+++++++ .|+|++|+|+....+
T Consensus 3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~ 80 (362)
T 3fhl_A 3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYE 80 (362)
T ss_dssp CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHH
T ss_pred CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHH
Confidence 34579999999999997 77777765 6775 47899988732 122 56778999999976 899999999987665
Q ss_pred HHHccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 218 SVLYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
.+. ..+..| ++++..- +..+..++++.+...+
T Consensus 81 ~~~-------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~ 114 (362)
T 3fhl_A 81 YAG-------MALEAGKNVVVEKPFTSTTKQGEELIALAKK 114 (362)
T ss_dssp HHH-------HHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred HHH-------HHHHCCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 554 223334 4566553 6678888888887766
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=8.4e-05 Score=80.20 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=72.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CC--cc-cCCHHHHhc-cCcEEEEEcCChHHHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GG--LI-ANSPAEAAK-DVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~--~~-~~s~~e~~~-~aDvV~l~vp~~~~~~~vl 220 (988)
.++|.|+|+|.||.+++..|++.|++|++|||++++.+++.+. +. .. ..+++++.+ ++|+||.++|..... .+.
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~-~~~ 197 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSG-GTA 197 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--------
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCCC-CCC
Confidence 3589999999999999999999999999999999998887643 11 11 123333323 899999999986532 111
Q ss_pred ccccch-hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCce-Eec
Q 001973 221 YGDLGA-VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLK-LVD 265 (988)
Q Consensus 221 ~~~~~i-~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~-~ld 265 (988)
.+ ...+.++.+++|++......+. +.+...+ .|.. +++
T Consensus 198 ----~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~--~G~~~~v~ 237 (272)
T 1p77_A 198 ----SVDAEILKLGSAFYDMQYAKGTDTP-FIALCKS--LGLTNVSD 237 (272)
T ss_dssp ----CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHH--TTCCCEEC
T ss_pred ----CCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHH--cCCCEeeC
Confidence 11 1224568899999986544133 3344444 3444 443
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00012 Score=84.63 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=54.5
Q ss_pred CCeEEEEccchH--HHHHHHHHHhC----CCeEEEEeCChhHHHHHHhc--------C----CcccCCHHHHhccCcEEE
Q 001973 146 VTRVGFIGLGAM--GFGMATHLLRS----NFTVIGYDVYRPTLTKFQNV--------G----GLIANSPAEAAKDVGVLV 207 (988)
Q Consensus 146 ~~kIgiIG~G~m--G~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~--------G----~~~~~s~~e~~~~aDvV~ 207 (988)
+|||+|||+|.| |.+++..|+.. |++|.+||+++++++..... + ++.++++.+++++||+||
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI 82 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 82 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence 469999999996 57678888754 89999999999887653321 1 234678888999999999
Q ss_pred EEcCChH
Q 001973 208 IMVTNEA 214 (988)
Q Consensus 208 l~vp~~~ 214 (988)
+++|...
T Consensus 83 iaagv~~ 89 (480)
T 1obb_A 83 NTAMVGG 89 (480)
T ss_dssp ECCCTTH
T ss_pred ECCCccc
Confidence 9999754
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00056 Score=75.58 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=54.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc-----CCcccCCHHHHhccCcEEEEEcCCh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV-----GGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~-----G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
+.+||+|||+|.+|.+++..|+..++ +|.++|+++++++. +.+. ...+..+..+++++||+||++.+.+
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~ 87 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP 87 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 45799999999999999999998886 89999999887754 2221 1223335577899999999998765
Q ss_pred H
Q 001973 214 A 214 (988)
Q Consensus 214 ~ 214 (988)
.
T Consensus 88 ~ 88 (326)
T 2zqz_A 88 Q 88 (326)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00025 Score=78.09 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=55.7
Q ss_pred CCCCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc-----CCcccCCHHHHhccCcEEEEEcC
Q 001973 143 SNSVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV-----GGLIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~-----G~~~~~s~~e~~~~aDvV~l~vp 211 (988)
++..+||+|||+|.||.++|..|+..|+ +|.++|+++++++. |.+. +....++..+++++||+||++..
T Consensus 6 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag 85 (326)
T 3vku_A 6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAG 85 (326)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCC
Confidence 3456799999999999999999999987 89999999887763 3321 23334455678899999999987
Q ss_pred ChH
Q 001973 212 NEA 214 (988)
Q Consensus 212 ~~~ 214 (988)
.+.
T Consensus 86 ~~~ 88 (326)
T 3vku_A 86 APQ 88 (326)
T ss_dssp CC-
T ss_pred CCC
Confidence 653
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00011 Score=86.08 Aligned_cols=87 Identities=18% Similarity=0.112 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHh---hccCCchhhhccccccccCCCCc-chHHHH------HHhH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQF-GIHPWVLYDIIS---NAAGNSWIFKNYIPNLLRGDAKL-HFLNAF------IQNL 69 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~-Gld~~~~~~~l~---~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~------~KDl 69 (988)
+++|.+.+..+.+++|++.++++. |++++.+.+++. .+...|++.+.+.+.+..++|.+ |.++.+ .||.
T Consensus 184 l~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~~d~~~~~~ld~i~d~~~~k~t~ 263 (482)
T 2pgd_A 184 MVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTG 263 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCCCCCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHHhHHhhccCCCCCeeecccccccccccHH
Confidence 478999999999999999999999 999999999985 56688998888888888899887 777776 4677
Q ss_pred HHHHHHHHhcCCCCcHHH
Q 001973 70 GIALDMAKTLAFPLPLLA 87 (988)
Q Consensus 70 ~la~~~a~~~g~~~p~~~ 87 (988)
+.+.++|++.|+|+|+..
T Consensus 264 ~~~~~~A~~~Gv~~P~i~ 281 (482)
T 2pgd_A 264 KWTAISALEYGVPVTLIG 281 (482)
T ss_dssp HHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHcCCCcchHH
Confidence 889999999999999985
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=8e-05 Score=86.93 Aligned_cols=241 Identities=15% Similarity=0.152 Sum_probs=169.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccCCchhhhccccccccCCCCc--chHHHHH-----HhH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQ-FGIHPWVLYDIIS---NAAGNSWIFKNYIPNLLRGDAKL--HFLNAFI-----QNL 69 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~-~Gld~~~~~~~l~---~~~~~s~~~~~~~~~~~~~~~~~--f~l~l~~-----KDl 69 (988)
++||.+.+..+.+++|++.++++ .|++++.+.+++. .+..+|++++...+.+.++||.+ |.++.+. ||.
T Consensus 187 l~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d~~~g~~~vd~i~D~~~~k~t 266 (474)
T 2iz1_A 187 MVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGT 266 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHTTCBCSSSSSBGGGGBCSCCCCCSH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhhHhhcCCCCCChhHHHHHHHhhcccch
Confidence 47999999999999999999999 7999999999985 57789999998888888889866 6787766 777
Q ss_pred H-HHHHHHHhcCCCCcHHHHH-HHHHHHHhhCcCCCCCchhHHHHHHhhhcccccccccccccCchhhHHHhhhcCCCCC
Q 001973 70 G-IALDMAKTLAFPLPLLAVA-HQQLILGLSHAHANDDNPPLVKVWENVLGVNITDAANLEAYKPEELAKQITAKSNSVT 147 (988)
Q Consensus 70 ~-la~~~a~~~g~~~p~~~~~-~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~~ 147 (988)
+ .+.+.|++.|+|+|+.+.+ ...+...... ++
T Consensus 267 G~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~--------------------------------------~r-------- 300 (474)
T 2iz1_A 267 GKWTSESALDLGVPLPLITESVFARYISTYKD--------------------------------------ER-------- 300 (474)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHH--------------------------------------HH--------
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhhhhhh--------------------------------------hh--------
Confidence 7 7899999999999988765 2222211000 00
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAV 227 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~ 227 (988)
.. ...++
T Consensus 301 ----------------------------------~~--------------------------------~~~~~------- 307 (474)
T 2iz1_A 301 ----------------------------------VK--------------------------------ASKVL------- 307 (474)
T ss_dssp ----------------------------------HH--------------------------------HHHHC-------
T ss_pred ----------------------------------HH--------------------------------hhhcc-------
Confidence 00 00011
Q ss_pred hhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEE
Q 001973 228 SALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYV 307 (988)
Q Consensus 228 ~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~ 307 (988)
..|. .+
T Consensus 308 -------------------------------------~g~~----------------------------------~~--- 313 (474)
T 2iz1_A 308 -------------------------------------SGPA----------------------------------LD--- 313 (474)
T ss_dssp -------------------------------------CCCC----------------------------------CC---
T ss_pred -------------------------------------CCCC----------------------------------Cc---
Confidence 0010 00
Q ss_pred EeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhcC-CCccccccccccccCC-CCC--
Q 001973 308 IKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGAR------LGLNTRVLFNIITDSG-GSSWMFENRVPHMLDN-DYT-- 377 (988)
Q Consensus 308 ~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~------~Gid~~~~~~~l~~~~-~~s~~~~~~~~~~~~~-~~~-- 377 (988)
+ ..+..+.+|.++|.+.+.++.+++|.+.+.++ .++|...+.++++.|. -.|++++...+.+... +..
T Consensus 314 ~--~~~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l 391 (474)
T 2iz1_A 314 F--SGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENL 391 (474)
T ss_dssp C--CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHHHHHHHHCTTCCCG
T ss_pred C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHhcCCChhhh
Confidence 0 01345688999999999999999999999877 6899999999998764 5677766443333221 111
Q ss_pred ---CCc--hhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcc
Q 001973 378 ---PYS--ALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVK 440 (988)
Q Consensus 378 ---~~~--~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~ 440 (988)
+.| .+.......+.++..|.+.|+|+|.+.++...|+.-.. +.-.+.+++..+...|..
T Consensus 392 ~~~~~~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~----~~~~~~l~qa~rd~fg~h 455 (474)
T 2iz1_A 392 LLDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRS----ENLPANLIQAQRDYFGAH 455 (474)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTC----SSCTHHHHHHHHHHHHCC
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc----CCchhhHHHHHHHhcCCc
Confidence 112 23344455788999999999999999999997665432 233456888888877754
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00022 Score=82.20 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=54.8
Q ss_pred CCeEEEEccchH-HHHHHHHHHhC-----CCeEEEEeCCh--hHHHHHHh--------cC----CcccCCHHHHhccCcE
Q 001973 146 VTRVGFIGLGAM-GFGMATHLLRS-----NFTVIGYDVYR--PTLTKFQN--------VG----GLIANSPAEAAKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~G~m-G~~lA~~L~~~-----G~~V~v~dr~~--~~~~~l~~--------~G----~~~~~s~~e~~~~aDv 205 (988)
.|||+|||+|.+ |.+++..|+.+ +++|.+||+++ ++++.... .+ +..+++..+++++||+
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~ 86 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 86 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence 579999999999 88888888874 67899999999 87665221 12 2235788899999999
Q ss_pred EEEEcCChH
Q 001973 206 LVIMVTNEA 214 (988)
Q Consensus 206 V~l~vp~~~ 214 (988)
|+++++.+.
T Consensus 87 VVitagv~~ 95 (450)
T 1s6y_A 87 VTTQFRVGG 95 (450)
T ss_dssp EEECCCTTH
T ss_pred EEEcCCCCC
Confidence 999999754
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.48 E-value=7.4e-05 Score=80.37 Aligned_cols=111 Identities=15% Similarity=0.116 Sum_probs=76.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHH---HHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAE---SVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~---~vl~ 221 (988)
+++.|||+|.||.+++..|.+.|. +|++|||++++.+.+.+. +....++.. ..++|+||.|+|...... +..
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~~- 196 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMDL- 196 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTSC-
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCCC-
Confidence 489999999999999999999997 799999999999888754 443332322 468999999999754211 000
Q ss_pred cccch-hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCc
Q 001973 222 GDLGA-VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 222 ~~~~i-~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
.+ ...+.++.+++|+... |..+ .+.+...+ .|..++++.
T Consensus 197 ---~~~~~~l~~~~~v~DlvY~-P~~T-~ll~~A~~--~G~~~i~Gl 236 (271)
T 1npy_A 197 ---AFPKAFIDNASVAFDVVAM-PVET-PFIRYAQA--RGKQTISGA 236 (271)
T ss_dssp ---SSCHHHHHHCSEEEECCCS-SSSC-HHHHHHHH--TTCEEECHH
T ss_pred ---CCCHHHcCCCCEEEEeecC-CCCC-HHHHHHHH--CCCEEECCH
Confidence 01 1234568899999875 4433 44444444 466666553
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00048 Score=78.09 Aligned_cols=107 Identities=17% Similarity=0.055 Sum_probs=75.6
Q ss_pred CCCCCeEEEEccchHHHHHHHHHHhC--------CCe-EEEEeCChhHHHHHHhc-CC-cccCCHHHHhc--cCcEEEEE
Q 001973 143 SNSVTRVGFIGLGAMGFGMATHLLRS--------NFT-VIGYDVYRPTLTKFQNV-GG-LIANSPAEAAK--DVGVLVIM 209 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~lA~~L~~~--------G~~-V~v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~--~aDvV~l~ 209 (988)
.|++.||||||+|.||..-+..+.+. +.+ |-++|+++++.+++.+. |+ ...+|.+++++ +.|+|++|
T Consensus 22 ~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Ia 101 (393)
T 4fb5_A 22 SMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVT 101 (393)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEEC
T ss_pred CCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEEC
Confidence 34456999999999999888776542 345 56789999999887764 65 46789999986 47999999
Q ss_pred cCChHHHHHHHccccchhhhCCCC-CEEEec-CCCCHHHHHHHHHHHHh
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSG-ASIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g-~ivId~-st~~p~~~~~l~~~l~~ 256 (988)
+|+....+.+. ..+..| ++++.. -+.....++++.+...+
T Consensus 102 tP~~~H~~~a~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 143 (393)
T 4fb5_A 102 TPNQFHAEMAI-------AALEAGKHVWCEKPMAPAYADAERMLATAER 143 (393)
T ss_dssp SCGGGHHHHHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CChHHHHHHHH-------HHHhcCCeEEEccCCcccHHHHHHhhhhHHh
Confidence 99987666554 223334 445544 25667888888887766
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00027 Score=81.02 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=78.4
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCC---------Ce-EEEEeCChhHHHHHHhc-CC-cccCCHHHHhc--cCcEEEEE
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSN---------FT-VIGYDVYRPTLTKFQNV-GG-LIANSPAEAAK--DVGVLVIM 209 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G---------~~-V~v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~--~aDvV~l~ 209 (988)
++++||||||+|.||...+..|.+.+ .+ |-++|+++++++++.+. |+ +..+|.+++++ +.|+|++|
T Consensus 24 s~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~ 103 (412)
T 4gqa_A 24 SARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDIT 103 (412)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEEC
T ss_pred cccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEEC
Confidence 34579999999999999999887643 35 45789999999887654 65 46789999986 57999999
Q ss_pred cCChHHHHHHHccccchhhhCCCC-CEEEec-CCCCHHHHHHHHHHHHh
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSG-ASIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g-~ivId~-st~~p~~~~~l~~~l~~ 256 (988)
+|+....+.++ ..+..| ++++.. -+.....++++.+...+
T Consensus 104 tp~~~H~~~~~-------~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~ 145 (412)
T 4gqa_A 104 SPNHLHYTMAM-------AAIAAGKHVYCEKPLAVNEQQAQEMAQAARR 145 (412)
T ss_dssp SCGGGHHHHHH-------HHHHTTCEEEEESCSCSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHH-------HHHHcCCCeEeecCCcCCHHHHHHHHHHHHH
Confidence 99987666554 223334 455554 25667888888877665
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00013 Score=85.18 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=77.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh----hccCCchhhhccccccccCCCCc-chHHHHH-----HhH-
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIIS----NAAGNSWIFKNYIPNLLRGDAKL-HFLNAFI-----QNL- 69 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~----~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~-----KDl- 69 (988)
+++|.+.+..+.+++|++.++++.|++++.+.+++. .+.+.|++.+.+.+.+.++||.. |.++.+. ||.
T Consensus 186 l~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~~~~l~~~d~~G~~~ld~i~D~~~~kgtg 265 (478)
T 1pgj_A 186 MYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDRIGSKGTG 265 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCCCCCCSHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHhhchhhhcCCCCChhHHHHHHHHhcCccHH
Confidence 468999999999999999999999999999999997 67788998888877777788854 7787777 665
Q ss_pred HHHHHHHHhcCCCCcHHHHH
Q 001973 70 GIALDMAKTLAFPLPLLAVA 89 (988)
Q Consensus 70 ~la~~~a~~~g~~~p~~~~~ 89 (988)
+.+.++|++.|+|+|+.+.+
T Consensus 266 ~~~~~~A~~~Gv~~Pi~~~a 285 (478)
T 1pgj_A 266 LWSAQEALEIGVPAPSLNMA 285 (478)
T ss_dssp HHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHH
Confidence 69999999999999998873
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00031 Score=75.66 Aligned_cols=93 Identities=14% Similarity=0.082 Sum_probs=67.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CC--c-ccCCHHHHh-ccCcEEEEEcCChHHHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GG--L-IANSPAEAA-KDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~--~-~~~s~~e~~-~~aDvV~l~vp~~~~~~~vl 220 (988)
.+++.|+|+|.||.+++..|++.|++|+++||++++.+++.+. +. . ...+..++. ..+|+||.++|.+.. ..+.
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~-~~~~ 197 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GDIP 197 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TCCC
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC-CCCC
Confidence 3589999999999999999999999999999999998877643 21 1 122333333 589999999997653 1110
Q ss_pred ccccch-hhhCCCCCEEEecCCCC
Q 001973 221 YGDLGA-VSALSSGASIILSSTVS 243 (988)
Q Consensus 221 ~~~~~i-~~~l~~g~ivId~st~~ 243 (988)
.+ ...++++.+++|++...
T Consensus 198 ----~i~~~~l~~~~~v~D~~y~p 217 (271)
T 1nyt_A 198 ----AIPSSLIHPGIYCYDMFYQK 217 (271)
T ss_dssp ----CCCGGGCCTTCEEEESCCCS
T ss_pred ----CCCHHHcCCCCEEEEeccCC
Confidence 11 12356889999999873
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00076 Score=77.00 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc----CCH---HHH-hccCcEEEEEcCChHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA----NSP---AEA-AKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~----~s~---~e~-~~~aDvV~l~vp~~~~~~ 217 (988)
.++|.|+|+|.+|..+++.|.+.|++|++.|+++++++.+.+.|..+. ++. .++ ++++|+||++++++....
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~ 83 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL 83 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence 368999999999999999999999999999999999999998886531 222 222 568999999999977555
Q ss_pred HHHccccchhhhCCCCCEEEecCCCCHHHHHHH
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTVSPGFVSQL 250 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l 250 (988)
.++ .....+.+...||-... .+.....+
T Consensus 84 ~i~----~~ar~~~p~~~Iiara~-~~~~~~~L 111 (413)
T 3l9w_A 84 QLT----EMVKEHFPHLQIIARAR-DVDHYIRL 111 (413)
T ss_dssp HHH----HHHHHHCTTCEEEEEES-SHHHHHHH
T ss_pred HHH----HHHHHhCCCCeEEEEEC-CHHHHHHH
Confidence 444 33444555533433333 34554443
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00038 Score=77.93 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=72.7
Q ss_pred CeEEEEccchHHH-HHHHHHHhC-CCeE-EEEeCChhHHHHHHh----cCCcccCCHHHHhcc--CcEEEEEcCChHHHH
Q 001973 147 TRVGFIGLGAMGF-GMATHLLRS-NFTV-IGYDVYRPTLTKFQN----VGGLIANSPAEAAKD--VGVLVIMVTNEAQAE 217 (988)
Q Consensus 147 ~kIgiIG~G~mG~-~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~----~G~~~~~s~~e~~~~--aDvV~l~vp~~~~~~ 217 (988)
+||||||+|.||. ..+..|.+. +++| .++|++ +.+++.+ .++...+|+++++++ .|+|++|+|+....+
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 80 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYD 80 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHH
T ss_pred eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHHH
Confidence 6999999999999 566667664 5775 478988 3344432 467788999999975 899999999987655
Q ss_pred HHHccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHh
Q 001973 218 SVLYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
.+. ..+..| +++++.- +..+..++++.+...+
T Consensus 81 ~~~-------~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 114 (349)
T 3i23_A 81 LAK-------QAILAGKSVIVEKPFCDTLEHAEELFALGQE 114 (349)
T ss_dssp HHH-------HHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred HHH-------HHHHcCCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 544 223344 4555543 5668888888887766
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00015 Score=81.63 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=75.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhC--CCeEE-EEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHH----HH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS--NFTVI-GYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQ----AE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~----~~ 217 (988)
+.||+|||+| ||...+..+.+. ++++. ++|+++++.+++.+. |+...+|+++++++.|++++++|+... .+
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~~ 85 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGTQ 85 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHHH
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHHH
Confidence 4699999999 899888888775 56755 689999999887654 888889999999999999999998643 11
Q ss_pred HHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
-+ ...+..|+-|+.---..++.++++.+...+
T Consensus 86 ~a-------~~al~aGkhVl~EKPl~~~ea~~l~~~A~~ 117 (372)
T 4gmf_A 86 LA-------RHFLARGVHVIQEHPLHPDDISSLQTLAQE 117 (372)
T ss_dssp HH-------HHHHHTTCEEEEESCCCHHHHHHHHHHHHH
T ss_pred HH-------HHHHHcCCcEEEecCCCHHHHHHHHHHHHH
Confidence 11 122334544444444678888888777666
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00045 Score=79.88 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=75.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-C-Ccc----cC---CHHHHhccCcEEEEEcCChHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-G-GLI----AN---SPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G-~~~----~~---s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
+++|.|+|+|.+|..++..|++.|++|+++||++++.+.+.+. + ... .. ++.++++++|+|+.|+|.....
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~~ 82 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA 82 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccch
Confidence 4689999999999999999999999999999999988876543 1 111 12 3446678999999999864322
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
. +. ...+.+|..+++.+...|.. ..+.+...+ .|+.++.+
T Consensus 83 ~-i~------~a~l~~g~~vvd~~~~~~~~-~~l~~aA~~--aGv~~i~g 122 (450)
T 1ff9_A 83 T-VI------KSAIRQKKHVVTTSYVSPAM-MELDQAAKD--AGITVMNE 122 (450)
T ss_dssp H-HH------HHHHHHTCEEEESSCCCHHH-HHTHHHHHH--TTCEEECS
T ss_pred H-HH------HHHHhCCCeEEEeecccHHH-HHHHHHHHH--CCCeEEeC
Confidence 1 21 11233467788887766665 445555555 45555543
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00057 Score=77.48 Aligned_cols=106 Identities=10% Similarity=0.055 Sum_probs=76.9
Q ss_pred CCCCeEEEEc-cchHHHH-HH----HHHHhCC-CeE----------EEEeCChhHHHHHHh-cCC-cccCCHHHHhcc--
Q 001973 144 NSVTRVGFIG-LGAMGFG-MA----THLLRSN-FTV----------IGYDVYRPTLTKFQN-VGG-LIANSPAEAAKD-- 202 (988)
Q Consensus 144 ~~~~kIgiIG-~G~mG~~-lA----~~L~~~G-~~V----------~v~dr~~~~~~~l~~-~G~-~~~~s~~e~~~~-- 202 (988)
++.+|||||| +|.||.. .+ ..+.+.+ ..+ .++|+++++.+.+.+ .|+ ...+|+++++++
T Consensus 4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~ 83 (383)
T 3oqb_A 4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKN 83 (383)
T ss_dssp CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSS
T ss_pred CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCC
Confidence 3456999999 9999998 77 7776654 222 499999999988765 476 467899999875
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecC--CCCHHHHHHHHHHHHh
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSS--TVSPGFVSQLERRLQF 256 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~s--t~~p~~~~~l~~~l~~ 256 (988)
.|+|++|+|+....+.+. ..+..|+-|+.-. +.....++++.+...+
T Consensus 84 iD~V~i~tp~~~h~~~~~-------~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~ 132 (383)
T 3oqb_A 84 DTMFFDAATTQARPGLLT-------QAINAGKHVYCEKPIATNFEEALEVVKLANS 132 (383)
T ss_dssp CCEEEECSCSSSSHHHHH-------HHHTTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CCEEEECCCchHHHHHHH-------HHHHCCCeEEEcCCCCCCHHHHHHHHHHHHH
Confidence 899999999876544433 2344555444333 5677888888887766
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00045 Score=76.69 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=74.4
Q ss_pred CCCCCeEEEEccchHHH-HHHHHHHhC-CCe-EEEEeCChhHHHHHHhcCCcccCCHHHHhcc---CcEEEEEcCChHHH
Q 001973 143 SNSVTRVGFIGLGAMGF-GMATHLLRS-NFT-VIGYDVYRPTLTKFQNVGGLIANSPAEAAKD---VGVLVIMVTNEAQA 216 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~-~lA~~L~~~-G~~-V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~---aDvV~l~vp~~~~~ 216 (988)
+|+++||||||+|.||. ..+..|.+. +.+ |.++|+++++ .|+...+|+++++++ .|+|++|+|+....
T Consensus 22 ~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~ 95 (330)
T 4ew6_A 22 SMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRY 95 (330)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHHH
T ss_pred cCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHH
Confidence 34557999999999998 788888875 566 4568999764 477888999999875 89999999987655
Q ss_pred HHHHccccchhhhCCCCC-EEEecC-CCCHHHHHHHHHHHHhc
Q 001973 217 ESVLYGDLGAVSALSSGA-SIILSS-TVSPGFVSQLERRLQFE 257 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~-ivId~s-t~~p~~~~~l~~~l~~~ 257 (988)
+.+. ..+..|+ +++..- +.....++++.+...+.
T Consensus 96 ~~~~-------~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~ 131 (330)
T 4ew6_A 96 EAAY-------KALVAGKHVFLEKPPGATLSEVADLEALANKQ 131 (330)
T ss_dssp HHHH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 4443 2233454 444432 55678888888877663
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0004 Score=75.79 Aligned_cols=108 Identities=16% Similarity=0.068 Sum_probs=75.3
Q ss_pred CCCCeEEEEccchHHHHHHHHHHh----CCCeEE-EEeCChhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHH
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLR----SNFTVI-GYDVYRPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQA 216 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~----~G~~V~-v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~ 216 (988)
++++||||||+|.||...+..|.+ .+.++. ++|+++.. ...|+. .+|++++++ +.|+|++|+|+....
T Consensus 5 ~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~ 79 (294)
T 1lc0_A 5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----SLDEVR-QISLEDALRSQEIDVAYICSESSSHE 79 (294)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECSCGGGHH
T ss_pred CCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHH
Confidence 445799999999999999999875 356644 67886421 122444 478999886 689999999988765
Q ss_pred HHHHccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHhcCCCceEec
Q 001973 217 ESVLYGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQFEGKDLKLVD 265 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~~~~g~~~ld 265 (988)
+.+. ..+..|+ ++++. -+..+..++++.+...+ .|..+..
T Consensus 80 ~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~--~g~~~~~ 121 (294)
T 1lc0_A 80 DYIR-------QFLQAGKHVLVEYPMTLSFAAAQELWELAAQ--KGRVLHE 121 (294)
T ss_dssp HHHH-------HHHHTTCEEEEESCSCSCHHHHHHHHHHHHH--TTCCEEE
T ss_pred HHHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH--hCCEEEE
Confidence 5554 2233454 66665 46678889999887766 3444443
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00065 Score=75.16 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=52.4
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCC--CeEEEEeCChh--HHHHHHhcCC--cc-----cCCHHHHhccCcEEEEEcCCh
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSN--FTVIGYDVYRP--TLTKFQNVGG--LI-----ANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G--~~V~v~dr~~~--~~~~l~~~G~--~~-----~~s~~e~~~~aDvV~l~vp~~ 213 (988)
+|||+|+| +|.+|..++..|+..| ++|.++|++++ .+.++..... .+ ++++.++++++|+||++.+.+
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~ 87 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 87 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence 46999999 8999999999999999 89999999876 2233443221 11 235678899999999998654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00072 Score=74.20 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=68.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHH----HHhc-----CCcccCCHHHHhccCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTK----FQNV-----GGLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~----l~~~-----G~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
|||+|||+|.+|.+++..|+..+ .+|.++|+++++++. +.+. ...+..+..+++++||+||++.+.+..
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~ 80 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR 80 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence 59999999999999999999887 689999999887764 2221 122222346779999999999876531
Q ss_pred ---------------HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHH
Q 001973 216 ---------------AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLER 252 (988)
Q Consensus 216 ---------------~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~ 252 (988)
++++. +.+.++ .++.+++.. |.+.+..-.+..
T Consensus 81 ~g~~r~dl~~~n~~i~~~i~---~~i~~~-~p~a~iiv~-tNPv~~~t~~~~ 127 (310)
T 2xxj_A 81 PGETRLQLLDRNAQVFAQVV---PRVLEA-APEAVLLVA-TNPVDVMTQVAY 127 (310)
T ss_dssp TTCCHHHHHHHHHHHHHHHH---HHHHHH-CTTCEEEEC-SSSHHHHHHHHH
T ss_pred CCcCHHHHHHhhHHHHHHHH---HHHHHH-CCCcEEEEe-cCchHHHHHHHH
Confidence 23333 334444 456666666 555555444443
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0006 Score=75.22 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=52.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhcC-------CcccCCHHHHhccCcEEEEEcC
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNVG-------GLIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~G-------~~~~~s~~e~~~~aDvV~l~vp 211 (988)
..+||+|||+|.||.++|..|+.+|+ +|.+||++.++++. |.... ...+++++ .+++||+||++..
T Consensus 18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~aG 96 (331)
T 4aj2_A 18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITAG 96 (331)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEccC
Confidence 34799999999999999999999997 89999999887654 33321 12245555 5899999999976
Q ss_pred Ch
Q 001973 212 NE 213 (988)
Q Consensus 212 ~~ 213 (988)
.+
T Consensus 97 ~~ 98 (331)
T 4aj2_A 97 AR 98 (331)
T ss_dssp CC
T ss_pred CC
Confidence 44
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00072 Score=74.34 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=51.1
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCC--CeEEEEeCChhHH--HHHHhcC----Ccc---cCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSN--FTVIGYDVYRPTL--TKFQNVG----GLI---ANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~--~~l~~~G----~~~---~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+|||+ |.+|.+++..|+..| ++|.++|+++... .++.+.. +.. +++++++++++|+||++...+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~ 79 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcC
Confidence 59999998 999999999999988 7999999987222 2333221 111 246888999999999998654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00046 Score=77.54 Aligned_cols=95 Identities=17% Similarity=0.187 Sum_probs=69.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc-------CCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA-------NSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~-------~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
.+|.|+|+|.+|..++..+...|.+|+++||++++.+.+.+.+.... .+..+.+.++|+||.|++.+......
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~ 247 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPI 247 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCe
Confidence 58999999999999999999999999999999999988876543221 23446677899999999764410000
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
+. .+...+.++++.+++|.+..
T Consensus 248 li-~~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 248 LV-PASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp CB-CHHHHTTSCTTCEEEETTCT
T ss_pred ec-CHHHHhhCCCCCEEEEEecC
Confidence 00 02234567788999998764
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00098 Score=77.27 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=77.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhC-CCeEEEEeCChhHHHHHHhc-CCcc----cC---CHHHHhccCcEEEEEcCChHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS-NFTVIGYDVYRPTLTKFQNV-GGLI----AN---SPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~-G~~~----~~---s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
+++|.|+|+|.+|.+++..|++. |++|+++||++++.+.+.+. ++.. .. ++.++++++|+||.|+|.....
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~~ 102 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFHP 102 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGHH
T ss_pred CCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhhH
Confidence 35899999999999999999998 78999999999999888754 3321 11 3456678999999999975422
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
.+. ...+..+..++|.+...|... .+.+...+ .|+.++++
T Consensus 103 -~v~------~a~l~~g~~vvd~~~~~p~~~-~Ll~~Ak~--aGv~~i~g 142 (467)
T 2axq_A 103 -NVV------KSAIRTKTDVVTSSYISPALR-ELEPEIVK--AGITVMNE 142 (467)
T ss_dssp -HHH------HHHHHHTCEEEECSCCCHHHH-HHHHHHHH--HTCEEECS
T ss_pred -HHH------HHHHhcCCEEEEeecCCHHHH-HHHHHHHH--cCCEEEec
Confidence 222 112345788889887677653 44444444 34555443
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00058 Score=74.11 Aligned_cols=110 Identities=19% Similarity=0.160 Sum_probs=74.9
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHH-HHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHH
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTL-TKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~v 219 (988)
.+.+||+|+|+ |.||..+++++.+.|++ .+|..+|.+. ++ ..|.++.+|++|+.+ ..|++++++|.....+.+
T Consensus 5 ~~~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g~~--~~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~ 81 (288)
T 2nu8_A 5 DKNTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGGTT--HLGLPVFNTVREAVAATGATASVIYVPAPFCKDSI 81 (288)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcccce--eCCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHH
Confidence 34579999998 99999999999998998 4566666432 11 347778889999988 899999999987754444
Q ss_pred HccccchhhhCCCCCEEEecCC-CCHHHHHHHHHHHHhcCCCceEe
Q 001973 220 LYGDLGAVSALSSGASIILSST-VSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st-~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
. +..+. .. +.+|..++ ......+++.+...+ .++.++
T Consensus 82 ~----ea~~~-Gi-~~iVi~t~G~~~~~~~~l~~~A~~--~gv~li 119 (288)
T 2nu8_A 82 L----EAIDA-GI-KLIITITEGIPTLDMLTVKVKLDE--AGVRMI 119 (288)
T ss_dssp H----HHHHT-TC-SEEEECCCCCCHHHHHHHHHHHHH--HTCEEE
T ss_pred H----HHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHH--cCCEEE
Confidence 3 23221 11 34444554 445556677776665 355544
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00089 Score=73.39 Aligned_cols=98 Identities=9% Similarity=0.116 Sum_probs=66.3
Q ss_pred eEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHH----HHhc------CCc--ccCCHHHHhccCcEEEEEcCChH
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTK----FQNV------GGL--IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~----l~~~------G~~--~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
||+|||+|.||.+++..|+..|+ +|.++|+++++++. +.+. ..+ .+++. +++++||+||++.+.+.
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~ 79 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR 79 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence 69999999999999999998888 69999999877643 2221 222 23565 68999999999976553
Q ss_pred ---------------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHH
Q 001973 215 ---------------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLE 251 (988)
Q Consensus 215 ---------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~ 251 (988)
.++++. +.+.+.. ++..++..|+ +.+..-.+.
T Consensus 80 k~G~~r~dl~~~n~~i~~~i~---~~i~~~~-p~a~iiv~tN-Pv~~~t~~~ 126 (308)
T 2d4a_B 80 KPGMTREQLLEANANTMADLA---EKIKAYA-KDAIVVITTN-PVDAMTYVM 126 (308)
T ss_dssp CSSCCTHHHHHHHHHHHHHHH---HHHHHHC-TTCEEEECCS-SHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEeCC-chHHHHHHH
Confidence 234444 3455554 5666666644 444443333
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00044 Score=78.95 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=57.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHH-hcCCcc--cCCHHHHhccCcEEEEEcCChH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQ-NVGGLI--ANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~-~~G~~~--~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
..++|+|||+|.||..++..|...|. +|+++||++++.+++. +.|+.. .+++.+.+.++|+||.|+|.+.
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~ 239 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH 239 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCC
Confidence 34699999999999999999999998 8999999999885554 346543 2467778889999999998654
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00045 Score=74.24 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=67.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-CC--cccCCHHHHh-ccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-GG--LIANSPAEAA-KDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G~--~~~~s~~e~~-~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+++.|+|+|.+|.+++..|++.|. +|++++|++++.+++.+. +. ....+..+.. .++|+||.|+|....-+....
T Consensus 121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~~~~i 200 (272)
T 3pwz_A 121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTADLPPL 200 (272)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTCCCCC
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCCCCCC
Confidence 589999999999999999999995 999999999999888754 21 1112233332 689999999997542110000
Q ss_pred cccchhhhCCCCCEEEecCCCC
Q 001973 222 GDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~ 243 (988)
-...++++.+++|+...+
T Consensus 201 ----~~~~l~~~~~V~DlvY~P 218 (272)
T 3pwz_A 201 ----PADVLGEAALAYELAYGK 218 (272)
T ss_dssp ----CGGGGTTCSEEEESSCSC
T ss_pred ----CHHHhCcCCEEEEeecCC
Confidence 123467899999998773
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00045 Score=72.68 Aligned_cols=95 Identities=21% Similarity=0.284 Sum_probs=70.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeE-EEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTV-IGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.|||+++|+|+||..+++. . ++++ .+|+ ++..++ |...++|++++++++|+|+-|-+.. ++++.
T Consensus 12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel---gv~a~~d~d~lla~pD~VVe~A~~~-av~e~----- 76 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI---PGVVRLDEFQVPSDVSTVVECASPE-AVKEY----- 76 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC---SSSEECSSCCCCTTCCEEEECSCHH-HHHHH-----
T ss_pred cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc---CceeeCCHHHHhhCCCEEEECCCHH-HHHHH-----
Confidence 5899999999999999998 4 7874 6777 443333 7777888998888999999998653 45543
Q ss_pred chhhhCCCCCEEEecCCC---CHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTV---SPGFVSQLERRLQF 256 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~---~p~~~~~l~~~l~~ 256 (988)
+.+.|..|.-+|..|.. .+...+++.+...+
T Consensus 77 -~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~ 110 (253)
T 1j5p_A 77 -SLQILKNPVNYIIISTSAFADEVFRERFFSELKN 110 (253)
T ss_dssp -HHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHT
T ss_pred -HHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHH
Confidence 34567788888888865 55666666666554
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0012 Score=75.49 Aligned_cols=109 Identities=19% Similarity=0.314 Sum_probs=71.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC----------CCe-EEEEeCChhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcC
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS----------NFT-VIGYDVYRPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVT 211 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~----------G~~-V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp 211 (988)
+++||||||+|.||+.++..|.++ +.+ +.++|+++++.+.+. .+....+++.++++ +.|+|+.|+|
T Consensus 9 k~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~tp 87 (444)
T 3mtj_A 9 KPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELIG 87 (444)
T ss_dssp SCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECCC
T ss_pred CcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcCC
Confidence 457999999999999999887642 344 556799998877763 35677889999987 5799999999
Q ss_pred C-hHHHHHHHccccchhhhCCCCCEEEecCC-CCHHHHHHHHHHHHhcCCCceE
Q 001973 212 N-EAQAESVLYGDLGAVSALSSGASIILSST-VSPGFVSQLERRLQFEGKDLKL 263 (988)
Q Consensus 212 ~-~~~~~~vl~~~~~i~~~l~~g~ivId~st-~~p~~~~~l~~~l~~~~~g~~~ 263 (988)
+ ....+.+ ...+..|+-|+.... .......++.+...+ .|..+
T Consensus 88 ~~~~h~~~~-------~~AL~aGKhVvtenkal~a~~~~eL~~~A~~--~gv~l 132 (444)
T 3mtj_A 88 GLEPARELV-------MQAIANGKHVVTANKHLVAKYGNEIFAAAQA--KGVMV 132 (444)
T ss_dssp SSTTHHHHH-------HHHHHTTCEEEECCHHHHHHHHHHHHHHHHH--HTCCE
T ss_pred CchHHHHHH-------HHHHHcCCEEEECCcccCHHHHHHHHHHHHH--hCCeE
Confidence 6 3333322 234456766664433 112234455555554 34544
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00095 Score=76.72 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=74.0
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..++++|+|+|.+|..+|..|+..|.+|+++|+++.+..+....|..+ .+..++...+|+++.+......+. .
T Consensus 264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG~~~vl~------~ 336 (488)
T 3ond_A 264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTGNKDIIM------L 336 (488)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSSCSCSBC------H
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCCChhhhh------H
Confidence 457999999999999999999999999999999999888887777653 567888899999998876544221 1
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
.....++++.+|++.+..
T Consensus 337 e~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 337 DHMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp HHHTTSCTTEEEEESSST
T ss_pred HHHHhcCCCeEEEEcCCC
Confidence 234567889999998865
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00067 Score=74.43 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=62.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHh--CCCe-EEEEeCChhH-HHHH-HhcCCcc-cCCHHHHhc-----cCcEEEEEcCCh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLR--SNFT-VIGYDVYRPT-LTKF-QNVGGLI-ANSPAEAAK-----DVGVLVIMVTNE 213 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~--~G~~-V~v~dr~~~~-~~~l-~~~G~~~-~~s~~e~~~-----~aDvV~l~vp~~ 213 (988)
+++||||||+|.||..++..|.+ .+.+ +.++|+++++ ...+ ...|... .++.+++++ +.|+||+|+|+.
T Consensus 3 ~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~ 82 (312)
T 1nvm_B 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS 82 (312)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChH
Confidence 34799999999999999999966 3445 5567999887 4444 3456653 456666643 579999999965
Q ss_pred HHHHHHHccccchhhhCCC--CCEEEecCCC
Q 001973 214 AQAESVLYGDLGAVSALSS--GASIILSSTV 242 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~--g~ivId~st~ 242 (988)
...+... ..+.. |+.|++.+..
T Consensus 83 ~h~~~a~-------~al~a~~Gk~Vi~ekp~ 106 (312)
T 1nvm_B 83 AHVQNEA-------LLRQAKPGIRLIDLTPA 106 (312)
T ss_dssp HHHHHHH-------HHHHHCTTCEEEECSTT
T ss_pred HHHHHHH-------HHHHhCCCCEEEEcCcc
Confidence 5443332 22333 7888877654
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0014 Score=73.97 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=73.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC--------Ce-EEEEeCChhHHHHHHhc-CC-cccCCHHHHhc--cCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN--------FT-VIGYDVYRPTLTKFQNV-GG-LIANSPAEAAK--DVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G--------~~-V~v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~--~aDvV~l~vp~ 212 (988)
+.||||||+|.||...+..+.+.. .+ |.++|+++++++.+.+. |+ +..+|.+++++ +.|+|++|+|+
T Consensus 6 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~ 85 (390)
T 4h3v_A 6 NLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPG 85 (390)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCG
T ss_pred cCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence 358999999999999888887642 24 55789999999887654 65 46789999986 47999999999
Q ss_pred hHHHHHHHccccchhhhCCCC-CEEEec-CCCCHHHHHHHHHH
Q 001973 213 EAQAESVLYGDLGAVSALSSG-ASIILS-STVSPGFVSQLERR 253 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g-~ivId~-st~~p~~~~~l~~~ 253 (988)
....+.++ ..+..| ++++.. -+.....++++.+.
T Consensus 86 ~~H~~~~~-------~al~aGkhVl~EKPla~t~~ea~~l~~~ 121 (390)
T 4h3v_A 86 DSHAEIAI-------AALEAGKHVLCEKPLANTVAEAEAMAAA 121 (390)
T ss_dssp GGHHHHHH-------HHHHTTCEEEEESSSCSSHHHHHHHHHH
T ss_pred HHHHHHHH-------HHHHcCCCceeecCcccchhHHHHHHHH
Confidence 88666554 122334 455554 25567788888444
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0013 Score=72.49 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=75.9
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCe-EEEEeCChhHHHHHHhc--CCcccCCHHHHh-----------ccCcEEEEEc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFT-VIGYDVYRPTLTKFQNV--GGLIANSPAEAA-----------KDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~--G~~~~~s~~e~~-----------~~aDvV~l~v 210 (988)
|+||||||+ |.||...+..|.+.+.+ |.++|+++++. .+.+. +....++.++++ .+.|+|++|+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~t 81 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICS 81 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECS
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECC
Confidence 479999999 79999999999998876 56789998763 22222 566778998876 4689999999
Q ss_pred CChHHHHHHHccccchhhhCCCC-CEEEecC-CCCHHHHHHHHHHHHhc
Q 001973 211 TNEAQAESVLYGDLGAVSALSSG-ASIILSS-TVSPGFVSQLERRLQFE 257 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~l~~g-~ivId~s-t~~p~~~~~l~~~l~~~ 257 (988)
|+....+.+. ..+..| +++++.- +..+..++++.+...+.
T Consensus 82 P~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 123 (318)
T 3oa2_A 82 PNYLHYPHIA-------AGLRLGCDVICEKPLVPTPEMLDQLAVIERET 123 (318)
T ss_dssp CGGGHHHHHH-------HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHH-------HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHh
Confidence 9987655543 222334 4555542 56788888888877663
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00067 Score=72.71 Aligned_cols=91 Identities=18% Similarity=0.252 Sum_probs=62.0
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhC-CCeEEE-EeCChhHH-----HHHH--hcCCcccCCHHHHhccCcEEEEEcCChHH
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRS-NFTVIG-YDVYRPTL-----TKFQ--NVGGLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~-G~~V~v-~dr~~~~~-----~~l~--~~G~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
++||+|+| +|.||+.+++.+.+. ++++.. +|++.+.. .++. ..|+.+.++++++++++|+||.+++...
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~p~a- 85 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLPEG- 85 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSCHHH-
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCCHHH-
Confidence 47999999 899999999999865 567655 78875321 1111 1266778999999999999999986443
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
+.+.+ . ..+..|.-+|..||.-
T Consensus 86 ~~~~~---~---~al~~G~~vVigTTG~ 107 (272)
T 4f3y_A 86 TLVHL---D---AALRHDVKLVIGTTGF 107 (272)
T ss_dssp HHHHH---H---HHHHHTCEEEECCCCC
T ss_pred HHHHH---H---HHHHcCCCEEEECCCC
Confidence 33333 1 2233466666666654
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0022 Score=70.95 Aligned_cols=68 Identities=15% Similarity=0.270 Sum_probs=52.7
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCC----hhHHH----HHHhcC------CcccCCHHHHhcc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVY----RPTLT----KFQNVG------GLIANSPAEAAKD 202 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~----~~~~~----~l~~~G------~~~~~s~~e~~~~ 202 (988)
+.|||+|+|+ |.+|++++..|+..|+ +|.++|++ .++.+ ++.+.. +...++..+++++
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~ 83 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD 83 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCC
Confidence 4579999998 9999999999999885 89999999 54443 244321 1234678899999
Q ss_pred CcEEEEEcCC
Q 001973 203 VGVLVIMVTN 212 (988)
Q Consensus 203 aDvV~l~vp~ 212 (988)
||+||++...
T Consensus 84 aD~Vi~~ag~ 93 (329)
T 1b8p_A 84 ADVALLVGAR 93 (329)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEEeCCC
Confidence 9999998653
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0011 Score=69.47 Aligned_cols=90 Identities=8% Similarity=0.088 Sum_probs=64.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc----cCCHH---HH-hccCcEEEEEcCChHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI----ANSPA---EA-AKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~----~~s~~---e~-~~~aDvV~l~vp~~~~~~ 217 (988)
.++|.|+|+|.+|..++..|.+.|+ |+++|+++++++.+. .|..+ .++.. ++ ++++|.|+++++++..-.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~ 86 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI 86 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHH
Confidence 3689999999999999999999999 999999999998887 66542 22222 23 578999999999875333
Q ss_pred HHHccccchhhhCCCC-CEEEecCC
Q 001973 218 SVLYGDLGAVSALSSG-ASIILSST 241 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g-~ivId~st 241 (988)
.+. .....+.++ .+++..++
T Consensus 87 ~~~----~~a~~~~~~~~iia~~~~ 107 (234)
T 2aef_A 87 HCI----LGIRKIDESVRIIAEAER 107 (234)
T ss_dssp HHH----HHHHHHCSSSEEEEECSS
T ss_pred HHH----HHHHHHCCCCeEEEEECC
Confidence 332 233445555 56665544
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0016 Score=71.66 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=75.8
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCe-EEEEeCChhHHHHHHhc--CCcccCCHHHHh----------ccCcEEEEEcC
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFT-VIGYDVYRPTLTKFQNV--GGLIANSPAEAA----------KDVGVLVIMVT 211 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~--G~~~~~s~~e~~----------~~aDvV~l~vp 211 (988)
|+||||||+ |.||...+..|.+.+.+ |.++|+++++. .+.+. +....++.++++ .+.|+|++|+|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP 81 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP 81 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence 479999999 78999999999998877 56789998873 22222 566788898887 57899999999
Q ss_pred ChHHHHHHHccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHhc
Q 001973 212 NEAQAESVLYGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQFE 257 (988)
Q Consensus 212 ~~~~~~~vl~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~~ 257 (988)
+....+.+. ..+..|+ +++.. -+..+..++++.+...+.
T Consensus 82 ~~~H~~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 122 (312)
T 3o9z_A 82 NHLHYPQIR-------MALRLGANALSEKPLVLWPEEIARLKELEART 122 (312)
T ss_dssp GGGHHHHHH-------HHHHTTCEEEECSSSCSCHHHHHHHHHHHHHH
T ss_pred chhhHHHHH-------HHHHCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 987655443 2233444 44443 256788888888877663
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0013 Score=71.07 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=69.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc------CC--ccc--CCHHHHhccCcEEEEEcCChH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV------GG--LIA--NSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~------G~--~~~--~s~~e~~~~aDvV~l~vp~~~ 214 (988)
.+++.|+|+|.+|.+++..|++.|. +|+++||++++.+++.+. +. ... +++.+.+.++|+||-|+|...
T Consensus 127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm 206 (283)
T 3jyo_A 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGM 206 (283)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTTS
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCCC
Confidence 3589999999999999999999998 799999999998876542 11 122 377788889999999998532
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
.-..-. .--...++++.+++|+.-.+
T Consensus 207 ~~~~~~---pi~~~~l~~~~~v~DlvY~P 232 (283)
T 3jyo_A 207 PAHPGT---AFDVSCLTKDHWVGDVVYMP 232 (283)
T ss_dssp TTSCSC---SSCGGGCCTTCEEEECCCSS
T ss_pred CCCCCC---CCCHHHhCCCCEEEEecCCC
Confidence 110000 00123467889999998754
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0012 Score=70.96 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=66.1
Q ss_pred CCCCeEEEEc-cchHHHHHHHHHHhC-CCeE-EEEeCChhH-----HHHHH---hcCCcccCCHHHHhccCcEEEEEcCC
Q 001973 144 NSVTRVGFIG-LGAMGFGMATHLLRS-NFTV-IGYDVYRPT-----LTKFQ---NVGGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 144 ~~~~kIgiIG-~G~mG~~lA~~L~~~-G~~V-~v~dr~~~~-----~~~l~---~~G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
++++||+|+| +|.||+.+++.+.+. ++++ -++|+++.. +.++. ..|+.+++++++++.++|+||-+.+.
T Consensus 19 ~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~p 98 (288)
T 3ijp_A 19 PGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQP 98 (288)
T ss_dssp --CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSCH
T ss_pred cCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCCH
Confidence 3457999999 999999999998754 6774 456887432 11121 24677889999999999999988754
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecCCCC-HHHHHHHHHH
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSSTVS-PGFVSQLERR 253 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~st~~-p~~~~~l~~~ 253 (988)
.. +.+.+ ...+..|.-+|..||.- +....++.+.
T Consensus 99 ~a-~~~~~------~~~l~~Gv~vViGTTG~~~e~~~~L~~a 133 (288)
T 3ijp_A 99 QA-SVLYA------NYAAQKSLIHIIGTTGFSKTEEAQIADF 133 (288)
T ss_dssp HH-HHHHH------HHHHHHTCEEEECCCCCCHHHHHHHHHH
T ss_pred HH-HHHHH------HHHHHcCCCEEEECCCCCHHHHHHHHHH
Confidence 33 33332 12234566677766654 3343344443
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0021 Score=69.62 Aligned_cols=110 Identities=20% Similarity=0.147 Sum_probs=72.9
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHHHc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl~ 221 (988)
+.+||+|+|+ |.||..+++++.+.|++ .+|..+|..... ...|.++.+|+.|+.+ .+|++++++|.... .+++
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~-~~~~- 81 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVPAPAA-ADAA- 81 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECCCHHHH-HHHH-
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCCCc-eECCEEeeCCHHHHhhcCCCCEEEEecCHHHH-HHHH-
Confidence 4579999998 99999999999999999 445655543100 1247788899999988 89999999998664 3333
Q ss_pred cccchhhhCCCCCEEEecCCC-CHHHHHHHHHHHHhcCCCceEe
Q 001973 222 GDLGAVSALSSGASIILSSTV-SPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~-~p~~~~~l~~~l~~~~~g~~~l 264 (988)
++..+. .- +.+|..++. .....+++.+...+ .++.++
T Consensus 82 --~ea~~~-Gi-~~vVi~t~G~~~~~~~~l~~~a~~--~gi~vi 119 (288)
T 1oi7_A 82 --LEAAHA-GI-PLIVLITEGIPTLDMVRAVEEIKA--LGSRLI 119 (288)
T ss_dssp --HHHHHT-TC-SEEEECCSCCCHHHHHHHHHHHHH--HTCEEE
T ss_pred --HHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHH--cCCEEE
Confidence 233322 11 324444544 44445566666655 355544
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0024 Score=66.71 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=54.7
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCC-cc-----cCCHHHHhccCcEEEEEcCC
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGG-LI-----ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~-~~-----~~s~~e~~~~aDvV~l~vp~ 212 (988)
+.|+|.|.|. |.+|..+++.|++.|++|++.+|++++.+.+...++ .. .+++.+++.++|+||.+...
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~ 94 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGS 94 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence 4579999997 999999999999999999999999999988877665 32 24455666777888777653
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0017 Score=74.06 Aligned_cols=88 Identities=10% Similarity=0.074 Sum_probs=60.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC---eEEEEeCChhHHHHHHhc-------CCcc-------cCCHHHHhcc--CcEEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF---TVIGYDVYRPTLTKFQNV-------GGLI-------ANSPAEAAKD--VGVLV 207 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~-------G~~~-------~~s~~e~~~~--aDvV~ 207 (988)
+||.|+|+|.+|..++..|++.|. +|.++||++++.+++.+. .+.. .+++.+++++ +|+||
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi 81 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL 81 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence 599999999999999999999983 899999999998876542 1211 1234455666 78888
Q ss_pred EEcCChHHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 208 l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
.|.|.... ..+. + ..+..|.-++|.+.
T Consensus 82 n~ag~~~~-~~v~---~---a~l~~g~~vvD~a~ 108 (405)
T 4ina_A 82 NIALPYQD-LTIM---E---ACLRTGVPYLDTAN 108 (405)
T ss_dssp ECSCGGGH-HHHH---H---HHHHHTCCEEESSC
T ss_pred ECCCcccC-hHHH---H---HHHHhCCCEEEecC
Confidence 88875432 2222 1 12234566777644
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0016 Score=69.09 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=62.3
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
...++.|||.|. +|.++|..|...|.+|++++++ +.++++.++++|+||.+++.+.. +.
T Consensus 149 ~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~-- 208 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGRPGF----LN-- 208 (276)
T ss_dssp CSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSCTTC----BC--
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCCCcc----cc--
Confidence 346999999985 8999999999999999999864 46788899999999999998652 21
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 209 ---~~~vk~GavVIDvgi~ 224 (276)
T 3ngx_A 209 ---REMVTPGSVVIDVGIN 224 (276)
T ss_dssp ---GGGCCTTCEEEECCCE
T ss_pred ---HhhccCCcEEEEeccC
Confidence 2346899999998875
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00054 Score=73.71 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=61.6
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHh-CCCeEE-EEeCChhHH--HHH------HhcCCcccCCHHHHhccCcEEEEEcCCh
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLR-SNFTVI-GYDVYRPTL--TKF------QNVGGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~-~G~~V~-v~dr~~~~~--~~l------~~~G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
++|||+|+|+ |.||..++..+.+ .|+++. ++|+++++. ..+ ...++...++++++++++|+|+-+.+.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~p- 82 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRP- 82 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCH-
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCCh-
Confidence 4479999998 9999999998874 578876 788876431 111 112445567788888899999955543
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCC-CCHHHHHHH
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSST-VSPGFVSQL 250 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st-~~p~~~~~l 250 (988)
....+.+ ...+..|.-+|..+| ..+....++
T Consensus 83 ~~~~~~~------~~a~~~G~~vVigTtG~~~e~~~~L 114 (273)
T 1dih_A 83 EGTLNHL------AFCRQHGKGMVIGTTGFDEAGKQAI 114 (273)
T ss_dssp HHHHHHH------HHHHHTTCEEEECCCCCCHHHHHHH
T ss_pred HHHHHHH------HHHHhCCCCEEEECCCCCHHHHHHH
Confidence 3334333 122334555665554 444443333
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0017 Score=70.45 Aligned_cols=93 Identities=9% Similarity=-0.012 Sum_probs=65.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CC--------c-ccCCHHHHhccCcEEEEEcCChHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GG--------L-IANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~--------~-~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
.+++.|+|.|.+|.+++..|++.| +|+++||+.++.+++.+. +. . ...+..+....+|+||.+++....
T Consensus 128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~~~ 206 (287)
T 1nvt_A 128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMY 206 (287)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCT
T ss_pred CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCCCC
Confidence 358999999999999999999999 999999999888776532 10 0 011224556789999999986542
Q ss_pred H--HHHHccccchhhhCCCCCEEEecCCC
Q 001973 216 A--ESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 216 ~--~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
- +..... -...+.++.+++|++..
T Consensus 207 ~~~~~~~~~---~~~~l~~~~~v~Dv~y~ 232 (287)
T 1nvt_A 207 PNIDVEPIV---KAEKLREDMVVMDLIYN 232 (287)
T ss_dssp TCCSSCCSS---CSTTCCSSSEEEECCCS
T ss_pred CCCCCCCCC---CHHHcCCCCEEEEeeeC
Confidence 1 000000 12456789999999985
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0017 Score=72.21 Aligned_cols=103 Identities=14% Similarity=0.034 Sum_probs=72.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEE-EEeCCh-hHHHHHHh----cC--CcccCCHHHHhcc--CcEEEEEcCChHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVI-GYDVYR-PTLTKFQN----VG--GLIANSPAEAAKD--VGVLVIMVTNEAQA 216 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~-v~dr~~-~~~~~l~~----~G--~~~~~s~~e~~~~--aDvV~l~vp~~~~~ 216 (988)
+||||||+|.+|...+..| ..+.+|. ++|+++ ++.+.+.+ .| ....+|+++++++ .|+|++|+|+....
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~ 81 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLNG 81 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHHH
T ss_pred eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchHH
Confidence 6999999999998888877 6677755 689887 34444332 24 3678899999874 89999999987755
Q ss_pred HHHHccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHhc
Q 001973 217 ESVLYGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQFE 257 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~~ 257 (988)
+.+. ..+..|+ +++.. -+.....++++.+...+.
T Consensus 82 ~~~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 117 (337)
T 3ip3_A 82 KILL-------EALERKIHAFVEKPIATTFEDLEKIRSVYQKV 117 (337)
T ss_dssp HHHH-------HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 5443 2233443 44443 255678888888877663
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0035 Score=69.53 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=54.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCC-CeE-EEEeCChhHHHHHHh-cC------------------CcccCCHHHHhccCcE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN-FTV-IGYDVYRPTLTKFQN-VG------------------GLIANSPAEAAKDVGV 205 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G-~~V-~v~dr~~~~~~~l~~-~G------------------~~~~~s~~e~~~~aDv 205 (988)
+||||+|+|.||..+++.|.+.. .+| .+.|++++....+.+ .| ..+..++.+++.++|+
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv 82 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI 82 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence 59999999999999999998764 464 556888777765543 23 2445688888889999
Q ss_pred EEEEcCChHHHHH
Q 001973 206 LVIMVTNEAQAES 218 (988)
Q Consensus 206 V~l~vp~~~~~~~ 218 (988)
|++|+|.....+.
T Consensus 83 V~~aTp~~~h~~~ 95 (334)
T 2czc_A 83 IVDATPGGIGAKN 95 (334)
T ss_dssp EEECCSTTHHHHH
T ss_pred EEECCCccccHHH
Confidence 9999998764443
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00036 Score=76.15 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=64.4
Q ss_pred CCeEEEEccchH-HHHHHHHHHhCCCeEEEEeCChhH----HHHHHhcCCcc-----c--CCHHHHhccCcEEEEEcCCh
Q 001973 146 VTRVGFIGLGAM-GFGMATHLLRSNFTVIGYDVYRPT----LTKFQNVGGLI-----A--NSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 146 ~~kIgiIG~G~m-G~~lA~~L~~~G~~V~v~dr~~~~----~~~l~~~G~~~-----~--~s~~e~~~~aDvV~l~vp~~ 213 (988)
..++.|||.|.| |..+|..|...|.+|++.||+..+ .+.+...-... + .++.+.+.++|+||.+++.+
T Consensus 177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p 256 (320)
T 1edz_A 177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSE 256 (320)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCT
T ss_pred CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECCCCC
Confidence 469999999976 999999999999999999998332 22221111111 2 46788999999999999976
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.- ++. ...+++|.+|||.+..
T Consensus 257 ~~---vI~-----~e~vk~GavVIDVgi~ 277 (320)
T 1edz_A 257 NY---KFP-----TEYIKEGAVCINFACT 277 (320)
T ss_dssp TC---CBC-----TTTSCTTEEEEECSSS
T ss_pred cc---eeC-----HHHcCCCeEEEEcCCC
Confidence 41 121 2335789999999864
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.011 Score=65.30 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=72.5
Q ss_pred CCeEEEEccchHHHH-HHHHHHhCCCeEEEEeCCh--hHHHHHHhcCCccc--CCHHHHh-ccCcEEEEEc--C-ChHHH
Q 001973 146 VTRVGFIGLGAMGFG-MATHLLRSNFTVIGYDVYR--PTLTKFQNVGGLIA--NSPAEAA-KDVGVLVIMV--T-NEAQA 216 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~-lA~~L~~~G~~V~v~dr~~--~~~~~l~~~G~~~~--~s~~e~~-~~aDvV~l~v--p-~~~~~ 216 (988)
++||.|||.|.+|.+ +|+.|.+.|++|+++|+++ ...+.|.+.|+.+. .++.+.. .++|+|+.+- | +...+
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~ 83 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV 83 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence 469999999999995 9999999999999999864 35677888888654 3445544 4799999863 2 22223
Q ss_pred HHHHc------cccch-hhhC-CCCCEEEecCCCCHHHHH-HHHHHHHhcCC
Q 001973 217 ESVLY------GDLGA-VSAL-SSGASIILSSTVSPGFVS-QLERRLQFEGK 259 (988)
Q Consensus 217 ~~vl~------~~~~i-~~~l-~~g~ivId~st~~p~~~~-~l~~~l~~~~~ 259 (988)
+.... +.-++ ...+ +...+|..+.|..-.|+. -++..+...+.
T Consensus 84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~ 135 (326)
T 3eag_A 84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL 135 (326)
T ss_dssp HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 33221 00112 2222 233456666565555555 45666666443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0028 Score=68.20 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=52.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc----cCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI----ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~----~~s~~e~~~~aDvV~l~vp~ 212 (988)
+|||.|.|+|.+|+.++..|.+.||+|++.+|++++.+.+...++.. .+++. +.++|+||-+...
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~ 73 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP 73 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence 36999999999999999999999999999999999888877666432 12222 5678888877753
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.002 Score=74.76 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=55.7
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcc----cCC---HHHH-hccCcEEEEEcCChH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLI----ANS---PAEA-AKDVGVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~----~~s---~~e~-~~~aDvV~l~vp~~~ 214 (988)
+.|||-|+|+|.+|..+|+.|.+.||+|++.|.++++++.+.+. +... .++ +.++ +++||+++.+++++.
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De 80 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE 80 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence 45799999999999999999999999999999999999988753 4432 222 2333 578999887777764
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0029 Score=70.74 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchh--hhc-cccccccCCCCc--chHHHHHHhH----HHHHHH
Q 001973 5 LLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWI--FKN-YIPNLLRGDAKL--HFLNAFIQNL----GIALDM 75 (988)
Q Consensus 5 ~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~--~~~-~~~~~~~~~~~~--f~l~l~~KDl----~la~~~ 75 (988)
........++.|++.++++.|++++.+.+.+..+...++. .+. ..+.|+.+.+.| +....+.||+ +.+.++
T Consensus 229 ~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~d~~~~~e~~~~~~~~D~~~~~g~~~~~ 308 (359)
T 1bg6_A 229 SVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGPINLNTRYFFEDVSTGLVPLSEL 308 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBCCSSSCCHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHhcchhhcCCCCCCCCCccceecCcCccHHHHHHH
Confidence 3456778899999999999999999999988776554442 011 123355444445 4445899999 899999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhhCc
Q 001973 76 AKTLAFPLPLLAVAHQQLILGLSHA 100 (988)
Q Consensus 76 a~~~g~~~p~~~~~~~~~~~a~~~G 100 (988)
|+++|+|+|+.+.+.+.++.....+
T Consensus 309 a~~~gv~~P~~~~l~~~~~~~~~~~ 333 (359)
T 1bg6_A 309 GRAVNVPTPLIDAVLDLISSLIDTD 333 (359)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCCchHHHHHHHHHHHHHCCC
Confidence 9999999999999999998776553
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0023 Score=70.99 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=60.7
Q ss_pred CeEEEEccchHHHHHHHHHHhC-CCeE-EEEeCChhHHHHHHh-------------------cCCcccCCHHHHhccCcE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS-NFTV-IGYDVYRPTLTKFQN-------------------VGGLIANSPAEAAKDVGV 205 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~-------------------~G~~~~~s~~e~~~~aDv 205 (988)
+||||+|+|+||..+++.|.++ ++++ .+.|++++....+.. .++.+..++.+...++|+
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv 81 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI 81 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence 5999999999999999999874 4565 445777554433222 233333466777789999
Q ss_pred EEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 206 LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 206 V~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
||.|+|.....+... .++..|..||+.+...
T Consensus 82 V~~atp~~~~~~~a~-------~~l~aG~~VId~sp~~ 112 (337)
T 1cf2_P 82 VIDCTPEGIGAKNLK-------MYKEKGIKAIFQGGEK 112 (337)
T ss_dssp EEECCSTTHHHHHHH-------HHHHHTCCEEECTTSC
T ss_pred EEECCCchhhHHHHH-------HHHHcCCEEEEecCCC
Confidence 999999876443321 2233466688877764
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0039 Score=67.74 Aligned_cols=109 Identities=18% Similarity=0.155 Sum_probs=74.2
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHH-HHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTL-TKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl 220 (988)
...+|.|+|+ |.||..++++|.+.|++ .+|..+|.+. ++ -.|.++..|+.++.+ .+|++++++|.....+.+.
T Consensus 12 ~~~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~~v~ 88 (294)
T 2yv1_A 12 ENTKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQN--VHGVPVFDTVKEAVKETDANASVIFVPAPFAKDAVF 88 (294)
T ss_dssp TTCCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCEEEEccCHHHHHHHHH
Confidence 3468999999 99999999999999999 6677777642 11 147788899999988 8999999999876444332
Q ss_pred ccccchhhhCCCCCEEEecCC-CCHHHHHHHHHHHHhcCCCceEe
Q 001973 221 YGDLGAVSALSSGASIILSST-VSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st-~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
+..+. .. +.+|..++ ......+++.+...+ .++.++
T Consensus 89 ----ea~~~-Gi-~~vVi~t~G~~~~~~~~l~~~A~~--~gi~vi 125 (294)
T 2yv1_A 89 ----EAIDA-GI-ELIVVITEHIPVHDTMEFVNYAED--VGVKII 125 (294)
T ss_dssp ----HHHHT-TC-SEEEECCSCCCHHHHHHHHHHHHH--HTCEEE
T ss_pred ----HHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHH--cCCEEE
Confidence 33332 11 32444444 444455667666655 355544
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0024 Score=71.12 Aligned_cols=88 Identities=13% Similarity=0.067 Sum_probs=57.6
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHh--------cCCcccCCHHHHhccCcEEEEEcCChHH
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQN--------VGGLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~--------~G~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
++||+|+| .|++|..+.+.|.++.+ ++.....+.+.-.++.+ ....+ .+..+ ..++|+||+|+|....
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~-~~~~~-~~~vDvV~~a~g~~~s 81 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKF-VPPEK-LEPADILVLALPHGVF 81 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBC-BCGGG-CCCCSEEEECCCTTHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccc-cchhH-hcCCCEEEEcCCcHHH
Confidence 47999999 79999999999998764 76665543322111111 11122 23333 4789999999998764
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.+.+ ..++..|..|||.|+-
T Consensus 82 ~~~a-------~~~~~aG~~VId~Sa~ 101 (345)
T 2ozp_A 82 AREF-------DRYSALAPVLVDLSAD 101 (345)
T ss_dssp HHTH-------HHHHTTCSEEEECSST
T ss_pred HHHH-------HHHHHCCCEEEEcCcc
Confidence 3322 2334678899999974
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0026 Score=68.31 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=60.6
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHH--HHhccCcEEEEEcCChHHHHHHHc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPA--EAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~--e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
...++.|||.|. +|.++|..|...|.+|++++++.. +++ +.++++|+||.+++.+.. +.
T Consensus 164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p~~----I~ 225 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQPGY----VK 225 (300)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCTTC----BC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCCCCC----Cc
Confidence 346999999887 799999999999999999997432 344 788999999999997652 21
Q ss_pred cccchhhhCCCCCEEEecCCC
Q 001973 222 GDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 226 -----~~~vk~GavVIDvgi~ 241 (300)
T 4a26_A 226 -----GEWIKEGAAVVDVGTT 241 (300)
T ss_dssp -----GGGSCTTCEEEECCCE
T ss_pred -----HHhcCCCcEEEEEecc
Confidence 2346899999998865
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.008 Score=61.69 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=51.9
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-----cCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-----ANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-----~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||.|.| .|.+|..++..|++.|++|++.+|++++.+.+. .++.. .+...+++.++|+||.+...+
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGIS 72 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence 5899999 599999999999999999999999998887664 34321 111126778899999888653
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0038 Score=67.56 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=49.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHH----HHHhc----C--C--cccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLT----KFQNV----G--G--LIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~----~l~~~----G--~--~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
|||+|||+|.+|+++|..|+.++. ++.+||+++++++ +|.+. + . ...++. +.+++||+|+++-..
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~-~~~~~aDvVvitAG~ 79 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH-HHhCCCCEEEEecCC
Confidence 699999999999999999998874 7999999986543 34331 1 1 123344 568899999998764
Q ss_pred h
Q 001973 213 E 213 (988)
Q Consensus 213 ~ 213 (988)
+
T Consensus 80 p 80 (294)
T 2x0j_A 80 A 80 (294)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.003 Score=67.98 Aligned_cols=91 Identities=5% Similarity=-0.110 Sum_probs=64.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcC-CcccCCHHHHhccCcEEEEEcCChHHH--HHHHcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVG-GLIANSPAEAAKDVGVLVIMVTNEAQA--ESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G-~~~~~s~~e~~~~aDvV~l~vp~~~~~--~~vl~~ 222 (988)
.++.|+|+|.+|.+++..|.+.|. +|++++|++++++++.+.= ....+++.+ + ++|+||.++|....- ....
T Consensus 123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~p-- 198 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGESP-- 198 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCCS--
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccCC--
Confidence 589999999999999999999998 8999999999998876531 111122223 3 899999999863210 0000
Q ss_pred ccchhhhCCCCCEEEecCCCC
Q 001973 223 DLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~ 243 (988)
--...++++.+++|+--..
T Consensus 199 --i~~~~l~~~~~v~DlvY~P 217 (282)
T 3fbt_A 199 --VDKEVVAKFSSAVDLIYNP 217 (282)
T ss_dssp --SCHHHHTTCSEEEESCCSS
T ss_pred --CCHHHcCCCCEEEEEeeCC
Confidence 0123356789999987654
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0011 Score=69.65 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=48.9
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhcCCcc-------cCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~vp~ 212 (988)
|++|.|.| .|.+|..++..|++.| ++|++++|++++.+.+...++.. .+++.++++.+|+||.+...
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 46899999 6999999999999999 99999999988765433222211 12334556777888777654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0054 Score=63.27 Aligned_cols=66 Identities=11% Similarity=0.075 Sum_probs=52.7
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-----cCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-----ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-----~~s~~e~~~~aDvV~l~vp~ 212 (988)
|||.|.|. |.+|..++..|++.|++|++.+|++++.+.+...++.. .+...+++.++|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 58999997 99999999999999999999999999888775555432 11112677889999988754
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.01 Score=64.81 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=49.8
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCC--eEEEEeC--ChhHHHH----HHhc-----CCcccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNF--TVIGYDV--YRPTLTK----FQNV-----GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~--~V~v~dr--~~~~~~~----l~~~-----G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
|||+|+| +|.+|++++..|+..|+ ++.++|+ ++++++. +.+. ...+..+..++++++|+||++...
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~ 80 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence 5999999 99999999999998886 7999999 8765432 2221 122222336778999999999864
Q ss_pred h
Q 001973 213 E 213 (988)
Q Consensus 213 ~ 213 (988)
+
T Consensus 81 ~ 81 (303)
T 1o6z_A 81 P 81 (303)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0075 Score=66.89 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=59.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCC-CeE-EEEeCChhHHHHHH-hcCCcc-----------------cCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN-FTV-IGYDVYRPTLTKFQ-NVGGLI-----------------ANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G-~~V-~v~dr~~~~~~~l~-~~G~~~-----------------~~s~~e~~~~aDvV 206 (988)
+||||+|+|+||..+++.|.++. .+| .+.|++++....+. ..|... .+++++..+++|+|
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV 81 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV 81 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence 58999999999999999998764 454 45688766554333 224333 22444555679999
Q ss_pred EEEcCChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 207 VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 207 ~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
|.|+|.....+.. ..++..|..+|+.|.-
T Consensus 82 ~~aTp~~~s~~~a-------~~~~~aG~kvV~~sa~ 110 (340)
T 1b7g_O 82 VDTTPNGVGAQYK-------PIYLQLQRNAIFQGGE 110 (340)
T ss_dssp EECCSTTHHHHHH-------HHHHHTTCEEEECTTS
T ss_pred EECCCCchhHHHH-------HHHHHcCCeEEEeCCC
Confidence 9999986643322 1233457778887765
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0052 Score=66.84 Aligned_cols=111 Identities=18% Similarity=0.131 Sum_probs=74.1
Q ss_pred CCCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHH-HHHHhcCCcccCCHHHHhc--c-CcEEEEEcCChHHHH
Q 001973 143 SNSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTL-TKFQNVGGLIANSPAEAAK--D-VGVLVIMVTNEAQAE 217 (988)
Q Consensus 143 ~~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~G~~~~~s~~e~~~--~-aDvV~l~vp~~~~~~ 217 (988)
.....+|.|+|+ |.||..++++|.+.|++ .+|..+|.+. ++ -.|.++.+|+.++.+ . +|++++++|.....+
T Consensus 10 ~~~~~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~~ 86 (297)
T 2yv2_A 10 VDSETRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSE--VHGVPVYDSVKEALAEHPEINTSIVFVPAPFAPD 86 (297)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred hCCCCEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCCEEEEecCHHHHHH
Confidence 344568999998 99999999999999999 6667666542 11 147888899999887 5 999999999876444
Q ss_pred HHHccccchhhhCCCCCEEEecCCC-CHHHHHHHHHHHHhcCCCceEe
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTV-SPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~-~p~~~~~l~~~l~~~~~g~~~l 264 (988)
.+. +..+. .. +.+|..|+. .....+++.+...+ .++.++
T Consensus 87 ~v~----ea~~~-Gi-~~vVi~t~G~~~~~~~~l~~~A~~--~gi~vi 126 (297)
T 2yv2_A 87 AVY----EAVDA-GI-RLVVVITEGIPVHDTMRFVNYARQ--KGATII 126 (297)
T ss_dssp HHH----HHHHT-TC-SEEEECCCCCCHHHHHHHHHHHHH--HTCEEE
T ss_pred HHH----HHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHH--cCCEEE
Confidence 332 33332 11 324444544 44445667666655 355544
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0043 Score=69.41 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=58.9
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHh-----cC-----CcccCCHHHHhccCcEEEEEcCC
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQN-----VG-----GLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~-----~G-----~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
+++||+|+| .|++|..+.+.|.++.. ++.......+.-.++.. .| ..+. + ++..+++|+||+|+|.
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~~vDvVf~atp~ 92 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DADFSTVDAVFCCLPH 92 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCCGGGCSEEEECCCT
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhHhcCCCEEEEcCCc
Confidence 346999999 89999999999998764 77766543322112211 11 1121 1 3445689999999998
Q ss_pred hHHHHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 213 EAQAESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 213 ~~~~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
....+.+- .+ ..|..+||.|+-.
T Consensus 93 ~~s~~~a~-------~~-~aG~~VId~sa~~ 115 (359)
T 1xyg_A 93 GTTQEIIK-------EL-PTALKIVDLSADF 115 (359)
T ss_dssp TTHHHHHH-------TS-CTTCEEEECSSTT
T ss_pred hhHHHHHH-------HH-hCCCEEEECCccc
Confidence 76544332 33 5688999999853
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0064 Score=70.36 Aligned_cols=113 Identities=15% Similarity=0.104 Sum_probs=72.0
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh----hHHHHHHhcCCccc--CCHHHHhcc-CcEEEEEcCCh---H
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR----PTLTKFQNVGGLIA--NSPAEAAKD-VGVLVIMVTNE---A 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~----~~~~~l~~~G~~~~--~s~~e~~~~-aDvV~l~vp~~---~ 214 (988)
+.++|.|||+|..|.+.|+.|.+.|++|+++|+++ ...+.|.+.|+.+. ..+.+...+ +|+|+++..-+ .
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~~p 87 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNP 87 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTTSH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCCCh
Confidence 45799999999999999999999999999999854 34567888888653 234445566 89998874322 2
Q ss_pred HHHHHHc------cccchhhhCCCCCEEEecCCCCHHHHHH-HHHHHHhc
Q 001973 215 QAESVLY------GDLGAVSALSSGASIILSSTVSPGFVSQ-LERRLQFE 257 (988)
Q Consensus 215 ~~~~vl~------~~~~i~~~l~~g~ivId~st~~p~~~~~-l~~~l~~~ 257 (988)
.+..... +.-+++..+.+..+|..+.|..-.|+.. ++..+...
T Consensus 88 ~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~ 137 (451)
T 3lk7_A 88 MVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAG 137 (451)
T ss_dssp HHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 2222211 1112222233455666666665555554 45666553
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0049 Score=66.22 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=62.7
Q ss_pred CCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..++.|||.|. +|.++|..|...|.+|++.+++ +.++.+.++++|+||.+++.+.. +.
T Consensus 165 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~--- 223 (301)
T 1a4i_A 165 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPEM----VK--- 223 (301)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----BC---
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCccc----CC---
Confidence 47999999996 7999999999999999999854 45788899999999999998662 21
Q ss_pred chhhhCCCCCEEEecCCCC
Q 001973 225 GAVSALSSGASIILSSTVS 243 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~ 243 (988)
...+++|.+|||.+...
T Consensus 224 --~~~vk~GavVIDVgi~~ 240 (301)
T 1a4i_A 224 --GEWIKPGAIVIDCGINY 240 (301)
T ss_dssp --GGGSCTTCEEEECCCBC
T ss_pred --HHHcCCCcEEEEccCCC
Confidence 23467999999998864
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.01 Score=65.31 Aligned_cols=117 Identities=20% Similarity=0.305 Sum_probs=69.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhC---------CCe-EEEEeCChhHHH------HHHh--cCCcccC--CHHHHhc--cC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS---------NFT-VIGYDVYRPTLT------KFQN--VGGLIAN--SPAEAAK--DV 203 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~---------G~~-V~v~dr~~~~~~------~l~~--~G~~~~~--s~~e~~~--~a 203 (988)
|+||||||+|.||+.++..|.++ +.+ +-++|+++++.+ .+.. ......+ |+.++++ +.
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~i 81 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADY 81 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCC
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCC
Confidence 36999999999999999999875 445 455688754321 1211 1223444 8999886 48
Q ss_pred cEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHH--HHHHHHHHHHhcCCCceEe-cCcc
Q 001973 204 GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPG--FVSQLERRLQFEGKDLKLV-DAPV 268 (988)
Q Consensus 204 DvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~--~~~~l~~~l~~~~~g~~~l-dapv 268 (988)
|+|+.|+|+.....+.. +-+...+..|+-|+..+. .|- ...++.+...+ .+..++ .+.+
T Consensus 82 DvVv~~tp~~~h~~~a~---~~~~~aL~aGkhVv~~NK-kpla~~~~eL~~~A~~--~g~~~~~ea~v 143 (327)
T 3do5_A 82 DVLIEASVTRVDGGEGV---NYIREALKRGKHVVTSNK-GPLVAEFHGLMSLAER--NGVRLMYEATV 143 (327)
T ss_dssp SEEEECCCCC----CHH---HHHHHHHTTTCEEEECCS-HHHHHHHHHHHHHHHH--TTCCEECGGGS
T ss_pred CEEEECCCCcccchhHH---HHHHHHHHCCCeEEecCc-hhhHHHHHHHHHHHHh--hCCcEEEEEEe
Confidence 99999999864210011 122445667877776544 332 34455555444 455543 3443
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.023 Score=59.83 Aligned_cols=87 Identities=18% Similarity=0.278 Sum_probs=55.2
Q ss_pred CeEEEEcc-chHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhcCCcccCCHHHHhc-cCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQNVGGLIANSPAEAAK-DVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~G~~~~~s~~e~~~-~aDvV~l~vp~~~~~~~vl~~ 222 (988)
|||+|+|+ |.||+.++..+.+. ++++. ++|++ +++.++.. .+|+++-+.+... +.+.+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p~a-~~~~~-- 62 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTHPDV-VMGNL-- 62 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSCTTT-HHHHH--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccChHH-HHHHH--
Confidence 48999996 99999999999865 89976 55664 34555554 7899996664433 34333
Q ss_pred ccchhhhCCCCCEEEecCC-CCHHHHHHHHHHHH
Q 001973 223 DLGAVSALSSGASIILSST-VSPGFVSQLERRLQ 255 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st-~~p~~~~~l~~~l~ 255 (988)
...+..|.-+|..|| ..++....+.+...
T Consensus 63 ----~~a~~~g~~~VigTTG~~~e~~~~l~~aa~ 92 (245)
T 1p9l_A 63 ----EFLIDNGIHAVVGTTGFTAERFQQVESWLV 92 (245)
T ss_dssp ----HHHHHTTCEEEECCCCCCHHHHHHHHHHHH
T ss_pred ----HHHHHcCCCEEEcCCCCCHHHHHHHHHHHH
Confidence 122334555555555 44444445554443
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0023 Score=70.75 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=58.7
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhC-CCeEEEEeCCh---hHHHHHH-------hc-CCcccC--CHHHHhccCcEEEEEc
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRS-NFTVIGYDVYR---PTLTKFQ-------NV-GGLIAN--SPAEAAKDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~-G~~V~v~dr~~---~~~~~l~-------~~-G~~~~~--s~~e~~~~aDvV~l~v 210 (988)
|+||+|+| .|++|..+.+.|.++ .+++..+..+. +.-+.+. .. ...+.+ +..+..+++|+||+|+
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~ 83 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLAT 83 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECS
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECC
Confidence 46999999 699999999999985 45777664333 2212222 11 222222 4445448999999999
Q ss_pred CChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 211 TNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
|.....+.+- .++..|..+||.|+-
T Consensus 84 p~~~s~~~~~-------~~~~~g~~vIDlSa~ 108 (337)
T 3dr3_A 84 AHEVSHDLAP-------QFLEAGCVVFDLSGA 108 (337)
T ss_dssp CHHHHHHHHH-------HHHHTTCEEEECSST
T ss_pred ChHHHHHHHH-------HHHHCCCEEEEcCCc
Confidence 9866433321 234578999999986
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0028 Score=70.31 Aligned_cols=105 Identities=11% Similarity=0.070 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----cCCchhhhcc--ccccccCCCCc-------chHHHHHHh
Q 001973 2 VNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNA----AGNSWIFKNY--IPNLLRGDAKL-------HFLNAFIQN 68 (988)
Q Consensus 2 ~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~----~~~s~~~~~~--~~~~~~~~~~~-------f~l~l~~KD 68 (988)
.+|.+.+....++.|++.++++.|+|++.+.++...+ +..|+..+++ .+.+.++ +++ +......||
T Consensus 207 ~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l~~~~~~~~t~~s~~~~n~~~~~~~~~g-~~~~~~~~~~g~~~e~~~~ 285 (335)
T 1z82_A 207 WDNAKAALETRGIYEIARFGMFFGADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIARG-FNPLKLLESSNQVVEGAFT 285 (335)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHHT-CCHHHHHHTCSSCCTHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHhCCChhhhcccccccceeeeccCccCcHHHHHHHHhCC-CCHHHHHHhcCCeeeHHHH
Confidence 4788889999999999999999999999887642100 0112222222 2333332 221 112246799
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHH
Q 001973 69 LGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWE 114 (988)
Q Consensus 69 l~la~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~ 114 (988)
++++.++|++.|+++|+.+.+.+.|. .+.+...+++.+.
T Consensus 286 ~~~v~~~a~~~gv~~P~~~~v~~~~~-------~~~~~~~~~~~l~ 324 (335)
T 1z82_A 286 VKAVMKIAKENKIDMPISEEVYRVVY-------EGKPPLQSMRDLM 324 (335)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHH-------SCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHh-------CCCCHHHHHHHHH
Confidence 99999999999999999999998885 3456666666543
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0097 Score=65.08 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=50.1
Q ss_pred CeEEEEc-cchHHHHHHHHHHhC-C--CeEEEEeCCh---hHHHHHHhcCC--ccc----CCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRS-N--FTVIGYDVYR---PTLTKFQNVGG--LIA----NSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~-G--~~V~v~dr~~---~~~~~l~~~G~--~~~----~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+||| +|.+|.+++..|... + .++.++|+++ ..+.++..... .+. ++..+++++||+||++.+.+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~ 80 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA 80 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence 5999999 899999999999875 5 5899999986 22334444321 121 35677899999999998654
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0026 Score=70.86 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=57.5
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCC-----C-eEEEEeC--ChhH-HHH----HHh-cCCcccCCHHHHhccCcEEEEEc
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSN-----F-TVIGYDV--YRPT-LTK----FQN-VGGLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G-----~-~V~v~dr--~~~~-~~~----l~~-~G~~~~~s~~e~~~~aDvV~l~v 210 (988)
|+||+|+| .|++|..+.+.|.+++ + +++.+.+ +..+ ... +.. ....+.+...+...++|+||+|+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~al 88 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDAVFLAL 88 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhcCCCEEEECC
Confidence 46999999 9999999999999987 3 6666642 2222 211 111 11222211134456899999999
Q ss_pred CChHHHHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 211 TNEAQAESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
|.....+ +. +.+..|..+||.|+..
T Consensus 89 g~~~s~~-~~-------~~~~~G~~vIDlSa~~ 113 (352)
T 2nqt_A 89 PHGHSAV-LA-------QQLSPETLIIDCGADF 113 (352)
T ss_dssp TTSCCHH-HH-------HHSCTTSEEEECSSTT
T ss_pred CCcchHH-HH-------HHHhCCCEEEEECCCc
Confidence 9865332 22 2225689999999764
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.018 Score=62.98 Aligned_cols=99 Identities=5% Similarity=-0.057 Sum_probs=68.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCC---hhHHHHHHhc-----CCc--c--cCC---HHHHhccCcEEEEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVY---RPTLTKFQNV-----GGL--I--ANS---PAEAAKDVGVLVIM 209 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~---~~~~~~l~~~-----G~~--~--~~s---~~e~~~~aDvV~l~ 209 (988)
.+++.|+|.|-+|.+++..|++.|. +|++++|+ .++++++.+. +.. . .++ +.+.+.++|+||-|
T Consensus 154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINa 233 (315)
T 3tnl_A 154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNA 233 (315)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEEC
T ss_pred CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEEC
Confidence 4689999999999999999999998 89999999 8888776542 221 1 122 44567799999999
Q ss_pred cCChHHHH-HHHccccchhhhCCCCCEEEecCCCCHHH
Q 001973 210 VTNEAQAE-SVLYGDLGAVSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 210 vp~~~~~~-~vl~~~~~i~~~l~~g~ivId~st~~p~~ 246 (988)
+|-.-.-. ... +-.....++++.+|+|..-.+..|
T Consensus 234 Tp~Gm~~~~~~~--p~~~~~~l~~~~~V~DlvY~P~~T 269 (315)
T 3tnl_A 234 TGVGMKPFEGET--LLPSADMLRPELIVSDVVYKPTKT 269 (315)
T ss_dssp SSTTSTTSTTCC--SCCCGGGCCTTCEEEESCCSSSSC
T ss_pred ccCCCCCCCCCC--CCCcHHHcCCCCEEEEeccCCCCC
Confidence 98542100 000 000133467889999998764433
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0048 Score=65.64 Aligned_cols=75 Identities=21% Similarity=0.193 Sum_probs=61.1
Q ss_pred CCCeEEEEccchH-HHHHHHHHHhC--CCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 145 SVTRVGFIGLGAM-GFGMATHLLRS--NFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 145 ~~~kIgiIG~G~m-G~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
..+++.|||.|.+ |.++|..|... |.+|++.+++. .++.+.++++|+||.+++.+.- +.
T Consensus 157 ~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~----I~ 218 (281)
T 2c2x_A 157 AGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAHL----LT 218 (281)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTTC----BC
T ss_pred CCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCcc----cC
Confidence 3469999999985 99999999999 88999997653 5788889999999999998762 21
Q ss_pred cccchhhhCCCCCEEEecCCC
Q 001973 222 GDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 219 -----~~~vk~GavVIDVgi~ 234 (281)
T 2c2x_A 219 -----ADMVRPGAAVIDVGVS 234 (281)
T ss_dssp -----GGGSCTTCEEEECCEE
T ss_pred -----HHHcCCCcEEEEccCC
Confidence 2346789999998764
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0045 Score=69.19 Aligned_cols=89 Identities=13% Similarity=0.209 Sum_probs=56.7
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCC-CeEEEEeCChh----HHHHHHh-----------cCCccc-CCHHHHhc-cCcEEE
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSN-FTVIGYDVYRP----TLTKFQN-----------VGGLIA-NSPAEAAK-DVGVLV 207 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G-~~V~v~dr~~~----~~~~l~~-----------~G~~~~-~s~~e~~~-~aDvV~ 207 (988)
+||+|+| .|++|..+.+.|.++. ++|....+++. ....... ....+. .++++..+ ++|+||
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~ 88 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF 88 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence 6999999 8999999999998875 57776653321 1221100 111121 24555546 899999
Q ss_pred EEcCChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 208 l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
+|+|.....+.+ ..++..|..|||.|+.
T Consensus 89 ~atp~~~~~~~a-------~~~~~aG~~VId~s~~ 116 (354)
T 1ys4_A 89 SALPSDLAKKFE-------PEFAKEGKLIFSNASA 116 (354)
T ss_dssp ECCCHHHHHHHH-------HHHHHTTCEEEECCST
T ss_pred ECCCchHHHHHH-------HHHHHCCCEEEECCch
Confidence 999986543322 1223467889998875
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0066 Score=64.77 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=61.5
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
...++.|||.|. +|.++|..|...|.+|++.+++ +.++++.++++|+||.+++.+.. +.
T Consensus 160 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~-- 219 (285)
T 3l07_A 160 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNF----IT-- 219 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----BC--
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC--------------chhHHHhcccCCEEEECCCCCCC----CC--
Confidence 346999999987 7999999999999999999864 35778889999999999997652 21
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 220 ---~~~vk~GavVIDvgi~ 235 (285)
T 3l07_A 220 ---ADMVKEGAVVIDVGIN 235 (285)
T ss_dssp ---GGGSCTTCEEEECCCE
T ss_pred ---HHHcCCCcEEEEeccc
Confidence 2356889999998764
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0048 Score=65.85 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=61.7
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
...++.|||.|. +|.++|..|...|.+|++.+++ +.++.+.++++|+||.+++.+. ++.
T Consensus 158 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~----lI~-- 217 (288)
T 1b0a_A 158 FGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF--------------TKNLRHHVENADLLIVAVGKPG----FIP-- 217 (288)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS--------------CSCHHHHHHHCSEEEECSCCTT----CBC--
T ss_pred CCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC--------------chhHHHHhccCCEEEECCCCcC----cCC--
Confidence 357999999997 6999999999999999999854 3577888999999999999876 221
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
...+++|.+|||.+..
T Consensus 218 ---~~~vk~GavVIDVgi~ 233 (288)
T 1b0a_A 218 ---GDWIKEGAIVIDVGIN 233 (288)
T ss_dssp ---TTTSCTTCEEEECCCE
T ss_pred ---HHHcCCCcEEEEccCC
Confidence 2346889999998764
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0016 Score=73.28 Aligned_cols=93 Identities=13% Similarity=0.096 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----cCCchhhhcc--ccccccCC-CCc-----chHHHHHHhH
Q 001973 2 VNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNA----AGNSWIFKNY--IPNLLRGD-AKL-----HFLNAFIQNL 69 (988)
Q Consensus 2 ~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~----~~~s~~~~~~--~~~~~~~~-~~~-----f~l~l~~KDl 69 (988)
.+|.+.+....++.|++.++++.|+|++.+.++...+ +..|++.+++ ++.+..+. +.. +....+.||+
T Consensus 226 ~~n~~~~~~~~~~~E~~~la~a~Gi~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~ 305 (366)
T 1evy_A 226 GLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATA 305 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCCTTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHTTCCHHHHHC---CCCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCCCccccccccchhheeeecCCCCchHHHHHHHhCCCCHHHHHHHcCCeeehHHHH
Confidence 4788889999999999999999999998776531111 0113322322 23333321 110 1233578999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHH
Q 001973 70 GIALDMAKTLAFPLPLLAVAHQQLI 94 (988)
Q Consensus 70 ~la~~~a~~~g~~~p~~~~~~~~~~ 94 (988)
+++.++|++.|+++|+.+.+.+.|.
T Consensus 306 ~~v~~~a~~~gv~~P~~~~v~~~~~ 330 (366)
T 1evy_A 306 DPLMRLAKQLKVKMPLCHQIYEIVY 330 (366)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999999998887
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0093 Score=65.91 Aligned_cols=105 Identities=14% Similarity=0.230 Sum_probs=64.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC------C--CeE-EEEeCChhHHHH------H----HhcCCc-ccC---CHHHHh-
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS------N--FTV-IGYDVYRPTLTK------F----QNVGGL-IAN---SPAEAA- 200 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~------G--~~V-~v~dr~~~~~~~------l----~~~G~~-~~~---s~~e~~- 200 (988)
+++||||||+|.||..++..|.+. | .+| .++|+++++.+. + ...++. +++ |+++++
T Consensus 5 ~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~ 84 (331)
T 3c8m_A 5 KTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALA 84 (331)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHH
T ss_pred cEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhC
Confidence 347999999999999999999775 2 454 567888765332 1 112332 444 888877
Q ss_pred ccCcEEEEEcCCh---HHHHHHHccccchhhhCCCCCEEEecCCCCH--HHHHHHHHHHHh
Q 001973 201 KDVGVLVIMVTNE---AQAESVLYGDLGAVSALSSGASIILSSTVSP--GFVSQLERRLQF 256 (988)
Q Consensus 201 ~~aDvV~l~vp~~---~~~~~vl~~~~~i~~~l~~g~ivId~st~~p--~~~~~l~~~l~~ 256 (988)
.+.|+|+.|+|+. ....+.+ ...+..|+-||.++. .| ....++.+...+
T Consensus 85 ~~iDvVv~~t~~~~~~~~~~~~~------~~AL~aGkhVvtanK-~pla~~~~eL~~~A~~ 138 (331)
T 3c8m_A 85 RDFDIVVDATPASADGKKELAFY------KETFENGKDVVTANK-SGLANFWPEIMEYARS 138 (331)
T ss_dssp SSCSEEEECSCCCSSSHHHHHHH------HHHHHTTCEEEECCC-HHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCccchHHHHH------HHHHHCCCeEEecCc-hhhHHHHHHHHHHHHH
Confidence 3579999999984 2222222 234556776665432 23 334455555444
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0017 Score=66.98 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=45.7
Q ss_pred CeEEEEccchHHHHHHHH--HHhCCCeEE-EEeCChhHHHHHHh-cCCcccCCHHHHhccCcEEEEEcCChH
Q 001973 147 TRVGFIGLGAMGFGMATH--LLRSNFTVI-GYDVYRPTLTKFQN-VGGLIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~--L~~~G~~V~-v~dr~~~~~~~l~~-~G~~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
++|+|||+|++|..+++. +...|+++. ++|.++++...... .++...+++.+.+++.|++++|+|+..
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~~ 157 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVA 157 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCchh
Confidence 589999999999999994 445677755 56999987654221 122235677777766699999998754
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0074 Score=62.29 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=46.8
Q ss_pred eEEEEc-cchHHHHHHHHHH-hCCCeEEEEeCChh-HHHHHHhcC--Ccc-------cCCHHHHhccCcEEEEEcCC
Q 001973 148 RVGFIG-LGAMGFGMATHLL-RSNFTVIGYDVYRP-TLTKFQNVG--GLI-------ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 148 kIgiIG-~G~mG~~lA~~L~-~~G~~V~v~dr~~~-~~~~l~~~G--~~~-------~~s~~e~~~~aDvV~l~vp~ 212 (988)
+|.|.| .|.+|..+++.|+ +.|++|++.+|+++ +.+.+...+ +.. .+++.++++++|+||.+...
T Consensus 7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~ 83 (221)
T 3r6d_A 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME 83 (221)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence 599999 6999999999999 89999999999998 776664222 111 11233455666776666654
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.013 Score=65.14 Aligned_cols=94 Identities=14% Similarity=0.199 Sum_probs=68.7
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCC----hhHH--------HHHHhc-C-CcccCCHHHHhccCcEEEEE
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVY----RPTL--------TKFQNV-G-GLIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~----~~~~--------~~l~~~-G-~~~~~s~~e~~~~aDvV~l~ 209 (988)
...||.|+|.|.+|..+|+.|...|. +|+++||+ .++. +.+.+. + .....++.|+++++|++|-+
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~ 270 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGV 270 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEEC
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEe
Confidence 45799999999999999999999998 89999998 5542 233332 1 12256799999999998887
Q ss_pred cCChHHHHHHHccccchhhhCCCCCEEEecCCCCHH
Q 001973 210 VTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPG 245 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~ 245 (988)
.......+ ++.+.+.++.+|+++|+-.|+
T Consensus 271 Sap~l~t~-------emVk~Ma~~pIIfalSNPt~E 299 (388)
T 1vl6_A 271 SRGNILKP-------EWIKKMSRKPVIFALANPVPE 299 (388)
T ss_dssp SCSSCSCH-------HHHTTSCSSCEEEECCSSSCS
T ss_pred CCCCccCH-------HHHHhcCCCCEEEEcCCCCCC
Confidence 65222223 334446678899999986553
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0028 Score=70.78 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=56.9
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCC-eEEEE-eCCh--hHHHHHH-----------hcCCcccCCHHHHhccCcEEEE
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNF-TVIGY-DVYR--PTLTKFQ-----------NVGGLIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~-dr~~--~~~~~l~-----------~~G~~~~~s~~e~~~~aDvV~l 208 (988)
+++|||||| .|+.|..+.+.|.++-+ ++... .++. .++...- .....+.+...+.++++|+||+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDvvf~ 85 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFS 85 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCEEEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCEEEE
Confidence 457999999 79999999998887653 55544 3332 2222210 0122222211233578999999
Q ss_pred EcCChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 209 MVTNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 209 ~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
|+|.....+.+- .++..|..+||.|+-
T Consensus 86 a~p~~~s~~~a~-------~~~~~G~~vIDlSa~ 112 (359)
T 4dpl_A 86 PLPQGAAGPVEE-------QFAKEGFPVISNSPD 112 (359)
T ss_dssp CCCTTTHHHHHH-------HHHHTTCEEEECSST
T ss_pred CCChHHHHHHHH-------HHHHCCCEEEEcCCC
Confidence 999876443321 234568999999985
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0028 Score=70.78 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=56.9
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCC-eEEEE-eCCh--hHHHHHH-----------hcCCcccCCHHHHhccCcEEEE
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNF-TVIGY-DVYR--PTLTKFQ-----------NVGGLIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~-dr~~--~~~~~l~-----------~~G~~~~~s~~e~~~~aDvV~l 208 (988)
+++|||||| .|+.|..+.+.|.++-+ ++... .++. .++...- .....+.+...+.++++|+||+
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDvvf~ 85 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDIIFS 85 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCEEEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCEEEE
Confidence 457999999 79999999998887653 55544 3332 2222210 0122222211233578999999
Q ss_pred EcCChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 209 MVTNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 209 ~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
|+|.....+.+- .++..|..+||.|+-
T Consensus 86 a~p~~~s~~~a~-------~~~~~G~~vIDlSa~ 112 (359)
T 4dpk_A 86 PLPQGAAGPVEE-------QFAKEGFPVISNSPD 112 (359)
T ss_dssp CCCTTTHHHHHH-------HHHHTTCEEEECSST
T ss_pred CCChHHHHHHHH-------HHHHCCCEEEEcCCC
Confidence 999876443321 234568999999985
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0053 Score=67.53 Aligned_cols=120 Identities=16% Similarity=0.100 Sum_probs=67.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhC-----C--Ce-EEEEeCChhH---------H-HHHHhcC-Ccc-cCCHHHHhc--cC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS-----N--FT-VIGYDVYRPT---------L-TKFQNVG-GLI-ANSPAEAAK--DV 203 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~-----G--~~-V~v~dr~~~~---------~-~~l~~~G-~~~-~~s~~e~~~--~a 203 (988)
+.||+|||+|.||+.+++.|.++ | .+ |-++|++++. . +...+.| ... .-+..+.+. +.
T Consensus 4 ~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~i 83 (325)
T 3ing_A 4 EIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAA 83 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCC
T ss_pred eEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCC
Confidence 46999999999999999999874 3 34 4445777542 1 1222234 210 115666664 58
Q ss_pred cEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCH-HHHHHHHHHHHhcCCCceE-ecCcccC
Q 001973 204 GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSP-GFVSQLERRLQFEGKDLKL-VDAPVSG 270 (988)
Q Consensus 204 DvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p-~~~~~l~~~l~~~~~g~~~-ldapv~g 270 (988)
|+|+.|+|+....+... +.+...+..|+-||.++...- ....++.+...+ .+..+ .++.+.+
T Consensus 84 DvVVe~T~~~~~~~pa~---~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~--~g~~~~~Ea~vg~ 147 (325)
T 3ing_A 84 DLLVDCTPASRDGVREY---SLYRMAFESGMNVVTANKSGLANKWHDIMDSANQ--NSKYIRYEATVAG 147 (325)
T ss_dssp SEEEECCCCCSSSHHHH---HHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHH--HTCCEECGGGSST
T ss_pred CEEEECCCCccccchHH---HHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHH--cCCeEEEEeeecc
Confidence 99999998752211111 122344567877776655221 344455555544 34443 3444433
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0067 Score=64.70 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=61.7
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||.|. +|.++|..|...|.+|++.+++ +.++++.++++|+||.+++.+.. +.
T Consensus 159 ~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~-- 218 (285)
T 3p2o_A 159 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK--------------TKDLSLYTRQADLIIVAAGCVNL----LR-- 218 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHTTCSEEEECSSCTTC----BC--
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC--------------chhHHHHhhcCCEEEECCCCCCc----CC--
Confidence 347999999987 6999999999999999999864 35778889999999999997652 21
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 219 ---~~~vk~GavVIDVgi~ 234 (285)
T 3p2o_A 219 ---SDMVKEGVIVVDVGIN 234 (285)
T ss_dssp ---GGGSCTTEEEEECCCE
T ss_pred ---HHHcCCCeEEEEeccC
Confidence 2456899999998764
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.014 Score=64.81 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=67.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhc-cCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAK-DVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~-~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|+|+|.|++|..+|+.|...|.+|+++|+++++.+...+.|+... +..++.. +||+++-|- ++.++. .
T Consensus 175 GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A-----~~~~I~--~ 246 (355)
T 1c1d_A 175 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCA-----MGGVIT--T 246 (355)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECS-----CSCCBC--H
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhH-----HHhhcC--H
Confidence 469999999999999999999999999999999876322333466554 5567666 899988543 222221 1
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.-.+.++ .++|++.++... +..+-.+.+.+
T Consensus 247 ~~~~~lk-~~iVie~AN~p~-t~~eA~~~L~~ 276 (355)
T 1c1d_A 247 EVARTLD-CSVVAGAANNVI-ADEAASDILHA 276 (355)
T ss_dssp HHHHHCC-CSEECCSCTTCB-CSHHHHHHHHH
T ss_pred HHHhhCC-CCEEEECCCCCC-CCHHHHHHHHh
Confidence 1223443 678888876542 22122355655
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0057 Score=63.25 Aligned_cols=66 Identities=15% Similarity=0.173 Sum_probs=48.7
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------cCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~vp~ 212 (988)
||+|.|.| .|.+|..++..|.+.|++|++.+|++++.+.+. .++.. .++..++++++|+||.+...
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 57999999 599999999999999999999999987654321 12111 12344566778888877654
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0022 Score=65.82 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=47.9
Q ss_pred CeEEEEccchHHHHHHHHH--HhCCCeEE-EEeCChh-HHHH-HHhcCCcc--cCCHHHHhc--cCcEEEEEcCChH
Q 001973 147 TRVGFIGLGAMGFGMATHL--LRSNFTVI-GYDVYRP-TLTK-FQNVGGLI--ANSPAEAAK--DVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L--~~~G~~V~-v~dr~~~-~~~~-l~~~G~~~--~~s~~e~~~--~aDvV~l~vp~~~ 214 (988)
.+++|||+|++|..+++.+ .+.|+++. ++|.+++ +... .. .|+++ .+++++.++ +.|++++|+|+..
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i-~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~~ 160 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE-DGIPVYGISTINDHLIDSDIETAILTVPSTE 160 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT-TCCBEEEGGGHHHHC-CCSCCEEEECSCGGG
T ss_pred CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE-CCeEEeCHHHHHHHHHHcCCCEEEEecCchh
Confidence 4899999999999999984 45677755 5699988 6543 11 25543 456667665 4899999998754
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0087 Score=66.11 Aligned_cols=89 Identities=15% Similarity=0.027 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCHHHHH------HHHhhccCCchhhhccccccccCCCCc-chHHH----------H
Q 001973 3 NDLLEGVHLIASVEAISLGVQFGIHPWVLY------DIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNA----------F 65 (988)
Q Consensus 3 nN~l~~~~~~~~aEal~la~~~Gld~~~~~------~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l----------~ 65 (988)
+|.....+..++.|++.++++.|++++.+. +.+..+.. +... .... .....|+. ..+.. .
T Consensus 214 ~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~s~~~d~~~~~~~~~~~~E~ 290 (335)
T 1txg_A 214 SNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG-GRNG-MLGE-LLGKGLSIDEAMEELERRGVGVVEG 290 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC-HHHH-HHHH-HHHTTCCHHHHHHHHHHTTCCCCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCcchhhcccchhheeecccc-CccH-HHHH-HHhCCCCHHHHHHHhccCCceecch
Confidence 788888999999999999999999998775 66665443 2211 0111 11222322 11222 2
Q ss_pred HHhHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 001973 66 IQNLGIALDMAKTLAFPLPLLAVAHQQLI 94 (988)
Q Consensus 66 ~KDl~la~~~a~~~g~~~p~~~~~~~~~~ 94 (988)
.||++++.++|++.|+++|+.+.+.+.+.
T Consensus 291 ~~~~~~~~~~a~~~gv~~P~~~~~~~~~~ 319 (335)
T 1txg_A 291 YKTAEKAYRLSSKINADTKLLDSIYRVLY 319 (335)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHh
Confidence 39999999999999999999999988886
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0061 Score=67.98 Aligned_cols=90 Identities=17% Similarity=0.248 Sum_probs=55.8
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCC-CeEEEEe-CChhHHHHHH--------------hcCCcccC-CHHHHhccCcEE
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSN-FTVIGYD-VYRPTLTKFQ--------------NVGGLIAN-SPAEAAKDVGVL 206 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G-~~V~v~d-r~~~~~~~l~--------------~~G~~~~~-s~~e~~~~aDvV 206 (988)
+++||+|+| .|++|..+.+.|.++. .++.... .+....+.+. .....+.+ ++++ .+++|+|
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvV 81 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVV 81 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEE
Confidence 347999999 8999999999998765 4666664 2222111111 01222222 3333 4789999
Q ss_pred EEEcCChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 207 VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 207 ~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
|+|+|.....+.+ ..++..|..|||.|+.
T Consensus 82 f~atp~~~s~~~a-------~~~~~aG~~VId~s~~ 110 (350)
T 2ep5_A 82 LSALPNELAESIE-------LELVKNGKIVVSNASP 110 (350)
T ss_dssp EECCCHHHHHHHH-------HHHHHTTCEEEECSST
T ss_pred EECCChHHHHHHH-------HHHHHCCCEEEECCcc
Confidence 9999976543322 1234467789998864
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.01 Score=63.27 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=61.5
Q ss_pred CCCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
..+++.|||.|. +|.++|..|...|.+|++.++. +.++++.++++|+||.+++.+.. +.
T Consensus 160 ~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~--------------T~~L~~~~~~ADIVI~Avg~p~~----I~-- 219 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF--------------TRDLADHVSRADLVVVAAGKPGL----VK-- 219 (286)
T ss_dssp TTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHTCSEEEECCCCTTC----BC--
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC--------------CcCHHHHhccCCEEEECCCCCCC----CC--
Confidence 347999999876 8999999999999999999763 34678889999999999997652 21
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
..++++|.+|||.+..
T Consensus 220 ---~~~vk~GavVIDvgi~ 235 (286)
T 4a5o_A 220 ---GEWIKEGAIVIDVGIN 235 (286)
T ss_dssp ---GGGSCTTCEEEECCSC
T ss_pred ---HHHcCCCeEEEEeccc
Confidence 2456899999998875
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.015 Score=63.36 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=73.5
Q ss_pred CCeEEEE-cc-chHHHHHHHHHHhCCCeEEEEeCChhHHH-HHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHHH
Q 001973 146 VTRVGFI-GL-GAMGFGMATHLLRSNFTVIGYDVYRPTLT-KFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 146 ~~kIgiI-G~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~-~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl 220 (988)
..+|+|| |+ |.+|..++++|.+.|++ .+|+.+|.+.. + -.|.++..|+.|+.+ ..|++++++|.... .+++
T Consensus 13 ~~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~vD~avI~vP~~~~-~~~~ 88 (305)
T 2fp4_A 13 KNTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGGKT--HLGLPVFNTVKEAKEQTGATASVIYVPPPFA-AAAI 88 (305)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCHHHH-HHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCcce--ECCeeeechHHHhhhcCCCCEEEEecCHHHH-HHHH
Confidence 4578998 98 99999999999999999 56777776421 1 247788889999988 89999999998764 3343
Q ss_pred ccccchhhhCCCCCEEEecCCCC-HHHHHHHHHHHHhcCC-CceEe
Q 001973 221 YGDLGAVSALSSGASIILSSTVS-PGFVSQLERRLQFEGK-DLKLV 264 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~-p~~~~~l~~~l~~~~~-g~~~l 264 (988)
++.... .- +.++..+... ....+++.+...+ . |+.++
T Consensus 89 ---~e~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~--~~gi~li 127 (305)
T 2fp4_A 89 ---NEAIDA-EV-PLVVCITEGIPQQDMVRVKHRLLR--QGKTRLI 127 (305)
T ss_dssp ---HHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHTT--CSSCEEE
T ss_pred ---HHHHHC-CC-CEEEEECCCCChHHHHHHHHHHHh--cCCcEEE
Confidence 233332 11 3444455444 3444566666654 4 56655
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.014 Score=61.71 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=31.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~ 179 (988)
.+|.|||+|.+|+.++.+|++.|. +++++|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 489999999999999999999996 899999987
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0026 Score=70.22 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=56.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCC---------Ce-EEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN---------FT-VIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G---------~~-V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
+||||||+|.||..++..|.++. .+ +.++|+++++.+.+. ....++|+++++ +.|+|+.|+|+....
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~--~~~~~~d~~~ll-~iDvVve~t~~~~~a 80 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIP--QELLRAEPFDLL-EADLVVEAMGGVEAP 80 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSC--GGGEESSCCCCT-TCSEEEECCCCSHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccC--cccccCCHHHHh-CCCEEEECCCCcHHH
Confidence 69999999999999999998763 44 456788876533220 113466777877 999999999986433
Q ss_pred HHHHccccchhhhCCCCCEEEe
Q 001973 217 ESVLYGDLGAVSALSSGASIIL 238 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId 238 (988)
.+.. ...+..|+-||.
T Consensus 81 ~~~~------~~AL~aGKhVVt 96 (332)
T 2ejw_A 81 LRLV------LPALEAGIPLIT 96 (332)
T ss_dssp HHHH------HHHHHTTCCEEE
T ss_pred HHHH------HHHHHcCCeEEE
Confidence 3332 233445655554
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0053 Score=65.38 Aligned_cols=84 Identities=6% Similarity=-0.127 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCch-hhhccc--c-ccccCCCCc-chHHHHHHhHHHHHHHHHhcCC
Q 001973 7 EGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSW-IFKNYI--P-NLLRGDAKL-HFLNAFIQNLGIALDMAKTLAF 81 (988)
Q Consensus 7 ~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~-~~~~~~--~-~~~~~~~~~-f~l~l~~KDl~la~~~a~~~g~ 81 (988)
++..+.+++|+ +++.|++++.+.+++..+..+++ ++..++ | .+.++.+.| |.+..+.||+ ++.|+
T Consensus 171 ~~~~~~~l~e~---~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~~~~~ 240 (263)
T 1yqg_A 171 VFYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHEAVEAF-------RRHRV 240 (263)
T ss_dssp HHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCTTSHHHHHHHHH-------HHTTH
T ss_pred HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCChhHHHHHHHH-------HHCCH
Confidence 44556666676 88999999999999998887777 666555 5 567788889 9999999997 67999
Q ss_pred CCcHHHHHHHHHHHHhhCc
Q 001973 82 PLPLLAVAHQQLILGLSHA 100 (988)
Q Consensus 82 ~~p~~~~~~~~~~~a~~~G 100 (988)
+.|+.+.+.+.|+++.+.|
T Consensus 241 ~~~~~~a~~~~~~~~~~~~ 259 (263)
T 1yqg_A 241 AEAISEGVCACVRRSQEME 259 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.01 Score=65.75 Aligned_cols=68 Identities=9% Similarity=0.086 Sum_probs=53.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc----cCCH---HHH-hccCcEEEEEcCChHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI----ANSP---AEA-AKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~----~~s~---~e~-~~~aDvV~l~vp~~~~ 215 (988)
.++|.|+|.|.+|..+++.|.+.|+ |++.|+++++++ +.+.|..+ .++. .++ ++++|.++++++++..
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~ 190 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE 190 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHH
Confidence 3589999999999999999999999 999999999999 87776543 1222 223 5678888888887653
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.021 Score=62.99 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=50.0
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCC--e-----EEEEeCCh--hHH----HHHHhcC------CcccCCHHHHhccCcE
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNF--T-----VIGYDVYR--PTL----TKFQNVG------GLIANSPAEAAKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~--~-----V~v~dr~~--~~~----~~l~~~G------~~~~~s~~e~~~~aDv 205 (988)
.+||+|+| +|.+|+.++..|+..|. + +.++|+++ +++ .+|.... ....++..+++++||+
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDv 82 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCE
Confidence 46999999 89999999999998875 5 99999974 222 3344422 2335677888999999
Q ss_pred EEEEcC
Q 001973 206 LVIMVT 211 (988)
Q Consensus 206 V~l~vp 211 (988)
||++-.
T Consensus 83 VvitAg 88 (333)
T 5mdh_A 83 AILVGS 88 (333)
T ss_dssp EEECCS
T ss_pred EEEeCC
Confidence 999864
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.034 Score=61.48 Aligned_cols=67 Identities=15% Similarity=0.319 Sum_probs=50.5
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCChhH--HH----HHHhc------CCcccCCHHHHhccCcE
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVYRPT--LT----KFQNV------GGLIANSPAEAAKDVGV 205 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~----~l~~~------G~~~~~s~~e~~~~aDv 205 (988)
..||+|+|+ |.+|.+++..|+.... ++.+||+++.. ++ +|... .....+++.+++++||+
T Consensus 24 ~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~adv 103 (345)
T 4h7p_A 24 AVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAI 103 (345)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCCE
Confidence 359999996 9999999999987653 79999997642 22 34332 12346788899999999
Q ss_pred EEEEcCC
Q 001973 206 LVIMVTN 212 (988)
Q Consensus 206 V~l~vp~ 212 (988)
|+++-.-
T Consensus 104 Vvi~aG~ 110 (345)
T 4h7p_A 104 AIMCGAF 110 (345)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998643
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0071 Score=61.25 Aligned_cols=36 Identities=14% Similarity=0.293 Sum_probs=33.6
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHH
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTL 182 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~ 182 (988)
|+|.|.|. |.+|..+++.|.+.|++|++.+|++++.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~ 40 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL 40 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhc
Confidence 68999998 9999999999999999999999998764
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0043 Score=68.90 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=53.8
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCC---eEEEE-eCC-hhHHHHHHhcCCcccC-CHHHHhccCcEEEEEcCChHHHHH
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNF---TVIGY-DVY-RPTLTKFQNVGGLIAN-SPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~---~V~v~-dr~-~~~~~~l~~~G~~~~~-s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
+|||+|+| .|++|..+.+.|.+.+| ++... +++ ..+.-.+......+.+ ++ +..+++|+||+|+|.....+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~-~~~~~~DvV~~a~g~~~s~~- 83 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDS-FDFSSVGLAFFAAAAEVSRA- 83 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGG-CCGGGCSEEEECSCHHHHHH-
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCH-HHhcCCCEEEEcCCcHHHHH-
Confidence 36999999 89999999999997665 44544 332 2110001100111111 22 23568999999999765332
Q ss_pred HHccccchhhhCCCCCEEEecCCCC
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
.. ..++..|..+||.|+..
T Consensus 84 ~a------~~~~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 84 HA------ERARAAGCSVIDLSGAL 102 (340)
T ss_dssp HH------HHHHHTTCEEEETTCTT
T ss_pred HH------HHHHHCCCEEEEeCCCC
Confidence 22 12334578899998754
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.023 Score=61.96 Aligned_cols=94 Identities=10% Similarity=0.052 Sum_probs=65.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCC---hhHHHHHHhc-----CCc--c--cCCH---HHHhccCcEEEEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVY---RPTLTKFQNV-----GGL--I--ANSP---AEAAKDVGVLVIM 209 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~---~~~~~~l~~~-----G~~--~--~~s~---~e~~~~aDvV~l~ 209 (988)
.+++.|+|+|-+|.+++..|++.|. +|++++|+ .++++++.+. +.. . ..+. .+.+.++|+||-|
T Consensus 148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINa 227 (312)
T 3t4e_A 148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNG 227 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEEC
Confidence 3589999999999999999999998 89999999 8777776542 221 1 2233 4567789999999
Q ss_pred cCChHHHHHHHccccch---hhhCCCCCEEEecCCCC
Q 001973 210 VTNEAQAESVLYGDLGA---VSALSSGASIILSSTVS 243 (988)
Q Consensus 210 vp~~~~~~~vl~~~~~i---~~~l~~g~ivId~st~~ 243 (988)
+|..-.-.. ...+ ...+.++.+++|+--.+
T Consensus 228 Tp~Gm~~~~----~~~~~~~~~~l~~~~~v~D~vY~P 260 (312)
T 3t4e_A 228 TKVGMKPLE----NESLIGDVSLLRPELLVTECVYNP 260 (312)
T ss_dssp SSTTSTTST----TCCSCCCGGGSCTTCEEEECCCSS
T ss_pred CcCCCCCCC----CCcccCCHHHcCCCCEEEEeccCC
Confidence 886431000 0011 13466788888887654
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0097 Score=64.93 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCH--HHHHHHHhhccCCchhhhccccccccCCC-Cc-chHHHHHHhHHHHHHHHHhcCCCC
Q 001973 8 GVHLIASVEAISLGVQFGIHP--WVLYDIISNAAGNSWIFKNYIPNLLRGDA-KL-HFLNAFIQNLGIALDMAKTLAFPL 83 (988)
Q Consensus 8 ~~~~~~~aEal~la~~~Gld~--~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~-f~l~l~~KDl~la~~~a~~~g~~~ 83 (988)
..+..++.|++.++++.|+++ +.+.+.+..........+++ +.|. .|+ .+ +..+ +.||++++.++|++.|+++
T Consensus 220 ~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~sm~-~d~~~~g~~~E-~~~~~~~~~~~a~~~gv~~ 296 (316)
T 2ew2_A 220 SLVKTLISEFAAVAEKEAIYLDQAEVYTHIVQTYDPNGIGLHY-PSMY-QDLIKNHRLTE-IDYINGAVWRKGQKYNVAT 296 (316)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCTTTTTTSC-CHHH-HHHTTTCCCCS-GGGTHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccccCCCCC-cHHH-HHHHHcCCcch-HHHHhhHHHHHHHHhCCCC
Confidence 567789999999999999997 57888887633221112222 2222 344 44 4556 7899999999999999999
Q ss_pred cHHHHHHHHHHHHhh
Q 001973 84 PLLAVAHQQLILGLS 98 (988)
Q Consensus 84 p~~~~~~~~~~~a~~ 98 (988)
|+.+.+.+.+..+..
T Consensus 297 P~~~~~~~~~~~~~~ 311 (316)
T 2ew2_A 297 PFCAMLTQLVHGKEE 311 (316)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.016 Score=64.18 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=48.7
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh----hHHH---HHHhcCCcc-------cCCHHHHhc--cCcEEEE
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYR----PTLT---KFQNVGGLI-------ANSPAEAAK--DVGVLVI 208 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~----~~~~---~l~~~G~~~-------~~s~~e~~~--~aDvV~l 208 (988)
+|+|.|.|. |.+|..++..|.+.||+|++.+|++ ++.+ .+...++.+ .+++.++++ ++|+||.
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~ 89 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS 89 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence 468999998 9999999999999999999999976 4444 233344432 123445566 7888887
Q ss_pred EcCC
Q 001973 209 MVTN 212 (988)
Q Consensus 209 ~vp~ 212 (988)
+...
T Consensus 90 ~a~~ 93 (346)
T 3i6i_A 90 TVGG 93 (346)
T ss_dssp CCCG
T ss_pred CCch
Confidence 7654
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.056 Score=55.89 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=73.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh-HHHHHHhcC-CcccC--CHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP-TLTKFQNVG-GLIAN--SPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~G-~~~~~--s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
+.++|-|||.|.+|..-+..|.+.|.+|++++.+.. .++.+.+.| +.... -..+.+.++|+||.++.++..-..+.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~~N~~I~ 109 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQAVNKFVK 109 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHHHHHHHH
Confidence 457999999999999999999999999999987653 355565543 33211 11234678999999988876434333
Q ss_pred ccc-cch--------------hh-hCCCCCEEEecCC--CCHHHHHHHHHHHHh
Q 001973 221 YGD-LGA--------------VS-ALSSGASIILSST--VSPGFVSQLERRLQF 256 (988)
Q Consensus 221 ~~~-~~i--------------~~-~l~~g~ivId~st--~~p~~~~~l~~~l~~ 256 (988)
... .++ .+ ....|.+.|-.|| .+|..++.+.+.+.+
T Consensus 110 ~~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie~ 163 (223)
T 3dfz_A 110 QHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLSS 163 (223)
T ss_dssp HHSCTTCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 100 010 00 1123455555554 578888888888765
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0034 Score=69.54 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=54.7
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCC---CeEEEEe-C-ChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSN---FTVIGYD-V-YRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G---~~V~v~d-r-~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
++||+|+| .|++|..+.+.|.+++ +++..+. + +..+.-.+......+.+...+..+++|+||+|+|.....+.+
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~s~~~a 82 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSAKWA 82 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHHHHHHH
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchHHHHHH
Confidence 46999999 9999999999999874 4566554 2 221100011111112111112346899999999976543322
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
..++..|..+||.|+-
T Consensus 83 -------~~~~~~G~~vId~s~~ 98 (336)
T 2r00_A 83 -------PIAAEAGVVVIDNTSH 98 (336)
T ss_dssp -------HHHHHTTCEEEECSST
T ss_pred -------HHHHHcCCEEEEcCCc
Confidence 2234568899999875
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.017 Score=53.85 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=69.2
Q ss_pred CCeEEEEcc----chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIGL----GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
..+|+|||+ +.+|..+.++|.+.||+|+..|...+.+ .|.+...|+.++-. .|++++++|... +.+++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p~~~-v~~~v- 75 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYINPQN-QLSEY- 75 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSCHHH-HGGGH-
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeCHHH-HHHHH-
Confidence 458999998 5699999999999999998888764433 36777788888777 999999999754 44444
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
++..+.- ...+|+..... .+++.+...+ .|++++
T Consensus 76 --~e~~~~g-~k~v~~~~G~~----~~e~~~~a~~--~Girvv 109 (122)
T 3ff4_A 76 --NYILSLK-PKRVIFNPGTE----NEELEEILSE--NGIEPV 109 (122)
T ss_dssp --HHHHHHC-CSEEEECTTCC----CHHHHHHHHH--TTCEEE
T ss_pred --HHHHhcC-CCEEEECCCCC----hHHHHHHHHH--cCCeEE
Confidence 3333322 22444433222 2355555555 567766
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.025 Score=62.41 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=59.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhC-CCeEEE-EeC--ChhHHHHHHhc----C----C---------------cc--cCCH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS-NFTVIG-YDV--YRPTLTKFQNV----G----G---------------LI--ANSP 196 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~-G~~V~v-~dr--~~~~~~~l~~~----G----~---------------~~--~~s~ 196 (988)
++||||+|+|++|..+++.|.++ +.+|.. .|+ +++....+.+. | . .+ ..++
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~ 82 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 82 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence 36999999999999999999875 467554 464 67776665541 1 0 00 1255
Q ss_pred HHHh---ccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 197 AEAA---KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 197 ~e~~---~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
++.- .++|+||.|+|.....+.+ ..++..|..+|++|.-
T Consensus 83 ~~l~~~~~~vDvV~eatg~~~~~e~a-------~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 83 SKIKWGDAGAEYVVESTGVFTTMEKA-------GAHLQGGAKRVIISAP 124 (335)
T ss_dssp GGCCTTTTTCCEEEECSSSCCSHHHH-------GGGGGGTCSEEEESSC
T ss_pred HHCccccCCCCEEEECCCchhhHHHH-------HHHHhCCCeEEEeccC
Confidence 5541 4789999999986644332 3455667667777764
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.053 Score=60.00 Aligned_cols=88 Identities=16% Similarity=0.201 Sum_probs=57.4
Q ss_pred CeEEEEccchHHHHHHHHHHhC-CCeEEE-EeCChhHHHH---------------------HHhcCCcccCCHHHHhccC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS-NFTVIG-YDVYRPTLTK---------------------FQNVGGLIANSPAEAAKDV 203 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~-G~~V~v-~dr~~~~~~~---------------------l~~~G~~~~~s~~e~~~~a 203 (988)
+||||+|+|.+|..+++.|.++ +++|.. .|++++.... +...+..+..++.+...++
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v 82 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA 82 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence 5999999999999999999876 467554 4555444332 2222333444555556789
Q ss_pred cEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecC
Q 001973 204 GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSS 240 (988)
Q Consensus 204 DvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~s 240 (988)
|+||.|+|.....+.. . ..++..|+.||+.+
T Consensus 83 DiV~eatg~~~s~~~a----~--~~~l~aG~~VI~sa 113 (343)
T 2yyy_A 83 DIVVDGAPKKIGKQNL----E--NIYKPHKVKAILQG 113 (343)
T ss_dssp SEEEECCCTTHHHHHH----H--HTTTTTTCEEEECT
T ss_pred CEEEECCCccccHHHH----H--HHHHHCCCEEEECC
Confidence 9999999875533322 1 24566787777633
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.016 Score=63.93 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=48.7
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCCh--hHH----HHHHhcC------CcccCCHHHHhccCc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVYR--PTL----TKFQNVG------GLIANSPAEAAKDVG 204 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~----~~l~~~G------~~~~~s~~e~~~~aD 204 (988)
+.|||.|+|. |.+|+.++..|...|+ +|+++|+++ ++. ..+.... +...++..++++++|
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D 82 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD 82 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCC
Confidence 3469999997 9999999999999996 899999875 222 2233221 112356677888899
Q ss_pred EEEEEcC
Q 001973 205 VLVIMVT 211 (988)
Q Consensus 205 vV~l~vp 211 (988)
+||.+..
T Consensus 83 ~Vih~Ag 89 (327)
T 1y7t_A 83 YALLVGA 89 (327)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9988754
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.013 Score=63.17 Aligned_cols=81 Identities=12% Similarity=-0.004 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCH--HHH----HHHHhhc-cCCchhhhccccccccCCCCcchHHHHHHhHHHHHHHHHhcC
Q 001973 8 GVHLIASVEAISLGVQFGIHP--WVL----YDIISNA-AGNSWIFKNYIPNLLRGDAKLHFLNAFIQNLGIALDMAKTLA 80 (988)
Q Consensus 8 ~~~~~~~aEal~la~~~Gld~--~~~----~~~l~~~-~~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl~la~~~a~~~g 80 (988)
.....++.|++.++++.|+++ +.+ .+++..+ ...|.|++.. ..+. .+++. ++.+++.++|++.|
T Consensus 202 ~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~~ssm~~d~----~~g~----~~e~~-~~~g~~~~~a~~~g 272 (291)
T 1ks9_A 202 QEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDI----RALR----HTEID-YINGFLLRRARAHG 272 (291)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTTCCCHHHHHH----HTTC----CCSGG-GTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHH----HcCC----ccHHH-HHHHHHHHHHHHhC
Confidence 678899999999999999987 555 4455443 3444444321 1222 11222 57889999999999
Q ss_pred CCCcHHHHHHHHHHHHh
Q 001973 81 FPLPLLAVAHQQLILGL 97 (988)
Q Consensus 81 ~~~p~~~~~~~~~~~a~ 97 (988)
+|+|+.+.+.+.|+...
T Consensus 273 v~~P~~~~~~~~~~~~e 289 (291)
T 1ks9_A 273 IAVPENTRLFEMVKRKE 289 (291)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988653
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.021 Score=61.84 Aligned_cols=67 Identities=25% Similarity=0.254 Sum_probs=48.1
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh------hHHHH---HHhcCCccc-------CCHHHHhccCcEEEE
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYR------PTLTK---FQNVGGLIA-------NSPAEAAKDVGVLVI 208 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~------~~~~~---l~~~G~~~~-------~s~~e~~~~aDvV~l 208 (988)
+++|.|.|. |.+|..++..|++.||+|++.+|++ ++.+. +...|+... +++.++++++|+||.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 468999996 9999999999999999999999973 34332 233454321 134456667888887
Q ss_pred EcCC
Q 001973 209 MVTN 212 (988)
Q Consensus 209 ~vp~ 212 (988)
+.+.
T Consensus 84 ~a~~ 87 (308)
T 1qyc_A 84 TVGS 87 (308)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 7653
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.019 Score=62.66 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=46.8
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChh-HHH---HHHhcCCcc-------cCCHHHHhccCcEEEEEcC
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRP-TLT---KFQNVGGLI-------ANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~-~~~---~l~~~G~~~-------~~s~~e~~~~aDvV~l~vp 211 (988)
++|.|.|. |.+|..++..|.+.|++|++.+|+++ +.+ .+...|+.+ .+++.++++++|+||.+.+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA 88 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 48999995 99999999999999999999999874 333 233445432 1134455667777777665
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.027 Score=61.19 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=46.7
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCC-----hhHHHHH---HhcCCccc-------CCHHHHhccCcEEEEE
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVY-----RPTLTKF---QNVGGLIA-------NSPAEAAKDVGVLVIM 209 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~-----~~~~~~l---~~~G~~~~-------~s~~e~~~~aDvV~l~ 209 (988)
+|+|.|.| .|.+|..++..|.+.|++|++.+|+ +++.+.+ ...|+... +++.++++++|+||.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 83 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 83 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence 46899999 4999999999999999999999998 4454433 23344321 1234556667777766
Q ss_pred cC
Q 001973 210 VT 211 (988)
Q Consensus 210 vp 211 (988)
..
T Consensus 84 a~ 85 (313)
T 1qyd_A 84 LA 85 (313)
T ss_dssp CC
T ss_pred Cc
Confidence 54
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.016 Score=65.04 Aligned_cols=90 Identities=12% Similarity=0.177 Sum_probs=55.2
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCC-CeEE-EEe-C-Chh-HHHHHH-----------hcCCcccC-CHHHHhccCcEEE
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSN-FTVI-GYD-V-YRP-TLTKFQ-----------NVGGLIAN-SPAEAAKDVGVLV 207 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G-~~V~-v~d-r-~~~-~~~~l~-----------~~G~~~~~-s~~e~~~~aDvV~ 207 (988)
++|||||| .|+.|..|.+.|.++. .++. ++. + +.. ++.+.. .....+.+ +..+.++++|+||
T Consensus 19 ~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~Dvvf 98 (381)
T 3hsk_A 19 VKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDVVF 98 (381)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGCSEEE
T ss_pred ccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcccCCEEE
Confidence 46999999 7999999999998876 3564 332 2 221 122110 01122211 1221457899999
Q ss_pred EEcCChHHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 208 l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
+|+|.....+.+- ..+..|..|||.|+-
T Consensus 99 ~alp~~~s~~~~~-------~~~~~G~~VIDlSa~ 126 (381)
T 3hsk_A 99 SGLDADVAGDIEK-------SFVEAGLAVVSNAKN 126 (381)
T ss_dssp ECCCHHHHHHHHH-------HHHHTTCEEEECCST
T ss_pred ECCChhHHHHHHH-------HHHhCCCEEEEcCCc
Confidence 9999866433321 223468999999985
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.029 Score=60.69 Aligned_cols=66 Identities=20% Similarity=0.104 Sum_probs=50.6
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCC-CeEEEEeCChhHH--HHHHhcCCcc----c---CCHHHHhccCcEEEEEcC
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSN-FTVIGYDVYRPTL--TKFQNVGGLI----A---NSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G-~~V~v~dr~~~~~--~~l~~~G~~~----~---~s~~e~~~~aDvV~l~vp 211 (988)
+|+|.|.|. |.+|..++..|.+.| ++|++.+|++++. +.+...|+.. . +++.++++++|+||.+..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 468999997 999999999999998 9999999997764 3444455432 1 234456778899888765
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0057 Score=68.20 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=53.8
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCe---EEEEe-C-ChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFT---VIGYD-V-YRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~---V~v~d-r-~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
+||+||| .|+.|..|.+.|.+++|+ +.... + +..+.-.+......+.+-..+..+++|+||+|+|.....+.+
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~a- 81 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYA- 81 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHH-
T ss_pred cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECCChHhHHHHH-
Confidence 5999999 899999999999998773 34333 1 111100010001111111123357899999999976543322
Q ss_pred ccccchhhhCCCCCEEEecCCC
Q 001973 221 YGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~ 242 (988)
..++..|..+||.|+-
T Consensus 82 ------~~~~~~G~~vIDlSa~ 97 (366)
T 3pwk_A 82 ------PYAVKAGVVVVDNTSY 97 (366)
T ss_dssp ------HHHHHTTCEEEECSST
T ss_pred ------HHHHHCCCEEEEcCCc
Confidence 1234568899999975
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.019 Score=61.75 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=45.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------cCCHHHHhcc-CcEEEEEcC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------ANSPAEAAKD-VGVLVIMVT 211 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------~~s~~e~~~~-aDvV~l~vp 211 (988)
+|+|.|.|+|.+|+.++..|.+.|++|++.+|+++... .++.. .+++.++++. +|+||-+..
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMP----AGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCC----TTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccc----cCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 46999999999999999999999999999999876521 22221 1223344555 888887753
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.058 Score=60.13 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=48.1
Q ss_pred CCCCeEEEEc-cchHHHHHHHHHHhCCC--e---EEEEeCChhH----H----HHHHhcC------CcccCCHHHHhccC
Q 001973 144 NSVTRVGFIG-LGAMGFGMATHLLRSNF--T---VIGYDVYRPT----L----TKFQNVG------GLIANSPAEAAKDV 203 (988)
Q Consensus 144 ~~~~kIgiIG-~G~mG~~lA~~L~~~G~--~---V~v~dr~~~~----~----~~l~~~G------~~~~~s~~e~~~~a 203 (988)
+..+||+||| .|.+|.+++-.|+..+. + +.++|.+.+. + -+|.... ....++..+++++|
T Consensus 30 ~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~da 109 (375)
T 7mdh_A 30 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDV 109 (375)
T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCC
Confidence 3457999999 79999999999998774 2 7776554332 2 2233221 23456678889999
Q ss_pred cEEEEEcCC
Q 001973 204 GVLVIMVTN 212 (988)
Q Consensus 204 DvV~l~vp~ 212 (988)
|+||++-..
T Consensus 110 DvVVitag~ 118 (375)
T 7mdh_A 110 DWALLIGAK 118 (375)
T ss_dssp SEEEECCCC
T ss_pred CEEEEcCCC
Confidence 999997543
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.025 Score=60.85 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=48.8
Q ss_pred CeEEEEc-cchHHHHHHHHHHhC-CCeEEEEeCChhHHHHHHhcCCcc-------cCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRS-NFTVIGYDVYRPTLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~vp~ 212 (988)
|||.|.| .|.+|..++..|.+. |++|++.+|++++...+...++.+ .+++.++++++|+||.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 5899999 599999999999998 999999999998766554444322 11334556677777776543
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.055 Score=59.81 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=58.1
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHh------cCCcccC-CHHHHhccCcEEEEEcCChHHH
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQN------VGGLIAN-SPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~------~G~~~~~-s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
|.|||||| .|+.|..|.+.|.++.+ ++....-+.+.-+.+.+ ....+.+ +..+..+++|++|+|+|...+.
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~s~ 92 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASY 92 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHH
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHHHH
Confidence 35999996 69999999999998763 56655422211111211 2233322 4555557899999999987744
Q ss_pred HHHHccccchhhhCCCCCEEEecCCC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
+-+ +.+ .|..|||.|+.
T Consensus 93 ~~~--------~~~-~g~~VIDlSsd 109 (351)
T 1vkn_A 93 DLV--------REL-KGVKIIDLGAD 109 (351)
T ss_dssp HHH--------TTC-CSCEEEESSST
T ss_pred HHH--------HHh-CCCEEEECChh
Confidence 332 334 79999999985
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.034 Score=60.21 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=48.4
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh-------hHHHHH---HhcCCcc----c---CCHHHHhccCcEEE
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYR-------PTLTKF---QNVGGLI----A---NSPAEAAKDVGVLV 207 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~-------~~~~~l---~~~G~~~----~---~s~~e~~~~aDvV~ 207 (988)
+|+|.|.|. |.+|..++..|++.||+|++.+|++ ++.+.+ ...|+.. . +++.++++++|+||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 81 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence 368999996 9999999999999999999999987 554433 3345432 1 13345566777777
Q ss_pred EEcCC
Q 001973 208 IMVTN 212 (988)
Q Consensus 208 l~vp~ 212 (988)
.+.+.
T Consensus 82 ~~a~~ 86 (307)
T 2gas_A 82 CAAGR 86 (307)
T ss_dssp ECSSS
T ss_pred ECCcc
Confidence 77653
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.018 Score=64.44 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=47.0
Q ss_pred CCCCCeEEEEc-cchHHHHHHHHHHhC-CCeEEEEeCChhHHHHHHh-cCCc-----cc---CCHHHHhccCcEEEEEc
Q 001973 143 SNSVTRVGFIG-LGAMGFGMATHLLRS-NFTVIGYDVYRPTLTKFQN-VGGL-----IA---NSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 143 ~~~~~kIgiIG-~G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~-~G~~-----~~---~s~~e~~~~aDvV~l~v 210 (988)
.+++|+|.|.| .|.+|+.++..|.+. ||+|++.+|++++...+.. .++. .. +++.++++++|+||-+.
T Consensus 21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A 99 (372)
T 3slg_A 21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLV 99 (372)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECB
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcC
Confidence 34457999999 699999999999998 9999999999876655433 1221 11 12334556677777644
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.018 Score=61.07 Aligned_cols=83 Identities=17% Similarity=0.064 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCch-hhhccc--ccccc-CCCCc-chHHHHHHhHHHHHHHHHhcC
Q 001973 6 LEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSW-IFKNYI--PNLLR-GDAKL-HFLNAFIQNLGIALDMAKTLA 80 (988)
Q Consensus 6 l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~-~~~~~~--~~~~~-~~~~~-f~l~l~~KDl~la~~~a~~~g 80 (988)
.+...+.+++|+ +++.|+|++.+++++..+..+++ ++..+. |.++. ..++| |++..+.||++ +.|
T Consensus 171 ~~~~~~~~la~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~p~~~~~~~~~~l~-------~~g 240 (259)
T 2ahr_A 171 YIYLFIEALAKA---GVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLMELE-------RLG 240 (259)
T ss_dssp HHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHCCTTSHHHHHHHHHH-------HHT
T ss_pred HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChhHHHHHHHHH-------HCC
Confidence 344555666665 78999999999999999998888 565554 77774 44678 99999999985 577
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 001973 81 FPLPLLAVAHQQLILGLS 98 (988)
Q Consensus 81 ~~~p~~~~~~~~~~~a~~ 98 (988)
++-.+.+++...++++.+
T Consensus 241 ~~~~~~~a~~~~~~r~~~ 258 (259)
T 2ahr_A 241 LTATVSSAIDKTIDKAKS 258 (259)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 777888888888887754
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.039 Score=60.22 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=47.3
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh------hHHHHH---HhcCCcc-------cCCHHHHhccCcEEEE
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYR------PTLTKF---QNVGGLI-------ANSPAEAAKDVGVLVI 208 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~------~~~~~l---~~~G~~~-------~~s~~e~~~~aDvV~l 208 (988)
+|+|.|.|. |.+|..++..|++.||+|++.+|++ ++.+.+ ...++.+ .+++.++++++|+||.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~ 83 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS 83 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 468999995 9999999999999999999999986 333332 3334432 1134455667777777
Q ss_pred EcCC
Q 001973 209 MVTN 212 (988)
Q Consensus 209 ~vp~ 212 (988)
+...
T Consensus 84 ~a~~ 87 (321)
T 3c1o_A 84 ALPF 87 (321)
T ss_dssp CCCG
T ss_pred CCCc
Confidence 6653
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.013 Score=60.20 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=33.9
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHH
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLT 183 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~ 183 (988)
|||.|.| .|.+|..++..|++.|++|++.+|++++.+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 38 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVP 38 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchh
Confidence 4899999 899999999999999999999999987654
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.0071 Score=62.17 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=47.6
Q ss_pred CeEEEEccchHHHHHHHHHHh-CCCeE-EEEeCChhHHHHHHhcCCc--ccCCHHHHhc-cCcEEEEEcCChH
Q 001973 147 TRVGFIGLGAMGFGMATHLLR-SNFTV-IGYDVYRPTLTKFQNVGGL--IANSPAEAAK-DVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~-~G~~V-~v~dr~~~~~~~l~~~G~~--~~~s~~e~~~-~aDvV~l~vp~~~ 214 (988)
++|+|||+|.+|..+++.+.. .|+++ -++|.++++...... |.. ..+++.+.++ +.|+|++|+|+..
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~-gv~V~~~~dl~ell~~~ID~ViIA~Ps~~ 152 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVR-GGVIEHVDLLPQRVPGRIEIALLTVPREA 152 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEET-TEEEEEGGGHHHHSTTTCCEEEECSCHHH
T ss_pred CEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhc-CCeeecHHhHHHHHHcCCCEEEEeCCchh
Confidence 589999999999999996322 27774 456999887643221 322 3566777765 5899999998754
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.12 Score=58.63 Aligned_cols=69 Identities=20% Similarity=0.161 Sum_probs=47.3
Q ss_pred CCeEEEEccchH-HHHHHHHHHh--C---CCeEEEEeCChhHHHHHHh-------cCC--cccCCHHHHhccCcEEEEEc
Q 001973 146 VTRVGFIGLGAM-GFGMATHLLR--S---NFTVIGYDVYRPTLTKFQN-------VGG--LIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~G~m-G~~lA~~L~~--~---G~~V~v~dr~~~~~~~l~~-------~G~--~~~~s~~e~~~~aDvV~l~v 210 (988)
+|||+|||+|.. +..+...|+. . +.+|.+||+++++++.... ... ..+++..+++++||+|+++.
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Viita 81 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF 81 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEEcC
Confidence 369999999985 2222234454 3 5689999999988654221 112 23567788999999999999
Q ss_pred CChH
Q 001973 211 TNEA 214 (988)
Q Consensus 211 p~~~ 214 (988)
..+.
T Consensus 82 gvg~ 85 (417)
T 1up7_A 82 RPGG 85 (417)
T ss_dssp CTTH
T ss_pred CCCC
Confidence 6554
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.078 Score=58.97 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=49.7
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHH--HHHHhc-CCcc--cC---C---HHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTL--TKFQNV-GGLI--AN---S---PAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~--~~l~~~-G~~~--~~---s---~~e~~~~aDvV~l~vp~ 212 (988)
.|+|.|.| .|.+|..+++.|++.|++|++.+|++++. +.+... ++.. .+ + +.++++++|+||.+...
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~ 83 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 83 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence 46899999 59999999999999999999999988765 444432 3211 22 2 44567889999877653
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.022 Score=62.67 Aligned_cols=41 Identities=10% Similarity=0.216 Sum_probs=35.4
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
+|+|.|.| .|.+|+.++..|++.|++|++.+|++++.+.+.
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~ 54 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLA 54 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGG
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhc
Confidence 46999999 599999999999999999999999877654443
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=94.61 E-value=0.054 Score=59.75 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=29.9
Q ss_pred CeEEEEccchHHHHHHHHHHhC-CCeEEEE-eC--ChhHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS-NFTVIGY-DV--YRPTLTKFQ 186 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~-G~~V~v~-dr--~~~~~~~l~ 186 (988)
+||||+|+|++|..+++.|.++ +.+|... |+ +++....+.
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll 47 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMF 47 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHH
T ss_pred eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhh
Confidence 5999999999999999999876 4565544 53 555554543
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.054 Score=62.75 Aligned_cols=64 Identities=14% Similarity=0.260 Sum_probs=46.4
Q ss_pred CeEEEEccchHHHH--HHHHHHh------CCCeEEEEeCChhHHHHHH--------hcC----CcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFG--MATHLLR------SNFTVIGYDVYRPTLTKFQ--------NVG----GLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~--lA~~L~~------~G~~V~v~dr~~~~~~~l~--------~~G----~~~~~s~~e~~~~aDvV 206 (988)
|||+|||.|..|.+ +...++. .+.+|.++|+++++++... ..| +..++|..+++++||+|
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V 80 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI 80 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence 59999999998865 2233332 2357999999998875421 123 23478999999999999
Q ss_pred EEEc
Q 001973 207 VIMV 210 (988)
Q Consensus 207 ~l~v 210 (988)
|++.
T Consensus 81 i~~~ 84 (477)
T 3u95_A 81 INTA 84 (477)
T ss_dssp EECC
T ss_pred EECc
Confidence 9986
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.086 Score=57.66 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=48.2
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCC--eEEEEeC--ChhHHHH----HHhc------CCccc--C-CHHHHhccCcEEEE
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNF--TVIGYDV--YRPTLTK----FQNV------GGLIA--N-SPAEAAKDVGVLVI 208 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~--~V~v~dr--~~~~~~~----l~~~------G~~~~--~-s~~e~~~~aDvV~l 208 (988)
|||.|+|+ |.+|++++..|+..|+ ++.++|+ ++++.+. +.+. ...+. + ++.++++++|+||+
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~ 80 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence 59999999 9999999999998885 6999999 7654432 3221 11222 1 25788999999999
Q ss_pred EcC
Q 001973 209 MVT 211 (988)
Q Consensus 209 ~vp 211 (988)
+..
T Consensus 81 ~Ag 83 (313)
T 1hye_A 81 TSG 83 (313)
T ss_dssp CCS
T ss_pred CCC
Confidence 874
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.077 Score=61.98 Aligned_cols=115 Identities=17% Similarity=0.280 Sum_probs=69.6
Q ss_pred CCCCeEEEEccchHHHH-HHHHHHhCCCeEEEEeCCh-hHHHHHHhcCCcccC-CHHHHhccCcEEEEEc--CCh-HHHH
Q 001973 144 NSVTRVGFIGLGAMGFG-MATHLLRSNFTVIGYDVYR-PTLTKFQNVGGLIAN-SPAEAAKDVGVLVIMV--TNE-AQAE 217 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~-lA~~L~~~G~~V~v~dr~~-~~~~~l~~~G~~~~~-s~~e~~~~aDvV~l~v--p~~-~~~~ 217 (988)
.+.++|.|||+|..|.+ +|+.|.+.|++|+++|... ...+.|.+.|+.+.. ...+.+.++|+|+.+- |.+ ..+.
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~ 99 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIV 99 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHH
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHH
Confidence 34579999999999995 9999999999999999764 345678888886532 1223456899999863 321 2222
Q ss_pred HHHc------cccchhhh-CCCCCEEEecCCCCHHHH-HHHHHHHHhcC
Q 001973 218 SVLY------GDLGAVSA-LSSGASIILSSTVSPGFV-SQLERRLQFEG 258 (988)
Q Consensus 218 ~vl~------~~~~i~~~-l~~g~ivId~st~~p~~~-~~l~~~l~~~~ 258 (988)
.... +.-+++.. ++...+|..+.|..-.|+ .-++..+...+
T Consensus 100 ~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g 148 (494)
T 4hv4_A 100 AAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG 148 (494)
T ss_dssp HHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC
Confidence 2211 00122222 233334555555555544 45566666643
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.031 Score=62.31 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=36.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC----CeE-EEEeCChhHHHHHHhc--CCcccCCHHHHhcc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN----FTV-IGYDVYRPTLTKFQNV--GGLIANSPAEAAKD 202 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G----~~V-~v~dr~~~~~~~l~~~--G~~~~~s~~e~~~~ 202 (988)
++||||||+|.||+.++..|.++. .+| .++|+++.. +.+. |+..++++.+.+++
T Consensus 4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~---~~~~~~gi~~~~~~~e~l~~ 64 (358)
T 1ebf_A 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSL---ISKDFSPLNVGSDWKAALAA 64 (358)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEE---ECSSCSCCSCTTCHHHHHHT
T ss_pred eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhh---hccccCCCCccccHHHHHhc
Confidence 369999999999999999999863 343 455754421 2222 55545677776654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.1 Score=55.20 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=56.6
Q ss_pred hcCCCCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 141 AKSNSVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 141 m~~~~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
|+..+.++|-|.| .|.+|..+|+.|++.|++|++.+|+.++.+.+.+. +.+.-..+.++..=+.+...++.+
T Consensus 24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~v~~~ 96 (262)
T 3rkr_A 24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVERE-------IVAAGGEAESHACDLSHSDAIAAF 96 (262)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCEEEEEECCTTCHHHHHHH
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHhCCceeEEEecCCCHHHHHHH
Confidence 4444445677776 58999999999999999999999999887665432 111111122222334455556665
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
+ +.+.....+=+++|++...
T Consensus 97 ~---~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 97 A---TGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp H---HHHHHHHSCCSEEEECCCC
T ss_pred H---HHHHHhcCCCCEEEECCCc
Confidence 5 3444444444677776554
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.019 Score=64.14 Aligned_cols=84 Identities=13% Similarity=0.210 Sum_probs=61.6
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCC---eEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNF---TVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
..||.|||. |..|..-+..+...|. +|++||+++.. .|..+ +.+.++|+||-|+.-....-.++.
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~------~g~~~-----~~i~~aDivIn~vlig~~aP~Lvt 282 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS------RGGPF-----DEIPQADIFINCIYLSKPIAPFTN 282 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT------TCSCC-----THHHHSSEEEECCCCCSSCCCSCC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc------cCCch-----hhHhhCCEEEECcCcCCCCCcccC
Confidence 458999999 9999999999999998 99999988632 14332 346699999999985221111111
Q ss_pred cccchhhhC-CCCCEEEecCCC
Q 001973 222 GDLGAVSAL-SSGASIILSSTV 242 (988)
Q Consensus 222 ~~~~i~~~l-~~g~ivId~st~ 242 (988)
++.++.+ ++|.+|||.|.-
T Consensus 283 --~e~v~~m~k~gsVIVDVA~D 302 (394)
T 2qrj_A 283 --MEKLNNPNRRLRTVVDVSAD 302 (394)
T ss_dssp --HHHHCCTTCCCCEEEETTCC
T ss_pred --HHHHhcCcCCCeEEEEEecC
Confidence 3445567 899999999853
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.17 Score=53.36 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=54.8
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+++-|.| .|-+|.++|+.|++.|++|.+.+|+.++.+++.+. .-....++-.=+.++.+++.++ +
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~v~~~~---~ 74 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAE----------IGPAAYAVQMDVTRQDSIDAAI---A 74 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCTTEEEEECCTTCHHHHHHHH---H
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hCCCceEEEeeCCCHHHHHHHH---H
Confidence 34666666 58999999999999999999999999887765532 0011122222345555666665 4
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
.+.+...+=+++|++...
T Consensus 75 ~~~~~~g~id~lv~~Ag~ 92 (259)
T 4e6p_A 75 ATVEHAGGLDILVNNAAL 92 (259)
T ss_dssp HHHHHSSSCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 444555455677776654
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.068 Score=59.03 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=32.1
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
++|+|.|.| .|.+|..++..|.+.|++|++.+|++.
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 60 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST 60 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 357999999 599999999999999999999999643
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.076 Score=55.32 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=35.5
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhC--CCeEEEEeCChhHHHHH
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRS--NFTVIGYDVYRPTLTKF 185 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l 185 (988)
+++|.|.| .|.+|..+++.|++. |++|++.+|++++.+.+
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~ 46 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI 46 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc
Confidence 46899998 699999999999999 89999999998876654
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=93.97 E-value=0.055 Score=57.90 Aligned_cols=65 Identities=18% Similarity=0.208 Sum_probs=48.3
Q ss_pred CeEEEEcc-chHHHHHHHHHHhC--CCeEEEEeCChhHHHHHHhcCCcc----c---CCHHHHhccCcEEEEEcC
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRS--NFTVIGYDVYRPTLTKFQNVGGLI----A---NSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~G~~~----~---~s~~e~~~~aDvV~l~vp 211 (988)
|+|.|.|. |.+|+.++..|.+. ||+|++.+|++++.+.+...++.. . +++.++++++|+||-+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 47899987 99999999999998 999999999988777665544432 1 123345566777776654
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.056 Score=58.72 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=42.7
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc------cCCHHHHhccCcEEEEEcC
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI------ANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~------~~s~~e~~~~aDvV~l~vp 211 (988)
|+|.|.| .|.+|+.++..|.+.|++|++.+|++...+ +. ++.. .+++.++++++|+||-+..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--------CCEEEECCCCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEccc
Confidence 6899999 699999999999999999999999955444 32 2211 2234445566677666543
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.029 Score=61.27 Aligned_cols=82 Identities=13% Similarity=-0.008 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHcCCCHH--HHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhcCCCCcH
Q 001973 9 VHLIASVEAISLGVQFGIHPW--VLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTLAFPLPL 85 (988)
Q Consensus 9 ~~~~~~aEal~la~~~Gld~~--~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~g~~~p~ 85 (988)
....++.|++.++++.|++++ .+.+.+.... .......+.|+ .|+.+ +.++.- -.++++.++|++.|+++|+
T Consensus 229 ~~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~---~~~~~~~~sm~-~d~~~g~~~E~~-~~~g~~~~~a~~~gv~~P~ 303 (317)
T 2qyt_A 229 ELLSLLEEVAELFRAKYGQVPDDVVQQLLDKQR---KMPPESTSSMH-SDFLQGGSTEVE-TLTGYVVREAEALRVDLPM 303 (317)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCSSHHHHHHHHHH---HC---------------------C-TTTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHh---ccCCCCCChHH-HHHHcCCccCHH-HHhhHHHHHHHHcCCCCCH
Confidence 455899999999999999974 7788876532 11122234444 35555 443222 2388999999999999999
Q ss_pred HHHHHHHHHH
Q 001973 86 LAVAHQQLIL 95 (988)
Q Consensus 86 ~~~~~~~~~~ 95 (988)
.+.+.+.+..
T Consensus 304 ~~~~~~~~~~ 313 (317)
T 2qyt_A 304 YKRMYRELVS 313 (317)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 9998887653
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=93.73 E-value=0.12 Score=56.57 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=36.7
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
+.|+|.|.|. |.+|+.++..|++.|++|++.+|++++.+.+.
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 52 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ 52 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHH
Confidence 3478999987 99999999999999999999999988765543
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.059 Score=60.58 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHH------HHhhccC-Cchhhhcccccccc-CC-CCc---------ch
Q 001973 2 VNDLLEGVHLIASVEAISLGVQF--GIHPWVLYD------IISNAAG-NSWIFKNYIPNLLR-GD-AKL---------HF 61 (988)
Q Consensus 2 ~nN~l~~~~~~~~aEal~la~~~--Gld~~~~~~------~l~~~~~-~s~~~~~~~~~~~~-~~-~~~---------f~ 61 (988)
.+|...+....++.|++.++++. |++++.+.+ .+..... .++. .++.+.. ++ ++. +.
T Consensus 242 ~~n~~~a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~~~~~~---~~~~~~~~g~~~~~~d~~~~~~~g~ 318 (375)
T 1yj8_A 242 PTNSKSAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLAGRNAK---CSAEFIKSTPKKTWEELENEILKGQ 318 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHSSSSHHH---HHHHHHHHTTSSCHHHHHHHHHTTC
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEeeeCCccHH---HHHHHHhcCCCCCHHHHHHhhcCCc
Confidence 47888899999999999999999 699988753 3443332 2221 1333333 31 221 22
Q ss_pred HHHHHHhHHHHHHHHHhcCC--CCcHHHHHHHHHHHHhhCcCCCCCchhHHHHH
Q 001973 62 LNAFIQNLGIALDMAKTLAF--PLPLLAVAHQQLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 62 l~l~~KDl~la~~~a~~~g~--~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
.....||++.+.++|++.|+ ++|+.+.+.+.+. ++.+...+++.+
T Consensus 319 ~~E~~~~~~~v~~~a~~~gv~~~~P~~~~v~~~~~-------~~~~~~~~~~~l 365 (375)
T 1yj8_A 319 KLQGTVTLKYVYHMIKEKNMTNEFPLFTVLHKISF-------ENEDPSSLLKTF 365 (375)
T ss_dssp CCHHHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHH-------SCCCTTHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh-------CCCCHHHHHHHH
Confidence 34678999999999999999 9999999988876 334555555544
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=93.61 E-value=0.24 Score=51.96 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=53.1
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+++-|.| .|-+|.++|+.|++.|++|.+.+|+++..+++.+. .-.....+-.=+.++.+++.++ +.
T Consensus 10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~d~~~v~~~~---~~ 76 (248)
T 3op4_A 10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDY----------LGDNGKGMALNVTNPESIEAVL---KA 76 (248)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hcccceEEEEeCCCHHHHHHHH---HH
Confidence 4555555 57899999999999999999999999887765432 0011122222345556666665 34
Q ss_pred hhhhCCCCCEEEecCCC
Q 001973 226 AVSALSSGASIILSSTV 242 (988)
Q Consensus 226 i~~~l~~g~ivId~st~ 242 (988)
+.+...+=+++|++...
T Consensus 77 ~~~~~g~iD~lv~nAg~ 93 (248)
T 3op4_A 77 ITDEFGGVDILVNNAGI 93 (248)
T ss_dssp HHHHHCCCSEEEECCCC
T ss_pred HHHHcCCCCEEEECCCC
Confidence 44444444677776553
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.27 Score=52.38 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=53.8
Q ss_pred CeEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 147 TRVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 147 ~kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.|+.+| |.|-+|.++|+.|++.|++|++.+|+.+..+++.+. ..+.-..+..+..=+.+..+++.++ +
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dv~d~~~v~~~~---~ 97 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAA-------FKQAGLEGRGAVLNVNDATAVDALV---E 97 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHHTCCCEEEECCTTCHHHHHHHH---H
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEEeCCCHHHHHHHH---H
Confidence 355555 568899999999999999999999999887665432 1111112333333445566666665 3
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+...+=+++|++..
T Consensus 98 ~~~~~~g~iD~lvnnAg 114 (270)
T 3ftp_A 98 STLKEFGALNVLVNNAG 114 (270)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 44444444467777654
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.19 Score=53.29 Aligned_cols=89 Identities=15% Similarity=0.025 Sum_probs=52.0
Q ss_pred HHhhhcCCCCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHH-HHhcCCcccCCHHHHhccCcEEEEEcCChH
Q 001973 137 KQITAKSNSVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTK-FQNVGGLIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 137 ~~~~m~~~~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
+.++||..+.++|-|.| .|-+|.++|+.|++.|++|++.+|++++..+ +.+.+ +.++-.=+.+..
T Consensus 18 ~~~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------~~~~~~Dv~~~~ 84 (260)
T 3gem_A 18 YFQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAG-------------AVALYGDFSCET 84 (260)
T ss_dssp ---------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHT-------------CEEEECCTTSHH
T ss_pred ccccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcC-------------CeEEECCCCCHH
Confidence 34444444445677776 4889999999999999999999999876432 22222 222333345556
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
.++.++ +.+.....+=+++|++..
T Consensus 85 ~v~~~~---~~~~~~~g~iD~lv~nAg 108 (260)
T 3gem_A 85 GIMAFI---DLLKTQTSSLRAVVHNAS 108 (260)
T ss_dssp HHHHHH---HHHHHHCSCCSEEEECCC
T ss_pred HHHHHH---HHHHHhcCCCCEEEECCC
Confidence 666665 344444444467777654
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=93.56 E-value=0.21 Score=55.28 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=54.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhC-CCeEEEEe--C-ChhHHHHHHhc----C-------------------Cccc--CCH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRS-NFTVIGYD--V-YRPTLTKFQNV----G-------------------GLIA--NSP 196 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~-G~~V~v~d--r-~~~~~~~l~~~----G-------------------~~~~--~s~ 196 (988)
++||||+|.|++|..+.+.|.++ .++|...+ + +.+....+.+. | +.+. .++
T Consensus 17 ~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp 96 (354)
T 3cps_A 17 QGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDP 96 (354)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCG
T ss_pred ceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCCh
Confidence 36999999999999999999887 57766554 2 33333333211 0 0111 144
Q ss_pred HHHh---ccCcEEEEEcCChHHHHHHHccccchhhhCCCCC--EEEecCC
Q 001973 197 AEAA---KDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGA--SIILSST 241 (988)
Q Consensus 197 ~e~~---~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~--ivId~st 241 (988)
.+.. .++|+||.|+|.....+.. ..++..|. +|||.+.
T Consensus 97 ~~i~w~~~~vDvV~eatg~~~s~e~a-------~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 97 AEIPWGASGAQIVCESTGVFTTEEKA-------SLHLKGGAKKVIISAPP 139 (354)
T ss_dssp GGCCHHHHTCCEEEECSSSCCSHHHH-------GGGGTTTCSEEEESSCC
T ss_pred HHCCcccCCCCEEEECCCchhhHHHH-------HHHHHcCCcEEEEeCCC
Confidence 4431 4789999999875543322 23455566 8888765
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.052 Score=61.14 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=31.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
|||.|||.|..|..+|..|+++|++|++|+++++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 6999999999999999999999999999998753
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.15 Score=56.46 Aligned_cols=71 Identities=17% Similarity=0.077 Sum_probs=52.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCccc-----CCHHHHhc------cCcEEEEEcCChH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIA-----NSPAEAAK------DVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~-----~s~~e~~~------~aDvV~l~vp~~~ 214 (988)
.+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|+... .+..+.+. ..|+||-++..+.
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~ 248 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPK 248 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCCHH
Confidence 589999999999999999999999 99999999999888887776421 12222221 3566776666544
Q ss_pred HHH
Q 001973 215 QAE 217 (988)
Q Consensus 215 ~~~ 217 (988)
.++
T Consensus 249 ~~~ 251 (348)
T 2d8a_A 249 ALE 251 (348)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.35 Score=56.80 Aligned_cols=112 Identities=19% Similarity=0.177 Sum_probs=70.4
Q ss_pred CeEEEEccchHHHH-HHHHHHhCCCeEEEEeCCh--hHHHHHHhcCCccc--CCHHHHhccCcEEEEEc--CC-hHHHHH
Q 001973 147 TRVGFIGLGAMGFG-MATHLLRSNFTVIGYDVYR--PTLTKFQNVGGLIA--NSPAEAAKDVGVLVIMV--TN-EAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~-lA~~L~~~G~~V~v~dr~~--~~~~~l~~~G~~~~--~s~~e~~~~aDvV~l~v--p~-~~~~~~ 218 (988)
++|-|||.|-.|.+ +|+.|.+.|++|+++|.+. ...+.|.+.|+.+. .++.....++|+|+.+- |. ...++.
T Consensus 20 ~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~l~~ 99 (524)
T 3hn7_A 20 MHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDVIEY 99 (524)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHHHHH
T ss_pred CEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHHHHH
Confidence 69999999999986 7888999999999999863 45677888888653 33444446789998863 32 222332
Q ss_pred HHc------cccchh-hhC-CCCCEEEecCCCCHHHHH-HHHHHHHhcC
Q 001973 219 VLY------GDLGAV-SAL-SSGASIILSSTVSPGFVS-QLERRLQFEG 258 (988)
Q Consensus 219 vl~------~~~~i~-~~l-~~g~ivId~st~~p~~~~-~l~~~l~~~~ 258 (988)
... +..+++ ..+ +...+|..+.|..-.|+. -++..+...+
T Consensus 100 a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G 148 (524)
T 3hn7_A 100 MLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG 148 (524)
T ss_dssp HHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 211 111222 222 233455556555555554 4566666643
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.047 Score=60.69 Aligned_cols=91 Identities=10% Similarity=0.060 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCC---CHHHHHH------HHhhccCCchhhhccccccccCCCCc---------chHH
Q 001973 2 VNDLLEGVHLIASVEAISLGVQFGI---HPWVLYD------IISNAAGNSWIFKNYIPNLLRGDAKL---------HFLN 63 (988)
Q Consensus 2 ~nN~l~~~~~~~~aEal~la~~~Gl---d~~~~~~------~l~~~~~~s~~~~~~~~~~~~~~~~~---------f~l~ 63 (988)
.+|...+....++.|++.++++.|+ +++.+.+ .+..... |... ..++.+.++.++. +...
T Consensus 225 ~~n~~~~~~~~~~~E~~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~ 302 (354)
T 1x0v_A 225 GDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYG-GRNR-KVAEAFARTGKSIEQLEKELLNGQKL 302 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHH-CHHH-HHHHHHHHHCCCHHHHHHHHSTTCCC
T ss_pred CccHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHHhhcc-cccH-HHHHHHHhcCCCHHHHHHhhcCCcEe
Confidence 4788888999999999999999999 8887643 3333222 2111 1233443312221 2233
Q ss_pred HHHHhHHHHHHHHHhcCC--CCcHHHHHHHHHH
Q 001973 64 AFIQNLGIALDMAKTLAF--PLPLLAVAHQQLI 94 (988)
Q Consensus 64 l~~KDl~la~~~a~~~g~--~~p~~~~~~~~~~ 94 (988)
...||++.+.++|++.|+ ++|+.+.+.+.+.
T Consensus 303 E~~~~~g~v~~~a~~~gv~~~~P~~~~v~~~~~ 335 (354)
T 1x0v_A 303 QGPETARELYSILQHKGLVDKFPLFMAVYKVCY 335 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGSHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 467999999999999999 9999999988876
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.096 Score=58.34 Aligned_cols=103 Identities=17% Similarity=0.041 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------HHhhccCCchhhhcc--ccccccCCCCc-------chHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYD------IISNAAGNSWIFKNY--IPNLLRGDAKL-------HFLNAF 65 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~------~l~~~~~~s~~~~~~--~~~~~~~~~~~-------f~l~l~ 65 (988)
+.+|...+....+++|...++++.|+++++|.+ .+...+ |+..+++ +..+-+| ++. ..+.-.
T Consensus 231 ~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~gl~g~gDl~~tc~--s~~sRN~~~G~~l~~g-~~~~~~~~~~~~~~eG 307 (356)
T 3k96_A 231 LGSNARAALITRGLTEMGRLVSVFGGKQETLTGLAGLGDLVLTCT--DNQSRNRRFGLALGEG-VDKKEAQQAIGQAIEG 307 (356)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHH--CTTCHHHHHHHHHHHT-CCHHHHHHHHCSCCSH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhCCChHhhcccchhhHHHHhcc--CCCCccHHHHHHHHCC-CCHHHHHHHcCCccch
Confidence 357899999999999999999999999999885 333221 2333333 2233333 221 234567
Q ss_pred HHhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHH
Q 001973 66 IQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVW 113 (988)
Q Consensus 66 ~KDl~la~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~ 113 (988)
.|+.+.+.+++++.|++||+.+.+.+++. ++.+....++.+
T Consensus 308 ~~t~~~~~~la~~~~v~~Pi~~~v~~il~-------~~~~~~~~~~~l 348 (356)
T 3k96_A 308 LYNTDQVHALAQKHAIEMPLTFQVHRILH-------EDLDPQQAVQEL 348 (356)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHh-------CCCCHHHHHHHH
Confidence 89999999999999999999999988875 344554444433
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=93.41 E-value=0.036 Score=57.76 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=33.1
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCC--eEEEEeCChhHH
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNF--TVIGYDVYRPTL 182 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~ 182 (988)
.|+|.|.| .|.+|..++..|++.|+ +|++.+|++++.
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~ 57 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTF 57 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCc
Confidence 46899998 69999999999999999 999999987653
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.12 Score=55.62 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=37.5
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
.+++-|+| .|-+|.+++..|++.|++|++++|++++.+++.+
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~ 161 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 161 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 35899999 9999999999999999999999999988776653
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.26 Score=51.69 Aligned_cols=41 Identities=22% Similarity=0.138 Sum_probs=34.3
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKF 185 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 185 (988)
+.++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~ 53 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKA 53 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 345677775 58999999999999999999999998776554
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.24 Score=52.92 Aligned_cols=88 Identities=15% Similarity=0.024 Sum_probs=54.2
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
+.+++-|.| .|-+|.++|+.|++.|++|++.+|+++..+++.+. +.+.-..+.++-.=+.+..+++.++
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~d~~~v~~~~--- 100 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADE-------IAGVGGKALPIRCDVTQPDQVRGML--- 100 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH-------HHHTTCCCEEEECCTTCHHHHHHHH---
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCeEEEEEcCCCCHHHHHHHH---
Confidence 345666666 58899999999999999999999998877665432 1111112222222345555666665
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
+.+.+...+=+++|++...
T Consensus 101 ~~~~~~~g~iD~lvnnAg~ 119 (276)
T 3r1i_A 101 DQMTGELGGIDIAVCNAGI 119 (276)
T ss_dssp HHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 3444444344666766543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.36 Score=54.10 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=54.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCccc-------CCHHHHhc-----cCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIA-------NSPAEAAK-----DVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~-------~s~~e~~~-----~aDvV~l~vp~ 212 (988)
..+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|+... .+..+.+. ..|+||-|+..
T Consensus 194 g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~ 273 (378)
T 3uko_A 194 GSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGN 273 (378)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCC
Confidence 4589999999999999998888998 89999999999998888887432 22222222 36777777766
Q ss_pred hHHHHHH
Q 001973 213 EAQAESV 219 (988)
Q Consensus 213 ~~~~~~v 219 (988)
+..++..
T Consensus 274 ~~~~~~~ 280 (378)
T 3uko_A 274 VSVMRAA 280 (378)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=93.25 E-value=0.15 Score=53.81 Aligned_cols=33 Identities=30% Similarity=0.319 Sum_probs=30.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~ 179 (988)
.+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 599999999999999999999996 799998775
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.075 Score=60.05 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=34.2
Q ss_pred hhhcCCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 139 ITAKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 139 ~~m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
.+|.+++..+|.|||.|..|..+|..|++.|++|+++++++.
T Consensus 19 ~~M~~~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 60 (398)
T 2xdo_A 19 SHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60 (398)
T ss_dssp ----CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred ccccccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 335445567999999999999999999999999999998753
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.24 Score=54.14 Aligned_cols=87 Identities=11% Similarity=0.081 Sum_probs=53.9
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEE--EcCChHHHHHHHc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI--MVTNEAQAESVLY 221 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l--~vp~~~~~~~vl~ 221 (988)
+.++|-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.+. +........+.++ =+.+...++.++
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dl~~~~~v~~~~- 78 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALAT-------LEAEGSGPEVMGVQLDVASREGFKMAA- 78 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHTCGGGEEEEECCTTCHHHHHHHH-
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCCeEEEEECCCCCHHHHHHHH-
Confidence 3456777765 8999999999999999999999999887765432 1111111122222 244555566655
Q ss_pred cccchhhhCCCCCEEEecCC
Q 001973 222 GDLGAVSALSSGASIILSST 241 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st 241 (988)
+.+.....+=+++|++..
T Consensus 79 --~~~~~~~g~id~lv~nAg 96 (319)
T 3ioy_A 79 --DEVEARFGPVSILCNNAG 96 (319)
T ss_dssp --HHHHHHTCCEEEEEECCC
T ss_pred --HHHHHhCCCCCEEEECCC
Confidence 344443333356666654
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.3 Score=52.18 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=58.5
Q ss_pred hcCCCCCeEEEEcc-ch--HHHHHHHHHHhCCCeEEEEeCCh--hHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHH
Q 001973 141 AKSNSVTRVGFIGL-GA--MGFGMATHLLRSNFTVIGYDVYR--PTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 141 m~~~~~~kIgiIG~-G~--mG~~lA~~L~~~G~~V~v~dr~~--~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
|...+.++|-|.|. |. +|.++|+.|++.|++|.+.+|+. +..+++.+.+. ...++-.=+.+...
T Consensus 21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~-----------~~~~~~~Dl~~~~~ 89 (280)
T 3nrc_A 21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFN-----------PAAVLPCDVISDQE 89 (280)
T ss_dssp -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGC-----------CSEEEECCTTCHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcC-----------CceEEEeecCCHHH
Confidence 44444567777785 55 99999999999999999999987 55565554321 12233333456666
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
++.++ +.+.....+=+++|++....
T Consensus 90 v~~~~---~~~~~~~g~id~li~nAg~~ 114 (280)
T 3nrc_A 90 IKDLF---VELGKVWDGLDAIVHSIAFA 114 (280)
T ss_dssp HHHHH---HHHHHHCSSCCEEEECCCCC
T ss_pred HHHHH---HHHHHHcCCCCEEEECCccC
Confidence 77766 45555555557788776543
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.11 Score=59.65 Aligned_cols=64 Identities=19% Similarity=0.099 Sum_probs=48.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHH--HHHHhcCCccc--CCHHHHhccCcEEEEEc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTL--TKFQNVGGLIA--NSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~--~~l~~~G~~~~--~s~~e~~~~aDvV~l~v 210 (988)
.+||.|||+|..|.+.|+.|.+.||+|+++|.+.... ..+. .|+.+. ....+.++.+|.|+++.
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~ 72 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASP 72 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECT
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCC
Confidence 3589999999999999999999999999999764321 3344 576652 21355666899988874
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.073 Score=55.14 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=31.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
..|.|||+|.-|...|..|+++|++|+++++++
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 469999999999999999999999999999865
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.47 Score=53.04 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=41.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~ 191 (988)
..+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|+.
T Consensus 196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 242 (376)
T 1e3i_A 196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT 242 (376)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence 3589999999999999998888998 899999999999988887764
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.31 Score=51.53 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=53.9
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEE--EcCChHHHHHHHccc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI--MVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l--~vp~~~~~~~vl~~~ 223 (988)
+++-|.|. |-+|.++|..|++.|++|++.+|++++.+++.+. +.+. ..++.++ =+.++.+++.++
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~--~~~~~~~~~Dv~~~~~v~~~~--- 79 (264)
T 3ucx_A 12 KVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQ-------VTDT--GRRALSVGTDITDDAQVAHLV--- 79 (264)
T ss_dssp CEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHH---
T ss_pred cEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH-------HHhc--CCcEEEEEcCCCCHHHHHHHH---
Confidence 45666664 6799999999999999999999999887765432 1111 1223332 345556666665
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+.+.+...+=+++|++..
T Consensus 80 ~~~~~~~g~id~lv~nAg 97 (264)
T 3ucx_A 80 DETMKAYGRVDVVINNAF 97 (264)
T ss_dssp HHHHHHTSCCSEEEECCC
T ss_pred HHHHHHcCCCcEEEECCC
Confidence 445555545567777653
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.96 E-value=0.52 Score=52.67 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=41.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~ 191 (988)
..+|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|+.
T Consensus 192 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 238 (374)
T 2jhf_A 192 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence 3589999999999999998888998 899999999999988887764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.49 Score=52.39 Aligned_cols=46 Identities=22% Similarity=0.101 Sum_probs=41.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~ 191 (988)
..+|.|+|+|.+|...+..+...|.+|++.++++++.+.+.+.|+.
T Consensus 169 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 214 (352)
T 1e3j_A 169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD 214 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC
Confidence 3589999999999999998888999999999999999888887763
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.048 Score=60.91 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=52.2
Q ss_pred CeEEEEc-cchHHHHHHH-HHHhCCC---eEEEEeCC-hhH-HHHHHhcCCccc--CCHHHHhccCcEEEEEcCChHHHH
Q 001973 147 TRVGFIG-LGAMGFGMAT-HLLRSNF---TVIGYDVY-RPT-LTKFQNVGGLIA--NSPAEAAKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~-~L~~~G~---~V~v~dr~-~~~-~~~l~~~G~~~~--~s~~e~~~~aDvV~l~vp~~~~~~ 217 (988)
+||+|+| .|++|..+.+ .|.++++ .++.+..+ ..+ +..+......+. .++.+ .+++|+||.|+|.....+
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~~s~~ 80 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGDYTNE 80 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCchhHHH
Confidence 6999999 9999999999 5665654 34444332 111 101111122222 23444 578999999999755333
Q ss_pred HHHccccchhhhCCCCC--EEEecCCC
Q 001973 218 SVLYGDLGAVSALSSGA--SIILSSTV 242 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~--ivId~st~ 242 (988)
.+ .. ++..|. +|||.|+.
T Consensus 81 ~a----~~---~~~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 81 IY----PK---LRESGWQGYWIDAASS 100 (367)
T ss_dssp HH----HH---HHHTTCCCEEEECSST
T ss_pred HH----HH---HHHCCCCEEEEcCChh
Confidence 22 12 223454 99998864
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.051 Score=58.68 Aligned_cols=58 Identities=16% Similarity=-0.016 Sum_probs=41.8
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~v 210 (988)
|||-|.|. |.+|+.++..|.+.||+|++..|+++..+ +.......+.++++|.|+-+.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~------~~~~~~~~~~l~~~d~vihla 59 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR------ITWDELAASGLPSCDAAVNLA 59 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE------EEHHHHHHHCCCSCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe------eecchhhHhhccCCCEEEEec
Confidence 69999997 99999999999999999999999865310 111111223456778777544
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.2 Score=52.69 Aligned_cols=83 Identities=20% Similarity=0.161 Sum_probs=47.7
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+++-|.| .|-+|.++|+.|++.|++|++.+|+++..+++.+. .-..+.++-.=+.+..+++.++ +.
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~---~~ 74 (257)
T 3tpc_A 8 RVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAE----------LGAAVRFRNADVTNEADATAAL---AF 74 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC----------------------CEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH----------hCCceEEEEccCCCHHHHHHHH---HH
Confidence 3455555 58999999999999999999999998776554322 0112233333345555666665 34
Q ss_pred hhhhCCCCCEEEecCCC
Q 001973 226 AVSALSSGASIILSSTV 242 (988)
Q Consensus 226 i~~~l~~g~ivId~st~ 242 (988)
+.+...+=+++|++...
T Consensus 75 ~~~~~g~id~lv~nAg~ 91 (257)
T 3tpc_A 75 AKQEFGHVHGLVNCAGT 91 (257)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHcCCCCEEEECCCC
Confidence 44444344667766544
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.91 E-value=0.28 Score=54.11 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=41.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~ 191 (988)
..+|.|+|+|.+|...+..+...|.+|++.++++++.+.+.+.|+.
T Consensus 165 g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 210 (339)
T 1rjw_A 165 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD 210 (339)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCC
Confidence 4689999999999999999999999999999999999888877753
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.06 Score=60.43 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=33.3
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhH
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPT 181 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~ 181 (988)
++|+|.|.|. |.+|..++..|++.||+|++.+|++..
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 65 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE 65 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 3579999997 999999999999999999999998654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.5 Score=52.77 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=40.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~ 191 (988)
..+|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|+.
T Consensus 192 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 238 (373)
T 1p0f_A 192 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT 238 (373)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc
Confidence 4589999999999999988888898 799999999999988888864
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.088 Score=58.04 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=43.0
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------cCCHHHHhccCcEEEEEc
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~v 210 (988)
.+.|+|.|.|. |.+|..++..|++.|++|++.+|+++. .++.. .++..++++++|+||-+.
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 85 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG------TGGEEVVGSLEDGQALSDAIMGVSAVLHLG 85 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS------SCCSEEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC------CCccEEecCcCCHHHHHHHHhCCCEEEECC
Confidence 34578999997 999999999999999999999998764 22221 112345566777777654
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.17 Score=59.09 Aligned_cols=64 Identities=28% Similarity=0.573 Sum_probs=49.7
Q ss_pred CCeEEEEccchHHHH-HHHHHHhCCCeEEEEeCChh-HHHHHHhcCCccc--CCHHHHhccCcEEEEEc
Q 001973 146 VTRVGFIGLGAMGFG-MATHLLRSNFTVIGYDVYRP-TLTKFQNVGGLIA--NSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~G~~~~--~s~~e~~~~aDvV~l~v 210 (988)
.++|.|||+|..|.+ +|+.|.+.|++|+++|.... ..+.|.+.|+.+. .+. +.++.+|+|+..-
T Consensus 19 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s~ 86 (491)
T 2f00_A 19 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRP-ENVRDASVVVVSS 86 (491)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCG-GGGTTCSEEEECT
T ss_pred CCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCCCEEECCCCH-HHcCCCCEEEECC
Confidence 468999999999997 99999999999999997653 3456777787653 223 3456889888863
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.11 Score=61.00 Aligned_cols=64 Identities=20% Similarity=0.155 Sum_probs=47.9
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
+|||.|.| .|.+|+.++..|.+.||+|++.+|++.+.+.+ .....+...++++++|+||-+...
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v---~~d~~~~~~~~l~~~D~Vih~A~~ 211 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKR---FWDPLNPASDLLDGADVLVHLAGE 211 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCE---ECCTTSCCTTTTTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccce---eecccchhHHhcCCCCEEEECCCC
Confidence 57999999 69999999999999999999999987653211 111223445666788888877653
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.22 Score=52.60 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=55.8
Q ss_pred CCCeEEEEcc-c-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEE--EEcCChHHHHHHH
Q 001973 145 SVTRVGFIGL-G-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV--IMVTNEAQAESVL 220 (988)
Q Consensus 145 ~~~kIgiIG~-G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~--l~vp~~~~~~~vl 220 (988)
+.+++-|.|. | -+|..+++.|++.|++|++.+|+.++.+++.+. +.+ ....++.+ .=+.+...++.++
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~-~~~~~~~~~~~Dl~~~~~v~~~~ 92 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQ-------LAD-LGLGRVEAVVCDVTSTEAVDALI 92 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHT-TCSSCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-------HHh-cCCCceEEEEeCCCCHHHHHHHH
Confidence 4467888898 8 499999999999999999999999887665432 000 00122222 2344555666665
Q ss_pred ccccchhhhCCCCCEEEecCCC
Q 001973 221 YGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~ 242 (988)
+.+.+...+=+++|++...
T Consensus 93 ---~~~~~~~g~id~li~~Ag~ 111 (266)
T 3o38_A 93 ---TQTVEKAGRLDVLVNNAGL 111 (266)
T ss_dssp ---HHHHHHHSCCCEEEECCCC
T ss_pred ---HHHHHHhCCCcEEEECCCc
Confidence 3444444444677776553
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=92.61 E-value=0.33 Score=51.07 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=52.4
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+++-|.| .|-+|.++|+.|++.|++|.+.+|++++.+++.+.- -..+.++-.=+.+...++.++ +
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~---~ 74 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF----------GPRVHALRSDIADLNEIAVLG---A 74 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------GGGEEEEECCTTCHHHHHHHH---H
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCcceEEEccCCCHHHHHHHH---H
Confidence 34566665 578999999999999999999999998887765420 011222222244555566555 3
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
.+.....+=+++|++...
T Consensus 75 ~~~~~~g~id~lv~nAg~ 92 (255)
T 4eso_A 75 AAGQTLGAIDLLHINAGV 92 (255)
T ss_dssp HHHHHHSSEEEEEECCCC
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 333333333566665543
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.60 E-value=0.099 Score=57.42 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=33.3
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHH
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTL 182 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~ 182 (988)
++|+|-|.| .|.+|..++..|++.|++|++.+|+++..
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~ 42 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSK 42 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcch
Confidence 457999998 59999999999999999999999976543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.59 E-value=0.62 Score=52.00 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=41.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~ 191 (988)
..+|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|+.
T Consensus 193 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 239 (374)
T 1cdo_A 193 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT 239 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc
Confidence 3589999999999999998888998 799999999999988887864
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.16 Score=56.28 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=64.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc-CCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA-NSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~-~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
..+|.|+|+|.+|...+..+...|.+|++.++++++.+.+.+.|+... .+..+..+..|+||-++..+..++..+
T Consensus 177 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~~~---- 252 (348)
T 3two_A 177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYL---- 252 (348)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHHHHH----
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHHHHH----
Confidence 358999999999999999998999999999999999999988886432 333333336788888888764454443
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
..+.++-.++..+.
T Consensus 253 ---~~l~~~G~iv~~G~ 266 (348)
T 3two_A 253 ---KLLTYNGDLALVGL 266 (348)
T ss_dssp ---TTEEEEEEEEECCC
T ss_pred ---HHHhcCCEEEEECC
Confidence 23444445555443
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.45 Score=49.98 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=53.1
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+++-|.|. |-+|.++|+.|++.|++|++.+|++++.+++.+. .-....++..=+.+..+++.++ +
T Consensus 9 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~---~ 75 (261)
T 3n74_A 9 GKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGE----------IGDAALAVAADISKEADVDAAV---E 75 (261)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCTTEEEEECCTTSHHHHHHHH---H
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH----------hCCceEEEEecCCCHHHHHHHH---H
Confidence 456777775 6899999999999999999999999888776542 0011122222344555555555 3
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+...+=+++|++..
T Consensus 76 ~~~~~~g~id~li~~Ag 92 (261)
T 3n74_A 76 AALSKFGKVDILVNNAG 92 (261)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHhcCCCCEEEECCc
Confidence 44343334456666654
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.024 Score=62.66 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=53.7
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCe---EEEEeCChhHHHH--HHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFT---VIGYDVYRPTLTK--FQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~--l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
+||+||| .|+.|..|.+.|.++.|+ +..+.-+...-+. +......+.+-..+.++++|+||+|+|.....+.+
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~a- 80 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAMSKVQA- 80 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSCHHHHHHHH-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCChHHHHHHH-
Confidence 5899999 899999999999998654 4444321110000 11001111111123357899999999976543322
Q ss_pred ccccchhhhCCCCCEEEecCCC
Q 001973 221 YGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~ 242 (988)
..++..|..|||.|+-
T Consensus 81 ------~~~~~~G~~vID~Sa~ 96 (344)
T 3tz6_A 81 ------PRFAAAGVTVIDNSSA 96 (344)
T ss_dssp ------HHHHHTTCEEEECSST
T ss_pred ------HHHHhCCCEEEECCCc
Confidence 1234568899999985
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.64 Score=48.56 Aligned_cols=87 Identities=11% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+++-|.|. |.+|..+|+.|++.|++|++.+|+++..+++.+. ..+.-..+.++-.=+.++.+++.++ +
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~---~ 78 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQ-------IVADGGTAISVAVDVSDPESAKAMA---D 78 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCEEEEEECCTTSHHHHHHHH---H
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-------HHhcCCcEEEEEccCCCHHHHHHHH---H
Confidence 346667665 8899999999999999999999999887765532 0110011222222344555666665 3
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
.+.+...+=+++|++...
T Consensus 79 ~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 79 RTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 444444445677777654
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.1 Score=58.01 Aligned_cols=94 Identities=16% Similarity=0.226 Sum_probs=66.3
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh-------hHHHHH----Hhc-C-CcccCCHHHHhccCcEEEEEc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR-------PTLTKF----QNV-G-GLIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~-------~~~~~l----~~~-G-~~~~~s~~e~~~~aDvV~l~v 210 (988)
...||.|+|.|..|.++|+.+...|. +|+++|++- +.+..+ ... . .....++.|+++.+|++|=+.
T Consensus 187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~S 266 (398)
T 2a9f_A 187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVS 266 (398)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECC
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecC
Confidence 45699999999999999999999998 999999872 112221 111 1 112457999999999876553
Q ss_pred CChHHHHHHHccccchhhhCCCCCEEEecCCCCHH
Q 001973 211 TNEAQAESVLYGDLGAVSALSSGASIILSSTVSPG 245 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~ 245 (988)
. +. ++. +++.+.+.++.+|+++|+-.|+
T Consensus 267 a-pg----l~T--~EmVk~Ma~~pIIfalsNPt~E 294 (398)
T 2a9f_A 267 A-PG----VLK--AEWISKMAARPVIFAMANPIPE 294 (398)
T ss_dssp S-TT----CCC--HHHHHTSCSSCEEEECCSSSCS
T ss_pred C-CC----CCC--HHHHHhhCCCCEEEECCCCCcc
Confidence 3 33 111 3456677899999999987653
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.45 E-value=0.39 Score=50.03 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=54.4
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+++-|.| .|.+|..+|+.|++.|++|++.+|++++.+++.+. ..+.-..+.++-.=+.++..++.++ +.
T Consensus 6 k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~---~~ 75 (247)
T 3lyl_A 6 KVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENS-------MKEKGFKARGLVLNISDIESIQNFF---AE 75 (247)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCceEEEEecCCCHHHHHHHH---HH
Confidence 4566665 58999999999999999999999999887765432 1110011222222345556666665 34
Q ss_pred hhhhCCCCCEEEecCCC
Q 001973 226 AVSALSSGASIILSSTV 242 (988)
Q Consensus 226 i~~~l~~g~ivId~st~ 242 (988)
+.....+=+++|++...
T Consensus 76 ~~~~~~~id~li~~Ag~ 92 (247)
T 3lyl_A 76 IKAENLAIDILVNNAGI 92 (247)
T ss_dssp HHHTTCCCSEEEECCCC
T ss_pred HHHHcCCCCEEEECCCC
Confidence 44444444677777654
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.42 E-value=0.31 Score=51.72 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=52.6
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEE--EEcCChHHHHHHHccc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV--IMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~--l~vp~~~~~~~vl~~~ 223 (988)
+++-|.|. |-+|.++|+.|++.|++|.+.+|++++.+++.+. +.+. ..++.+ .=+.+..+++.++
T Consensus 5 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------l~~~--~~~~~~~~~Dv~d~~~v~~~~--- 72 (264)
T 3tfo_A 5 KVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATE-------IRDA--GGTALAQVLDVTDRHSVAAFA--- 72 (264)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHT--TCEEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEcCCCCHHHHHHHH---
Confidence 45666664 7899999999999999999999999887765432 1111 122222 2244555666655
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
+.+.+...+=+++|++...
T Consensus 73 ~~~~~~~g~iD~lVnnAG~ 91 (264)
T 3tfo_A 73 QAAVDTWGRIDVLVNNAGV 91 (264)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 3444444444667766543
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=92.42 E-value=0.24 Score=52.07 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=34.0
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
+++-|.| .|-+|.++|+.|++.|++|++.+|++++.+++.+
T Consensus 8 k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (252)
T 3h7a_A 8 ATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVA 49 (252)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4566665 5689999999999999999999999988766543
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=0.089 Score=56.12 Aligned_cols=64 Identities=13% Similarity=0.219 Sum_probs=46.1
Q ss_pred eEEEEcc-chHHHHHHHHHHhC--CCeEEEEeCChhHHHHHHhcCCcc----c---CCHHHHhccCcEEEEEcC
Q 001973 148 RVGFIGL-GAMGFGMATHLLRS--NFTVIGYDVYRPTLTKFQNVGGLI----A---NSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 148 kIgiIG~-G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~G~~~----~---~s~~e~~~~aDvV~l~vp 211 (988)
+|.|.|. |.+|..++..|.+. |++|++.+|++++.+.+...++.. . +++.++++++|+||-+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4788986 99999999999998 999999999988776665544322 1 123345556677666543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.59 Score=52.13 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=40.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~ 191 (988)
..+|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|+.
T Consensus 191 g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 237 (373)
T 2fzw_A 191 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT 237 (373)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence 3589999999999999998888898 899999999999888887764
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.27 Score=52.38 Aligned_cols=84 Identities=10% Similarity=0.002 Sum_probs=51.6
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEE--EcCChHHHHHHHccc
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI--MVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l--~vp~~~~~~~vl~~~ 223 (988)
+++-|.| .|-+|.++|+.|++.|++|.+.+|++++.+++.+. +.+. ..++.++ =+.+...++.++
T Consensus 27 k~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------l~~~--~~~~~~~~~Dv~d~~~v~~~~--- 94 (271)
T 4ibo_A 27 RTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQE-------FRNV--GHDAEAVAFDVTSESEIIEAF--- 94 (271)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHH-------HHHT--TCCEEECCCCTTCHHHHHHHH---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhc--CCceEEEEcCCCCHHHHHHHH---
Confidence 3454554 58999999999999999999999999887665432 0000 1122222 234455566655
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
+.+.....+=+++|++...
T Consensus 95 ~~~~~~~g~iD~lv~nAg~ 113 (271)
T 4ibo_A 95 ARLDEQGIDVDILVNNAGI 113 (271)
T ss_dssp HHHHHHTCCCCEEEECCCC
T ss_pred HHHHHHCCCCCEEEECCCC
Confidence 3444444444677776553
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=0.38 Score=50.54 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=53.8
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|..+| |.+-+|.++|+.|++.|++|.+.||++++.+++.+++.. +..+-.=+.++.+++.++ +.
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~-----------~~~~~~Dv~~~~~v~~~v---~~ 68 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPN-----------LFYFHGDVADPLTLKKFV---EY 68 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTT-----------EEEEECCTTSHHHHHHHH---HH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC-----------EEEEEecCCCHHHHHHHH---HH
Confidence 44455 577899999999999999999999999988877665421 111122245566666666 44
Q ss_pred hhhhCCCCCEEEecCC
Q 001973 226 AVSALSSGASIILSST 241 (988)
Q Consensus 226 i~~~l~~g~ivId~st 241 (988)
+.+...+=+++|+...
T Consensus 69 ~~~~~g~iDiLVNNAG 84 (247)
T 3ged_A 69 AMEKLQRIDVLVNNAC 84 (247)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 5555444467776653
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.31 E-value=0.34 Score=52.31 Aligned_cols=52 Identities=12% Similarity=-0.003 Sum_probs=34.8
Q ss_pred hHHHhhhcCCCCCeEEEE-ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 001973 135 LAKQITAKSNSVTRVGFI-GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQ 186 (988)
Q Consensus 135 ~~~~~~m~~~~~~kIgiI-G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 186 (988)
......||..+.+++-|. |.|.+|..+|+.|++.|++|++.+|++++.+++.
T Consensus 15 ~~~~~~m~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~ 67 (297)
T 1xhl_A 15 VPRGSHMARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETK 67 (297)
T ss_dssp --------CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred ccccccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 333334544344455555 5689999999999999999999999988776543
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=92.29 E-value=0.51 Score=52.33 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=40.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~ 191 (988)
..+|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|+.
T Consensus 172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 218 (356)
T 1pl8_A 172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD 218 (356)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC
Confidence 3589999999999999988888998 899999999999888887764
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.32 Score=51.99 Aligned_cols=86 Identities=12% Similarity=0.024 Sum_probs=52.3
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhc-cCcEEEE--EcCChHHHHHHHcc
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAK-DVGVLVI--MVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~-~aDvV~l--~vp~~~~~~~vl~~ 222 (988)
+++-|.| .|-+|.++|+.|++.|++|++.+|+++..+++.+. +.+.-. ...+.++ =+.++.+++.++
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~~Dv~~~~~v~~~~-- 82 (281)
T 3svt_A 12 RTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQE-------LEALGANGGAIRYEPTDITNEDETARAV-- 82 (281)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHTTCCSSCEEEEEECCTTSHHHHHHHH--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHHhCCCCceEEEEeCCCCCHHHHHHHH--
Confidence 4566665 68999999999999999999999999887665432 000000 0122222 244555566655
Q ss_pred ccchhhhCCCCCEEEecCCC
Q 001973 223 DLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~ 242 (988)
+.+.....+=+++|++...
T Consensus 83 -~~~~~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 83 -DAVTAWHGRLHGVVHCAGG 101 (281)
T ss_dssp -HHHHHHHSCCCEEEECCCC
T ss_pred -HHHHHHcCCCCEEEECCCc
Confidence 3444433344677776553
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=0.42 Score=55.36 Aligned_cols=64 Identities=25% Similarity=0.490 Sum_probs=49.7
Q ss_pred CCeEEEEccchHHHH-HHHHHHhCCCeEEEEeCChh-HHHHHHhcCCccc--CCHHHHhccCcEEEEEc
Q 001973 146 VTRVGFIGLGAMGFG-MATHLLRSNFTVIGYDVYRP-TLTKFQNVGGLIA--NSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~G~~~~--~s~~e~~~~aDvV~l~v 210 (988)
.++|.|||+|..|.+ +|+.|.+.|++|+++|.... ..+.|.+.|+.+. .+. +.++++|+|+..-
T Consensus 18 ~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s~ 85 (475)
T 1p3d_A 18 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAE-EHIEGASVVVVSS 85 (475)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCG-GGGTTCSEEEECT
T ss_pred CCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCH-HHcCCCCEEEECC
Confidence 468999999999997 99999999999999997653 3456777787653 233 3456889888863
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.2 Score=55.39 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=37.0
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhC-CC-eEEEEeCChhHHHHHHh
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRS-NF-TVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~-G~-~V~v~dr~~~~~~~l~~ 187 (988)
+.++|.|.| .|.+|..++..|++. |+ +|++++|++.+.+.+.+
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~ 65 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAM 65 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHH
Confidence 347899998 599999999999999 97 99999999887766543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.35 Score=51.06 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=54.9
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|+.+| |.+-+|.++|+.|++.|.+|.++||++++.+++.++ +.+.-.++..+-.=+.++.+++.++ +.
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~-------i~~~g~~~~~~~~Dvt~~~~v~~~~---~~ 77 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQE-------LRGMGKEVLGVKADVSKKKDVEEFV---RR 77 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTSHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEccCCCHHHHHHHH---HH
Confidence 67777 567899999999999999999999999887765542 1111111122222245666677766 45
Q ss_pred hhhhCCCCCEEEecCC
Q 001973 226 AVSALSSGASIILSST 241 (988)
Q Consensus 226 i~~~l~~g~ivId~st 241 (988)
+.+...+=+++|+...
T Consensus 78 ~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 78 TFETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCc
Confidence 5555545567777654
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.53 Score=55.82 Aligned_cols=64 Identities=6% Similarity=0.025 Sum_probs=50.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcc----cCCHHHH----hccCcEEEEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLI----ANSPAEA----AKDVGVLVIM 209 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~----~~s~~e~----~~~aDvV~l~ 209 (988)
.++|-|+|.|.+|..++..|.+.|++|++.|.++++++.+.+. |..+ .++.+.. ++++|.++++
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~t 199 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIAN 199 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEEC
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEEe
Confidence 3589999999999999999999999999999999999999887 6543 1222211 4577877763
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.14 Score=56.85 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=32.4
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
+++.+|.|||.|.+|.++|..|++.|++|+++|+..
T Consensus 4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 345689999999999999999999999999999863
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.05 E-value=0.44 Score=50.37 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=53.2
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.+++-|.| .|.+|..+++.|++.|++|++.+|++++.+++.+. .. ..+.++..=+.+..+++.++ +
T Consensus 6 ~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~---------~~~~~~~~D~~~~~~v~~~~---~ 72 (263)
T 2a4k_A 6 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA-LE---------AEAIAVVADVSDPKAVEAVF---A 72 (263)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-CC---------SSEEEEECCTTSHHHHHHHH---H
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-hc---------CceEEEEcCCCCHHHHHHHH---H
Confidence 35666665 58999999999999999999999999887766542 10 11122222244555566655 3
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+...+=+++|++..
T Consensus 73 ~~~~~~g~iD~lvnnAg 89 (263)
T 2a4k_A 73 EALEEFGRLHGVAHFAG 89 (263)
T ss_dssp HHHHHHSCCCEEEEGGG
T ss_pred HHHHHcCCCcEEEECCC
Confidence 44444444467777654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.39 Score=52.87 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=41.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~ 191 (988)
..+|.|+|+|.+|...+..+...|.+|++.++++++.+.+++.|+.
T Consensus 167 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 212 (340)
T 3s2e_A 167 GQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE 212 (340)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC
Confidence 3589999999999999999999999999999999999988887764
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=91.99 E-value=0.17 Score=54.91 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=28.7
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhH
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPT 181 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~ 181 (988)
|+|.|.|. |.+|..++..|++.||+|++.+|+++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 38 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR 38 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-----
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 58999997 999999999999999999999987654
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.43 Score=49.21 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=52.8
Q ss_pred eEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 148 RVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 148 kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
+|-|.| .|.+|.++|+.|++.|++|++.+|++++.+++.+.- -....++..=+.+...++.++ +.+
T Consensus 3 ~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~v~~~~---~~~ 69 (230)
T 3guy_A 3 LIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL----------SNNVGYRARDLASHQEVEQLF---EQL 69 (230)
T ss_dssp CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC----------SSCCCEEECCTTCHHHHHHHH---HSC
T ss_pred EEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH----------hhccCeEeecCCCHHHHHHHH---HHH
Confidence 566666 578999999999999999999999999888776531 112334444455666666665 232
Q ss_pred hhhCCCCCEEEecCCC
Q 001973 227 VSALSSGASIILSSTV 242 (988)
Q Consensus 227 ~~~l~~g~ivId~st~ 242 (988)
.. ...++|++...
T Consensus 70 ~~---~~d~lv~~Ag~ 82 (230)
T 3guy_A 70 DS---IPSTVVHSAGS 82 (230)
T ss_dssp SS---CCSEEEECCCC
T ss_pred hh---cCCEEEEeCCc
Confidence 22 12677776653
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=0.71 Score=49.63 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=54.7
Q ss_pred CCCeEEEEcc-ch--HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 145 SVTRVGFIGL-GA--MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 145 ~~~kIgiIG~-G~--mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+.+++-|.|. |. +|.++|+.|++.|++|.+.+|+.+..+.+.+. .+......++-.=+.+..+++.++
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~~~Dv~d~~~v~~~~- 100 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPL--------AEELGAFVAGHCDVADAASIDAVF- 100 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHH--------HHHHTCEEEEECCTTCHHHHHHHH-
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH--------HHhcCCceEEECCCCCHHHHHHHH-
Confidence 3457777887 45 99999999999999999999996543333221 111111122222245566677666
Q ss_pred cccchhhhCCCCCEEEecCCCC
Q 001973 222 GDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~ 243 (988)
+.+.....+=+++|++....
T Consensus 101 --~~~~~~~g~iD~lVnnAG~~ 120 (293)
T 3grk_A 101 --ETLEKKWGKLDFLVHAIGFS 120 (293)
T ss_dssp --HHHHHHTSCCSEEEECCCCC
T ss_pred --HHHHHhcCCCCEEEECCccC
Confidence 45555554557788877654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.37 Score=51.59 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=53.1
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEE--EcCChHHHHHHHc
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI--MVTNEAQAESVLY 221 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l--~vp~~~~~~~vl~ 221 (988)
+.+++-|.| .|-+|.++|+.|++.|++|.+.+|+.+..+++.+.= .+ ...++.++ =+.++.+++.++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l-------~~--~~~~~~~~~~Dv~d~~~v~~~~- 96 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEI-------VG--AGGQAIALEADVSDELQMRNAV- 96 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-------TT--TTCCEEEEECCTTCHHHHHHHH-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-------Hh--cCCcEEEEEccCCCHHHHHHHH-
Confidence 334556665 578999999999999999999999998877665420 00 01222222 244555566655
Q ss_pred cccchhhhCCCCCEEEecCCC
Q 001973 222 GDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~ 242 (988)
+.+.....+=+++|++...
T Consensus 97 --~~~~~~~g~iD~lVnnAg~ 115 (283)
T 3v8b_A 97 --RDLVLKFGHLDIVVANAGI 115 (283)
T ss_dssp --HHHHHHHSCCCEEEECCCC
T ss_pred --HHHHHHhCCCCEEEECCCC
Confidence 3444433344566665543
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.11 Score=59.19 Aligned_cols=89 Identities=21% Similarity=0.261 Sum_probs=62.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC---eEEEEe----CC----hh-HHHHHHh-------c-CCc-ccCCHHHHhccCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF---TVIGYD----VY----RP-TLTKFQN-------V-GGL-IANSPAEAAKDVG 204 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~---~V~v~d----r~----~~-~~~~l~~-------~-G~~-~~~s~~e~~~~aD 204 (988)
..||.|+|+|.+|.+++..|.+.|. +|+++| |+ .. ..+.+.. . +.. ...++.++++++|
T Consensus 186 ~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aD 265 (439)
T 2dvm_A 186 EITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDAD 265 (439)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCS
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhccCC
Confidence 4589999999999999999999997 799999 87 32 2111221 1 111 2456889999999
Q ss_pred EEEEEcCC--hHHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 205 VLVIMVTN--EAQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 205 vV~l~vp~--~~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
++|-++|. ....+. ....+.++.+|+|+++
T Consensus 266 VlInaT~~~~G~~~~e-------~v~~m~~~~iVfDLyn 297 (439)
T 2dvm_A 266 VLISFTRPGPGVIKPQ-------WIEKMNEDAIVFPLAN 297 (439)
T ss_dssp EEEECSCCCSSSSCHH-------HHTTSCTTCEEEECCS
T ss_pred EEEEcCCCccCCCChH-------HHHhcCCCCEEEECCC
Confidence 99999987 221122 2234567889999954
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.91 E-value=0.6 Score=48.41 Aligned_cols=83 Identities=11% Similarity=0.042 Sum_probs=54.2
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+++-|.| .|-+|.++|+.|++.|++|.+.+|++++.+++.+.- -..+.++..=+.+..+++.++ +.
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~v~~~~---~~ 70 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL----------GNAVIGIVADLAHHEDVDVAF---AA 70 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------GGGEEEEECCTTSHHHHHHHH---HH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------cCCceEEECCCCCHHHHHHHH---HH
Confidence 4677776 478999999999999999999999998877665420 011222222344556666665 34
Q ss_pred hhhhCCCCCEEEecCCC
Q 001973 226 AVSALSSGASIILSSTV 242 (988)
Q Consensus 226 i~~~l~~g~ivId~st~ 242 (988)
+.+...+=+++|++...
T Consensus 71 ~~~~~g~id~lvnnAg~ 87 (235)
T 3l6e_A 71 AVEWGGLPELVLHCAGT 87 (235)
T ss_dssp HHHHHCSCSEEEEECCC
T ss_pred HHHhcCCCcEEEECCCC
Confidence 44444444677776654
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=91.89 E-value=0.72 Score=48.53 Aligned_cols=83 Identities=16% Similarity=0.039 Sum_probs=52.8
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+. .. ....++-.=+.++..++.++ +
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~---------~~~~~~~~D~~d~~~v~~~~---~ 78 (263)
T 3ak4_A 12 GRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAG-LE---------NGGFAVEVDVTKRASVDAAM---Q 78 (263)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-CT---------TCCEEEECCTTCHHHHHHHH---H
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-Hh---------cCCeEEEEeCCCHHHHHHHH---H
Confidence 35676665 57899999999999999999999999887765442 10 02222222344555566555 3
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.+...+=+++|++..
T Consensus 79 ~~~~~~g~iD~lv~~Ag 95 (263)
T 3ak4_A 79 KAIDALGGFDLLCANAG 95 (263)
T ss_dssp HHHHHHTCCCEEEECCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 33333333467777654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.46 Score=50.70 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=35.3
Q ss_pred CeEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 147 TRVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 147 ~kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
-|+++| |.+-+|.++|+.|++.|.+|.+.+|+.+++++..+
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~ 71 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIA 71 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 378887 56679999999999999999999999998876654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.72 Score=49.65 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=56.0
Q ss_pred CCCeEEEEccc---hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 145 SVTRVGFIGLG---AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 145 ~~~kIgiIG~G---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+.+++-|.|.+ -+|.++|+.|++.|++|.+.+|+.+..+.+.+. .+......++-.=+.+..+++.++
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~~~Dv~d~~~v~~~~- 99 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPL--------AESLGVKLTVPCDVSDAESVDNMF- 99 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH--------HHHHTCCEEEECCTTCHHHHHHHH-
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH--------HHhcCCeEEEEcCCCCHHHHHHHH-
Confidence 34578888985 899999999999999999999997654443321 011112222223345666677666
Q ss_pred cccchhhhCCCCCEEEecCCCC
Q 001973 222 GDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~ 243 (988)
+.+.+...+=+++|++....
T Consensus 100 --~~~~~~~g~iD~lVnnAG~~ 119 (296)
T 3k31_A 100 --KVLAEEWGSLDFVVHAVAFS 119 (296)
T ss_dssp --HHHHHHHSCCSEEEECCCCC
T ss_pred --HHHHHHcCCCCEEEECCCcC
Confidence 44444444457788776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 988 | ||||
| d1yzya1 | 412 | c.146.1.1 (A:1-412) Hypothetical protein HI1011 {H | 2e-59 | |
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 5e-29 | |
| d1vpda1 | 133 | a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge | 1e-27 | |
| d1vpda1 | 133 | a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge | 3e-16 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 2e-27 | |
| d2cvza1 | 132 | a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge | 1e-26 | |
| d2cvza1 | 132 | a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge | 2e-14 | |
| d3cuma1 | 134 | a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge | 5e-26 | |
| d3cuma1 | 134 | a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge | 3e-13 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 7e-19 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 2e-17 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 1e-16 | |
| d1gvfa_ | 284 | c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase { | 8e-15 | |
| d1rvga_ | 305 | c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP | 1e-14 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 4e-14 | |
| d1dosa_ | 358 | c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP | 1e-13 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 4e-10 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 1e-08 | |
| d2pv7a2 | 152 | c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA { | 1e-07 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 5e-07 | |
| d2ahra2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 1e-04 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 4e-04 | |
| d1yqga2 | 152 | c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas | 0.002 | |
| d1wdka3 | 186 | c.2.1.6 (A:311-496) Fatty oxidation complex alpha | 0.003 | |
| d1f0ya2 | 192 | c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA | 0.003 |
| >d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011 {Haemophilus influenzae [TaxId: 727]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: YgbK-like superfamily: YgbK-like family: YgbK-like domain: Hypothetical protein HI1011 species: Haemophilus influenzae [TaxId: 727]
Score = 207 bits (527), Expect = 2e-59
Identities = 72/435 (16%), Positives = 143/435 (32%), Gaps = 49/435 (11%)
Query: 482 VLDDDPTGTQTV------HGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSL 535
V+ DD TG + +G+ + V + + K I SR+ +A
Sbjct: 3 VIADDFTGASDIASFLVENGLSTVQMNGVPT--QSLNSKVDAIVISLKSRSNPVNEAIEQ 60
Query: 536 ITDICRNLRTASNSVENTEYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQG 595
+ L+ + DST +G+ DA + L E D +I P
Sbjct: 61 SLRAYQWLKENG--CTQFYFKYCSTFDSTAKGNIGPVTDALLDELNE-DFTVITPALPVN 117
Query: 596 GRYTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNLREWVEEKTSGRIPASSVASISI 655
GR +VGD V ++ +NL ++ + G+ + A +
Sbjct: 118 GRTIFNGYLFVGD----VLLSESGMKNHPITPMVDANLMRLMDAQAKGKTGLVAYADV-- 171
Query: 656 QLLRKGGPDAVCERLCSLQKGSTC--IVNAASERDIAVFAAGMIQAELKGKSFLCRTAAS 713
G V E L+ +V+A + V A + +L +
Sbjct: 172 ----IKGASRVQECFAELKAQGYRYAVVDAVDNSQLEVLAEAVADFKL---VTGGSGLGA 224
Query: 714 FVSARIGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVS 773
+++AR+ K K +++ GS T KQVE+ ++ ++
Sbjct: 225 YMAARLSGGKKGTNAFTPTKGKT-----VVLSGSCSVMTNKQVEKYREKA----PHFQLD 275
Query: 774 VDKVAMKSLEERQEEIIRAAEMVDVFLQARKDTLLITSR---VLITGKTPSESLEINLKV 830
V++ + I + + V L + ++ + L + + + +
Sbjct: 276 VEQAI-----HNENYIEQLYQWVIANLDSEFAPMVYATVPPDALKAIQHQFGVDQASHAI 330
Query: 831 SSAMVEIVRRI-TTRPRYILAKGGITSSDIATKALEAKRAKVVGQALAGVPLWELGPESR 889
+ ++ ++ + GG TSS + + L + Q GVP ++
Sbjct: 331 ENTFAKLAAKLKQYGVTNFITAGGETSSIV-VQELGFTGFHIGKQIAPGVPWL----KAV 385
Query: 890 HPGVPYVVFPGNVGD 904
+ + GN G
Sbjct: 386 EEDIFLALKSGNFGK 400
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 111 bits (279), Expect = 5e-29
Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 2/159 (1%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
+VGFIGLG MG M+ +LL++ ++++ D + G A++ A+ V++
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 61
Query: 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267
M+ N + V G+ G + G +I S+++P E + K ++++DAP
Sbjct: 62 TMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLAS--REISDALKAKGVEMLDAP 119
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306
VSGG +A G L++M G + ++ A++ +
Sbjct: 120 VSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV 158
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 106 bits (266), Expect = 1e-27
Identities = 33/129 (25%), Positives = 66/129 (51%)
Query: 313 GAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHML 372
GAG+ K+ANQ++ ++IA+ +EA+ + G+N +++ I S + + + P ++
Sbjct: 3 GAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVM 62
Query: 373 DNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKV 432
D ++ P +D+ +KD+ L ++ ++ A A G G D +A+
Sbjct: 63 DRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACY 122
Query: 433 YETLSGVKV 441
YE L+ V+V
Sbjct: 123 YEKLAKVEV 131
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 74.3 bits (182), Expect = 3e-16
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKLH 60
+ N ++ +++ A EA++L + G++P ++Y I S + P ++ + K
Sbjct: 10 LANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPG 69
Query: 61 F-LNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119
F ++ I++L ALD + + LPL A + + + H NDD+ L +E + V
Sbjct: 70 FRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKV 129
Query: 120 NIT 122
+T
Sbjct: 130 EVT 132
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 106 bits (266), Expect = 2e-27
Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVL 206
++ FIGLG MG MAT+LL++ + + +D+ + + G A S +A + V+
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 61
Query: 207 VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266
+ M+ E + D G ++ ++ G ++ ST++P ++ + L ++DA
Sbjct: 62 ISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAA--RERGLAMLDA 119
Query: 267 PVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306
PVSGG A+ G LT M G E+L+ + A+ ++
Sbjct: 120 PVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIF 159
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 104 bits (259), Expect = 1e-26
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 313 GAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHM- 371
GAG VK N L V++ +A E + + G++ +I S G S EN +P
Sbjct: 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRV 61
Query: 372 LDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVK 431
L + AL + VKD+GI ++ P + +A +++ D ++
Sbjct: 62 LTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALR 121
Query: 432 VYETLSGVKV 441
+ E GV++
Sbjct: 122 LLERWGGVEI 131
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 69.0 bits (168), Expect = 2e-14
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYI--PNLLRGDAK 58
+N+ L V+L A+ E + V+ G+ ++I+ ++G S +N I L R K
Sbjct: 9 AINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPK 68
Query: 59 LHFLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLG 118
L +++LGIA+ + P PLL +A + + + D+ +++ E G
Sbjct: 69 TFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGG 128
Query: 119 VNI 121
V I
Sbjct: 129 VEI 131
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 102 bits (254), Expect = 5e-26
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
Query: 313 GAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHM- 371
GAG K+ N L V + AEAMA G GL +VL I+ S G +W E P
Sbjct: 3 GAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPG 62
Query: 372 ------LDNDYTPYSALDIFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQD 425
DY+ + KD+G+ + + ++A L+ G+ +D
Sbjct: 63 VMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERD 122
Query: 426 DAAVVKVYE 434
+ V K+++
Sbjct: 123 FSVVQKLFD 131
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 65.5 bits (159), Expect = 3e-13
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL- 59
+ N+ L V +I + EA++LGV G+ VL +I+ ++G +W + Y P +
Sbjct: 10 VCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPA 69
Query: 60 -------HFLNAFIQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKV 112
++LG+A + A+ A P+ ++A L L +A D + K+
Sbjct: 70 SRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKL 129
Query: 113 WE 114
++
Sbjct: 130 FD 131
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 82.2 bits (202), Expect = 7e-19
Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 14/161 (8%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
RVGFIG G + +A+ L V+ R T + + + E V++
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61
Query: 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267
VT + + + +SP V + + VDA
Sbjct: 62 SAVTPGVALGAARRA------GRHVRGIYVDINNISPETVRMASSLI----EKGGFVDAA 111
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVI 308
+ G V+R I + E L+ + V
Sbjct: 112 IMGSVRRKGADIRIIASGRDAEEFM----KLNRYGLNIEVR 148
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 78.9 bits (193), Expect = 2e-17
Identities = 30/177 (16%), Positives = 53/177 (29%), Gaps = 8/177 (4%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
VG +GLG MG +A ++ F V ++ +F + A +
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62
Query: 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQ------LERRLQFEGKDL 261
+ + +L A + + R Q E L
Sbjct: 63 AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122
Query: 262 KLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCG-AGSG 317
+ + +SGG + A G GT + ++ A + K + GSG
Sbjct: 123 RFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 76.1 bits (186), Expect = 1e-16
Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 7/160 (4%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
+V FIGLGAMG+ MA HL R T++ + L + G + + V
Sbjct: 2 KVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFG----SEAVPLERVAEARV 57
Query: 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267
I E + L G + +++ P +L RL K + +DAP
Sbjct: 58 IFTCLPTTREVYEVAE-ALYPYLREGTYWVDATSGEPEASRRLAERL--REKGVTYLDAP 114
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYV 307
VSGG A G LT+M G EE+++ L+ + ++V
Sbjct: 115 VSGGTSGAEAGTLTVMLGGPEEAVERVRPFLAYAKKVVHV 154
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Score = 73.9 bits (181), Expect = 8e-15
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFK 973
STK LL +A+ YAV AFN++N E ++A++ E RSP IL FK
Sbjct: 4 STKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFK 54
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Score = 74.0 bits (181), Expect = 1e-14
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 923 STKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFK 973
+ E+L A + Y VGAFNV NME ++AV+ AAEE+RSP IL + K
Sbjct: 4 TGLEILKKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMK 54
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 69.2 bits (168), Expect = 4e-14
Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 12/178 (6%)
Query: 141 AKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAA 200
A+++ + IGL MG + ++ F V ++ + F +
Sbjct: 1 AQAD----IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHS 56
Query: 201 KDVGVLVIM-----VTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ 255
+ V + + ++V V L G II + R L+
Sbjct: 57 LEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLK 116
Query: 256 FEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVIKGGCG 313
+G V + VSGG A G ++M G +E+ ++ ++ K+ + C
Sbjct: 117 DKGIL--FVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCD 171
|
| >d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]} Length = 358 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Escherichia coli [TaxId: 562]
Score = 70.9 bits (173), Expect = 1e-13
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 924 TKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQV 967
+++ A++ +A+ A N + + AV+ A + ++P I+Q
Sbjct: 17 VQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQF 60
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 57.3 bits (137), Expect = 4e-10
Identities = 21/160 (13%), Positives = 43/160 (26%), Gaps = 12/160 (7%)
Query: 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI 208
+ F+G G + L V G A + + + GV+ +
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61
Query: 209 MVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPV 268
+V + + +LG + + E + + +
Sbjct: 62 IVPDRYIKTVANHLNLGDAVLVHCSGFL------------SSEIFKKSGRASIHPNFSFS 109
Query: 269 SGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVI 308
S ++ G E L + +S K +VI
Sbjct: 110 SLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVI 149
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 54.6 bits (131), Expect = 1e-08
Identities = 17/127 (13%), Positives = 46/127 (36%), Gaps = 6/127 (4%)
Query: 182 LTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSST 241
L ++VG + + EA + +++ + + ++ A+ GA + + T
Sbjct: 121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACT 177
Query: 242 VSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSAL 301
+ +++ + L +DL + + G V +EE++ +
Sbjct: 178 IPTTKFAKIFKDL--GREDLN-ITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIA 234
Query: 302 SEKLYVI 308
K + +
Sbjct: 235 RGKAFKM 241
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Score = 49.9 bits (118), Expect = 1e-07
Identities = 12/160 (7%), Positives = 40/160 (25%), Gaps = 21/160 (13%)
Query: 148 RVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVL 206
++ +G G +G A +L S + + D + + + + +
Sbjct: 11 KIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETI 70
Query: 207 VIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDA 266
+ + + ++V ++++ L +
Sbjct: 71 ERLKPYL-----------------TENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMFG 113
Query: 267 PVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306
+ + + E + + K+Y
Sbjct: 114 ADIASMAKQV---VVRCDGRFPERYEWLLEQIQIWGAKIY 150
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 48.6 bits (114), Expect = 5e-07
Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 11/166 (6%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
++G +GLG +G +A L R +IG + T K + + ++
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKII 61
Query: 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267
+ T L S +I+ +++ +L +
Sbjct: 62 FLCTPIQLILPTLEKL----IPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGT 117
Query: 268 VSGGVKRASMGE-------LTIMAAGTEESLKSTGSVLSALSEKLY 306
+ G+ A LT E L SVL L K+Y
Sbjct: 118 AAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIY 163
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187
++G IG+G M + L ++ +I +
Sbjct: 2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAE 41
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 40.3 bits (93), Expect = 4e-04
Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 17/133 (12%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGV-- 205
+GLG G A +L +V+ +D+ + + Q+ G +IA P A
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL 62
Query: 206 ------------LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERR 253
++++V S+ S +S G IIL+ + G + +
Sbjct: 63 TSDIGLAVKDADVILIVVPAIHHASIAANIA---SYISEGQLIILNPGATGGALEFRKIL 119
Query: 254 LQFEGKDLKLVDA 266
+ ++ + +
Sbjct: 120 RENGAPEVTIGET 132
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Score = 38.0 bits (87), Expect = 0.002
Identities = 19/160 (11%), Positives = 54/160 (33%), Gaps = 10/160 (6%)
Query: 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLV 207
V F+G G M +A L++ I + K + + + + +
Sbjct: 2 NVYFLGGGNMAAAVAGGLVKQGGYRI--YIANRGAEKRERLEKELGVETSATLPE----- 54
Query: 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAP 267
+ +++ +V D+ A ++ S + V L R L + ++++
Sbjct: 55 -LHSDDVLILAVKPQDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNT 113
Query: 268 VSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYV 307
+ + A +E + ++ ++ +++
Sbjct: 114 PG--KIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWL 151
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Score = 37.6 bits (86), Expect = 0.003
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDV 177
V + +G G MG G+A ++ D+
Sbjct: 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDI 35
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 0.003
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDV 177
V V IG G MG G+A + TV+ D
Sbjct: 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQ 35
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 988 | |||
| d1yzya1 | 412 | Hypothetical protein HI1011 {Haemophilus influenza | 100.0 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.96 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.95 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.9 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.89 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.89 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.88 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.88 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.85 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.83 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.81 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.8 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.78 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.75 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.64 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.64 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.62 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.55 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.53 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 99.42 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.42 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.4 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.39 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 99.37 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.32 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.3 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.25 | |
| d1dosa_ | 358 | Fructose-bisphosphate aldolase (FBP aldolase) {Esc | 99.2 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.17 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.15 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.85 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.73 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.73 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.69 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.61 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.59 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.55 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.51 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.48 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.44 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 98.41 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.28 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.15 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.15 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.1 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 98.05 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.03 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.0 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.96 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.92 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.88 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.87 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.84 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.73 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.66 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.63 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.63 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.61 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.57 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.55 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.5 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.5 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.5 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.47 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.41 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.41 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.4 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.38 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.35 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.34 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.34 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.33 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.32 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 97.22 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.22 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.2 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.18 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.1 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.09 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.09 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.04 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.98 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.89 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.77 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.77 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.73 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 96.67 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 96.61 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 96.61 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.59 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.55 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.52 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 96.51 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.32 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.26 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.24 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.2 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 96.16 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.15 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.13 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.07 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.04 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.99 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.87 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.83 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 95.8 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 95.78 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.76 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.75 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 95.74 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.69 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 95.68 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 95.62 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 95.54 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.54 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.51 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.45 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.42 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.27 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.02 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.01 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 94.94 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 94.83 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.82 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 94.8 | |
| d1i36a1 | 112 | Conserved hypothetical protein MTH1747 {Archaeon M | 94.79 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 94.76 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.72 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 94.66 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 94.55 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 94.51 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 94.48 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.47 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.45 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 94.32 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.28 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 94.26 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.02 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 94.02 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 93.99 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 93.99 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.94 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 93.87 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.86 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 93.84 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.62 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 93.4 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 93.39 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.35 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 93.33 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 93.29 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 93.17 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 93.17 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 93.1 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 93.06 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 93.02 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 93.01 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 92.99 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.92 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.86 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 92.82 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 92.79 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 92.75 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 92.72 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.71 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 92.64 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 92.63 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 92.6 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 92.58 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 92.57 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 92.56 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 92.4 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 92.33 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 92.24 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 92.19 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 92.18 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.16 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 92.03 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 92.0 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 91.89 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 91.82 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 91.77 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 91.77 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 91.7 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 91.59 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 91.51 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.48 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 91.46 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 91.43 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 91.35 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 91.33 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 91.28 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 91.26 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 91.21 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 91.1 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 91.06 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 91.05 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 90.95 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.8 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 90.76 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 90.69 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 90.62 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 90.39 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 90.32 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 90.27 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 90.18 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 90.17 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.15 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 90.07 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 89.92 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 89.82 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 89.55 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 89.54 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 89.49 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 89.47 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 89.44 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 89.44 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 89.27 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 89.24 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 89.11 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 88.97 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 88.88 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 88.8 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 88.78 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 88.63 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 88.55 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 88.37 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 88.34 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 88.33 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 88.27 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 88.14 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 88.13 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 87.77 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 87.73 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 87.63 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 87.62 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 87.38 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 87.37 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 87.32 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 87.12 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 87.01 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 86.97 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 86.67 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 86.33 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 86.22 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 85.97 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 85.95 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 85.72 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 85.54 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 84.87 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 84.87 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 84.8 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 84.47 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 84.33 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 84.29 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 83.92 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 83.71 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 83.64 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 83.6 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 83.34 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 83.26 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 83.23 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 82.94 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 82.75 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 82.48 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 81.97 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 81.24 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 81.2 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 80.61 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 80.41 |
| >d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: YgbK-like superfamily: YgbK-like family: YgbK-like domain: Hypothetical protein HI1011 species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=2.6e-76 Score=675.22 Aligned_cols=399 Identities=17% Similarity=0.194 Sum_probs=342.6
Q ss_pred EEEecCCCCccccc------ccceeEeecChhhHHHhhccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHHhccccCCC
Q 001973 480 LIVLDDDPTGTQTV------HGIEVLTEWSVASLVEQFRKKPLCFFILTNSRALSSEKASSLITDICRNLRTASNSVENT 553 (988)
Q Consensus 480 ~~iiaDD~TGa~~~------~g~~~~~~~~~~~~~~~~~~~~dvvvi~T~SR~l~~~~A~~~v~~~~~~l~~~~~~~~~~ 553 (988)
|.|||||||||+++ +|+++.+.++.+. .....++|+++|+||||++++++|+++|++++++++..+++ ..
T Consensus 1 i~iIADDlTGA~dt~~~~~~~G~~t~~~~~~~~--~~~~~~~dvv~i~t~SR~l~~~eA~~~v~~~~~~l~~~~~~--~~ 76 (412)
T d1yzya1 1 LGVIADDFTGASDIASFLVENGLSTVQMNGVPT--QSLNSKVDAIVISLKSRSNPVNEAIEQSLRAYQWLKENGCT--QF 76 (412)
T ss_dssp CEEEESSHHHHHHHHHHHHTTTCCEEEEESCCS--SCCCSCCSEEEEECCCSSSCHHHHHHHHHHHHHHHHHTTCC--SE
T ss_pred CeEEecCchhHHHHHHHHHHCCCeEEEEcCCCc--ccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCCC--ee
Confidence 57999999999998 7999999888652 23456789999999999999999999999999999998866 34
Q ss_pred eEEEEeccCCCCCCCchhHHHHHHhhhCCCCEEEEeccccCCCeEEECcEEEEecCCceeecCCCccccCCCCCCCCCcH
Q 001973 554 EYTVVLRGDSTLRGHFPEEADAAVSVLGEMDAWIICPFFLQGGRYTIEDIHYVGDLDQLVPAGDTEFAKDASFGFKSSNL 633 (988)
Q Consensus 554 ~~~i~kkiDSTLRGnig~Ei~a~~~~~~~~~~~~v~PAfP~~GR~t~~G~~~v~g~~~~~pl~et~~a~Dp~~Pv~~s~l 633 (988)
++++|||||||||||||+|++++++++++ +.++||||||++||||++|+||||| +||++|+|++||+|||++|+|
T Consensus 77 ~~Kv~s~~DStlRGnig~Ei~a~~~~~~~-~~~~v~PA~P~~gR~t~~G~~~v~g----~pl~~t~~a~dP~tP~~~s~l 151 (412)
T d1yzya1 77 YFKYCSTFDSTAKGNIGPVTDALLDELNE-DFTVITPALPVNGRTIFNGYLFVGD----VLLSESGMKNHPITPMVDANL 151 (412)
T ss_dssp EEECCTTCCCCTTCTHHHHHHHHHHHHTC-CCEEECCCBGGGTEEEETTEEEETT----EEGGGSGGGGCSSSCCCCCBH
T ss_pred EEEEEecccCCCcCCcHHHHHHHHHhcCC-CeEEEecCcccCCeEEECCEEEECC----EEccCcccccCCCCCCCcchH
Confidence 55677789999999999999999999996 7999999999999999999999999 999999999999999999999
Q ss_pred HHHHHhHcCCCCCCCceeEEehHHHhccChhHHHHHHhccc--CCCeEEEecCChhHHHHHHHHHHHHHHcCCcEEEEcc
Q 001973 634 REWVEEKTSGRIPASSVASISIQLLRKGGPDAVCERLCSLQ--KGSTCIVNAASERDIAVFAAGMIQAELKGKSFLCRTA 711 (988)
Q Consensus 634 ~~~l~~q~~~~~~~~~v~~i~l~~v~~~~~~~~~~~l~~~~--~~~i~V~Da~t~~dL~~ia~a~~~~~~~~~~~l~vg~ 711 (988)
+++|++|++.+ |.++++.+++. +.+.+.+++.++. ..+++||||+|++||+.|++++ .+ ..+|+||
T Consensus 152 ~~ll~~qs~~~-----v~~i~~~~v~~-~~~~~~~~l~~~~~~~~~~vv~Da~t~~dL~~ia~a~-----~~-~~~~~Gs 219 (412)
T d1yzya1 152 MRLMDAQAKGK-----TGLVAYADVIK-GASRVQECFAELKAQGYRYAVVDAVDNSQLEVLAEAV-----AD-FKLVTGG 219 (412)
T ss_dssp HHHHHHHCSSC-----EEEECHHHHTT-CHHHHHHHHHHHHHTTCSEEEECBSSTHHHHHHHHHT-----TT-CSEEEES
T ss_pred HHHhhhhcCCc-----cccccHHHHhc-chhHHHHHHHHHhcCCCceEEEecCCHHHHHHHHHHh-----cC-CeEEEec
Confidence 99999999974 99999999998 6788888887653 4589999999999999999877 23 3478999
Q ss_pred hHHHHHHhcccccCCCCccccccccCCCceEEEEeccccccHHHHHHHHhhcCCcEEEEEEehhHHHhhchHhHHHHHHH
Q 001973 712 ASFVSARIGIVAKAPILPKDLGNKIESTGGLIVVGSYVPKTTKQVEELISQSGRFIRSVEVSVDKVAMKSLEERQEEIIR 791 (988)
Q Consensus 712 agl~~~L~~~~~~~~~~~~~~~~~~~~~~~L~v~GS~s~~T~~Qi~~l~~~~~~~~~~i~~~~~~ll~~~~~~~~~~~~~ 791 (988)
+|++.+|+..+......+. ...+..+|+|+||||+|++|++|++++.++. ..+++|++++++. +.++++
T Consensus 220 aGla~~l~~~~~~~~~~~~--~~~~~~~~~Lvv~GS~s~~T~~Ql~~~~~~~----~~~~l~~~~~~~~-----~~~~~~ 288 (412)
T d1yzya1 220 SGLGAYMAARLSGGKKGTN--AFTPTKGKTVVLSGSCSVMTNKQVEKYREKA----PHFQLDVEQAIHN-----ENYIEQ 288 (412)
T ss_dssp HHHHHHHHHHHHTSCCGGG--CCCCCSCCEEEEECCCSHHHHHHHHHHTTTS----CEEECCHHHHHHC-----TTHHHH
T ss_pred ccHHHHHHHhhcccccccc--ccCCCCCcEEEEEccCcHHHHHHHHHHHhcC----CeEEecHHHhcCC-----cHHHHH
Confidence 9999999765543221111 1234457999999999999999999998763 4578999999842 345677
Q ss_pred HHHHHHHHHhcCCcEEEEecCcccc---cCCccchHHHHHHHHHHHHHHHHHhhc-CcceeeeccccchHHHHHhhcccc
Q 001973 792 AAEMVDVFLQARKDTLLITSRVLIT---GKTPSESLEINLKVSSAMVEIVRRITT-RPRYILAKGGITSSDIATKALEAK 867 (988)
Q Consensus 792 ~~~~~~~~l~~~~~~vi~t~~~~~~---~~~~~~~~~~~~~i~~~l~~i~~~~~~-~~~~li~tGGdTs~~v~~~~Lg~~ 867 (988)
+.+++.+.+.+++.+++++++.... ........+.+++|+..|+++++++.+ ++++||++|||||.+++ ++||++
T Consensus 289 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~~~~lv~tGGdTa~av~-~~Lg~~ 367 (412)
T d1yzya1 289 LYQWVIANLDSEFAPMVYATVPPDALKAIQHQFGVDQASHAIENTFAKLAAKLKQYGVTNFITAGGETSSIVV-QELGFT 367 (412)
T ss_dssp HHHHHHTTTTSSSCCEEECCCCHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEESHHHHHHHH-HHHTCC
T ss_pred HHHHHHHHHhcCCCeEEEecCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccHHHHHHH-HHcCCC
Confidence 7788888889999999999875321 122334678899999999999999876 79999999999999995 899999
Q ss_pred ceEEecccccCCcEEEcCCCCCCCCCcEEecCCCCCChhHHHHHHHHh
Q 001973 868 RAKVVGQALAGVPLWELGPESRHPGVPYVVFPGNVGDNNAVANVVRSW 915 (988)
Q Consensus 868 ~~~~~~ei~pGvp~~~~~~~g~~~gl~ivtK~G~fG~~~~l~~~~~~l 915 (988)
++++++||+||+|+++.. + +|+++|||+|+||++|+|.++++++
T Consensus 368 ~l~~~~ei~pGvp~~~~~-~---~gl~ivtK~G~fG~~D~~~~a~~~~ 411 (412)
T d1yzya1 368 GFHIGKQIAPGVPWLKAV-E---EDIFLALKSGNFGKEDFFEYAQGMF 411 (412)
T ss_dssp EEEEEEEEETTEEEEEES-S---SSCEEEEECTTCSCTTHHHHHHHTT
T ss_pred eeeEcCcccCCceEEEec-C---CCeEEEEECCCCCChhHHHHHHHHh
Confidence 999999999999999975 2 5899999999999999999999875
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=5e-29 Score=247.59 Aligned_cols=160 Identities=26% Similarity=0.461 Sum_probs=154.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
|||||||+|+||.+||++|+++||+|++|||++++.+++.+.+...++++.|+++++|+||+|||++.++++++++.+++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
.+.+.+|++|||+||+.|.+++++++.+.+ ++++|+++|++|++..+..|++++++||+++.+++++++|+.++.+++
T Consensus 81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~--~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~~~~~i~ 158 (161)
T d1vpda2 81 IEGAKPGTVLIDMSSIAPLASREISDALKA--KGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV 158 (161)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHT--TTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEE
T ss_pred hhccCCCCEEEECCCCCHHHHHHHHHHHHH--cCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence 999999999999999999999999999987 689999999999999999999999999999999999999999999998
Q ss_pred EE
Q 001973 307 VI 308 (988)
Q Consensus 307 ~~ 308 (988)
|+
T Consensus 159 ~~ 160 (161)
T d1vpda2 159 HT 160 (161)
T ss_dssp EE
T ss_pred EC
Confidence 85
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=1.4e-27 Score=237.32 Aligned_cols=161 Identities=27% Similarity=0.504 Sum_probs=154.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|+||||||+|.||.+||++|.++||+|++|||++++.+.+...+...+.++.|++..+|+|++|||++.+++.++....+
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~ 80 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG 80 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTC
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999877778
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeE
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKL 305 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v 305 (988)
+.+.+.+|++|||+||+.|++++++++.+.+ .|++|+|+|++|+|..+..|++++++||+++.+++++++|+.+++++
T Consensus 81 ~~~~l~~g~iiid~st~~p~~~~~~~~~~~~--~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~il~~~~~~v 158 (162)
T d3cuma2 81 LLAHIAPGTLVLECSTIAPTSARKIHAAARE--RGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNI 158 (162)
T ss_dssp HHHHSCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEE
T ss_pred ccccCCCCCEEEECCCCCHHHHHHHHHHHHH--CCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHHHHHHcCcc
Confidence 8999999999999999999999999999988 68999999999999999999999999999999999999999999999
Q ss_pred EEE
Q 001973 306 YVI 308 (988)
Q Consensus 306 ~~~ 308 (988)
+|+
T Consensus 159 ~~~ 161 (162)
T d3cuma2 159 FHA 161 (162)
T ss_dssp EEE
T ss_pred EEC
Confidence 885
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.90 E-value=3.5e-24 Score=215.54 Aligned_cols=154 Identities=19% Similarity=0.272 Sum_probs=141.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc--------ccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL--------IANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~--------~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
.+|||||+|+||.+||++|+++||+|++|||++++++++.+.+.. ..+++.+++..+|++++++|+..++.+
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~ 82 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence 489999999999999999999999999999999999999887542 344566777889999999999999999
Q ss_pred HHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHH
Q 001973 219 VLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVL 298 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 298 (988)
+. +++.+.+.+|++|||+||+.|.+++++++.+.+ .+++|+|+|++|++..+..|+ ++|+||+++.+++++++|
T Consensus 83 v~---~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~--~g~~~ldapvsGg~~~A~~G~-~~~~gG~~~~~~~~~~il 156 (176)
T d2pgda2 83 FI---EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKD--KGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIF 156 (176)
T ss_dssp HH---HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHH
T ss_pred HH---HHHHhccccCcEEEecCcchhHHHHHHHHHHHh--cCCceeccccccCcccccCCc-EEEcCCCHHHHHHHHHHH
Confidence 88 688999999999999999999999999999987 689999999999999999998 899999999999999999
Q ss_pred HhcCCeEE
Q 001973 299 SALSEKLY 306 (988)
Q Consensus 299 ~~~g~~v~ 306 (988)
+.++.++.
T Consensus 157 ~~~~~kv~ 164 (176)
T d2pgda2 157 QGIAAKVG 164 (176)
T ss_dssp HHHSCBCT
T ss_pred HHHhcccC
Confidence 99999864
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.89 E-value=9.5e-24 Score=201.62 Aligned_cols=122 Identities=24% Similarity=0.388 Sum_probs=119.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhccccccccCCCCc-chHHHHHHhHHHHHHHHHhc
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIPNLLRGDAKL-HFLNAFIQNLGIALDMAKTL 79 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-f~l~l~~KDl~la~~~a~~~ 79 (988)
|+||+++++++.+++|++.+|+++|||+++++++|+.|+++|++++++.|++++++|.| |+++++.||++++.++|++.
T Consensus 10 l~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~KDl~l~~~~a~~~ 89 (133)
T d1vpda1 10 LANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGV 89 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccchhhhccCCCCchHHHHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhccccc
Q 001973 80 AFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNIT 122 (988)
Q Consensus 80 g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~~ 122 (988)
|+|+|+++.+.+.|+.+.++|+|++|+++++++|+++++.++.
T Consensus 90 ~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~~~~~~~~ 132 (133)
T d1vpda1 90 GAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKVEVT 132 (133)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHHHHTCCCC
T ss_pred CCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999999999999998764
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=1.3e-23 Score=207.08 Aligned_cols=153 Identities=29% Similarity=0.396 Sum_probs=137.8
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAV 227 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~ 227 (988)
||||||+|+||.+||++|.++||.+ +|||++++..++.+.+...... .+.+.++|++|+++|++.++..+. .++.
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~---~~l~ 76 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVP-LERVAEARVIFTCLPTTREVYEVA---EALY 76 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECC-GGGGGGCSEEEECCSSHHHHHHHH---HHHT
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccc-cccccceeEEEecccchhhhhhhh---cccc
Confidence 7999999999999999999999866 6899988888877765554444 456678999999999998888776 6888
Q ss_pred hhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEE
Q 001973 228 SALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYV 307 (988)
Q Consensus 228 ~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~ 307 (988)
+.+.+++++||+||+.|.+++++++.+.+ ++++|+|+||+|++..+..|++++|+||+++.+++++++|+ ++.+++|
T Consensus 77 ~~~~~~~~iid~sT~~p~~~~~~~~~~~~--~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L~-~~~~v~~ 153 (156)
T d2cvza2 77 PYLREGTYWVDATSGEPEASRRLAERLRE--KGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YAKKVVH 153 (156)
T ss_dssp TTCCTTEEEEECSCCCHHHHHHHHHHHHT--TTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGCT-TEEEEEE
T ss_pred ccccccccccccccCCHHHHHHHHHHHHH--cCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHHH-hcCcCEE
Confidence 99999999999999999999999999987 68999999999999999999999999999999999999995 8999998
Q ss_pred E
Q 001973 308 I 308 (988)
Q Consensus 308 ~ 308 (988)
+
T Consensus 154 ~ 154 (156)
T d2cvza2 154 V 154 (156)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=6.3e-23 Score=195.69 Aligned_cols=121 Identities=25% Similarity=0.328 Sum_probs=117.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhcccc-ccccCCCCc-chHHHHHHhHHHHHHHHHh
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIP-NLLRGDAKL-HFLNAFIQNLGIALDMAKT 78 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-~~~~~~~~~-f~l~l~~KDl~la~~~a~~ 78 (988)
|+||+++++++.+++|++.||+++|||+++++|+|+.|+++|++++++.| +|.+++|+| |+++++.||++++.++|++
T Consensus 9 l~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~KDl~l~~~~a~~ 88 (132)
T d2cvza1 9 AINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGIAMGVLDG 88 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHhhHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999887 689999999 9999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcccc
Q 001973 79 LAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGVNI 121 (988)
Q Consensus 79 ~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~~~ 121 (988)
.|+|+|+++.+++.|+.+.++|+|++|+++++++|++++|.++
T Consensus 89 ~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~~~g~~~ 131 (132)
T d2cvza1 89 EKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGGVEI 131 (132)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHHHTSCC
T ss_pred cCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999875
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.88 E-value=6.3e-23 Score=206.80 Aligned_cols=162 Identities=19% Similarity=0.272 Sum_probs=143.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc--------cCCH---HHHhccCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI--------ANSP---AEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~--------~~s~---~e~~~~aDvV~l~vp~~~~ 215 (988)
|||||||+|.||.+||++|+++||+|++|||++++.+++.+.+... ..+. ...+..++.++++++....
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 6999999999999999999999999999999999999998876532 2222 2345678999999999888
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTG 295 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~ 295 (988)
++.++ ..+...+.++++++|+||..|..++++++.+.. ++++|+++|+++++..+..|+ ++|+||+++.+++++
T Consensus 82 ~~~~~---~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~--~~~~~ldapv~g~~~~a~~g~-~~mvgG~~~~~~~v~ 155 (178)
T d1pgja2 82 TDSTI---EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEA--AGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIR 155 (178)
T ss_dssp HHHHH---HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHT--TTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHH
T ss_pred hhhhh---hhhhhhccccceecccCccchhHHHHHHHHHhh--cceeEecccccCCcchhcCCc-EEEeeCCHHHHHHHH
Confidence 88888 577888999999999999999999999999987 689999999999999999998 889999999999999
Q ss_pred HHHHhcCCeEE----EEeCCcchH
Q 001973 296 SVLSALSEKLY----VIKGGCGAG 315 (988)
Q Consensus 296 ~ll~~~g~~v~----~~~g~~g~a 315 (988)
++|+.++.++. | +|.+|++
T Consensus 156 pil~~~~~~~~~~~~~-~g~~G~G 178 (178)
T d1pgja2 156 PIVEAAAAKADDGRPC-VTMNGSG 178 (178)
T ss_dssp HHHHHHSCBCTTSCBS-CCCCCST
T ss_pred HHHHHHhccccCCCCc-cCCCCCC
Confidence 99999999876 6 5777764
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=1.8e-21 Score=186.12 Aligned_cols=115 Identities=26% Similarity=0.390 Sum_probs=110.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCchhhhcccc-------ccccCCCCc-chHHHHHHhHHHH
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAAGNSWIFKNYIP-------NLLRGDAKL-HFLNAFIQNLGIA 72 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~-f~l~l~~KDl~la 72 (988)
||||+++++++.+++|++.+|+++|||++.++++|+.|+++||+++.+.+ .+.+++|.| |+++++.||++++
T Consensus 10 l~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~KDl~l~ 89 (134)
T d3cuma1 10 VCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLA 89 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999987653 488899999 9999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHh
Q 001973 73 LDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWEN 115 (988)
Q Consensus 73 ~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~ 115 (988)
+++|++.|+|+|+++.+.+.|+.+.++|+|++|+++++++|++
T Consensus 90 ~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~ 132 (134)
T d3cuma1 90 QEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDP 132 (134)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCT
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999875
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.83 E-value=1.9e-20 Score=178.48 Aligned_cols=132 Identities=25% Similarity=0.452 Sum_probs=128.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHH
Q 001973 311 GCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMG 390 (988)
Q Consensus 311 ~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~ 390 (988)
++|+|+.+|+++|++.+.++.+++|++.++++.|+|++++++++..+++.|+.++++.|+++.++|.|+|+++.+.||++
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~KDl~ 80 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA 80 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccchhhhccCCCCchHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCcccc
Q 001973 391 IIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKVE 442 (988)
Q Consensus 391 ~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~~~ 442 (988)
++.+++++.|+|+|+++.+.+.|+.+.+.|+|+.|++++++++++++|+++.
T Consensus 81 l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~~~~~~~~ 132 (133)
T d1vpda1 81 NALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAKVEVT 132 (133)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHHHHTCCCC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999999999999999999999998764
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.81 E-value=2.8e-20 Score=182.08 Aligned_cols=148 Identities=20% Similarity=0.176 Sum_probs=123.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
|||||||+|+||++||++|.++||+|++||+++++...+...+...++++.|++++||+||+|||++...+.+. ..
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~----~~ 76 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAAR----RA 76 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHH----HH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHH----hh
Confidence 69999999999999999999999999999999888877777777778899999999999999999987655543 33
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEE
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLY 306 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 306 (988)
... .++++||+||..|.+.+++++.++. ..|+++|+++++..+..+...++.|++.+.++ .|..+|.++.
T Consensus 77 ~~~--~~~~~id~st~~p~~~~~l~~~~~~----~~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~----~l~~~g~~i~ 146 (152)
T d1i36a2 77 GRH--VRGIYVDINNISPETVRMASSLIEK----GGFVDAAIMGSVRRKGADIRIIASGRDAEEFM----KLNRYGLNIE 146 (152)
T ss_dssp HTT--CCSEEEECSCCCHHHHHHHHHHCSS----SEEEEEEECSCHHHHGGGCEEEEESTTHHHHH----GGGGGTCEEE
T ss_pred ccc--CCceeeccCcCCHHHHHHHHHHHhc----cCCCcccccCCcccccCCcEEEEECCCHHHHH----HHHHcCCeee
Confidence 333 3689999999999999999988753 46999999999998888886655555555444 3788999988
Q ss_pred EE
Q 001973 307 VI 308 (988)
Q Consensus 307 ~~ 308 (988)
++
T Consensus 147 ~~ 148 (152)
T d1i36a2 147 VR 148 (152)
T ss_dssp EC
T ss_pred Ec
Confidence 85
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=1.6e-19 Score=171.80 Aligned_cols=130 Identities=25% Similarity=0.374 Sum_probs=125.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccc-cccCCCCCCCchhhHHHHHHH
Q 001973 312 CGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVP-HMLDNDYTPYSALDIFVKDMG 390 (988)
Q Consensus 312 ~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-~~~~~~~~~~~~l~~~~kDl~ 390 (988)
+|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.|+.+..+.| .+..++|.++|+++.+.||++
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~KDl~ 80 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLG 80 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHhhHHH
Confidence 5899999999999999999999999999999999999999999999999999998887 588999999999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhCccc
Q 001973 391 IIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYETLSGVKV 441 (988)
Q Consensus 391 ~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~~~g~~~ 441 (988)
++.+++++.|+|+|+.+.+.++|+.+.+.|+|+.|++++++++++++|+++
T Consensus 81 l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~~~g~~~ 131 (132)
T d2cvza1 81 IAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGGVEI 131 (132)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHHHTSCC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999875
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.78 E-value=1.7e-18 Score=171.75 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=128.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc-ccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL-IANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~-~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|||||||+|.||+.||++|.++||+|++|||+++.++++.+.|.. ...+..++++++|+||+|+|.. .++.++ ++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~-~~~~vl---~~ 76 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQ-LILPTL---EK 76 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHH-HHHHHH---HH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHh-hhhhhh---hh
Confidence 699999999999999999999999999999999999998888753 3445567889999999999965 588888 68
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccC----CCeEEEE---eCCHHHHHHHHHHH
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASM----GELTIMA---AGTEESLKSTGSVL 298 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~----g~l~~~~---gg~~~~~~~~~~ll 298 (988)
+.+.++++++|+|+++..+.....+.+.... ..+.|++.+|...++..+.. +...+++ +++++.++.+++++
T Consensus 77 l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~-~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~ 155 (165)
T d2f1ka2 77 LIPHLSPTAIVTDVASVKTAIAEPASQLWSG-FIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVL 155 (165)
T ss_dssp HGGGSCTTCEEEECCSCCHHHHHHHHHHSTT-CEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred hhhhcccccceeeccccchHHHHHHHHhhcc-cccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 8899999999999999988887776655432 23567888888777766543 4434443 67899999999999
Q ss_pred HhcCCeEEE
Q 001973 299 SALSEKLYV 307 (988)
Q Consensus 299 ~~~g~~v~~ 307 (988)
+.+|.++|+
T Consensus 156 ~~lG~~v~~ 164 (165)
T d2f1ka2 156 EPLGVKIYL 164 (165)
T ss_dssp GGGTCEEEE
T ss_pred HHhCCEEEe
Confidence 999999875
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.75 E-value=2.6e-18 Score=163.83 Aligned_cols=125 Identities=27% Similarity=0.425 Sum_probs=118.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccc-------cccCCCCCCCchhh
Q 001973 311 GCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVP-------HMLDNDYTPYSALD 383 (988)
Q Consensus 311 ~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~~~l~ 383 (988)
+.|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.||.++.+.+ .+..++|.++|+++
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 80 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ 80 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchH
Confidence 57999999999999999999999999999999999999999999999999999876543 35678899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Q 001973 384 IFVKDMGIIARECLSQRVPLHISTIAHQLFLAGSAAGWGRQDDAAVVKVYET 435 (988)
Q Consensus 384 ~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~a~~~g~g~~d~~a~~~~~~~ 435 (988)
.+.||++++.+++++.|+|+|+++.+.++|+.+.+.|+|+.|+++++++|++
T Consensus 81 l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~ 132 (134)
T d3cuma1 81 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDP 132 (134)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999985
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.64 E-value=8.5e-16 Score=149.71 Aligned_cols=143 Identities=11% Similarity=0.104 Sum_probs=117.2
Q ss_pred CCCCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 143 SNSVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 143 ~~~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+..++||+||| +|.||..||++|.++||+|++|||++... ..+.++.+|++++++|... +..++
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~-------------~~~~~~~~~~v~~~~~~~~-~~~v~- 70 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV-------------AESILANADVVIVSVPINL-TLETI- 70 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG-------------HHHHHTTCSEEEECSCGGG-HHHHH-
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc-------------cchhhhhccccccccchhh-heeee-
Confidence 34557999999 99999999999999999999999987543 3456778999999999766 55555
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe-cCcccCCcccccCCCeEEEE-eCCHHHHHHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV-DAPVSGGVKRASMGELTIMA-AGTEESLKSTGSVLS 299 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l-dapv~g~~~~a~~g~l~~~~-gg~~~~~~~~~~ll~ 299 (988)
.++.+.++++++|+|++|+++...+.+.+.+. .+|+ ..|++|+......+...+++ +++.+.++++.++|+
T Consensus 71 --~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~-----~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ll~ 143 (152)
T d2pv7a2 71 --ERLKPYLTENMLLADLTSVKREPLAKMLEVHT-----GAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQ 143 (152)
T ss_dssp --HHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS-----SEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHH
T ss_pred --ecccccccCCceEEEecccCHHHHHHHHHHcc-----CCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHHHH
Confidence 57888999999999999999999888776432 3455 45888887777777766555 778899999999999
Q ss_pred hcCCeEEE
Q 001973 300 ALSEKLYV 307 (988)
Q Consensus 300 ~~g~~v~~ 307 (988)
.+|.+++.
T Consensus 144 ~~Ga~v~e 151 (152)
T d2pv7a2 144 IWGAKIYQ 151 (152)
T ss_dssp HTTCEEEE
T ss_pred HhCCEEEe
Confidence 99999874
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=2.2e-17 Score=161.29 Aligned_cols=148 Identities=14% Similarity=0.066 Sum_probs=115.4
Q ss_pred EEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhh
Q 001973 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVS 228 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~ 228 (988)
|||||+|+||++|+.+|.+.++.+.+|+|++++.+++.+.+...+.++.++++++|+||+|||+.. +.+++ +++
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~-i~~v~---~~l-- 75 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-IKTVA---NHL-- 75 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-HHHHH---TTT--
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchh-hhHHH---hhh--
Confidence 899999999999999997766666899999999999999887778889999999999999999854 77776 333
Q ss_pred hCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEE
Q 001973 229 ALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 229 ~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
..+++++|++|+..|....+ ... ..+++++.+|..+++..+..+.++++++||++.++.++++++.+|.+++++
T Consensus 76 -~~~~~ivi~~s~~~~~~~l~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~i 149 (153)
T d2i76a2 76 -NLGDAVLVHCSGFLSSEIFK---KSG--RASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVI 149 (153)
T ss_dssp -CCSSCCEEECCSSSCGGGGC---SSS--EEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEEC
T ss_pred -cccceeeeecccchhhhhhh---hhc--cccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEEe
Confidence 24789999999987754321 111 135788888888887777777888999999999999999999999999885
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.62 E-value=5.7e-15 Score=146.65 Aligned_cols=157 Identities=20% Similarity=0.220 Sum_probs=125.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHHHHhcCCc--ccCCHHHH-hccCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQNVGGL--IANSPAEA-AKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~G~~--~~~s~~e~-~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
+||+|||+|.||.+||++|.++|+ +|++||++++..+.+.+.|.. ..++..+. ...+|+|++|+|.. .+.+++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~-~~~~vl- 79 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIA- 79 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHH-
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCch-hhhhhh-
Confidence 479999999999999999999996 799999999999999988763 34454443 35799999999964 467777
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCccccc----CCCeEEEE---eCCHHHHHHH
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRAS----MGELTIMA---AGTEESLKST 294 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~----~g~l~~~~---gg~~~~~~~~ 294 (988)
+++.+.++++++++|.+++.....+.+.+.+.....+.|.+.++...|+..+. .|...+++ +.+++.++.+
T Consensus 80 --~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~v 157 (171)
T d2g5ca2 80 --KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLV 157 (171)
T ss_dssp --HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHH
T ss_pred --hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHHH
Confidence 57888999999999999999999888888777654466666666555665554 35555555 3578899999
Q ss_pred HHHHHhcCCeEEE
Q 001973 295 GSVLSALSEKLYV 307 (988)
Q Consensus 295 ~~ll~~~g~~v~~ 307 (988)
+++++.+|.+++.
T Consensus 158 ~~~~~~lG~~v~~ 170 (171)
T d2g5ca2 158 KRVWEDVGGVVEY 170 (171)
T ss_dssp HHHHHHTTCEEEE
T ss_pred HHHHHHcCCEEEe
Confidence 9999999999875
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.55 E-value=2.1e-14 Score=146.53 Aligned_cols=160 Identities=21% Similarity=0.150 Sum_probs=120.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC--------------------CcccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG--------------------GLIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G--------------------~~~~~s~~e~~~~aDvV 206 (988)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+++.. ...+++..++++++|++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence 6999999999999999999999999999999999999887542 23578899999999999
Q ss_pred EEEcCChH---------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc------CCCceEecCcccCC
Q 001973 207 VIMVTNEA---------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFE------GKDLKLVDAPVSGG 271 (988)
Q Consensus 207 ~l~vp~~~---------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~------~~g~~~ldapv~g~ 271 (988)
|+|||+|. .+..++.....+.....++++||..||+.|++++.+...+.+. +.++++..+|.+-.
T Consensus 81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~ 160 (202)
T d1mv8a2 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR 160 (202)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc
Confidence 99999862 2333431112344556789999999999999999887655321 24567777886554
Q ss_pred cccccC----CCeEEEEeC-CHHHHHHHHHHHHhcCCeEEE
Q 001973 272 VKRASM----GELTIMAAG-TEESLKSTGSVLSALSEKLYV 307 (988)
Q Consensus 272 ~~~a~~----g~l~~~~gg-~~~~~~~~~~ll~~~g~~v~~ 307 (988)
+..+.. .. .+++|+ +++..+.++.+++.+..+++.
T Consensus 161 ~G~a~~d~~~~~-~iViG~~~~~~~~~~~~ly~~i~~~ii~ 200 (202)
T d1mv8a2 161 ESTAIKDYDFPP-MTVIGELDKQTGDLLEEIYRELDAPIIR 200 (202)
T ss_dssp TTSHHHHHHSCS-CEEEEESSHHHHHHHHHHHTTSSSCEEE
T ss_pred ccchhhhhcCCC-eEEEEeCCHHHHHHHHHHHHhcCCCeEe
Confidence 433221 11 145554 678899999999999887764
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.53 E-value=5.2e-14 Score=136.66 Aligned_cols=142 Identities=17% Similarity=0.183 Sum_probs=105.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|||||||+|+||++|+++|.++||+|++|+|++++.+++.+. |+..+.++.++++.+|+||+||+ |+.+++++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl----- 74 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVL----- 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHH-----
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhHHHHh-----
Confidence 699999999999999999999999999999999999998654 89999999999999999999997 45677776
Q ss_pred hhhhCCCCCEEEecCCC-CHHHHHHHHHHHHhcCCCceEecC-cccCCcccccCCCeEEEEeC---CHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTV-SPGFVSQLERRLQFEGKDLKLVDA-PVSGGVKRASMGELTIMAAG---TEESLKSTGSVLSA 300 (988)
Q Consensus 226 i~~~l~~g~ivId~st~-~p~~~~~l~~~l~~~~~g~~~lda-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~ 300 (988)
+.+.+++++|+..+. .. ..+.+.+.. +.+++.+ |- .+.....+. +.+..+ +++..+.++++|+.
T Consensus 75 --~~l~~~~~iis~~agi~~---~~l~~~l~~---~~~ivr~mPN--~~~~v~~g~-~~~~~~~~~~~~~~~~v~~l~~~ 143 (152)
T d2ahra2 75 --KPLHFKQPIISMAAGISL---QRLATFVGQ---DLPLLRIMPN--MNAQILQSS-TALTGNALVSQELQARVRDLTDS 143 (152)
T ss_dssp --TTSCCCSCEEECCTTCCH---HHHHHHHCT---TSCEEEEECC--GGGGGTCEE-EEEEECTTCCHHHHHHHHHHHHT
T ss_pred --hhcccceeEecccccccH---HHHHhhhcc---cccchhhccc--hhhhcCccc-eEEEeCCCCCHHHHHHHHHHHHh
Confidence 345678888876543 43 334555532 3344432 21 122223333 334433 57899999999999
Q ss_pred cCCeE
Q 001973 301 LSEKL 305 (988)
Q Consensus 301 ~g~~v 305 (988)
+|+.+
T Consensus 144 ~G~~~ 148 (152)
T d2ahra2 144 FGSTF 148 (152)
T ss_dssp TEEEE
T ss_pred CCCEE
Confidence 99643
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=99.42 E-value=3.3e-14 Score=151.39 Aligned_cols=65 Identities=40% Similarity=0.517 Sum_probs=60.7
Q ss_pred ccccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHHhhh
Q 001973 920 RISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVTSSI 984 (988)
Q Consensus 920 ~lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~~~~ 984 (988)
||||||+||++|++++|||||||++|+|+++|+++|||++++|||||+++++.+|.|..+..++.
T Consensus 1 Mlv~~k~il~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~ 65 (305)
T d1rvga_ 1 MLVTGLEILKKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAV 65 (305)
T ss_dssp CBCCHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHCCeEEEEEEECCHHHHHHHHHHHHHHCCCEEEECCccHHhHccHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999998876655443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.42 E-value=3e-13 Score=131.24 Aligned_cols=146 Identities=16% Similarity=0.222 Sum_probs=103.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
|||||||+|+||++|+++|.++| ++|++|||++++.+.+.+. |+...++.++ +.++|+||+||+ |+++++++ +
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk-P~~~~~v~---~ 75 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK-PQDMEAAC---K 75 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC-HHHHHHHH---T
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC-HHHHHHhH---H
Confidence 69999999999999999999887 9999999999999998875 7777777665 568999999998 67788887 3
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEeC--CHHHHHHHHHHHHhcC
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAAG--TEESLKSTGSVLSALS 302 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g 302 (988)
++. ..++++|......+ ...+.+.+.. ..+++.+ +...|.....|...+..+. +++..+.++++|+.+|
T Consensus 76 ~l~---~~~~~viS~~ag~~--~~~l~~~l~~---~~~iir~-mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G 146 (152)
T d1yqga2 76 NIR---TNGALVLSVAAGLS--VGTLSRYLGG---TRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVG 146 (152)
T ss_dssp TCC---CTTCEEEECCTTCC--HHHHHHHTTS---CCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTE
T ss_pred HHh---hcccEEeecccCCC--HHHHHHHhCc---CcceEee-cccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 442 35788887655443 2345555532 2223322 2233344444443333332 4778899999999999
Q ss_pred CeEE
Q 001973 303 EKLY 306 (988)
Q Consensus 303 ~~v~ 306 (988)
+.++
T Consensus 147 ~~~~ 150 (152)
T d1yqga2 147 LTVW 150 (152)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.40 E-value=1.1e-13 Score=139.18 Aligned_cols=153 Identities=8% Similarity=0.044 Sum_probs=111.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC--------------CcccCCHHHHhccCcEEEEEcC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG--------------GLIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G--------------~~~~~s~~e~~~~aDvV~l~vp 211 (988)
|.||+|||+|+||+++|..|+++||+|++|+|+++.++.+++.+ +.+++++.++++++|+||++||
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP 86 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP 86 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC
T ss_pred eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc
Confidence 35899999999999999999999999999999999999988643 3457789999999999999999
Q ss_pred ChHHHHHHHccccchhhh-----CCCCCEEEecCCC-CHHHHHHHHHHHHhcCC--CceEecCcccCCcccccCCCeEEE
Q 001973 212 NEAQAESVLYGDLGAVSA-----LSSGASIILSSTV-SPGFVSQLERRLQFEGK--DLKLVDAPVSGGVKRASMGELTIM 283 (988)
Q Consensus 212 ~~~~~~~vl~~~~~i~~~-----l~~g~ivId~st~-~p~~~~~l~~~l~~~~~--g~~~ldapv~g~~~~a~~g~l~~~ 283 (988)
+.. ++.++ +.+.+. +.++..++.++.+ .+++...+.+.+.+... .+.++.+|-+......+..+..++
T Consensus 87 s~~-~~~~~---~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~pt~~vi 162 (189)
T d1n1ea2 87 TQF-LRGFF---EKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSI 162 (189)
T ss_dssp HHH-HHHHH---HHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEE
T ss_pred HHH-HHHHH---HHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCCcEEEE
Confidence 754 77776 344332 3456667777643 35555556666654311 233455554444444444566777
Q ss_pred EeCCHHHHHHHHHHHHhcC
Q 001973 284 AAGTEESLKSTGSVLSALS 302 (988)
Q Consensus 284 ~gg~~~~~~~~~~ll~~~g 302 (988)
++.+.+..+.++++|+.-.
T Consensus 163 As~~~~~a~~i~~lfst~~ 181 (189)
T d1n1ea2 163 ASADINVARRLQRIMSTGD 181 (189)
T ss_dssp ECSSHHHHHHHHHHHSCTT
T ss_pred EeCCHHHHHHHHHHhCCCC
Confidence 7888999999999998643
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.39 E-value=6.7e-14 Score=144.30 Aligned_cols=156 Identities=10% Similarity=0.052 Sum_probs=130.2
Q ss_pred CeEEEEccch--HHHHHHH------HHHhCCCeEEEEeCChhHH-HHHHhc-----------------------------
Q 001973 147 TRVGFIGLGA--MGFGMAT------HLLRSNFTVIGYDVYRPTL-TKFQNV----------------------------- 188 (988)
Q Consensus 147 ~kIgiIG~G~--mG~~lA~------~L~~~G~~V~v~dr~~~~~-~~l~~~----------------------------- 188 (988)
.+++++|.|. ||..++. +|++.|+.|++.|.+++++ +.+.+.
T Consensus 41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~ 120 (242)
T d2b0ja2 41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH 120 (242)
T ss_dssp CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence 3678898887 8888887 7899999999999998764 333221
Q ss_pred -------CCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCc
Q 001973 189 -------GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDL 261 (988)
Q Consensus 189 -------G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~ 261 (988)
|+++++|+.|+++++|+||+|||.+..+++++ +++.++++++++|+|+||++|....++.+.+.+ +++
T Consensus 121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi---~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~--kgi 195 (242)
T d2b0ja2 121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGR--EDL 195 (242)
T ss_dssp SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH---HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTC--TTS
T ss_pred cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH---HHHHhhCCCCcEEEecCCCcHHHHHHHHHhccc--CCC
Confidence 35567999999999999999999998889998 789999999999999999999999999998865 678
Q ss_pred eEecCcccCCcccccCCCeEEEEeCCHHHHHHHHHHHHhcCCeEEEE
Q 001973 262 KLVDAPVSGGVKRASMGELTIMAAGTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 262 ~~ldapv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
+|+..+.+++| ....+.+.++.+++++.++++.++|+.+|+++|++
T Consensus 196 ~vi~~hp~a~p-e~~g~~li~~~~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 196 NITSYHPGCVP-EMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp EEEECBCSSCT-TTCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred EEECCCccCcC-ccccceEEecCCCCHHHHHHHHHHHHHHCCCeEeC
Confidence 99876555554 44455666777789999999999999999998874
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=1.5e-13 Score=144.82 Aligned_cols=61 Identities=39% Similarity=0.484 Sum_probs=58.7
Q ss_pred cccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccCHHHHH
Q 001973 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQYITLVT 981 (988)
Q Consensus 921 lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~~~~~~ 981 (988)
|||||+||++|++++|||||||++|+|+++|+++|||++++|||||+++++++|+|.+.+.
T Consensus 2 Lvs~k~ll~~A~~~~yAV~AfNv~~~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~ 62 (284)
T d1gvfa_ 2 IISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIY 62 (284)
T ss_dssp BCCSHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHH
T ss_pred CCCHHHHHHHHHHCCcEEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCHhHHhhCCHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999987654
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.32 E-value=1.5e-12 Score=129.94 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=107.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeC--ChhHHHHHHhcC-------------CcccCCHHHHhccCcEEEEEcC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDV--YRPTLTKFQNVG-------------GLIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr--~~~~~~~l~~~G-------------~~~~~s~~e~~~~aDvV~l~vp 211 (988)
|||+|||+|+||+++|..|+++||+|++|.| +++.++.+++.+ ...+++..++++++|+|+++||
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence 6999999999999999999999999999988 455677777542 1246788899999999999999
Q ss_pred ChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHH--HHHHHHHHhcCC----CceEecCcccCCcccccCCCeEEEEe
Q 001973 212 NEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFV--SQLERRLQFEGK----DLKLVDAPVSGGVKRASMGELTIMAA 285 (988)
Q Consensus 212 ~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~--~~l~~~l~~~~~----g~~~ldapv~g~~~~a~~g~l~~~~g 285 (988)
.. .+++++ +++.+.+++..+++.+.+..+... ..+.+.+.+... ...++.+|-+......+..+..++++
T Consensus 81 s~-~~~~~~---~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vias 156 (180)
T d1txga2 81 TD-GVLPVM---SRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSS 156 (180)
T ss_dssp GG-GHHHHH---HHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEEC
T ss_pred hh-hhHHHH---HhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEEc
Confidence 74 488888 678888866555544333311111 112233322111 12345555444443334455677778
Q ss_pred CCHHHHHHHHHHHHhcCCeEEE
Q 001973 286 GTEESLKSTGSVLSALSEKLYV 307 (988)
Q Consensus 286 g~~~~~~~~~~ll~~~g~~v~~ 307 (988)
.+.+..+.++++|+.-..++|.
T Consensus 157 ~~~~~a~~i~~~f~~~~frvy~ 178 (180)
T d1txga2 157 PSESSANKMKEIFETEYFGVEV 178 (180)
T ss_dssp SCHHHHHHHHHHHCBTTEEEEE
T ss_pred CCHHHHHHHHHHHCCCCEEEEe
Confidence 8889999999999875555553
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=8.6e-12 Score=125.41 Aligned_cols=150 Identities=14% Similarity=0.089 Sum_probs=109.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------cC------------------CcccCCHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN-----------VG------------------GLIANSPA 197 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G------------------~~~~~s~~ 197 (988)
.||+|||+|.||..||..++.+||+|++||++++..+...+ .+ +..+++..
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~ 84 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 84 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence 59999999999999999999999999999999987654322 12 23567888
Q ss_pred HHhccCcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccc
Q 001973 198 EAAKDVGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRA 275 (988)
Q Consensus 198 e~~~~aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a 275 (988)
+++.+||+|+-|+|..-.++.-++ .++.+.++++.++...|+..+-+ +++..+. ++..|.||...|..-.
T Consensus 85 ~a~~~ad~ViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~HffnP~~~~~---- 156 (192)
T d1f0ya2 85 SVVHSTDLVVEAIVENLKVKNELF--KRLDKFAAEHTIFASNTSSLQIT--SIANATTRQDRFAGLHFFNPVPVMK---- 156 (192)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHH--HHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCGGGEEEEEECSSTTTCC----
T ss_pred hhhcccceehhhcccchhHHHHHH--HHHhhhcccCceeeccCcccccc--hhhhhccCHhHEEeeccccccCccc----
Confidence 999999999999999887766555 67777788888887766655433 2333322 2223566665442222
Q ss_pred cCCCeEEEEe---CCHHHHHHHHHHHHhcCCeEEEE
Q 001973 276 SMGELTIMAA---GTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 276 ~~g~l~~~~g---g~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
++-++. .+++.++.+..+++.+|+.++.+
T Consensus 157 ----lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v 188 (192)
T d1f0ya2 157 ----LVEVIKTPMTSQKTFESLVDFSKALGKHPVSC 188 (192)
T ss_dssp ----EEEEECCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----EEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 333333 47899999999999999988764
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.25 E-value=4.5e-11 Score=119.17 Aligned_cols=105 Identities=25% Similarity=0.372 Sum_probs=87.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCC---------------cccCCHHHHhccCcEEEEEcC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGG---------------LIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~---------------~~~~s~~e~~~~aDvV~l~vp 211 (988)
+||+|||+|+||+++|..|+++||+|++|||++++.+.+++.+. ..++++.|+++++|+||+++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~ 81 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 81 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEc
Confidence 69999999999999999999999999999999999999887542 236789999999999999999
Q ss_pred ChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 212 NEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 212 ~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
... ++.++ +++.+++.++++|+..++.... ...+.+.+..
T Consensus 82 ~~~-~~~~~---~~i~~~l~~~~~iv~~~g~~~~-~~~~~~~~~~ 121 (184)
T d1bg6a2 82 AIH-HASIA---ANIASYISEGQLIILNPGATGG-ALEFRKILRE 121 (184)
T ss_dssp GGG-HHHHH---HHHGGGCCTTCEEEESSCCSSH-HHHHHHHHHH
T ss_pred hhH-HHHHH---HHhhhccCCCCEEEEeCCCCcc-HHHHHHHHHH
Confidence 866 77777 6889999999998876665443 3445555554
|
| >d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=2.8e-12 Score=139.20 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=53.3
Q ss_pred cccHHHHHHHHHHCCceeeeeccCchhHHHHHHHHHHHcCCCEEEEeccchhcccC
Q 001973 921 ISSTKELLLNAEKGEYAVGAFNVYNMEGVEAVVAAAEEERSPAILQVRSTCFKVQY 976 (988)
Q Consensus 921 lv~~~~ll~~A~~~~yav~afn~~~~e~~~a~~~aAe~~~~Pvil~~~~~~~~~~~ 976 (988)
-.||++||++|++++|||||||++|+|+++|+++||||++||||||+++++.+|+|
T Consensus 14 ~~nlk~~L~~A~~~~yAV~AfNv~n~e~~~Aii~AAee~~sPvIlq~s~g~~~y~g 69 (358)
T d1dosa_ 14 GDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIA 69 (358)
T ss_dssp THHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEecccHHHHcC
Confidence 34789999999999999999999999999999999999999999999999999875
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.17 E-value=3.1e-11 Score=122.01 Aligned_cols=135 Identities=19% Similarity=0.268 Sum_probs=95.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC------------------CcccCCHHHHhccCcEEEE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG------------------GLIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G------------------~~~~~s~~e~~~~aDvV~l 208 (988)
|||+|||+|++|.++|..|+ .||+|++||.++++++.+++.- .....+......++|++++
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 69999999999999998886 5999999999999999887531 1234566677789999999
Q ss_pred EcCChHH----------HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCC
Q 001973 209 MVTNEAQ----------AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMG 278 (988)
Q Consensus 209 ~vp~~~~----------~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g 278 (988)
|+|++.. ++.+. +. .....++.+++..||+.|++++++.+.+.. .+++.+|.+-.+..+...
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~---~~-~~~~~~~~~iii~Stv~pgt~~~~~~~~~~----~~~~~~PE~i~~G~ai~d 151 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVI---KE-VLSVNSHATLIIKSTIPIGFITEMRQKFQT----DRIIFSPEFLRESKALYD 151 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHH---HH-HHHHCSSCEEEECSCCCTTHHHHHHHHTTC----SCEEECCCCCCTTSTTHH
T ss_pred cCCccccccCCCcceeEEeehh---hh-hhhcccceeEEeeeecCceeeeeeeeccch----hhhccchhhcchhhhHhh
Confidence 9999842 22222 22 223467889999999999999988776643 456666644333322210
Q ss_pred ---CeEEEEeCCHHH
Q 001973 279 ---ELTIMAAGTEES 290 (988)
Q Consensus 279 ---~l~~~~gg~~~~ 290 (988)
.-.+++|++.+.
T Consensus 152 ~~~p~riv~G~~~~~ 166 (196)
T d1dlja2 152 NLYPSRIIVSCEEND 166 (196)
T ss_dssp HHSCSCEEEECCTTS
T ss_pred ccCCCEEEEeCCHhh
Confidence 012566765543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.15 E-value=4.6e-11 Score=119.44 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=105.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----------C-------------CcccCCHHHHhcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----------G-------------GLIANSPAEAAKD 202 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------G-------------~~~~~s~~e~~~~ 202 (988)
.||+|||+|.||+.+|..++.+|++|++||++++..++..+. + +..+++. +.+.+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 83 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN 83 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence 589999999999999999999999999999999876653321 1 1233333 34789
Q ss_pred CcEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHH--hcCCCceEecCcccCCcccccCCCe
Q 001973 203 VGVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQ--FEGKDLKLVDAPVSGGVKRASMGEL 280 (988)
Q Consensus 203 aDvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~--~~~~g~~~ldapv~g~~~~a~~g~l 280 (988)
||+|+.|+|..-.++.-++ .++.+.++++.++...|+..+-+. +++.+. ++..|.||...|. .-.+
T Consensus 84 adlViEav~E~l~~K~~lf--~~l~~~~~~~~IiaSnTS~l~i~~--la~~~~~p~r~~g~Hf~nP~~--------~~~l 151 (186)
T d1wdka3 84 VDLVVEAVVENPKVKQAVL--AEVENHVREDAILASNTSTISISL--LAKALKRPENFVGMHFFNPVH--------MMPL 151 (186)
T ss_dssp CSEEEECCCSCHHHHHHHH--HHHHTTSCTTCEEEECCSSSCHHH--HGGGCSCGGGEEEEECCSSTT--------TCCE
T ss_pred cceeeeeecchHHHHHHHH--HHHHhhcCCCeeEEeccccccHHH--HHHhccCchheEeeccccCcc--------cCCe
Confidence 9999999999887776555 678888888998887766655432 333322 2222445543321 1123
Q ss_pred EEEEe---CCHHHHHHHHHHHHhcCCeEEEE
Q 001973 281 TIMAA---GTEESLKSTGSVLSALSEKLYVI 308 (988)
Q Consensus 281 ~~~~g---g~~~~~~~~~~ll~~~g~~v~~~ 308 (988)
+=++. .+++.++.+..+++.+|+.++++
T Consensus 152 VEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v 182 (186)
T d1wdka3 152 VEVIRGEKSSDLAVATTVAYAKKMGKNPIVV 182 (186)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 33333 47899999999999999998874
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=5.1e-10 Score=109.46 Aligned_cols=92 Identities=15% Similarity=0.184 Sum_probs=73.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCC-------cccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGG-------LIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~-------~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
|||+|||+|.||+.+|..|+++||+|++|+|++++.+.+...+. ....+..+....+|+||+++|... ++++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~-~~~~ 79 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQ-VSDA 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGG-HHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccc-hHHH
Confidence 69999999999999999999999999999999876554333221 123455677789999999999865 6777
Q ss_pred HccccchhhhCCCCCEEEecCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~ 242 (988)
+ +.+.+.+.++++|+.+.++
T Consensus 80 ~---~~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 80 V---KSLASTLPVTTPILLIHNG 99 (167)
T ss_dssp H---HHHHTTSCTTSCEEEECSS
T ss_pred H---HhhccccCcccEEeeccCc
Confidence 6 5777888888888887765
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.73 E-value=6e-09 Score=102.90 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=88.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|..+|+.+...|.+|++||+++.. ......+++++++++||+|++++|.....+.++. ++
T Consensus 42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~--~~ 113 (181)
T d1qp8a1 42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------GPWRFTNSLEEALREARAAVCALPLNKHTRGLVK--YQ 113 (181)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------SSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC--HH
T ss_pred CceEEEeccccccccceeeeeccccccccccccccc------cceeeeechhhhhhccchhhcccccccccccccc--cc
Confidence 368999999999999999999999999999998642 2344567899999999999999999887777764 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHhc
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQFE 257 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~ 257 (988)
.+..++++.++|+++....-....+.+.+.+.
T Consensus 114 ~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~ 145 (181)
T d1qp8a1 114 HLALMAEDAVFVNVGRAEVLDRDGVLRILKER 145 (181)
T ss_dssp HHTTSCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred eeeeccccceEEeccccccccchhhhhhcccC
Confidence 77889999999999988777777788888763
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.73 E-value=7.5e-09 Score=103.24 Aligned_cols=108 Identities=17% Similarity=0.148 Sum_probs=90.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|+.+|+.|...|.+|.+||+....- .....+....+++.++++.||+|++++|-....+.++. +.
T Consensus 49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~-~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~--~~ 125 (193)
T d1mx3a1 49 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN--DF 125 (193)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS--HH
T ss_pred CceEEEeccccccccceeeeeccccceeeccCccccc-chhhhccccccchhhccccCCEEEEeecccccchhhhh--HH
Confidence 4699999999999999999999999999999875432 22334677788999999999999999998877776663 45
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..++++.++|++|-+..-....+.+.+.+
T Consensus 126 ~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~ 156 (193)
T d1mx3a1 126 TVKQMRQGAFLVNTARGGLVDEKALAQALKE 156 (193)
T ss_dssp HHTTSCTTEEEEECSCTTSBCHHHHHHHHHH
T ss_pred HHhccCCCCeEEecCCceEEcHHHHHHHHHc
Confidence 6788999999999998887777788888876
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.69 E-value=7.8e-09 Score=102.98 Aligned_cols=109 Identities=11% Similarity=0.130 Sum_probs=94.1
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|+.+|+.+...|.+|.+||++..........+....+++.++++.||+|++++|-....+.++. ++
T Consensus 47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~--~~ 124 (191)
T d1gdha1 47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN--KA 124 (191)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBS--HH
T ss_pred ccceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheec--HH
Confidence 4699999999999999999999999999999876655555555667778999999999999999999887777774 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..++++.++|++|-...-....+.+.+.+
T Consensus 125 ~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~ 155 (191)
T d1gdha1 125 TIKSLPQGAIVVNTARGDLVDNELVVAALEA 155 (191)
T ss_dssp HHTTSCTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred HhhCcCCccEEEecCCccchhhHHHHHHHHc
Confidence 7888999999999998888777888888876
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.61 E-value=1.2e-08 Score=101.74 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=94.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|..+|+.|...|.+|.+||+...........+.....++.+.++.||+|++++|-....+.++. ++
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~--~~ 121 (188)
T d2naca1 44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIN--DE 121 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBS--HH
T ss_pred ccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhhH--HH
Confidence 4699999999999999999999999999999876655555566777889999999999999999999887777774 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..+++|.++|++|-+..-....+.+.+.+
T Consensus 122 ~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~ 152 (188)
T d2naca1 122 TLKLFKRGAYIVNTARGKLCDRDAVARALES 152 (188)
T ss_dssp HHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred HHHhCCCCCEEEecCchhhhhHHHHHHHHhC
Confidence 7788999999999998887777788888876
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.59 E-value=3.3e-08 Score=98.73 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=87.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
++|||||+|.+|+.+|+.|...|.+|.+||+....... ..+. ...++.++++.||+|++++|-....+.++. ++.
T Consensus 44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~~~-~~~~l~~~l~~sDii~~~~plt~~T~~li~--~~~ 118 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE--KKGY-YVDSLDDLYKQADVISLHVPDVPANVHMIN--DES 118 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--HTTC-BCSCHHHHHHHCSEEEECSCCCGGGTTCBS--HHH
T ss_pred CeEEEecccccchhHHHhHhhhcccccccCcccccccc--ccee-eeccccccccccccccccCCcccccccccc--HHH
Confidence 58999999999999999999999999999987654322 2333 457899999999999999998887777664 456
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+..++++.++|+.|-+..-....+.+.+.+
T Consensus 119 l~~mk~~a~lIN~sRG~ivde~aL~~aL~~ 148 (197)
T d1j4aa1 119 IAKMKQDVVIVNVSRGPLVDTDAVIRGLDS 148 (197)
T ss_dssp HHHSCTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred HhhhCCccEEEecCchhhhhhHHHHHHHhc
Confidence 788999999999998877777778888876
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.55 E-value=1.4e-08 Score=101.94 Aligned_cols=104 Identities=19% Similarity=0.146 Sum_probs=86.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
++|||||+|.+|+.+|+.|...|.+|++||+.+.... .... ...++.++++.||+|.+++|.....+.++. ++.
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~---~~~~-~~~~l~~l~~~~D~v~~~~plt~~T~~li~--~~~ 119 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD---HPDF-DYVSLEDLFKQSDVIDLHVPGIEQNTHIIN--EAA 119 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC---CTTC-EECCHHHHHHHCSEEEECCCCCGGGTTSBC--HHH
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhh---hcch-hHHHHHHHHHhcccceeeeccccccccccc--HHH
Confidence 5899999999999999999999999999998765321 1122 245899999999999999999888777764 567
Q ss_pred hhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 227 VSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 227 ~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+..++++.++|+++-+..-....+.+.+.+
T Consensus 120 l~~mk~~a~lIN~aRG~vvde~aL~~aL~~ 149 (199)
T d1dxya1 120 FNLMKPGAIVINTARPNLIDTQAMLSNLKS 149 (199)
T ss_dssp HHHSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred hhccCCceEEEecccHhhhhhHHHHHHHhc
Confidence 788999999999998877777788888876
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.51 E-value=1.9e-07 Score=92.71 Aligned_cols=176 Identities=13% Similarity=0.069 Sum_probs=92.8
Q ss_pred CeEEEE-ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcC-------CcccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 147 TRVGFI-GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVG-------GLIANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiI-G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------~~~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
|||+|| |+|.||++||+.|+++||+|++|+|++++++.+.++. .....+........+......+.......
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDT 80 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeeeccchH
Confidence 699999 8999999999999999999999999999988877641 11223444455566666666665443332
Q ss_pred HHcccc--chhhhCCCCCEEEecC-----CCCHHHHHHHHHHHHhcC--CCceEecCcccCCcccccCCCeEEEEeCCHH
Q 001973 219 VLYGDL--GAVSALSSGASIILSS-----TVSPGFVSQLERRLQFEG--KDLKLVDAPVSGGVKRASMGELTIMAAGTEE 289 (988)
Q Consensus 219 vl~~~~--~i~~~l~~g~ivId~s-----t~~p~~~~~l~~~l~~~~--~g~~~ldapv~g~~~~a~~g~l~~~~gg~~~ 289 (988)
...... .............+.. .............+.... ..+....++....+.. ........++.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~ 159 (212)
T d1jaya_ 81 ARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFANLDE-KFDWDVPVCGDDDE 159 (212)
T ss_dssp HHHTHHHHTTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSCEEECCTTCCHHHHHCTTC-CCCEEEEEEESCHH
T ss_pred HHHhhhhhccccccccccccccccccccccccchhhhhhhhhhhhhcccccceeecHHHhcCccc-ccCccceEEeCCHH
Confidence 221000 0000000000011000 111122223333332210 0111122232222222 22334455666766
Q ss_pred HHHHHH-HHHHhcCCeEEEEeCCcchHHHHHHHHHH
Q 001973 290 SLKSTG-SVLSALSEKLYVIKGGCGAGSGVKMANQL 324 (988)
Q Consensus 290 ~~~~~~-~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~ 324 (988)
....+. .+.+..+.+.++. |.+..+..+|....+
T Consensus 160 a~~~~~~~~~~~~g~~~~~~-G~l~~a~~~e~~~~l 194 (212)
T d1jaya_ 160 SKKVVMSLISEIDGLRPLDA-GPLSNSRLVESLTPL 194 (212)
T ss_dssp HHHHHHHHHHHSTTEEEEEE-ESGGGHHHHHTHHHH
T ss_pred HHHHHHHHHhhCCCeEEEEe-ChHHHHHHHHhHHHH
Confidence 666554 4556678888774 778877777644433
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.48 E-value=9.1e-08 Score=94.65 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=90.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|..+|+.+...|.+|.+||++...... ...+.. ..+.+|+++.||+|++++|-....+.++. ++
T Consensus 44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-~~~~~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin--~~ 119 (184)
T d1ygya1 44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARA-AQLGIE-LLSLDDLLARADFISVHLPKTPETAGLID--KE 119 (184)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHH-HHHTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBC--HH
T ss_pred ceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHH-hhcCce-eccHHHHHhhCCEEEEcCCCCchhhhhhh--HH
Confidence 469999999999999999999999999999987655433 233444 45899999999999999999888887774 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.+..++++.++|++|-+..-....+.+.+.+
T Consensus 120 ~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~ 150 (184)
T d1ygya1 120 ALAKTKPGVIIVNAARGGLVDEAALADAITG 150 (184)
T ss_dssp HHTTSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred HHhhhCCCceEEEecchhhhhhHHHHHHHhc
Confidence 7788999999999998887777888888876
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=3.8e-08 Score=97.89 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=88.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
.++|||||+|.+|..+|+.+...|.+|.+||++.... ........+++++++.||+|++++|-....+.++. ++
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~----~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~--~~ 117 (188)
T d1sc6a1 44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMG--AK 117 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBC--HH
T ss_pred ceEEEEeecccchhhhhhhcccccceEeeccccccch----hhhhhhhhhHHHHHhhccceeecccCCcchhhhcc--HH
Confidence 4699999999999999999999999999999875422 11334457899999999999999998887777764 56
Q ss_pred hhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 226 AVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.++.++++.++|+++-+..-....+.+.+.+
T Consensus 118 ~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~ 148 (188)
T d1sc6a1 118 EISLMKPGSLLINASRGTVVDIPALADALAS 148 (188)
T ss_dssp HHHHSCTTEEEEECSCSSSBCHHHHHHHHHT
T ss_pred HHhhCCCCCEEEEcCcHHhhhhHHHHHHHHc
Confidence 7888999999999998888777888888876
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.41 E-value=5.6e-07 Score=78.76 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=77.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCC--ccccccccccccCCCCCCCchhhHHHHHHH
Q 001973 313 GAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGS--SWMFENRVPHMLDNDYTPYSALDIFVKDMG 390 (988)
Q Consensus 313 g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~--s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~ 390 (988)
..|+..|++.|.+.+..+++++|+..+|++.|+|...+.+.+...... +..+ ..|+ +||.-.++.||+.
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~~~~~~--~~pG-------~G~GG~ClpKD~~ 72 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYY--MRPG-------FAFGGSCLPKDVR 72 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTTTSSTT--CSCC-------SCCCSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccccccccc--cCCc-------ccCCccccchhHH
Confidence 578999999999999999999999999999999999999988755321 2111 1121 3566678999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHH
Q 001973 391 IIARECLSQRVPLHISTIAHQLFLA 415 (988)
Q Consensus 391 ~~~~~a~~~gi~~pi~~a~~~~~~~ 415 (988)
.+...+++.|++.++++++.+..+.
T Consensus 73 al~~~a~~~~~~~~ll~~~~~~N~~ 97 (98)
T d1mv8a1 73 ALTYRASQLDVEHPMLGSLMRSNSN 97 (98)
T ss_dssp HHHHHHHHTTCCCTTGGGHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHhC
Confidence 9999999999999999999888764
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.28 E-value=1.4e-06 Score=85.07 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=74.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCC---------cccCCHHHHhccCcEEEEEcCChHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGG---------LIANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~---------~~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
.++|.|||+|.||..+|.+|+++||+|++|||+.++++.+.+..- .......+.+...|+++.++|.....
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~ 81 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA 81 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhhh
Confidence 368999999999999999999999999999999999999987522 11123445677889999999876533
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
.... .....+..+++.+...+. ...+.+....
T Consensus 82 ~~~~-------~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 113 (182)
T d1e5qa1 82 TVIK-------SAIRQKKHVVTTSYVSPA-MMELDQAAKD 113 (182)
T ss_dssp HHHH-------HHHHHTCEEECSSCCCHH-HHHTHHHHHH
T ss_pred HHHH-------HHHhhccceeecccCcHH-HHHHHHHhcc
Confidence 3221 223346778888877654 4455555544
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.15 E-value=1.6e-06 Score=83.21 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=59.4
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-CCc--ccCCHHHHhccCcEEEEEcCChH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-GGL--IANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G~~--~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
+..+|.|||+|.||..++.+|.+.|. ++++|+|+.++++.+.+. |.. ..++..+.+.++|+||.|++.+.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~ 96 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH 96 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCC
Confidence 34699999999999999999999997 699999999999887764 543 34577788899999999998764
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.10 E-value=3.8e-06 Score=78.12 Aligned_cols=89 Identities=15% Similarity=0.233 Sum_probs=65.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------cCCHHHH-hccCcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------ANSPAEA-AKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------~~s~~e~-~~~aDvV~l~vp~~~~~~~ 218 (988)
+++.|+|+|.+|..+|+.|.+.|++|+++|.++++++++.+.|... .+.+.++ +.++|.+|+++++......
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~ 80 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST 80 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence 3789999999999999999999999999999999999998876432 1223343 6789999999998764443
Q ss_pred HHccccchhhhCCCCCEEEe
Q 001973 219 VLYGDLGAVSALSSGASIIL 238 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId 238 (988)
+. .......+...+++-
T Consensus 81 ~~---~~~~~~~~~~~iiar 97 (134)
T d2hmva1 81 LT---TLLLKELDIPNIWVK 97 (134)
T ss_dssp HH---HHHHHHTTCSEEEEE
T ss_pred HH---HHHHHHcCCCcEEee
Confidence 33 233344444444443
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.05 E-value=2.1e-05 Score=68.48 Aligned_cols=92 Identities=12% Similarity=0.034 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHHH
Q 001973 314 AGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGIIA 393 (988)
Q Consensus 314 ~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~~ 393 (988)
.|+.+|++.|.+.++.+.+++|+..+|++.|+|...+.+.+......+. .... ...+|.-.++.||...++
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~~-------~~~~--pg~g~GG~ClpKD~~al~ 73 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGM-------HYNN--PSFGYGGYSLPKDTKQLL 73 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTCS-------SSCC--CCSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccCC-------cccc--CCCCcccccCcccHHHHH
Confidence 5899999999999999999999999999999999999987765442111 1111 123566779999999884
Q ss_pred HHHHhCCCCchHHHHHHHHHHHH
Q 001973 394 RECLSQRVPLHISTIAHQLFLAG 416 (988)
Q Consensus 394 ~~a~~~gi~~pi~~a~~~~~~~a 416 (988)
+.+.|++.++++++.+.....
T Consensus 74 --~~~~~~~~~ll~~~~~~N~~~ 94 (98)
T d1dlja1 74 --ANYNNIPQTLIEAIVSSNNVR 94 (98)
T ss_dssp --HHHTTSSCSHHHHHHHHHHHH
T ss_pred --HHhcCCCcHHHHHHHHHHHhh
Confidence 567799999999999988754
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.03 E-value=1.3e-05 Score=75.44 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=52.0
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHH----HHhc------CCcccCCHHHHhccCcEEEEEcC
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTK----FQNV------GGLIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~----l~~~------G~~~~~s~~e~~~~aDvV~l~vp 211 (988)
.++|||+|||+|.+|..+|..|+..| .+|.+||+++++.+. +... ......+++ .+++||+|+++..
T Consensus 3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag 81 (146)
T d1ez4a1 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAG 81 (146)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEecc
Confidence 44679999999999999999999988 589999999877643 2221 112344555 4689999999976
Q ss_pred ChH
Q 001973 212 NEA 214 (988)
Q Consensus 212 ~~~ 214 (988)
.+.
T Consensus 82 ~~~ 84 (146)
T d1ez4a1 82 APQ 84 (146)
T ss_dssp C--
T ss_pred ccc
Confidence 553
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.00 E-value=3.1e-05 Score=71.54 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=66.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcc----cCCHH---HH-hccCcEEEEEcCChHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLI----ANSPA---EA-AKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~----~~s~~---e~-~~~aDvV~l~vp~~~~~~ 217 (988)
|||-|+|+|.+|..+++.|.+.|++|++.|.++++++++.+. +..+ .++.. ++ ++++|.++.+++++..-.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~N~ 80 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNL 80 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHHHH
Confidence 699999999999999999999999999999999999998765 5433 22222 22 468999999888875322
Q ss_pred HHHccccchhhhCCCCCEEEecCC
Q 001973 218 SVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st 241 (988)
.. ......+.+..+|+-...
T Consensus 81 -~~---~~~~k~~~~~~iI~~~~~ 100 (132)
T d1lssa_ 81 -MS---SLLAKSYGINKTIARISE 100 (132)
T ss_dssp -HH---HHHHHHTTCCCEEEECSS
T ss_pred -HH---HHHHHHcCCceEEEEecC
Confidence 11 133455666677765444
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.96 E-value=1.6e-05 Score=75.06 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=54.6
Q ss_pred hcCCCCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc------CCcccCCHHHHhccCcEEEE
Q 001973 141 AKSNSVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV------GGLIANSPAEAAKDVGVLVI 208 (988)
Q Consensus 141 m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~------G~~~~~s~~e~~~~aDvV~l 208 (988)
|+++...||+|||+|.+|..+|..|+..|. ++.+||+++++++. +.+. .....++..+.+++||+|++
T Consensus 1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvi 80 (148)
T d1ldna1 1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVI 80 (148)
T ss_dssp CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEE
T ss_pred CCCCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEE
Confidence 445566799999999999999999999885 79999999887533 2221 22233344567889999999
Q ss_pred EcCCh
Q 001973 209 MVTNE 213 (988)
Q Consensus 209 ~vp~~ 213 (988)
+...+
T Consensus 81 tag~~ 85 (148)
T d1ldna1 81 CAGAN 85 (148)
T ss_dssp CCSCC
T ss_pred ecccc
Confidence 87654
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.92 E-value=1.6e-05 Score=75.26 Aligned_cols=91 Identities=22% Similarity=0.244 Sum_probs=75.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh-HHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP-TLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
++|+|||.|.-|.+-|.||...|.+|++--|... ..+...+.|..+ -+++|+++++|+|++.+|+..+.+ ++. +.
T Consensus 17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v-~~~~eA~~~aDiim~L~PD~~q~~-vy~--~~ 92 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-ADVKTAVAAADVVMILTPDEFQGR-LYK--EE 92 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-ECHHHHHHTCSEEEECSCHHHHHH-HHH--HH
T ss_pred CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccc-ccHHHHhhhcCeeeeecchHHHHH-HHH--Hh
Confidence 5899999999999999999999999998877654 456677778775 589999999999999999866544 442 47
Q ss_pred hhhhCCCCCEEEecCC
Q 001973 226 AVSALSSGASIILSST 241 (988)
Q Consensus 226 i~~~l~~g~ivId~st 241 (988)
+.+++++|+.+.-..+
T Consensus 93 I~p~lk~g~~L~FaHG 108 (182)
T d1np3a2 93 IEPNLKKGATLAFAHG 108 (182)
T ss_dssp TGGGCCTTCEEEESCC
T ss_pred hhhhcCCCcEEEEecc
Confidence 8999999998875443
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=4.2e-05 Score=73.47 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=77.4
Q ss_pred CeEEEEccchHHHH-HHHHHHhC-CCe-EEEEeCChhHHHHHHh-cCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGLGAMGFG-MATHLLRS-NFT-VIGYDVYRPTLTKFQN-VGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~G~mG~~-lA~~L~~~-G~~-V~v~dr~~~~~~~l~~-~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
+||||||+|.||.. ....+.+. +++ +.+||+++++.+.+.+ .+....++..++.++.|+|++|+|+....+.+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~-- 79 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS-- 79 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH--
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhcccccc--
Confidence 59999999999986 56666654 566 4578999999888764 478888999999999999999999987665554
Q ss_pred ccchhhhCCCC-CEEEec-CCCCHHHHHHHHHHHHh
Q 001973 223 DLGAVSALSSG-ASIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 223 ~~~i~~~l~~g-~ivId~-st~~p~~~~~l~~~l~~ 256 (988)
.. +..| +++++. -+..+...+++.+...+
T Consensus 80 --~a---l~~gk~V~~EKPla~~~~e~~~l~~~a~~ 110 (164)
T d1tlta1 80 --TL---LNAGVHVCVDKPLAENLRDAERLVELAAR 110 (164)
T ss_dssp --HH---HHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred --cc---ccccceeeccccccCCHHHHHHHHHHHHH
Confidence 22 2233 566664 35567888888877665
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=1.4e-05 Score=75.74 Aligned_cols=93 Identities=14% Similarity=0.049 Sum_probs=75.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.-++++|+|.|.+|..+|..|...|.+|++||++|-+.-+....|..+. +..+++..+|++++++.+... +. .
T Consensus 23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTGn~~v----I~--~ 95 (163)
T d1li4a1 23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTGCIDI----IL--G 95 (163)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCSCS----BC--H
T ss_pred cCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhhhccEEEecCCCccc----hh--H
Confidence 3469999999999999999999999999999999988766666677654 788999999999999887442 21 2
Q ss_pred chhhhCCCCCEEEecCCCCH
Q 001973 225 GAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p 244 (988)
+-.+.+++|.++.+.+...-
T Consensus 96 eh~~~MKdgaIL~N~Ghfd~ 115 (163)
T d1li4a1 96 RHFEQMKDDAIVCNIGHFDV 115 (163)
T ss_dssp HHHTTCCTTEEEEECSSSTT
T ss_pred HHHHhccCCeEEEEeccccc
Confidence 34567899999999876543
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.84 E-value=4.5e-05 Score=72.41 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=53.3
Q ss_pred CCCCCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHH----hc----C----CcccCCHHHHhccCcEEEEE
Q 001973 143 SNSVTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQ----NV----G----GLIANSPAEAAKDVGVLVIM 209 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~----G----~~~~~s~~e~~~~aDvV~l~ 209 (988)
+++++||+|||+|.+|..+|..|+..++ ++.++|+++++++... .. + ....++.+++++++|+|+++
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvit 83 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVT 83 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEEC
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEe
Confidence 3456899999999999999999988885 8999999987654332 11 1 12346677889999999998
Q ss_pred cC
Q 001973 210 VT 211 (988)
Q Consensus 210 vp 211 (988)
..
T Consensus 84 ag 85 (154)
T d1pzga1 84 AG 85 (154)
T ss_dssp CS
T ss_pred cc
Confidence 74
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.73 E-value=0.0001 Score=72.01 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=76.1
Q ss_pred CeEEEEccchHHHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhc-C----CcccCCHHHHhc--cCcEEEEEcCChHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS-NFTVI-GYDVYRPTLTKFQNV-G----GLIANSPAEAAK--DVGVLVIMVTNEAQAE 217 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~-G----~~~~~s~~e~~~--~aDvV~l~vp~~~~~~ 217 (988)
+||||||+|.||...+..|... +++|+ ++|+++++.+.+.+. + ....++++++++ +.|+|++|+|+....+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~ 81 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE 81 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence 5999999999999999999876 56766 679999998877653 3 346789999875 5799999999987665
Q ss_pred HHHccccchhhhCCCCC-EEEec-CCCCHHHHHHHHHHHHh
Q 001973 218 SVLYGDLGAVSALSSGA-SIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~-ivId~-st~~p~~~~~l~~~l~~ 256 (988)
... ..+..|. ++++. -+..+...+++.+...+
T Consensus 82 ~~~-------~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~ 115 (184)
T d1ydwa1 82 WAI-------KAAEKGKHILLEKPVAMNVTEFDKIVDACEA 115 (184)
T ss_dssp HHH-------HHHTTTCEEEECSSCSSSHHHHHHHHHHHHT
T ss_pred hhh-------hhhhccceeecccccccCHHHHHHHHHHHHh
Confidence 543 2233444 44443 24567888888887765
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.66 E-value=6.8e-05 Score=73.41 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=72.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCC------CeEEEEeCC-hhHHHHHHhcCCcc----cCCHHHHhccCcEEEEEcCCh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSN------FTVIGYDVY-RPTLTKFQNVGGLI----ANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G------~~V~v~dr~-~~~~~~l~~~G~~~----~~s~~e~~~~aDvV~l~vp~~ 213 (988)
.++||+|||.|.-|.+-|.||...| .+|++--|. ....++..+.|... .-+..|+++++|+|++.+|+.
T Consensus 43 g~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe 122 (226)
T d1qmga2 43 GIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDS 122 (226)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHH
T ss_pred CCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchH
Confidence 3468999999999999999999955 567665443 35567777788753 347889999999999999987
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
.+ .+++ +++.+++++|+++.-.-.
T Consensus 123 ~Q-~~vy---~~I~p~Lk~G~~L~FaHG 146 (226)
T d1qmga2 123 AQ-ADNY---EKVFSHMKPNSILGLSHG 146 (226)
T ss_dssp HH-HHHH---HHHHHHSCTTCEEEESSS
T ss_pred HH-HHHH---HHHHHhcCCCceeeecch
Confidence 64 4466 468999999999875443
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.63 E-value=2.6e-05 Score=75.47 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=70.2
Q ss_pred CCCeEEEEccchHHHHHHHHHHhC-CCe-EEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRS-NFT-VIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~-G~~-V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
+++||||||+|.||...+..|.+. +++ |.++|++++... ..+....++..+..++.|+|++|+|+....+.+
T Consensus 2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a--- 75 (170)
T d1f06a1 2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDIPEQ--- 75 (170)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHHHHH---
T ss_pred CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCcccHHHH---
Confidence 346999999999999999999875 466 456788876432 223445667777788999999999997654433
Q ss_pred ccchhhhCCCCCEEEecC---CCCHHHHHHHHHHHHh
Q 001973 223 DLGAVSALSSGASIILSS---TVSPGFVSQLERRLQF 256 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~s---t~~p~~~~~l~~~l~~ 256 (988)
.+.+..|.-+|.+. +..++..+++.+....
T Consensus 76 ----~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~ 108 (170)
T d1f06a1 76 ----APKFAQFACTVDTYDNHRDIPRHRQVMNEAATA 108 (170)
T ss_dssp ----HHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHH
T ss_pred ----HHHHHCCCcEEEecCccccCHHHHHHHHHHHHh
Confidence 34566787777553 2335555566554443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.63 E-value=5.7e-05 Score=70.70 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=50.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHH----hc------CCcc-cCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQ----NV------GGLI-ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~----~~------G~~~-~~s~~e~~~~aDvV~l~vp~ 212 (988)
|||+|||+|.+|.++|..|+..| .++.+||+++++.+... .. ..++ .++..++++++|+|+++...
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~ 79 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGL 79 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEec
Confidence 69999999999999999999988 58999999987654321 11 1222 23445678999999999643
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.61 E-value=0.0002 Score=69.72 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=75.4
Q ss_pred CCeEEEEccchHHHH-HHHHHHhCC--CeEE-EEeCChhHHHHHHhc-CC-cccCCHHHHhc--cCcEEEEEcCChHHHH
Q 001973 146 VTRVGFIGLGAMGFG-MATHLLRSN--FTVI-GYDVYRPTLTKFQNV-GG-LIANSPAEAAK--DVGVLVIMVTNEAQAE 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~-lA~~L~~~G--~~V~-v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~--~aDvV~l~vp~~~~~~ 217 (988)
++||||||+|.||.. ....+.+.+ ++|. ++|+++++.+.+.+. +. ...+|.+|+++ +.|+|++|+|+....+
T Consensus 3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~ 82 (181)
T d1zh8a1 3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP 82 (181)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccc
Confidence 469999999999987 577777644 4654 789999999887654 44 46789999886 4799999999877555
Q ss_pred HHHccccchhhhCCCC-CEEEec-CCCCHHHHHHHHHHHHh
Q 001973 218 SVLYGDLGAVSALSSG-ASIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g-~ivId~-st~~p~~~~~l~~~l~~ 256 (988)
.+. .++ ..| +++++. -+......+++.+...+
T Consensus 83 ~~~----~al---~~gk~V~~EKPl~~~~~e~~~l~~~~~~ 116 (181)
T d1zh8a1 83 FIE----KAL---RKGVHVICEKPISTDVETGKKVVELSEK 116 (181)
T ss_dssp HHH----HHH---HTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred ccc----ccc---ccchhhhcCCCCcCCHHHHHHHHHHHHH
Confidence 443 222 233 466655 35567888888887766
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.57 E-value=0.00016 Score=69.40 Aligned_cols=104 Identities=10% Similarity=0.061 Sum_probs=75.4
Q ss_pred CeEEEEccchHHHH-HHHHHHhC-CCeEEEEeCChhHHHHHHhc-CC-cccCCHHHHhc-cCcEEEEEcCChHHHHHHHc
Q 001973 147 TRVGFIGLGAMGFG-MATHLLRS-NFTVIGYDVYRPTLTKFQNV-GG-LIANSPAEAAK-DVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 147 ~kIgiIG~G~mG~~-lA~~L~~~-G~~V~v~dr~~~~~~~l~~~-G~-~~~~s~~e~~~-~aDvV~l~vp~~~~~~~vl~ 221 (988)
+||||||+|.||.. ....|.+. +.++.++|+++++.+.+.+. +. ...++.+++++ +.|+|++|+|+....+.+.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~- 80 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAA- 80 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHH-
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccccccccccc-
Confidence 59999999999976 56677665 45888999999999888764 44 35677788775 5799999999987666554
Q ss_pred cccchhhhCCCCCEEEec-CCCCHHHHHHHHHHHHh
Q 001973 222 GDLGAVSALSSGASIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~-st~~p~~~~~l~~~l~~ 256 (988)
..+.. ...++++. -+......+++.+...+
T Consensus 81 ---~al~~--gk~V~~EKP~~~~~~e~~~l~~~a~~ 111 (167)
T d1xeaa1 81 ---FFLHL--GIPTFVDKPLAASAQECENLYELAEK 111 (167)
T ss_dssp ---HHHHT--TCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred ---ccccc--ccccccCCCCcCCHHHHHHHHHHHHH
Confidence 22221 22466664 24567788888887765
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.55 E-value=0.00018 Score=67.00 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=49.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhc---------CCcccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNV---------GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~---------G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
|||+|||+|.+|..+|..|+..+ .++.++|+++++++..... .....++..+.+++||+|+++...
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 77 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV 77 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccc
Confidence 69999999999999999999887 4899999998776532211 112233345568899999999754
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.50 E-value=0.0001 Score=69.34 Aligned_cols=93 Identities=15% Similarity=0.055 Sum_probs=77.7
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.-+++.|+|.|..|..+|.+|...|-+|+++++||-++-+..-.|..+ .+..++++.+|++|+++.... ++. .
T Consensus 22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~----vI~--~ 94 (163)
T d1v8ba1 22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVD----VIK--L 94 (163)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSS----SBC--H
T ss_pred cCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCc----ccc--H
Confidence 346999999999999999999999999999999998877777778776 688999999999999998855 221 2
Q ss_pred chhhhCCCCCEEEecCCCCH
Q 001973 225 GAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p 244 (988)
+-...++.|.++.+.+...-
T Consensus 95 ~h~~~MKdgaIl~N~GHfd~ 114 (163)
T d1v8ba1 95 EHLLKMKNNAVVGNIGHFDD 114 (163)
T ss_dssp HHHTTCCTTCEEEECSSTTT
T ss_pred HHHHHhhCCeEEEeccccch
Confidence 34567889999999886543
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.50 E-value=0.00026 Score=65.98 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=49.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHH----hc------CC--cccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQ----NV------GG--LIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~------G~--~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
+||+|||+|.+|.++|..|+.++. ++.++|+++++.+... .. .. ..+++.++ ++++|+|+++...+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-~~~advvvitag~~ 80 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-TANSDVIVVTSGAP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-GTTCSEEEECCSCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH-hcCCCEEEEeeecc
Confidence 599999999999999999998875 8999999887654322 11 11 22455554 68999999998654
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.50 E-value=0.0002 Score=67.90 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=61.9
Q ss_pred CCCeEEEEccchHHHH-HHHHHHhCC-CeE-EEEeCChhH--HHHHHhcCCcccCC-HHHHh-----ccCcEEEEEcCCh
Q 001973 145 SVTRVGFIGLGAMGFG-MATHLLRSN-FTV-IGYDVYRPT--LTKFQNVGGLIANS-PAEAA-----KDVGVLVIMVTNE 213 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~-lA~~L~~~G-~~V-~v~dr~~~~--~~~l~~~G~~~~~s-~~e~~-----~~aDvV~l~vp~~ 213 (988)
+++||||||+|.+|.. +...|.... .++ .+.+|+++. .+...+.|.....+ .++.. .+.|+||+++|..
T Consensus 3 kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag 82 (157)
T d1nvmb1 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSAS 82 (157)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCch
Confidence 4579999999999986 556665544 354 445888653 34455667765544 33332 3689999999987
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
...+... ....+..|..+||.|+
T Consensus 83 ~h~~~~~-----~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 83 AHVQNEA-----LLRQAKPGIRLIDLTP 105 (157)
T ss_dssp HHHHHHH-----HHHHHCTTCEEEECST
T ss_pred hHHHhHH-----HHHHHHcCCEEEEccc
Confidence 6555432 2334578999999997
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.47 E-value=0.00016 Score=67.42 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=50.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHH----HHhc----C----CcccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTK----FQNV----G----GLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~----l~~~----G----~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
|||+|||+|.+|.++|..|+.+| .++.+||+++++++. +.+. . +....+. +.++++|+|+++...
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag~ 79 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL 79 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEeccc
Confidence 69999999999999999999888 479999999987543 3221 1 1123444 678999999998764
Q ss_pred h
Q 001973 213 E 213 (988)
Q Consensus 213 ~ 213 (988)
+
T Consensus 80 ~ 80 (142)
T d1ojua1 80 A 80 (142)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.41 E-value=0.00013 Score=70.14 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=72.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCC-----------------------------HH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANS-----------------------------PA 197 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s-----------------------------~~ 197 (988)
-||.|||.|..|..-++.....|-+|++||+++++.+++.+.+..+.+. +.
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~ 109 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL 109 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999887544321 22
Q ss_pred HHhccCcEEEEEcCChHHH-HHHHccccchhhhCCCCCEEEecCC
Q 001973 198 EAAKDVGVLVIMVTNEAQA-ESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 198 e~~~~aDvV~l~vp~~~~~-~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
+.+.++|+||.++--+-.- ..++ .++..+.+++|++|||.+-
T Consensus 110 ~~l~~aDlVI~talipG~~aP~li--t~~mv~~Mk~GSVIVDvai 152 (183)
T d1l7da1 110 KELVKTDIAITTALIPGKPAPVLI--TEEMVTKMKPGSVIIDLAV 152 (183)
T ss_dssp HHHTTCSEEEECCCCTTSCCCCCS--CHHHHTTSCTTCEEEETTG
T ss_pred HHHHhhhhheeeeecCCcccceee--hHHHHHhcCCCcEEEEEee
Confidence 4477899999887554311 1111 1456778999999999874
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.41 E-value=8.8e-05 Score=70.33 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=73.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCC---cc----cCCHHHHhccCcEEEEEcCChHHH-H
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGG---LI----ANSPAEAAKDVGVLVIMVTNEAQA-E 217 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~---~~----~~s~~e~~~~aDvV~l~vp~~~~~-~ 217 (988)
.-|+.|||.|..|..-++...+.|-+|+++|+++++.+++..... .. ...+++.++++|+||.++--+-.- .
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~aP 111 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAP 111 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCC
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcccC
Confidence 359999999999999999999999999999999999988876522 11 123567789999999998654311 1
Q ss_pred HHHccccchhhhCCCCCEEEecCCC
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.++ .++..+.+++|.+|||.+.-
T Consensus 112 ~lI--t~~mv~~Mk~GSVIVDvaid 134 (168)
T d1pjca1 112 ILV--PASLVEQMRTGSVIVDVAVD 134 (168)
T ss_dssp CCB--CHHHHTTSCTTCEEEETTCT
T ss_pred eee--cHHHHhhcCCCcEEEEeecC
Confidence 112 14567789999999999854
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.40 E-value=0.00022 Score=67.63 Aligned_cols=68 Identities=16% Similarity=0.315 Sum_probs=50.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc----CC--cccCCHHHHhccCcEEEEEcCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV----GG--LIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~----G~--~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
.+||+|||+|.+|..+|..|+..|. ++.+||+++++++. +... +. .......+.+++||+|+++...+
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg~~ 99 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVR 99 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCSCC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecCCc
Confidence 4699999999999999999999996 89999999877632 3321 11 11233345688999999986544
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.38 E-value=0.0003 Score=65.76 Aligned_cols=67 Identities=25% Similarity=0.364 Sum_probs=49.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHH----HHhc----C--CcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTK----FQNV----G--GLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~----l~~~----G--~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
+||+|||+|.+|..+|..|+..| .++.+||+++++.+. +.+. + .....+..+.+++||+|+++...+
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~ 80 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI 80 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecccc
Confidence 59999999999999999999887 489999999887643 2221 1 112223345578999999986643
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.35 E-value=0.0002 Score=67.98 Aligned_cols=68 Identities=15% Similarity=0.275 Sum_probs=51.0
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHH----HHHhcC----C---cccCCHHHHhccCcEEEEEcC
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLT----KFQNVG----G---LIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~----~l~~~G----~---~~~~s~~e~~~~aDvV~l~vp 211 (988)
++.||+|||+|.+|..+|..|...|+ ++.+||+++++++ +|.... . ....+. +.+++||+|+++..
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvitag 96 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIITAG 96 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEECCS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEecc
Confidence 45699999999999999999999985 8999999987654 344321 1 123344 45689999999876
Q ss_pred Ch
Q 001973 212 NE 213 (988)
Q Consensus 212 ~~ 213 (988)
.+
T Consensus 97 ~~ 98 (159)
T d2ldxa1 97 AR 98 (159)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=5.3e-05 Score=75.51 Aligned_cols=68 Identities=10% Similarity=0.204 Sum_probs=53.3
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc-------cCCHHHHhccCcEEEEEcCC
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~vp~ 212 (988)
.|+||.|+| .|.+|+.++..|.++||+|+++.|++++.......++.+ .+++.++++++|+||.++..
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence 457999999 699999999999999999999999998865554444432 23445667888888888754
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.34 E-value=0.00028 Score=71.02 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=74.6
Q ss_pred CCCeEEEEccchHHHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHhc-CC-----cccCCHHHHhc--cCcEEEEEcCCh
Q 001973 145 SVTRVGFIGLGAMGFG-MATHLLRS-NFTVI-GYDVYRPTLTKFQNV-GG-----LIANSPAEAAK--DVGVLVIMVTNE 213 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~-G~-----~~~~s~~e~~~--~aDvV~l~vp~~ 213 (988)
+.-||||||+|.||.. +...+... +.+|. ++|+++++.+.+.+. |+ ...+|..++++ +.|+|++|+|+.
T Consensus 32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~ 111 (221)
T d1h6da1 32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS 111 (221)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence 3459999999999974 56666654 56655 789999999887654 44 24678889886 579999999998
Q ss_pred HHHHHHHccccchhhhCCCC-CEEEec-CCCCHHHHHHHHHHHHh
Q 001973 214 AQAESVLYGDLGAVSALSSG-ASIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g-~ivId~-st~~p~~~~~l~~~l~~ 256 (988)
...+.++ . .+..| .++++. -+..+....++.+...+
T Consensus 112 ~H~~~~~----~---al~~gk~v~~EKPla~~~~e~~~l~~~a~~ 149 (221)
T d1h6da1 112 LHAEFAI----R---AFKAGKHVMCEKPMATSVADCQRMIDAAKA 149 (221)
T ss_dssp GHHHHHH----H---HHHTTCEEEECSSCCSSHHHHHHHHHHHHH
T ss_pred hhhhHHH----H---hhhcchhhhcCCCccCCHHHHHHHHHHHHh
Confidence 7655554 1 22234 455554 35678888888887765
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.33 E-value=0.00029 Score=65.68 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=62.3
Q ss_pred eEEEEcc-chHHHHHHHHHHhCCC--eEEEEeCChhHHHHHHhcC---------CcccCCHHHHhccCcEEEEEcCChH-
Q 001973 148 RVGFIGL-GAMGFGMATHLLRSNF--TVIGYDVYRPTLTKFQNVG---------GLIANSPAEAAKDVGVLVIMVTNEA- 214 (988)
Q Consensus 148 kIgiIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~G---------~~~~~s~~e~~~~aDvV~l~vp~~~- 214 (988)
||+|||+ |.+|+++|..|+..|. ++.++|+++.+.+.+--.. ....++..+.+++||+|+++...+.
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~ 81 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK 81 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence 8999995 9999999999999885 7999999876654432211 1124566788999999999866431
Q ss_pred --------------HHHHHHccccchhhhCCCCCEEEecCC
Q 001973 215 --------------QAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 215 --------------~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
.++++. +.+.++ .+..+++..|+
T Consensus 82 ~g~sR~~ll~~N~~i~~~i~---~~i~~~-~p~~iiivvtN 118 (144)
T d1mlda1 82 PGMTRDDLFNTNATIVATLT---AACAQH-CPDAMICIISN 118 (144)
T ss_dssp TTCCGGGGHHHHHHHHHHHH---HHHHHH-CTTSEEEECSS
T ss_pred CCCCcchHHHHHHHHHHHHH---HHHHhc-CCCeEEEEecC
Confidence 344454 455555 44555555544
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.32 E-value=0.00038 Score=64.82 Aligned_cols=67 Identities=18% Similarity=0.236 Sum_probs=45.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHH----HHHhcC-----CcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLT----KFQNVG-----GLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~----~l~~~G-----~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
+||+|||+|.+|..+|..|+.++. ++.+||+++++++ +|...- ....+...+.+++||+|+++...+
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~ 79 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN 79 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccc
Confidence 589999999999999999999885 8999999987642 233211 112233345678999999985543
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=97.22 E-value=0.00068 Score=65.14 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=50.1
Q ss_pred CCeEEEEccchHHHHHH--HHHHhC----CCeEEEEeCChhHHHHHHh--------cC----CcccCCHHHHhccCcEEE
Q 001973 146 VTRVGFIGLGAMGFGMA--THLLRS----NFTVIGYDVYRPTLTKFQN--------VG----GLIANSPAEAAKDVGVLV 207 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA--~~L~~~----G~~V~v~dr~~~~~~~l~~--------~G----~~~~~s~~e~~~~aDvV~ 207 (988)
.|||+|||+|.+|++++ ..|+.. +.++.+||+++++++.... .+ +..+++..|++++||+|+
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence 36999999999998754 334432 4699999999988764221 12 234678999999999999
Q ss_pred EEcCCh
Q 001973 208 IMVTNE 213 (988)
Q Consensus 208 l~vp~~ 213 (988)
++....
T Consensus 82 ~~~~~g 87 (171)
T d1obba1 82 NTAMVG 87 (171)
T ss_dssp ECCCTT
T ss_pred eecccc
Confidence 987544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.22 E-value=0.00082 Score=62.43 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=50.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhc----C---CcccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYRPTLTK----FQNV----G---GLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~----G---~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
.||+|||+|.+|..+|..|+..|. ++.++|+++++.+. +... + ....++. +.+++||+|+++...+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~ 80 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR 80 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence 489999999999999999999885 89999999977643 3331 1 1123444 5578999999987654
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.20 E-value=0.00033 Score=69.14 Aligned_cols=107 Identities=11% Similarity=0.042 Sum_probs=74.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHh-ccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAA-KDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~-~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|+|-|+|++|..+|+.|.+.|.+|+++|.+++++......|....+ ++++. .+||+++-|-......++
T Consensus 27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~-~~~~~~~~~DI~iPcA~~~~I~~~------ 99 (201)
T d1c1da1 27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVA-LEDVLSTPCDVFAPCAMGGVITTE------ 99 (201)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECC-GGGGGGCCCSEEEECSCSCCBCHH------
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccC-ccccccccceeeecccccccccHH------
Confidence 3689999999999999999999999999999999999998888877654 44444 489988877543322222
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
..+.++ -++|+...+. |-+.+...+.+.+ +|+.|+
T Consensus 100 -~a~~i~-ak~i~e~AN~-p~~~~~~~~~L~~--rgI~~i 134 (201)
T d1c1da1 100 -VARTLD-CSVVAGAANN-VIADEAASDILHA--RGILYA 134 (201)
T ss_dssp -HHHHCC-CSEECCSCTT-CBCSHHHHHHHHH--TTCEEC
T ss_pred -HHhhhh-hheeeccCCC-CcchhhHHHHhcc--cceEEE
Confidence 223332 3566655443 4444445556666 566665
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.18 E-value=0.00032 Score=60.50 Aligned_cols=66 Identities=26% Similarity=0.463 Sum_probs=49.4
Q ss_pred CCCCeEEEEccchHH-HHHHHHHHhCCCeEEEEeCC-hhHHHHHHhcCCcccC-CHHHHhccCcEEEEE
Q 001973 144 NSVTRVGFIGLGAMG-FGMATHLLRSNFTVIGYDVY-RPTLTKFQNVGGLIAN-SPAEAAKDVGVLVIM 209 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG-~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~G~~~~~-s~~e~~~~aDvV~l~ 209 (988)
...++|-|||.|-.| +++|..|.+.||+|+++|+. ....+.+.+.|+.+.. ...+-+.+.|+|+.+
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S 74 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVS 74 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEEC
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEEC
Confidence 446799999999999 77899999999999999986 4556778888876422 222334566666554
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.09 E-value=0.00079 Score=63.10 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=48.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHH----hc----CC--c-ccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQ----NV----GG--L-IANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~----G~--~-~~~s~~e~~~~aDvV~l~vp~ 212 (988)
+||+|||+|.+|+++|..|...+. ++.+||+++++.+... +. +. . ...+..+.++++|+|+++...
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~ 81 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGF 81 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEeccc
Confidence 599999999999999998888774 7999999987754432 11 11 1 123445667899999999764
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.09 E-value=0.00045 Score=58.58 Aligned_cols=63 Identities=19% Similarity=0.351 Sum_probs=48.9
Q ss_pred CeEEEEccchHHH-HHHHHHHhCCCeEEEEeCCh-hHHHHHHhcCCcccC-CHHHHhccCcEEEEE
Q 001973 147 TRVGFIGLGAMGF-GMATHLLRSNFTVIGYDVYR-PTLTKFQNVGGLIAN-SPAEAAKDVGVLVIM 209 (988)
Q Consensus 147 ~kIgiIG~G~mG~-~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~G~~~~~-s~~e~~~~aDvV~l~ 209 (988)
|||=|||.|-+|. ++|+.|.++|++|+++|+.. +..++|.+.|+++.. -..+-+.++|+|+.+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~S 67 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKT 67 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEEC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEe
Confidence 6999999999997 89999999999999999876 556789899987532 122334566766654
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.04 E-value=0.0013 Score=61.15 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=47.6
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCC--CeEEEEeCChhH--HH----HHHhc------CCcc---cCCHHHHhccCcEEEE
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSN--FTVIGYDVYRPT--LT----KFQNV------GGLI---ANSPAEAAKDVGVLVI 208 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G--~~V~v~dr~~~~--~~----~l~~~------G~~~---~~s~~e~~~~aDvV~l 208 (988)
|||+|||+ |.+|.++|..|+..| .++.++|++++. ++ ++... ..+. .++..+.+++||+|++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 69999995 999999999999998 489999998632 22 23321 1111 2334567889999999
Q ss_pred EcCC
Q 001973 209 MVTN 212 (988)
Q Consensus 209 ~vp~ 212 (988)
+...
T Consensus 81 tAG~ 84 (145)
T d1hyea1 81 TSGV 84 (145)
T ss_dssp CCSC
T ss_pred eccc
Confidence 8543
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.98 E-value=0.00059 Score=72.57 Aligned_cols=95 Identities=27% Similarity=0.340 Sum_probs=74.0
Q ss_pred CCCCCeEEEEccchHHHHHHHHHHhC-C-CeEEEEeCChhHHHHHHh----cCCcccCCHHHHhccCcEEEEEcCChHHH
Q 001973 143 SNSVTRVGFIGLGAMGFGMATHLLRS-N-FTVIGYDVYRPTLTKFQN----VGGLIANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~----~G~~~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
.....+++|||+|..+...+..|... . .+|.+|+|++++.+.+.+ .+...+.++.+++.+||+|++|+++..
T Consensus 122 ~~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~-- 199 (320)
T d1omoa_ 122 RKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRK-- 199 (320)
T ss_dssp CTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSS--
T ss_pred cCCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcc--
Confidence 34457899999999999999998763 3 479999999999876654 467777888999999999999998744
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCCHH
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVSPG 245 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~p~ 245 (988)
.++. ...+++|..|...++..|.
T Consensus 200 -P~~~-----~~~l~~G~hv~~iGs~~p~ 222 (320)
T d1omoa_ 200 -PVVK-----AEWVEEGTHINAIGADGPG 222 (320)
T ss_dssp -CCBC-----GGGCCTTCEEEECSCCSTT
T ss_pred -cccc-----hhhcCCCCeEeecCCcccc
Confidence 2221 2457889888887776653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.0055 Score=58.41 Aligned_cols=89 Identities=22% Similarity=0.240 Sum_probs=66.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcc-----cCCHHHHh--------ccCcEEEEEcC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLI-----ANSPAEAA--------KDVGVLVIMVT 211 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~-----~~s~~e~~--------~~aDvV~l~vp 211 (988)
..+|.|+|+|.+|...+..+...|. +|++.|+++++.+.+++.|+.. .+++.+.. ...|++|-|++
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G 106 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTG 106 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSC
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccC
Confidence 3589999999999999999999998 7999999999999998888753 23443332 25799999998
Q ss_pred ChHHHHHHHccccchhhhCCCCCEEEecCC
Q 001973 212 NEAQAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 212 ~~~~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
.+..++..+ ..++++..++..+.
T Consensus 107 ~~~~~~~a~-------~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 107 AEASIQAGI-------YATRSGGTLVLVGL 129 (171)
T ss_dssp CHHHHHHHH-------HHSCTTCEEEECSC
T ss_pred CchhHHHHH-------HHhcCCCEEEEEec
Confidence 877555443 44566666665554
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.77 E-value=0.0012 Score=62.24 Aligned_cols=95 Identities=12% Similarity=0.122 Sum_probs=60.6
Q ss_pred CCCCeEEEEcc-chHHHHHHHHHHhCCC-------eEEEE--eCChhHHHHHHhc----------CCcccCCHHHHhccC
Q 001973 144 NSVTRVGFIGL-GAMGFGMATHLLRSNF-------TVIGY--DVYRPTLTKFQNV----------GGLIANSPAEAAKDV 203 (988)
Q Consensus 144 ~~~~kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~--dr~~~~~~~l~~~----------G~~~~~s~~e~~~~a 203 (988)
+..|||+|||+ |.+|+.++..|+..++ ...++ +.+.++.+.+... +....++..++++++
T Consensus 2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 81 (154)
T d1y7ta1 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDA 81 (154)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccc
Confidence 45579999996 9999999999998653 13333 3444444433211 234567788899999
Q ss_pred cEEEEEcCChH---------------HHHHHHccccchhhhCCCCCEEEecCC
Q 001973 204 GVLVIMVTNEA---------------QAESVLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 204 DvV~l~vp~~~---------------~~~~vl~~~~~i~~~l~~g~ivId~st 241 (988)
|+|+++-..+. .++++. +.+.+..+++.+++..|+
T Consensus 82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~---~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQG---RALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHH---HHHHHHSCTTCEEEECSS
T ss_pred cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHH---HHHHHhCCCCcEEEEecC
Confidence 99999875331 233333 345555666666666654
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.77 E-value=0.00061 Score=72.57 Aligned_cols=97 Identities=22% Similarity=0.255 Sum_probs=71.7
Q ss_pred CCCCCeEEEEccchHHHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhc-----CC--cccCCHHHHhccCcEEEEEcCCh
Q 001973 143 SNSVTRVGFIGLGAMGFGMATHLLR-SN-FTVIGYDVYRPTLTKFQNV-----GG--LIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~-----G~--~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
++...+++|||+|..+...+..+.. .+ .+|.+|||++++.+++.+. |. ..+++++++++.||+|++|++++
T Consensus 125 ~~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~ 204 (340)
T d1x7da_ 125 RPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK 204 (340)
T ss_dssp CTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS
T ss_pred ccCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccC
Confidence 3445799999999999999888865 34 4799999999998877642 44 45899999999999999999764
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCHH
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSPG 245 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~ 245 (988)
. ...++. ...+++|..|.-.++..|+
T Consensus 205 s-~~Pv~~-----~~~l~pG~hI~aiGs~~p~ 230 (340)
T d1x7da_ 205 A-YATIIT-----PDMLEPGMHLNAVGGDCPG 230 (340)
T ss_dssp S-EEEEEC-----GGGCCTTCEEEECSCCBTT
T ss_pred C-CCcccc-----hhhcCCCCEEeecccchhh
Confidence 3 112221 2457788877776665553
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.73 E-value=0.00043 Score=59.41 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=31.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
.+||.|+|+|..|.++|+.|.+.|++|++||.+.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~ 38 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence 3589999999999999999999999999999754
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.002 Score=59.86 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=46.2
Q ss_pred CeEEEEc-cchHHHHHHHHHHh-C--CCeEEEEeCChhHHH---HHHhcCCc------ccCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIG-LGAMGFGMATHLLR-S--NFTVIGYDVYRPTLT---KFQNVGGL------IANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~-~--G~~V~v~dr~~~~~~---~l~~~G~~------~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
|||+||| .|.+|+.+|..|+. . +.++.++|+.+.... ++.+.... ..++..++++++|+|+++-..+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~ 80 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence 6999999 59999999998864 3 478999998753221 23332111 1233455788999999997543
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=96.61 E-value=0.0032 Score=63.72 Aligned_cols=109 Identities=18% Similarity=0.111 Sum_probs=71.6
Q ss_pred CCCCeEEEEccchHHH----HHHHHHHh--CCCeEE-EEeCChhHHHHHHhc-CC---cccCCHHHHhc--cCcEEEEEc
Q 001973 144 NSVTRVGFIGLGAMGF----GMATHLLR--SNFTVI-GYDVYRPTLTKFQNV-GG---LIANSPAEAAK--DVGVLVIMV 210 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~----~lA~~L~~--~G~~V~-v~dr~~~~~~~l~~~-G~---~~~~s~~e~~~--~aDvV~l~v 210 (988)
++.+||||||+|.+|. .....+.+ .+++|. ++|+++++.+.+.+. +. ...++++++++ +.|+|++|+
T Consensus 14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~t 93 (237)
T d2nvwa1 14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV 93 (237)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccC
Confidence 3457999999998554 34445554 356755 789999998876654 43 34579999885 578999999
Q ss_pred CChHHHHHHHccccchhhh----CCCCCEEEecC-CCCHHHHHHHHHHHHh
Q 001973 211 TNEAQAESVLYGDLGAVSA----LSSGASIILSS-TVSPGFVSQLERRLQF 256 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~----l~~g~ivId~s-t~~p~~~~~l~~~l~~ 256 (988)
|+....+.+. ..++. .....++++.- +.....++++.+...+
T Consensus 94 p~~~h~~~~~----~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~ 140 (237)
T d2nvwa1 94 KVPEHYEVVK----NILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQ 140 (237)
T ss_dssp CHHHHHHHHH----HHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCcchhhHHH----HHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhh
Confidence 9887666554 12221 12235677652 4456777777766544
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=96.61 E-value=0.0028 Score=60.31 Aligned_cols=68 Identities=15% Similarity=0.022 Sum_probs=48.9
Q ss_pred CCeEEEEccchHHHHHH--HHHHhC----CCeEEEEeCChhHHHHHHh--------cC----CcccCCHHHHhccCcEEE
Q 001973 146 VTRVGFIGLGAMGFGMA--THLLRS----NFTVIGYDVYRPTLTKFQN--------VG----GLIANSPAEAAKDVGVLV 207 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA--~~L~~~----G~~V~v~dr~~~~~~~l~~--------~G----~~~~~s~~e~~~~aDvV~ 207 (988)
..||+|||.|..|++.+ ..|... +.++.++|+++++++.... .+ ...+++..|++++||+|+
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 46999999999987643 333322 2389999999998763221 12 235778999999999999
Q ss_pred EEcCCh
Q 001973 208 IMVTNE 213 (988)
Q Consensus 208 l~vp~~ 213 (988)
++...+
T Consensus 83 itag~~ 88 (167)
T d1u8xx1 83 AHIRVG 88 (167)
T ss_dssp ECCCTT
T ss_pred ECCCcC
Confidence 998653
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.0022 Score=61.32 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=68.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc----CC-cccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV----GG-LIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----G~-~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
.++|.|+|+|-.+.+++..|.+.|.+|++++|++++.+.+.+. +. ...+........+|+||-|+|-...- +..
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~-~~~ 96 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG-DIP 96 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT-CCC
T ss_pred CCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCccc-CCC
Confidence 3589999999999999999999999999999999999888764 21 11222222245789999999876421 111
Q ss_pred ccccchhhhCCCCCEEEecCCCCHHH
Q 001973 221 YGDLGAVSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 221 ~~~~~i~~~l~~g~ivId~st~~p~~ 246 (988)
.--...+.++.+++|.--.+..|
T Consensus 97 ---~~~~~~~~~~~~v~D~vY~P~~T 119 (170)
T d1nyta1 97 ---AIPSSLIHPGIYCYDMFYQKGKT 119 (170)
T ss_dssp ---CCCGGGCCTTCEEEESCCCSSCC
T ss_pred ---CCcHHHhccCcEEEEeecCCCCC
Confidence 11133467888999987664433
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.55 E-value=0.00096 Score=67.73 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=35.0
Q ss_pred hcCCCCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 001973 141 AKSNSVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVY 178 (988)
Q Consensus 141 m~~~~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~ 178 (988)
|||+..+||.|||.|.+|.+.|..|+++|++|++++|+
T Consensus 1 ~~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 1 LMMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CCCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 46667789999999999999999999999999999986
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.52 E-value=0.014 Score=55.30 Aligned_cols=88 Identities=17% Similarity=0.115 Sum_probs=61.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc-------CCHHHH---h-----ccCcEEEEEc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA-------NSPAEA---A-----KDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~-------~s~~e~---~-----~~aDvV~l~v 210 (988)
..+|.|+|+|.+|...+..+...|.+|+++|+++++.+.+++.|+... .+..+. + ...|+||-|+
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~ 106 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCS 106 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECS
T ss_pred CCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecC
Confidence 358999999999999999999999999999999999999988876321 122211 1 2367777777
Q ss_pred CChHHHHHHHccccchhhhCCCCCEEEecC
Q 001973 211 TNEAQAESVLYGDLGAVSALSSGASIILSS 240 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~l~~g~ivId~s 240 (988)
..+..++..+ ..++++-.++..+
T Consensus 107 g~~~~~~~a~-------~~~~~~G~iv~~G 129 (170)
T d1e3ja2 107 GNEKCITIGI-------NITRTGGTLMLVG 129 (170)
T ss_dssp CCHHHHHHHH-------HHSCTTCEEEECS
T ss_pred CChHHHHHHH-------HHHhcCCceEEEe
Confidence 7665444433 3344554555444
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=96.51 E-value=0.0013 Score=62.41 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=50.8
Q ss_pred CeEEEEccchHHHHHHHHH-Hh-----CCCeEEEEeCChhHHHHHHhc-------C--CcccCCHHHHhccCcEEEEEcC
Q 001973 147 TRVGFIGLGAMGFGMATHL-LR-----SNFTVIGYDVYRPTLTKFQNV-------G--GLIANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L-~~-----~G~~V~v~dr~~~~~~~l~~~-------G--~~~~~s~~e~~~~aDvV~l~vp 211 (988)
|||+|||.|..|.+++... +. .+.++.++|+++++.+..... . ...+++..+++++||+|+++..
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 6999999999998887543 22 136899999999987653321 1 2356788899999999999986
Q ss_pred ChH
Q 001973 212 NEA 214 (988)
Q Consensus 212 ~~~ 214 (988)
.+.
T Consensus 81 ~~~ 83 (162)
T d1up7a1 81 PGG 83 (162)
T ss_dssp TTH
T ss_pred cCC
Confidence 553
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.32 E-value=0.0027 Score=60.51 Aligned_cols=65 Identities=20% Similarity=0.170 Sum_probs=51.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~ 212 (988)
.++|.|||+|-++.+++..|.+.|. +|++++|++++.+.+.+. +....++.. ..++|+||-|+|-
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpi 83 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI 83 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheecccc
Confidence 3589999999999999999999996 799999999999888753 433322222 2478999988873
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.26 E-value=0.00093 Score=62.22 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=56.4
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCC---eEEEEeCChhHHHHHHhcC--CcccCCHHHHhccCcEEEEEcCChHHHHHH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNF---TVIGYDVYRPTLTKFQNVG--GLIANSPAEAAKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~G--~~~~~s~~e~~~~aDvV~l~vp~~~~~~~v 219 (988)
.|||||||+ |+.|..+.+.|.+++| ++.....+...-+.+...+ ....+...+...++|++|+|+|.....+.+
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~ 81 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHA 81 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhhhc
Confidence 479999987 9999999999987665 5655533222111111000 111222234467899999999976644433
Q ss_pred HccccchhhhCCCCCEEEecCCCC
Q 001973 220 LYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 220 l~~~~~i~~~l~~g~ivId~st~~ 243 (988)
- ....+|..|||.|+..
T Consensus 82 ~-------~~~~~g~~VID~Ss~f 98 (144)
T d2hjsa1 82 E-------RARAAGCSVIDLSGAL 98 (144)
T ss_dssp H-------HHHHTTCEEEETTCTT
T ss_pred c-------ccccCCceEEeechhh
Confidence 2 2234789999998853
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.24 E-value=0.00067 Score=65.23 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=66.2
Q ss_pred CCCCCeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHH
Q 001973 143 SNSVTRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAES 218 (988)
Q Consensus 143 ~~~~~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~ 218 (988)
++..+||||||+|.||...+..|.+.. ..+.+++....+ ...........+.+|+++ +.|+|++|+|+....+.
T Consensus 4 ~~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~~ 81 (172)
T d1lc0a1 4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDY 81 (172)
T ss_dssp CCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHH
T ss_pred CCCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhcccccccccc
Confidence 445679999999999999999887643 234444432221 111111223457888876 56899999999876554
Q ss_pred HHccccchhhhCCCCCEEEec-CCCCHHHHHHHHHHHHh
Q 001973 219 VLYGDLGAVSALSSGASIILS-STVSPGFVSQLERRLQF 256 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~-st~~p~~~~~l~~~l~~ 256 (988)
+. ..++. ...++++. -+..+..++++.+...+
T Consensus 82 ~~----~al~~--gk~V~~EKP~a~~~~e~~~l~~~a~~ 114 (172)
T d1lc0a1 82 IR----QFLQA--GKHVLVEYPMTLSFAAAQELWELAAQ 114 (172)
T ss_dssp HH----HHHHT--TCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred cc----ccccc--chhhhcCCCccccHHHHHHHHHHHHH
Confidence 43 22221 22466664 24568888888877665
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.20 E-value=0.0047 Score=57.95 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=49.6
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCC-------eEEEEeCChh--HHHHHH----hc------CCcccCCHHHHhccCc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNF-------TVIGYDVYRP--TLTKFQ----NV------GGLIANSPAEAAKDVG 204 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~l~----~~------G~~~~~s~~e~~~~aD 204 (988)
..|||+|||+ |.+|..+|..|+..+. ++..+|.+.. +.+.+. .. .....++..++++++|
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 81 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence 3569999995 9999999999986541 5778887653 333332 11 1234678889999999
Q ss_pred EEEEEcCCh
Q 001973 205 VLVIMVTNE 213 (988)
Q Consensus 205 vV~l~vp~~ 213 (988)
+|+++-..+
T Consensus 82 vVVitag~~ 90 (154)
T d5mdha1 82 VAILVGSMP 90 (154)
T ss_dssp EEEECCSCC
T ss_pred EEEEecccC
Confidence 999987654
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.16 E-value=0.0035 Score=64.99 Aligned_cols=97 Identities=21% Similarity=0.149 Sum_probs=66.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHh---cCCCccccccccccccCCCCCCCchhhHHH--
Q 001973 313 GAGSGVKMANQLLAGVHIASAAEAMAFGAR-LGLNTRVLFNIITD---SGGSSWMFENRVPHMLDNDYTPYSALDIFV-- 386 (988)
Q Consensus 313 g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~-~Gid~~~~~~~l~~---~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~-- 386 (988)
|+|+.+||++|.....++++++|++.+.++ .|.+.+++.+++.. +...|+.++.....+...+-...+-++...
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~~~~~~ld~I~d~ 80 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDS 80 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCcCcchhhhhcc
Confidence 789999999999999999999999999987 58998888888764 445666655332222211111111111100
Q ss_pred ----HHHHHHHHHHHhCCCCchHHHHH
Q 001973 387 ----KDMGIIARECLSQRVPLHISTIA 409 (988)
Q Consensus 387 ----kDl~~~~~~a~~~gi~~pi~~a~ 409 (988)
-.-.+....|-++|+|+|++.++
T Consensus 81 a~~kGTG~Wt~~~Al~lgvp~p~I~~A 107 (297)
T d2pgda1 81 AGQKGTGKWTAISALEYGVPVTLIGEA 107 (297)
T ss_dssp CCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred ccCCCchHHHHHHHHHcCCCchHHHHH
Confidence 11358899999999999988665
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0041 Score=57.66 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=54.4
Q ss_pred CeEEEEcc-chHHHHHHHHHHhC-CC---eEEEEeCChhHHHHHHhc--CCcc-cCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRS-NF---TVIGYDVYRPTLTKFQNV--GGLI-ANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~-G~---~V~v~dr~~~~~~~l~~~--G~~~-~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
+||||||+ |++|+.+.+.|.++ .| +++.+..+...-...... .... .....+...++|++|+|+|+..+.+.
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~~ 81 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEI 81 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHHH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHHh
Confidence 58999997 99999999877765 33 566665443321111111 1111 12223456899999999998764433
Q ss_pred HHccccchhhhCCCCCEEEecCCC
Q 001973 219 VLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
+- .+.. ...+.+|||.|+.
T Consensus 82 ~~----~~~~-~g~~~~VID~Ss~ 100 (146)
T d1t4ba1 82 YP----KLRE-SGWQGYWIDAASS 100 (146)
T ss_dssp HH----HHHH-TTCCCEEEECSST
T ss_pred hH----HHHh-cCCCeecccCCcc
Confidence 32 2221 2234689999974
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.13 E-value=0.0055 Score=59.05 Aligned_cols=45 Identities=18% Similarity=0.071 Sum_probs=40.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~ 191 (988)
.+|.|+|+|.+|......+...|. +|++.|+++++.+.+++.|+.
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 75 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD 75 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS
T ss_pred CEEEEECCCccchhheecccccccccccccccccccccccccccce
Confidence 589999999999999999999997 799999999999988888763
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.07 E-value=0.011 Score=56.47 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=28.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCC-CeEEEE-eCChhH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN-FTVIGY-DVYRPT 181 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~-dr~~~~ 181 (988)
.||||.|+|++|..+++.+.++. .+|... |+++..
T Consensus 2 IKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~ 38 (178)
T d1b7go1 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNY 38 (178)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSH
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcH
Confidence 59999999999999999999865 576665 565543
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.04 E-value=0.0074 Score=54.59 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=52.7
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEE-EeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIG-YDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
|||+|+|+ |.||+.++..+.+.||++.. +|++. .+.+..+|+|+=.... ..+.+.+ +
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~-----------------~~~~~~~DVvIDFS~p-~~~~~~l---~ 59 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG-----------------VEELDSPDVVIDFSSP-EALPKTV---D 59 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE-----------------EEECSCCSEEEECSCG-GGHHHHH---H
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc-----------------HHHhccCCEEEEecCH-HHHHHHH---H
Confidence 59999996 99999999999999998664 45432 1234578988866544 4444444 2
Q ss_pred chhhhCCCCCEEEecCCCCHH-HHHHHHH
Q 001973 225 GAVSALSSGASIILSSTVSPG-FVSQLER 252 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~-~~~~l~~ 252 (988)
.. +..+..+|..||+-.+ ..+.+.+
T Consensus 60 ~~---~~~~~p~ViGTTG~~~~~~~~i~~ 85 (128)
T d1vm6a3 60 LC---KKYRAGLVLGTTALKEEHLQMLRE 85 (128)
T ss_dssp HH---HHHTCEEEECCCSCCHHHHHHHHH
T ss_pred HH---HhcCCCEEEEcCCCCHHHHHHHHH
Confidence 22 2335566777776544 4444443
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.99 E-value=0.0091 Score=54.99 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=45.5
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCC--eEEEEeCCh--hHHH----HHHhc-----CCcc-cCCHHHHhccCcEEEEEcC
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNF--TVIGYDVYR--PTLT----KFQNV-----GGLI-ANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~--~V~v~dr~~--~~~~----~l~~~-----G~~~-~~s~~e~~~~aDvV~l~vp 211 (988)
.||+||| .|.+|..+|..|...|. ++.+||++. +..+ ++... ..++ ..+. +.+++||+|+++..
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG 79 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG 79 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence 3899999 69999999999999985 799999753 2222 33321 1122 3344 44689999999865
Q ss_pred C
Q 001973 212 N 212 (988)
Q Consensus 212 ~ 212 (988)
.
T Consensus 80 ~ 80 (142)
T d1o6za1 80 I 80 (142)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.87 E-value=0.0034 Score=60.04 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=50.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc----C-CcccCCHHHHhccCcEEEEEcCChH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV----G-GLIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----G-~~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
.++|.|+|+|.++.+++..|.+.+-+|++++|+.++++.+.+. + .............+|++|-|+|...
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~ 91 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGL 91 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--
T ss_pred CCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeecccccc
Confidence 3589999999999999999999888999999999999887653 1 1111111112456788888887643
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.83 E-value=0.0085 Score=57.30 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=54.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCccc-----CCHHHHh------ccCcEEEEEcCChH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIA-----NSPAEAA------KDVGVLVIMVTNEA 214 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~-----~s~~e~~------~~aDvV~l~vp~~~ 214 (988)
.+|.|+|+|.+|...+..+...|. +|++.|+++++.+..++.|+..+ .++.+.+ ...|++|-|+..+.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~ 108 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSE 108 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCTT
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCCHH
Confidence 489999999999999999998996 79999999999999888886421 2222222 12677777777665
Q ss_pred HHHHH
Q 001973 215 QAESV 219 (988)
Q Consensus 215 ~~~~v 219 (988)
.++..
T Consensus 109 ~~~~a 113 (174)
T d1jqba2 109 TLSQA 113 (174)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=95.80 E-value=0.029 Score=53.42 Aligned_cols=103 Identities=11% Similarity=0.061 Sum_probs=66.4
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCC---C----eEEEEeCChh--HHHHHH----hc------CCcccCCHHHHhccCc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSN---F----TVIGYDVYRP--TLTKFQ----NV------GGLIANSPAEAAKDVG 204 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G---~----~V~v~dr~~~--~~~~l~----~~------G~~~~~s~~e~~~~aD 204 (988)
+..||.|+|+ |.+|..++..|+... . .+.++|++.. .++.+. .. ....+++..++++++|
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD 102 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 102 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence 3459999996 999999999998743 2 5777777653 233222 11 2345788899999999
Q ss_pred EEEEEcCChH---------------HHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHH
Q 001973 205 VLVIMVTNEA---------------QAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLE 251 (988)
Q Consensus 205 vV~l~vp~~~---------------~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~ 251 (988)
+|+++-..+. .++++. +.+.++.+++.+|+..|+ +..+.-.++
T Consensus 103 vVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~---~~i~~~a~~~~~vlvv~N-Pvd~~t~ia 160 (175)
T d7mdha1 103 WALLIGAKPRGPGMERAALLDINGQIFADQG---KALNAVASKNVKVLVVGN-PCNTNALIC 160 (175)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHH---HHHHHHSCTTCEEEECSS-SHHHHHHHH
T ss_pred eEEEeeccCCCCCCcHHHHHHHHHHHHHHHH---HHHHhhCCCCcEEEEecC-cHHHHHHHH
Confidence 9999875442 233333 345566666666665655 444443333
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.78 E-value=0.012 Score=55.99 Aligned_cols=68 Identities=12% Similarity=0.017 Sum_probs=46.2
Q ss_pred CeEEEEccchHHHH--HHHHHHhC----CCeEEEEeCChhH--HHHHH--------hcCC----cccCCHHHHhccCcEE
Q 001973 147 TRVGFIGLGAMGFG--MATHLLRS----NFTVIGYDVYRPT--LTKFQ--------NVGG----LIANSPAEAAKDVGVL 206 (988)
Q Consensus 147 ~kIgiIG~G~mG~~--lA~~L~~~----G~~V~v~dr~~~~--~~~l~--------~~G~----~~~~s~~e~~~~aDvV 206 (988)
|||+|||+|..|.. ++.-+... .-++..+|+++++ .+.+- ..+. ..+++..++++++|+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 69999999987753 44444432 1389999998754 33221 1122 2467888999999999
Q ss_pred EEEcCChH
Q 001973 207 VIMVTNEA 214 (988)
Q Consensus 207 ~l~vp~~~ 214 (988)
+++...+.
T Consensus 82 v~ta~~~~ 89 (169)
T d1s6ya1 82 TTQFRVGG 89 (169)
T ss_dssp EECCCTTH
T ss_pred EEccccCC
Confidence 99997543
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.76 E-value=0.013 Score=56.01 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=57.6
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCC-eEEEEe-CC-hh-HHHHHHhc--C-Cc-ccCCHHHHhccCcEEEEEcCChHHH
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNF-TVIGYD-VY-RP-TLTKFQNV--G-GL-IANSPAEAAKDVGVLVIMVTNEAQA 216 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~d-r~-~~-~~~~l~~~--G-~~-~~~s~~e~~~~aDvV~l~vp~~~~~ 216 (988)
|+||||+| .|+.|.-+.+.|.++-+ ++...- ++ .. ++...... + .. ...++++..+++|++|+|+|.....
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~ 80 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASY 80 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHH
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHH
Confidence 46999997 59999999999998653 555442 22 11 12211110 1 11 2346667777899999999998754
Q ss_pred HHHHccccchhhhCCCCCEEEecCCCC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
+.+. . ..+..|||.|+--
T Consensus 81 ~~~~--------~-~~~~~VIDlSadf 98 (176)
T d1vkna1 81 DLVR--------E-LKGVKIIDLGADF 98 (176)
T ss_dssp HHHT--------T-CCSCEEEESSSTT
T ss_pred HHHH--------h-hccceEEecCccc
Confidence 4332 1 2578999999753
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.75 E-value=0.015 Score=51.21 Aligned_cols=70 Identities=10% Similarity=-0.004 Sum_probs=48.0
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH-HHHHHhc-CCcc---cCCHHHHhccCcEEEEEcCChHH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT-LTKFQNV-GGLI---ANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~-G~~~---~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
+.++|.|||.|.+|..-++.|.+.|.+|++++..... ...+.+. ++.. .-+ .+.+.++++|+.+..++..
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~-~~dl~~~~lv~~at~d~~~ 85 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFD-ETLLDSCWLAIAATDDDTV 85 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCC-GGGGTTCSEEEECCSCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCC-HHHhCCCcEEeecCCCHHH
Confidence 3569999999999999999999999999999866533 2333333 2221 112 2235567777777766553
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=95.74 E-value=0.0087 Score=62.11 Aligned_cols=99 Identities=21% Similarity=0.135 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc---C-CCccccccccccccCCCCCCCchhhHH---
Q 001973 313 GAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS---G-GSSWMFENRVPHMLDNDYTPYSALDIF--- 385 (988)
Q Consensus 313 g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~---~-~~s~~~~~~~~~~~~~~~~~~~~l~~~--- 385 (988)
|+|+.+||++|.....++++++|++.+.+..|.+.+++.+++... . ..|++++.....+...|-...+-++..
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~I~d~ 80 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDR 80 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCC
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHHhccc
Confidence 789999999999999999999999999999999998888776653 2 456655432221211111111111111
Q ss_pred ---HHHHHHHHHHHHhCCCCchHHHHHHH
Q 001973 386 ---VKDMGIIARECLSQRVPLHISTIAHQ 411 (988)
Q Consensus 386 ---~kDl~~~~~~a~~~gi~~pi~~a~~~ 411 (988)
--.-.+....|-++|+|+|++.+++.
T Consensus 81 a~~kGTG~Wt~~~al~~gvp~p~i~~Av~ 109 (300)
T d1pgja1 81 IGSKGTGLWSAQEALEIGVPAPSLNMAVV 109 (300)
T ss_dssp CCCCSHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHcCCCccHHHHHHH
Confidence 01235778899999999998866543
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0074 Score=58.21 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=65.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCc--c--c---CCHHHHhccCcEEEEEc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGL--I--A---NSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~--~--~---~s~~e~~~~aDvV~l~v 210 (988)
++|.|||+|-+|.+++..|.+.|. +++++||++++.+++... ... . . .+..+...++|+||-|+
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~T 98 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT 98 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecccc
Confidence 589999999999999999999986 799999998876654321 111 0 1 23445677999999999
Q ss_pred CChHHH---HHHHccccchhhhCCCCCEEEecCCCCH
Q 001973 211 TNEAQA---ESVLYGDLGAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 211 p~~~~~---~~vl~~~~~i~~~l~~g~ivId~st~~p 244 (988)
|....- +... .-...++++.+++|..-.+.
T Consensus 99 p~G~~~~~~~~~~----~~~~~~~~~~~v~Di~Y~p~ 131 (182)
T d1vi2a1 99 KVGMKPLENESLV----NDISLLHPGLLVTECVYNPH 131 (182)
T ss_dssp STTSTTSCSCCSC----CCGGGSCTTCEEEECCCSSS
T ss_pred CCccccccchhhh----hHHHhhhcchhhHHhhcCcc
Confidence 854310 0111 11345778899999975433
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.68 E-value=0.012 Score=52.28 Aligned_cols=103 Identities=20% Similarity=0.196 Sum_probs=71.9
Q ss_pred CeEEEEc----cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIG----LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG----~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
++|+||| .|..|..+.++|.+.||+|+..+.+.+.+ .|.+...++.|+-...|++++++|... +.+++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~~~-~~~~l-- 73 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPPKV-GLQVA-- 73 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCHHH-HHHHH--
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeCHHH-HHHHH--
Confidence 4899999 47899999999999999988888765443 377888899998888999999999765 44444
Q ss_pred ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec
Q 001973 223 DLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD 265 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld 265 (988)
++... +....+++...+... ++.+.+.+ .|+.++.
T Consensus 74 -~~~~~-~g~k~v~~~~g~~~~----~~~~~a~~--~gi~vig 108 (116)
T d1y81a1 74 -KEAVE-AGFKKLWFQPGAESE----EIRRFLEK--AGVEYSF 108 (116)
T ss_dssp -HHHHH-TTCCEEEECTTSCCH----HHHHHHHH--HTCEEEC
T ss_pred -HHHHh-cCCceEEeccchhhH----HHHHHHHH--cCCEEEc
Confidence 23333 223356665555443 34444444 3566553
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.62 E-value=0.013 Score=53.54 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=67.7
Q ss_pred CCCeEEEEcc----------chHHHHHHHHHHhCCCeEEEEeCChhHH-------HHH----HhcCCcccCCHHHHhccC
Q 001973 145 SVTRVGFIGL----------GAMGFGMATHLLRSNFTVIGYDVYRPTL-------TKF----QNVGGLIANSPAEAAKDV 203 (988)
Q Consensus 145 ~~~kIgiIG~----------G~mG~~lA~~L~~~G~~V~v~dr~~~~~-------~~l----~~~G~~~~~s~~e~~~~a 203 (988)
...||+|+|+ +.-...++..|.+.|.+|.+||..-+.. +.+ ...+...++++.++++++
T Consensus 12 ~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~ 91 (136)
T d1mv8a3 12 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS 91 (136)
T ss_dssp SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred CCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhc
Confidence 3469999998 4578889999999999999999632211 111 112345688999999999
Q ss_pred cEEEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCH
Q 001973 204 GVLVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 204 DvV~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p 244 (988)
|+|+++++++. .+++ ...+.++.+|+|+-...+
T Consensus 92 D~ivi~t~h~~-f~~l-------~~~~~~~~~I~D~~~~~~ 124 (136)
T d1mv8a3 92 DVLVLGNGDEL-FVDL-------VNKTPSGKKLVDLVGFMP 124 (136)
T ss_dssp SEEEECSCCGG-GHHH-------HHSCCTTCEEEESSSCCS
T ss_pred eEEEEEeCCHH-HHHH-------HHHhcCCCEEEECCCCCC
Confidence 99999999876 3333 234567889999887654
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.54 E-value=0.0041 Score=58.32 Aligned_cols=100 Identities=9% Similarity=-0.093 Sum_probs=69.9
Q ss_pred CcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc----CCCccccccccccccCCCCCCCch
Q 001973 311 GCGAGSGVKMA-----NQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS----GGSSWMFENRVPHMLDNDYTPYSA 381 (988)
Q Consensus 311 ~~g~a~~~Kl~-----~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~----~~~s~~~~~~~~~~~~~~~~~~~~ 381 (988)
..|....+++. .|...+++..++.|+..++++.|.+++++++...-+ ++.+ ++|+.-+. .+..+.+
T Consensus 18 a~Gi~~gl~~g~~~~~~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~--sRN~~~G~---~l~~G~~ 92 (155)
T d1txga1 18 AIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG--GRNGMLGE---LLGKGLS 92 (155)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC--HHHHHHHH---HHHTTCC
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCC--CCccHHHH---HHhhhhh
Confidence 45666667776 599999999999999999999999999987644333 2332 44442211 1111222
Q ss_pred hh--------------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001973 382 LD--------------IFVKDMGIIARECLSQRVPLHISTIAHQLFLA 415 (988)
Q Consensus 382 l~--------------~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~~ 415 (988)
++ +...-...+.++++++++++|+++.+++++..
T Consensus 93 ~~e~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~~ 140 (155)
T d1txga1 93 IDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTKLLDSIYRVLYE 140 (155)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHS
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhC
Confidence 22 34444667889999999999999999999863
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.54 E-value=0.023 Score=54.02 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=30.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCC-Ce-EEEEeCChhHH-HHHHhcC
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN-FT-VIGYDVYRPTL-TKFQNVG 189 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G-~~-V~v~dr~~~~~-~~l~~~G 189 (988)
+||||.|.|.+|..+.+.+.+.. .+ |.+.|+++... ..+...+
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~ 48 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELG 48 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTT
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcC
Confidence 59999999999999999998765 55 44556765443 3344433
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.021 Score=53.52 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=60.5
Q ss_pred CCeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|||-+. +|.+++..|.+.|..|++.+.. +.++.+.++++|+|+.++..+..+.
T Consensus 37 GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~--------------t~~l~~~~~~ADivI~a~G~p~~i~------- 95 (166)
T d1b0aa1 37 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF--------------TKNLRHHVENADLLIVAVGKPGFIP------- 95 (166)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS--------------CSCHHHHHHHCSEEEECSCCTTCBC-------
T ss_pred cceEEEEeccccccHHHHHHHHHhhccccccccc--------------cchhHHHHhhhhHhhhhccCccccc-------
Confidence 36899999998 9999999999999999999754 3466777889999999998766221
Q ss_pred chhhhCCCCCEEEecCCC
Q 001973 225 GAVSALSSGASIILSSTV 242 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~ 242 (988)
...+++|.++||....
T Consensus 96 --~~~vk~g~vvIDvGi~ 111 (166)
T d1b0aa1 96 --GDWIKEGAIVIDVGIN 111 (166)
T ss_dssp --TTTSCTTCEEEECCCE
T ss_pred --ccccCCCcEEEecCce
Confidence 3457899999998764
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.45 E-value=0.0068 Score=58.17 Aligned_cols=99 Identities=8% Similarity=-0.019 Sum_probs=65.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-----CCc-----ccCCHHHHhccCcEEEEEcCChHH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-----GGL-----IANSPAEAAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----G~~-----~~~s~~e~~~~aDvV~l~vp~~~~ 215 (988)
.++|-|||.|.++.+++..|.+.| +|++++|++++.+.+.+. ... ...+.......+|+++-|+|....
T Consensus 18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g~~ 96 (177)
T d1nvta1 18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMY 96 (177)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCT
T ss_pred CCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCccccc
Confidence 358999999999999999998877 899999999998887642 111 122344445678999999986531
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHH
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~ 246 (988)
-..-. ...--...+.++.++.|..-.+..+
T Consensus 97 ~~~~~-~~~~~~~~~~~~~~v~D~~y~p~~T 126 (177)
T d1nvta1 97 PNIDV-EPIVKAEKLREDMVVMDLIYNPLET 126 (177)
T ss_dssp TCCSS-CCSSCSTTCCSSSEEEECCCSSSSC
T ss_pred ccccc-cchhhhhccCcccceeeecCCcHhH
Confidence 11000 0000123356788888887554433
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.42 E-value=0.034 Score=52.64 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=42.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC-CeEEE-EeCChhH-HHHHHhcC------------------CcccCCHHHHhccCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN-FTVIG-YDVYRPT-LTKFQNVG------------------GLIANSPAEAAKDVG 204 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v-~dr~~~~-~~~l~~~G------------------~~~~~s~~e~~~~aD 204 (988)
|.||||-|.|++|..+.+.+.+.+ .+|.. .|+++.. ...+...+ .....+..++..++|
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vD 80 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD 80 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCC
Confidence 359999999999999999998776 45544 4666433 22333322 222224444555666
Q ss_pred EEEEEcCChH
Q 001973 205 VLVIMVTNEA 214 (988)
Q Consensus 205 vV~l~vp~~~ 214 (988)
+|+-|+|.-.
T Consensus 81 vViEcTG~f~ 90 (171)
T d1cf2o1 81 IVIDCTPEGI 90 (171)
T ss_dssp EEEECCSTTH
T ss_pred EEEEccCCCC
Confidence 6666666543
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.015 Score=54.87 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=61.2
Q ss_pred CeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
++|.|||-+. +|.++|..|.+.|..|++++.+ +.++.+..+++|+++.+++.+..++
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~--------------t~~l~~~~~~aDivi~a~G~~~~i~-------- 97 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPEMVK-------- 97 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTCBC--------
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEecc--------------cccHHHHHhhccchhhccccccccc--------
Confidence 5899999977 9999999999999999999865 3456667889999999999876221
Q ss_pred hhhhCCCCCEEEecCCCC
Q 001973 226 AVSALSSGASIILSSTVS 243 (988)
Q Consensus 226 i~~~l~~g~ivId~st~~ 243 (988)
..++++|.+|||.....
T Consensus 98 -~~~vk~g~iviDvgi~~ 114 (170)
T d1a4ia1 98 -GEWIKPGAIVIDCGINY 114 (170)
T ss_dssp -GGGSCTTCEEEECCCBC
T ss_pred -cccccCCCeEeccCccc
Confidence 34678999999998754
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.077 Score=48.95 Aligned_cols=70 Identities=9% Similarity=0.056 Sum_probs=51.9
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHH----HHHHhcCCcc----cCCHH---H-HhccCcEEEEEcCChHH
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTL----TKFQNVGGLI----ANSPA---E-AAKDVGVLVIMVTNEAQ 215 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~----~~l~~~G~~~----~~s~~---e-~~~~aDvV~l~vp~~~~ 215 (988)
.|-|+|.|.+|..++..|.+.|++|++.|.++++. +.+...|..+ .+++. + -++++|.++++++++..
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~ 84 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD 84 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence 69999999999999999999999999999998654 3334445532 12222 1 14678999999988764
Q ss_pred HH
Q 001973 216 AE 217 (988)
Q Consensus 216 ~~ 217 (988)
--
T Consensus 85 n~ 86 (153)
T d1id1a_ 85 NA 86 (153)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.01 E-value=0.026 Score=53.12 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=41.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~ 191 (988)
..+|.|+|+|.+|...+..+...|.+|++.|+++++.+.+++.|+.
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~ 73 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS 73 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred CCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc
Confidence 3589999999999999999989999999999999999998888764
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.94 E-value=0.03 Score=51.17 Aligned_cols=102 Identities=12% Similarity=0.121 Sum_probs=71.9
Q ss_pred CeEEEEcc----chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGL----GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
++|+|||+ +.+|..+..+|.++||+|+..+.....+ .|.....++.++-...|++++++|... +.+++
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp~~~-~~~~~-- 91 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVKPKL-TMEYV-- 91 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECSCHHH-HHHHH--
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEeCHHH-HHHHH--
Confidence 58999996 5799999999999999988887654322 377888899998888999999999654 55555
Q ss_pred ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 223 DLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
+++... ....+++..++..++ +.+.+.+ .|+.++
T Consensus 92 -~e~~~~-g~k~v~~~~G~~~ee----~~~~a~~--~gi~vi 125 (139)
T d2d59a1 92 -EQAIKK-GAKVVWFQYNTYNRE----ASKKADE--AGLIIV 125 (139)
T ss_dssp -HHHHHH-TCSEEEECTTCCCHH----HHHHHHH--TTCEEE
T ss_pred -HHHHHh-CCCEEEEeccccCHH----HHHHHHH--CCCEEE
Confidence 344332 334566655555443 3344444 456665
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=0.0093 Score=56.26 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=60.0
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhC-CCeE-EEEeCChhHH--HH------HHhcCCcccCCHHHHhccCcEEEEEcCCh
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRS-NFTV-IGYDVYRPTL--TK------FQNVGGLIANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~-G~~V-~v~dr~~~~~--~~------l~~~G~~~~~s~~e~~~~aDvV~l~vp~~ 213 (988)
+.+||+|+|+ |.||+.+++.+.+. ++++ -++++..... +. ....+....+++.+..+.+|+|+-... |
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~-p 81 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-P 81 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-H
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc-H
Confidence 3469999995 99999999988775 5664 4456543211 00 112245667888888899999887754 4
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCCCHHH
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTVSPGF 246 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~ 246 (988)
..+.+.+ +. ....+..+|..||+-...
T Consensus 82 ~~~~~~~---~~---a~~~~~~~ViGTTG~~~~ 108 (162)
T d1diha1 82 EGTLNHL---AF---CRQHGKGMVIGTTGFDEA 108 (162)
T ss_dssp HHHHHHH---HH---HHHTTCEEEECCCCCCHH
T ss_pred HHHHHHH---HH---HHhccceeEEecCCCcHH
Confidence 4455444 11 123466677777765443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.82 E-value=0.03 Score=52.60 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=41.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~ 191 (988)
.+|.|+|+|.+|...+..+...|.+|++.++++++.+.+++.|+.
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~ 73 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD 73 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc
Confidence 489999999999999999999999999999999999999888864
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=94.80 E-value=0.013 Score=56.31 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=57.3
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhC-CCeEEE-EeCCh-----hHHHHHHhc--CC-----cccCCHHHHhccCcEEEEEc
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRS-NFTVIG-YDVYR-----PTLTKFQNV--GG-----LIANSPAEAAKDVGVLVIMV 210 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~-G~~V~v-~dr~~-----~~~~~l~~~--G~-----~~~~s~~e~~~~aDvV~l~v 210 (988)
|+||+||| .|+.|..+.+.|..+ .+++.. +-++. ++....... +. ....+......++|++|+|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al 80 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT 80 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence 47999999 899999999999997 456543 33221 112221110 11 11233444457899999999
Q ss_pred CChHHHHHHHccccchhhhCCCCCEEEecCCCC
Q 001973 211 TNEAQAESVLYGDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 211 p~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~ 243 (988)
|+....+.+. .....+..+||.|.-.
T Consensus 81 p~~~s~~~~~-------~~~~~~~~vIDlSadf 106 (179)
T d2g17a1 81 AHEVSHDLAP-------QFLQAGCVVFDLSGAF 106 (179)
T ss_dssp CHHHHHHHHH-------HHHHTTCEEEECSSTT
T ss_pred cchhHHHHhh-------hhhhcCceeecccccc
Confidence 9876444332 2234688999999753
|
| >d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Conserved hypothetical protein MTH1747 domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.79 E-value=0.025 Score=49.35 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccccccccccccCCCCCCCchhhHHHHHHHHH
Q 001973 313 GAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDSGGSSWMFENRVPHMLDNDYTPYSALDIFVKDMGII 392 (988)
Q Consensus 313 g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~kDl~~~ 392 (988)
|.++.+||+...+..+..+++.|++..+++.|+.. .+++.+..+.+..|. ....+++.+... .-..+..+|+.+
T Consensus 1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~Gv~~-~l~~~l~~s~~~~~~--~~~~~~v~~~~~---ha~Rr~~EM~Ei 74 (112)
T d1i36a1 1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEE-DVLEMLEYTEGNDFR--ESAISRLKSSCI---HARRRYEEMKEV 74 (112)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTSCSSTH--HHHHHHHHHHHH---THHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHcCCccHH--HHHHHHhcCCcc---hhhHHHHHHHHH
Confidence 67899999999999999999999999999999985 455555544433331 111111111111 123466888888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHcCC
Q 001973 393 ARECLSQRVPLHISTIAHQLFLAGSAAGW 421 (988)
Q Consensus 393 ~~~a~~~gi~~pi~~a~~~~~~~a~~~g~ 421 (988)
.++.++ ++++.+.+++.++++...+.+.
T Consensus 75 a~tl~~-~l~P~m~~a~a~~~~~~~d~~~ 102 (112)
T d1i36a1 75 QDMLAE-VIDPVMPTCIIRIFDKLKDVKV 102 (112)
T ss_dssp HHHHHT-TSCCSHHHHHHHHHHHHCC---
T ss_pred HHHHHH-hCCchHHHHHHHHHHHHHhcCC
Confidence 899887 4888889999999888776543
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.76 E-value=0.015 Score=52.49 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=56.2
Q ss_pred CCeEEEEcc----chHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHH
Q 001973 146 VTRVGFIGL----GAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 146 ~~kIgiIG~----G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl 220 (988)
..+|+|||+ |.+|..+.++|.+.| ++|+..+.+.+.+ .|.+...|+.|+-...|++++++|... +.+++
T Consensus 8 PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp~~~-~~~~~ 81 (129)
T d2csua1 8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPKRF-VKDTL 81 (129)
T ss_dssp CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCHHH-HHHHH
T ss_pred CCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecChHH-hHHHH
Confidence 458999997 899999999998876 6899888765443 377888899998888999999999755 55555
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.72 E-value=0.042 Score=52.12 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=53.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcc-----cCCHHHHhc-----cCcEEEEEcCChH
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLI-----ANSPAEAAK-----DVGVLVIMVTNEA 214 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~-----~~s~~e~~~-----~aDvV~l~vp~~~ 214 (988)
..+|.|+|+|.+|...+..+...|. .|++.|+++++.+.+++.|+.. ..+..+.++ ..|+||.|+..+.
T Consensus 29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~ 108 (174)
T d1f8fa2 29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPE 108 (174)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHH
T ss_pred CCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHH
Confidence 3589999999999999999988886 4677899999999988888642 123333322 2577777776665
Q ss_pred HHHHH
Q 001973 215 QAESV 219 (988)
Q Consensus 215 ~~~~v 219 (988)
..+..
T Consensus 109 ~~~~~ 113 (174)
T d1f8fa2 109 ILKQG 113 (174)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=94.66 E-value=0.027 Score=55.89 Aligned_cols=108 Identities=13% Similarity=0.043 Sum_probs=72.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
.++|.|-|.|++|..+|+.|.+.|..|++.|.++..++.+... |....+.-+-.-.+||+++-|--... +. .
T Consensus 39 g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~~~~-----I~--~ 111 (230)
T d1leha1 39 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALGAV-----LN--D 111 (230)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSCSCC-----BS--T
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEecccccccc-----cC--h
Confidence 4699999999999999999999999999999999998877754 65554333333458999998865433 21 1
Q ss_pred chhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 225 GAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
+-.+.++ -++|+...+..|.+. +..+.|.+ +|+.|+
T Consensus 112 ~~~~~l~-ak~Ive~ANn~~t~~-ea~~~L~~--rGI~~i 147 (230)
T d1leha1 112 FTIPQLK-AKVIAGSADNQLKDP-RHGKYLHE--LGIVYA 147 (230)
T ss_dssp THHHHCC-CSEECCSCSCCBSSH-HHHHHHHH--HTCEEC
T ss_pred HHhhccC-ccEEEecccCCCCCc-hHHHHHHh--hCcEEE
Confidence 2223343 357776665655432 34455555 355554
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=94.55 E-value=0.027 Score=54.47 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=37.3
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
.++|-|.| .|.+|..+|+.|++.|.+|++.+|++++.+++.+
T Consensus 23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~ 65 (191)
T d1luaa1 23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 65 (191)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHH
Confidence 35788888 7999999999999999999999999999877654
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.51 E-value=0.0016 Score=61.73 Aligned_cols=104 Identities=16% Similarity=0.104 Sum_probs=73.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc----CCCcccccccccc--ccCCCCC-----CC
Q 001973 311 GCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNIITDS----GGSSWMFENRVPH--MLDNDYT-----PY 379 (988)
Q Consensus 311 ~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l~~~----~~~s~~~~~~~~~--~~~~~~~-----~~ 379 (988)
..|....+++..|+..+++..++.|+..++++.|.+.++++....-+ +++|...+|+.-+ +..+... ..
T Consensus 19 a~Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~~G~~l~~g~~~~e~~~~~ 98 (160)
T d1n1ea1 19 GSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTS 98 (160)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHHHHHHHHHTCCHHHHHHSC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHHHHHHHhccccHHHHHHhc
Confidence 55667777888999999999999999999999999988887754443 3555555554211 1111100 00
Q ss_pred chhhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 001973 380 SALDIFVKDMGIIARECLSQRVPLHISTIAHQLFL 414 (988)
Q Consensus 380 ~~l~~~~kDl~~~~~~a~~~gi~~pi~~a~~~~~~ 414 (988)
...-....-...+.++++++++++|+++++++++.
T Consensus 99 ~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~ 133 (160)
T d1n1ea1 99 KAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVY 133 (160)
T ss_dssp CSCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHh
Confidence 11234556667888999999999999999999974
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.48 E-value=0.049 Score=55.16 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=52.8
Q ss_pred CeEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEE--EcCChHHHHHHHcc
Q 001973 147 TRVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI--MVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l--~vp~~~~~~~vl~~ 222 (988)
+||++| |.+-+|.++|+.|++.|++|.+.+|++++.+++.++ +.+. ..+++.+ =+.++.+++.++
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------i~~~--g~~~~~~~~Dv~~~~~v~~~~-- 69 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASE-------INQA--GGHAVAVKVDVSDRDQVFAAV-- 69 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTSHHHHHHHH--
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEeeCCCHHHHHHHH--
Confidence 378877 556799999999999999999999999887765432 1111 1122222 234555566655
Q ss_pred ccchhhhCCCCCEEEecCC
Q 001973 223 DLGAVSALSSGASIILSST 241 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st 241 (988)
+.+.+...+=+++|+...
T Consensus 70 -~~~~~~~g~iDilVnnAG 87 (255)
T d1gega_ 70 -EQARKTLGGFDVIVNNAG 87 (255)
T ss_dssp -HHHHHHTTCCCEEEECCC
T ss_pred -HHHHHHhCCccEEEeccc
Confidence 344444444456666543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.47 E-value=0.067 Score=47.88 Aligned_cols=88 Identities=8% Similarity=0.086 Sum_probs=61.3
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc----cCCHHHH----hccCcEEEEEcCChHHHHHH
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI----ANSPAEA----AKDVGVLVIMVTNEAQAESV 219 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~----~~s~~e~----~~~aDvV~l~vp~~~~~~~v 219 (988)
.|-|+|.|.+|..++..|. |++|.+.+.++++.+.+...|..+ .++.+-. +++|+.++++.+++..-..+
T Consensus 2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~ 79 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHC 79 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHHH
Confidence 4789999999999999994 678899999999999998887653 2222211 46789999999887644333
Q ss_pred HccccchhhhCCCC-CEEEecCC
Q 001973 220 LYGDLGAVSALSSG-ASIILSST 241 (988)
Q Consensus 220 l~~~~~i~~~l~~g-~ivId~st 241 (988)
. .....+.+. ++++-..+
T Consensus 80 ~----~~~r~~~~~~~iia~~~~ 98 (129)
T d2fy8a1 80 I----LGIRKIDESVRIIAEAER 98 (129)
T ss_dssp H----HHHHHHCSSSCEEEECSS
T ss_pred H----HHHHHHCCCceEEEEEcC
Confidence 3 223334444 56654443
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.018 Score=54.51 Aligned_cols=74 Identities=14% Similarity=0.210 Sum_probs=56.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc---CCHHH---HhccCcEEEEEcCChHHHHHHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA---NSPAE---AAKDVGVLVIMVTNEAQAESVL 220 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~---~s~~e---~~~~aDvV~l~vp~~~~~~~vl 220 (988)
.+|.|+|+|.+|...+..+...|.++++.++++++.+.+++.|+..+ .+... ..+..|++|.|+..+..+...+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~ 111 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFT 111 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHHH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHHHHH
Confidence 58999999999999999888899999999999999988888886421 12211 2235788888887765555443
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=94.32 E-value=0.02 Score=54.85 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=33.8
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT 181 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~ 181 (988)
+.+||+|||.|..|..-|..|+++||+|++|++++.-
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI 78 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence 3469999999999999999999999999999998654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.28 E-value=0.027 Score=49.36 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=32.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
..+||||||.|..|..|+....+.|+++.++|.+++
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 346999999999999999999999999999998854
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=94.26 E-value=0.018 Score=58.07 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=32.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
.+||.|||.|.-|..+|..|+++|++|++++++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 46999999999999999999999999999998754
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.02 E-value=0.14 Score=48.43 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=54.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcccC------C-HHHH-----hccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIAN------S-PAEA-----AKDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~~------s-~~e~-----~~~aDvV~l~vp~ 212 (988)
..+|.|+|+|-+|......+...|. +|++.|+++++.+..++.|+..+- + ..+. -...|++|.++..
T Consensus 30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~ 109 (176)
T d1d1ta2 30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGH 109 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSCC
T ss_pred CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCCc
Confidence 3479999999999999999999995 799999999999999998875321 1 1111 1246777777766
Q ss_pred hHHHHHH
Q 001973 213 EAQAESV 219 (988)
Q Consensus 213 ~~~~~~v 219 (988)
+...+..
T Consensus 110 ~~~~~~a 116 (176)
T d1d1ta2 110 LETMIDA 116 (176)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 6544433
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.077 Score=53.27 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=56.1
Q ss_pred eEEEE-cc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 148 RVGFI-GL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 148 kIgiI-G~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|+.+| |. +-+|..+|..|+++|++|.++||++++++++.++ ..+.-.++-.+..=+.+...++.++ +.
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~-------~~~~~~~~~~~~~Dvs~~~~v~~~~---~~ 77 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-------CKGLGAKVHTFVVDCSNREDIYSSA---KK 77 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEeeCCCHHHHHHHH---HH
Confidence 56666 55 4599999999999999999999999988876543 1111112223333345566666666 45
Q ss_pred hhhhCCCCCEEEecCCC
Q 001973 226 AVSALSSGASIILSSTV 242 (988)
Q Consensus 226 i~~~l~~g~ivId~st~ 242 (988)
+.+...+=+++|++...
T Consensus 78 i~~~~g~idilinnag~ 94 (244)
T d1yb1a_ 78 VKAEIGDVSILVNNAGV 94 (244)
T ss_dssp HHHHTCCCSEEEECCCC
T ss_pred HHHHcCCCceeEeeccc
Confidence 55556556777776654
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=93.99 E-value=0.03 Score=50.93 Aligned_cols=105 Identities=15% Similarity=0.185 Sum_probs=72.3
Q ss_pred CeEEEEcc----chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 147 TRVGFIGL----GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiIG~----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
++|+|||+ +.+|..+.++|.+.||++..|+.++... .+ .|.....++.+.-...|++++++|... +.+++
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~-~i--~g~~~~~~l~~i~~~iD~v~v~~p~~~-v~~~v-- 87 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE-EL--FGEEAVASLLDLKEPVDILDVFRPPSA-LMDHL-- 87 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS-EE--TTEECBSSGGGCCSCCSEEEECSCHHH-HTTTH--
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc-ee--eceecccchhhccCCCceEEEeccHHH-HHHHH--
Confidence 48999997 7899999999999999999998765321 11 367778888888888999999999654 44444
Q ss_pred ccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEec
Q 001973 223 DLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVD 265 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ld 265 (988)
++... +..+.+|+....... ++.+...+ .|+.++.
T Consensus 88 -~~~~~-~g~k~i~~q~G~~~~----e~~~~a~~--~Gi~vV~ 122 (136)
T d1iuka_ 88 -PEVLA-LRPGLVWLQSGIRHP----EFEKALKE--AGIPVVA 122 (136)
T ss_dssp -HHHHH-HCCSCEEECTTCCCH----HHHHHHHH--TTCCEEE
T ss_pred -HHHHh-hCCCeEEEecCccCH----HHHHHHHH--cCCEEEc
Confidence 23333 234566765554433 34444444 4666653
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=93.99 E-value=0.076 Score=53.73 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=54.6
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEE--cCChHHHHHHHccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIM--VTNEAQAESVLYGD 223 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~--vp~~~~~~~vl~~~ 223 (988)
||++| |.+-+|.++|..|++.|++|.+.+|++++++++.+. +.+. ..++.++. +.++.+++.++
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-------l~~~--g~~~~~~~~Dvs~~~~v~~~~--- 70 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE-------LREA--GVEADGRTCDVRSVPEIEALV--- 70 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhc--CCcEEEEEeecCCHHHHHHHH---
Confidence 78888 667799999999999999999999999887765542 1111 11222222 34566677666
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+.+.+...+=+++|+...
T Consensus 71 ~~~~~~~g~iDilVnnAG 88 (257)
T d2rhca1 71 AAVVERYGPVDVLVNNAG 88 (257)
T ss_dssp HHHHHHTCSCSEEEECCC
T ss_pred HHHHHHhCCCCEEEeccc
Confidence 455555544467776643
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.94 E-value=0.034 Score=52.41 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=51.0
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCccc-C-----CHH-HHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIA-N-----SPA-EAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~-~-----s~~-e~~~~aDvV~l~vp~~ 213 (988)
.+|.|+|+|.+|...+..+...|.+|++.|+++++.+.+++.|+..+ + +.. ...+..|+++.|+...
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~ 102 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL 102 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence 58999999999999998888899999999999999999998886421 1 111 1223457777776653
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=93.87 E-value=0.019 Score=58.66 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=31.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
|+|+|||.|.-|...|..|+++|++|+++++++.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 34 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5899999999999999999999999999998643
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.86 E-value=0.095 Score=49.59 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=54.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcccCC-------HHHHh-----ccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIANS-------PAEAA-----KDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~~s-------~~e~~-----~~aDvV~l~vp~~ 213 (988)
.+|.|+|+|.+|......+...|. +|++.|+++++.+..++.|+..+-+ ..+.. ...|++|.++..+
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~~ 108 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRI 108 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCCCc
Confidence 489999999999999999999985 7999999999999999988764321 12221 2357777777766
Q ss_pred HHHHHH
Q 001973 214 AQAESV 219 (988)
Q Consensus 214 ~~~~~v 219 (988)
...+..
T Consensus 109 ~~~~~~ 114 (174)
T d1p0fa2 109 ETMMNA 114 (174)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 544443
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=93.84 E-value=0.036 Score=51.01 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=51.7
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCC-C---eEEEEeCChhHHHHHHhcC----CcccCCHHHHhccCcEEEEEcCChHHHH
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSN-F---TVIGYDVYRPTLTKFQNVG----GLIANSPAEAAKDVGVLVIMVTNEAQAE 217 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G-~---~V~v~dr~~~~~~~l~~~G----~~~~~s~~e~~~~aDvV~l~vp~~~~~~ 217 (988)
||||||| .|+.|..+.+.|.++. | ++..+..+... .+....+ ........+..+++|++|+|+|+....+
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~-gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~ 79 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-VPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEK 79 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS-SBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc-ccccccCCcceeeecccchhhhccccEEEEecCchHHHH
Confidence 6999997 6999999999887643 4 45444322111 0000000 1111223355789999999999876433
Q ss_pred HHHccccchhhhCCCCCEEEecCCC
Q 001973 218 SVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 218 ~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
-+ ..+.+ ...+.+|||+|+.
T Consensus 80 ~~----~~l~~-~g~~~~VIDlSsd 99 (147)
T d1mb4a1 80 VY----PALRQ-AGWKGYWIDAAST 99 (147)
T ss_dssp HH----HHHHH-TTCCSEEEESSST
T ss_pred Hh----HHHHH-cCCceEEEeCCcc
Confidence 22 12222 1233579999975
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.62 E-value=0.14 Score=48.37 Aligned_cols=74 Identities=12% Similarity=0.172 Sum_probs=54.7
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcccCC-------HHHHh-----ccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIANS-------PAEAA-----KDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~~s-------~~e~~-----~~aDvV~l~vp~~ 213 (988)
.+|.|+|+|.+|...+..+...|. .|++.|+++++.+..++.|+..+-+ ..... ...|++|-|+..+
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~ 109 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTA 109 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCH
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecccc
Confidence 489999999999999999999997 6889999999999888888753221 11111 2457777777766
Q ss_pred HHHHHHH
Q 001973 214 AQAESVL 220 (988)
Q Consensus 214 ~~~~~vl 220 (988)
..++..+
T Consensus 110 ~~~~~a~ 116 (174)
T d1e3ia2 110 QTLKAAV 116 (174)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 6554443
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=93.40 E-value=0.052 Score=55.79 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=45.4
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhH--------HHHHHhcCCccc-------CCHHHHhccCcEEEEE
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPT--------LTKFQNVGGLIA-------NSPAEAAKDVGVLVIM 209 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~--------~~~l~~~G~~~~-------~s~~e~~~~aDvV~l~ 209 (988)
++||.|+| .|.+|..++..|.++||+|++.+|++.. ...+...++.+. ++..+....++.++.+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~ 82 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 82 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence 46899999 5999999999999999999999987432 222333343321 1233445566776666
Q ss_pred cCC
Q 001973 210 VTN 212 (988)
Q Consensus 210 vp~ 212 (988)
.+.
T Consensus 83 ~~~ 85 (312)
T d1qyda_ 83 LAG 85 (312)
T ss_dssp CCC
T ss_pred hhh
Confidence 653
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.39 E-value=0.039 Score=54.29 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=45.8
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEE--EeCChhHHHHHHhcCCcc-------cCCHHHHhccCcEEEEEcC
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIG--YDVYRPTLTKFQNVGGLI-------ANSPAEAAKDVGVLVIMVT 211 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v--~dr~~~~~~~l~~~G~~~-------~~s~~e~~~~aDvV~l~vp 211 (988)
|++|-|.| .|.+|+.+++.|++.||+|.+ ..|++++...+.. ++.. ..+..++++++|.|+.+..
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~ 77 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITDADSINPAFQGIDALVILTS 77 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeeccccccccccccceeeEEEEe
Confidence 57999998 799999999999999987554 5688877665442 2211 1233455677787776653
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.35 E-value=0.08 Score=53.35 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=53.3
Q ss_pred CeEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 147 TRVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 147 ~kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
-||++| |.+-+|.++|+.|++.|++|.+++|+++.++++.++ +.+.-.++..+..=+.++.+++.++ +
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~-------l~~~g~~~~~~~~Dvt~~~~v~~~~---~ 79 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDE-------IKSFGYESSGYAGDVSKKEEISEVI---N 79 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH-------HHTTTCCEEEEECCTTCHHHHHHHH---H
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEccCCCHHHHHHHH---H
Confidence 377777 456899999999999999999999999888766542 1110011122222235556666666 4
Q ss_pred chhhhCCCCCEEEecC
Q 001973 225 GAVSALSSGASIILSS 240 (988)
Q Consensus 225 ~i~~~l~~g~ivId~s 240 (988)
.+.+...+=+++|+..
T Consensus 80 ~~~~~~g~iDilvnna 95 (251)
T d2c07a1 80 KILTEHKNVDILVNNA 95 (251)
T ss_dssp HHHHHCSCCCEEEECC
T ss_pred HHHHhcCCceeeeecc
Confidence 5555554445666654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.33 E-value=0.031 Score=53.60 Aligned_cols=35 Identities=14% Similarity=0.369 Sum_probs=31.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPT 181 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~ 181 (988)
+||+|||.|..|...|..|+++|+ +|+++++++..
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~ 40 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYV 40 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence 599999999999999999999998 59999987643
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=93.29 E-value=0.028 Score=45.61 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=31.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
++|||||.|..|..|+..-.+-|+++.++|.+++
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 5899999999999999999999999999998754
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.17 E-value=0.016 Score=54.16 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=55.2
Q ss_pred eEEEEcc-chHHHHHHHHHHhCCC---eEEEEeCChhHHHHHHhc--CCcccCCHHHHhccCcEEEEEcCChHHHHHHHc
Q 001973 148 RVGFIGL-GAMGFGMATHLLRSNF---TVIGYDVYRPTLTKFQNV--GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 148 kIgiIG~-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~--G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~ 221 (988)
||||||+ |+.|..+.+.|.++.| ++....-+...-+.+... .........+...++|++|+++|.....+.+.
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~~- 81 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYAP- 81 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHHH-
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHHh-
Confidence 7999998 9999999999998865 244333221111110000 01122233445678999999999766544332
Q ss_pred cccchhhhCCCCCEEEecCCCC
Q 001973 222 GDLGAVSALSSGASIILSSTVS 243 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~ 243 (988)
....++..|||.|+-.
T Consensus 82 ------~~~~~~~~VIDlSsdf 97 (154)
T d2gz1a1 82 ------YAVKAGVVVVDNTSYF 97 (154)
T ss_dssp ------HHHHTTCEEEECSSTT
T ss_pred ------hhccccceehhcChhh
Confidence 2345789999999753
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=93.17 E-value=0.15 Score=51.01 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=53.7
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|+.+| |.+-+|.++|+.|++.|++|.+.+|++++.+++.+. .-..+..+..=+.++.+++.++ +.
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~---~~ 71 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDY----------LGANGKGLMLNVTDPASIESVL---EK 71 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH----------hCCCCcEEEEEecCHHHhhhhh---hh
Confidence 56666 567799999999999999999999999988877642 1111222222245666677666 45
Q ss_pred hhhhCCCCCEEEecC
Q 001973 226 AVSALSSGASIILSS 240 (988)
Q Consensus 226 i~~~l~~g~ivId~s 240 (988)
+.....+=+++|+..
T Consensus 72 ~~~~~g~iDilVnnA 86 (243)
T d1q7ba_ 72 IRAEFGEVDILVNNA 86 (243)
T ss_dssp HHHHTCSCSEEEECC
T ss_pred hhcccCCcceehhhh
Confidence 555554446667654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.10 E-value=0.089 Score=53.15 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=52.6
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEE--cCChHHHHHHHccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIM--VTNEAQAESVLYGD 223 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~--vp~~~~~~~vl~~~ 223 (988)
|+++| |.+-+|.++|..|++.|++|.+.+|++++.+++.++ +.+. ..+++.+. +.++.+++.++
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~-------l~~~--g~~~~~~~~Dvs~~~~~~~~~--- 79 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDE-------IQQL--GGQAFACRCDITSEQELSALA--- 79 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHH-------HHHT--TCCEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHc--CCcEEEEEccCCCHHHHHHHH---
Confidence 67777 667899999999999999999999999887765532 1111 11222222 34555666655
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+.+.+...+=+++|+...
T Consensus 80 ~~~~~~~g~iDilvnnAG 97 (255)
T d1fmca_ 80 DFAISKLGKVDILVNNAG 97 (255)
T ss_dssp HHHHHHHSSCCEEEECCC
T ss_pred HHHHHHcCCCCEeeeCCc
Confidence 344444444456666543
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=93.06 E-value=0.036 Score=58.48 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCCCeEEEEccchHHHHHHHHHHhCC--CeEEEEeCChh
Q 001973 144 NSVTRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYRP 180 (988)
Q Consensus 144 ~~~~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~~ 180 (988)
..++||+|||+|.-|..+|..|++.| ++|++++++.+
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 34579999999999999999998876 69999999854
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.02 E-value=0.039 Score=57.77 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=32.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
++||.|||+|.-|...|..|+++|++|++++.+..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 46999999999999999999999999999998753
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.01 E-value=0.057 Score=47.49 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=32.0
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
..+|.|||.|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 35899999999999999999999999999987653
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.99 E-value=0.13 Score=51.55 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=53.1
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|+.+| |.+-+|.++|+.|++.|++|.+.+|++++.+++.++- -..+..+-.=+.++.+++.++ +.
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~---~~ 73 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL----------ADAARYVHLDVTQPAQWKAAV---DT 73 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------GGGEEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------hCcceEEEeecCCHHHHHHHH---HH
Confidence 56666 4577999999999999999999999999888776531 111111112245566666665 44
Q ss_pred hhhhCCCCCEEEecCCC
Q 001973 226 AVSALSSGASIILSSTV 242 (988)
Q Consensus 226 i~~~l~~g~ivId~st~ 242 (988)
+.....+=+++|+....
T Consensus 74 ~~~~~g~idilinnAG~ 90 (244)
T d1nffa_ 74 AVTAFGGLHVLVNNAGI 90 (244)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHhCCCeEEEECCcc
Confidence 44444444666665543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.92 E-value=0.082 Score=49.64 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=53.8
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhcCCccc-----CCHHHHh------ccCcEEEEEcCCh
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNVGGLIA-----NSPAEAA------KDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~G~~~~-----~s~~e~~------~~aDvV~l~vp~~ 213 (988)
.+|.|+|+ |.+|...+..+...| .+|++.++++++.+.+++.|+..+ .++.+.. ...|++|-|+..+
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 108 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSE 108 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCH
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccccc
Confidence 48999995 999999999888888 589999999999999998886421 2222222 2368888888776
Q ss_pred HHHHH
Q 001973 214 AQAES 218 (988)
Q Consensus 214 ~~~~~ 218 (988)
..++.
T Consensus 109 ~~~~~ 113 (170)
T d1jvba2 109 KTLSV 113 (170)
T ss_dssp HHHTT
T ss_pred hHHHh
Confidence 64443
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=92.86 E-value=0.13 Score=51.91 Aligned_cols=84 Identities=10% Similarity=0.130 Sum_probs=52.2
Q ss_pred eEEEE-c-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 148 RVGFI-G-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 148 kIgiI-G-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|+++| | .+-+|.++|..|++.|++|.+.+|++++++++.++ +.+.-..+..+..=+.++.+++.++ +.
T Consensus 9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~~g~~~~~~~~Dv~~~~~v~~~~---~~ 78 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ-------WRSKGFKVEASVCDLSSRSERQELM---NT 78 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCEEEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCceEEEeeCCCHHHHHHHH---HH
Confidence 55555 4 45699999999999999999999999988776542 1111011111222244556666665 34
Q ss_pred hhhhCC-CCCEEEecCC
Q 001973 226 AVSALS-SGASIILSST 241 (988)
Q Consensus 226 i~~~l~-~g~ivId~st 241 (988)
+..... +=+++|+...
T Consensus 79 ~~~~~~~~idilvnnAG 95 (259)
T d2ae2a_ 79 VANHFHGKLNILVNNAG 95 (259)
T ss_dssp HHHHTTTCCCEEEECCC
T ss_pred HHHHhCCCceEEEECCc
Confidence 445443 3467777654
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=92.82 E-value=0.19 Score=50.17 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=52.3
Q ss_pred eEEEE-c-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 148 RVGFI-G-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 148 kIgiI-G-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|+.+| | .+-+|.++|+.|++.|++|.+.+|+.++.+++.+.- .+..+..=+.++.+++.++ +.
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~------------~~~~~~~Dv~~~~~v~~~~---~~ 70 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV------------GAHPVVMDVADPASVERGF---AE 70 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT------------TCEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc------------CCeEEEEecCCHHHHHHHH---HH
Confidence 45555 5 567999999999999999999999999888776531 1112222245566666665 44
Q ss_pred hhhhCCCCCEEEecCC
Q 001973 226 AVSALSSGASIILSST 241 (988)
Q Consensus 226 i~~~l~~g~ivId~st 241 (988)
+.+...+=+++|+...
T Consensus 71 ~~~~~g~iDilVnnAG 86 (242)
T d1ulsa_ 71 ALAHLGRLDGVVHYAG 86 (242)
T ss_dssp HHHHHSSCCEEEECCC
T ss_pred HHHhcCCceEEEECCc
Confidence 4444444456776654
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.79 E-value=0.061 Score=47.79 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=31.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
..++.|||.|.+|.-+|..|++.|.+|+++++++
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence 3599999999999999999999999999999865
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=92.75 E-value=0.097 Score=46.34 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=32.3
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
..+|.|||.|.+|.-+|..|++.|++|+++++++.
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 46999999999999999999999999999998753
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.13 Score=51.61 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=53.3
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|+.+| |.+-+|.++|+.|++.|++|.+.||++++.+++.++.-. +-.+..=+.++.+++.++ +.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-----------~~~~~~Dvs~~~~v~~~~---~~ 72 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG-----------AVFILCDVTQEDDVKTLV---SE 72 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT-----------EEEEECCTTSHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCC-----------CeEEEccCCCHHHHHHHH---HH
Confidence 45555 457899999999999999999999999998887765321 111222245566666666 34
Q ss_pred hhhhCCCCCEEEecCC
Q 001973 226 AVSALSSGASIILSST 241 (988)
Q Consensus 226 i~~~l~~g~ivId~st 241 (988)
+.+...+=+++|+...
T Consensus 73 ~~~~~g~iDilVnnAG 88 (250)
T d1ydea1 73 TIRRFGRLDCVVNNAG 88 (250)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHhcCCCCEEEeccc
Confidence 4444444456666554
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.71 E-value=0.11 Score=48.88 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=53.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhcCCccc----CC-HHHHh-----ccCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNVGGLIA----NS-PAEAA-----KDVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~G~~~~----~s-~~e~~-----~~aDvV~l~vp~~~~ 215 (988)
.+|.|+|+|.+|...+..+...| ..|++.|+++++.+.+++.|+..+ ++ .++.. ...|++|.|+.....
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~ 113 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQAT 113 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHHH
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcchH
Confidence 48999999999999988887777 578889999999999988876421 12 12222 136777777777665
Q ss_pred HHHHH
Q 001973 216 AESVL 220 (988)
Q Consensus 216 ~~~vl 220 (988)
++..+
T Consensus 114 ~~~a~ 118 (172)
T d1h2ba2 114 VDYTP 118 (172)
T ss_dssp HHHGG
T ss_pred HHHHH
Confidence 55443
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=92.64 E-value=0.041 Score=57.05 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=32.2
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
+.+||.|||.|..|...|..|+++|++|+++++++
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34689999999999999999999999999999864
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=92.63 E-value=0.091 Score=50.22 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=53.3
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhc-------C-CcccCCHHHHhccCcEEEEEcCChH
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNV-------G-GLIANSPAEAAKDVGVLVIMVTNEA 214 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~-------G-~~~~~s~~e~~~~aDvV~l~vp~~~ 214 (988)
++.|||||| .|+.|.-+.+.|.++- +++....-+...-+.+.+. . ........+...++|++|+|+|+..
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~ 83 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGT 83 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSH
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccch
Confidence 456999997 5999999999999875 4655543222111112110 1 1112233445678999999999977
Q ss_pred HHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 215 QAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 215 ~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
..+.+ +.+.....+|+.++.
T Consensus 84 s~~~~--------~~l~~~~~~v~~~~~ 103 (183)
T d2cvoa1 84 TQEII--------KGLPQELKIVDLSAD 103 (183)
T ss_dssp HHHHH--------HTSCSSCEEEECSST
T ss_pred HHHHH--------HHHHhcCcccccchh
Confidence 54433 223344455565543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.19 Score=50.62 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=53.6
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEE--cCChHHHHHHHccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIM--VTNEAQAESVLYGD 223 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~--vp~~~~~~~vl~~~ 223 (988)
|+.+| |.+-+|.++|+.|++.|++|++++|++++++++.++ +.+.-....++.+. +.++.+++.++
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~Dls~~~~v~~~v--- 80 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAE-------CKSAGYPGTLIPYRCDLSNEEDILSMF--- 80 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCSSEEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCceEEEEEccCCCHHHHHHHH---
Confidence 56666 678899999999999999999999999988776542 11111112333322 45566666666
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+.+.+...+=+++|++..
T Consensus 81 ~~~~~~~g~iD~lVnnAg 98 (257)
T d1xg5a_ 81 SAIRSQHSGVDICINNAG 98 (257)
T ss_dssp HHHHHHHCCCSEEEECCC
T ss_pred HHHHHhcCCCCEEEeccc
Confidence 344444433356666553
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=92.58 E-value=0.35 Score=42.69 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHH----HhcC-CCccccccc-cccccCCCCCCCchhhHHHHHHHHHHHHHHhCC
Q 001973 329 HIASAAEAMAFGARLGLN--TRVLFNII----TDSG-GSSWMFENR-VPHMLDNDYTPYSALDIFVKDMGIIARECLSQR 400 (988)
Q Consensus 329 ~~~~~~Ea~~la~~~Gid--~~~~~~~l----~~~~-~~s~~~~~~-~~~~~~~~~~~~~~l~~~~kDl~~~~~~a~~~g 400 (988)
....+.|+..++++.|++ .+...+.+ .... ..+.++... ..+...-++ =.+++++.++++|
T Consensus 37 ~~~l~~E~~~va~a~g~~~~~~~~~~~~~~~~~~~~~~~sSM~qD~~~gr~tEid~-----------i~G~vv~~a~~~g 105 (124)
T d1ks9a1 37 IMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTEIDY-----------INGFLLRRARAHG 105 (124)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTTCCCHHHHHHHTTCCCSGGG-----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccCCCCChHHHHHHcCCcchHHH-----------HHHHHHHHHHHhC
Confidence 456688999999999964 34433322 2211 111111111 001111111 1368999999999
Q ss_pred CCchHHHHHHHHHHHHH
Q 001973 401 VPLHISTIAHQLFLAGS 417 (988)
Q Consensus 401 i~~pi~~a~~~~~~~a~ 417 (988)
+++|..+.++++++...
T Consensus 106 i~tP~~~~l~~lik~~E 122 (124)
T d1ks9a1 106 IAVPENTRLFEMVKRKE 122 (124)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHh
Confidence 99999999999887654
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=92.57 E-value=0.068 Score=47.08 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=31.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
..||.|||.|.+|.-+|..|++.|.+|++++|.+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 4689999999999999999999999999999854
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=92.56 E-value=0.17 Score=51.92 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=35.4
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
|+++| |.|-+|.++|+.|++.|++|++.+|+.++.+++.+
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~ 67 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAE 67 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 77777 78999999999999999999999999988766543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=92.40 E-value=0.065 Score=47.10 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=31.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
..||.|||.|..|.-+|..|++.|++|+++++.+
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 3589999999999999999999999999999875
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=92.33 E-value=0.13 Score=51.94 Aligned_cols=82 Identities=21% Similarity=0.230 Sum_probs=51.3
Q ss_pred eEEEE-c-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEE--cCChHHHHHHHccc
Q 001973 148 RVGFI-G-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIM--VTNEAQAESVLYGD 223 (988)
Q Consensus 148 kIgiI-G-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~--vp~~~~~~~vl~~~ 223 (988)
|+.+| | .+-+|.++|+.|++.|++|.+.||+++..+++.+. +.+ ...++..+. +.++.+++.++
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v~~~~--- 73 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEAS-------VRE--KGVEARSYVCDVTSEEAVIGTV--- 73 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHT--TTSCEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHHH---
Confidence 45555 5 46699999999999999999999999888766542 111 012233222 35556666666
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+.+.....+=+++|+...
T Consensus 74 ~~~~~~~g~iDilVnnaG 91 (260)
T d1zema1 74 DSVVRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCCCeehhhhc
Confidence 344444434456665543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=92.24 E-value=0.28 Score=49.15 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=53.9
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEE--cCChHHHHHHHccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIM--VTNEAQAESVLYGD 223 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~--vp~~~~~~~vl~~~ 223 (988)
|+++| |.+-+|.++|..|++.|++|.+.+|++++.+++.+.- . ...++.++. +.++.+++.++
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~----~------~~~~~~~~~~Dv~~~~~v~~~~--- 73 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV----G------TPDQIQFFQHDSSDEDGWTKLF--- 73 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----C------CTTTEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----C------CCCcEEEEEccCCCHHHHHHHH---
Confidence 66777 5777999999999999999999999999887765430 0 111222222 45566666666
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+.+.+...+=+++|+...
T Consensus 74 ~~~~~~~G~iDiLVnnAg 91 (251)
T d1zk4a1 74 DATEKAFGPVSTLVNNAG 91 (251)
T ss_dssp HHHHHHHSSCCEEEECCC
T ss_pred HHHHHHhCCceEEEeccc
Confidence 444444444466776554
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.19 E-value=0.075 Score=47.17 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=30.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVY 178 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~ 178 (988)
..+|.|||.|.+|.-+|..|.+.|.+|+++.++
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 358999999999999999999999999999876
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=92.18 E-value=0.26 Score=49.59 Aligned_cols=84 Identities=24% Similarity=0.233 Sum_probs=52.3
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEE--cCChHHHHHHHccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIM--VTNEAQAESVLYGD 223 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~--vp~~~~~~~vl~~~ 223 (988)
|+.+| |.+-+|.++|..|++.|++|.+.||++++.++..+. ..+......++.+. +.++.+++.++
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-------~~~~~~~~~~~~~~~Dvt~~~~v~~~~--- 74 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAA-------VLETAPDAEVLTTVADVSDEAQVEAYV--- 74 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHCTTCCEEEEECCTTSHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhhCCCCeEEEEeccCCCHHHHHHHH---
Confidence 55555 455799999999999999999999999887765432 11111123333332 34556666665
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+.+.+...+=+++|+...
T Consensus 75 ~~~~~~~G~iDiLVnnAG 92 (258)
T d1iy8a_ 75 TATTERFGRIDGFFNNAG 92 (258)
T ss_dssp HHHHHHHSCCSEEEECCC
T ss_pred HHHHHHhCCCCEEEECCc
Confidence 344444444456666544
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.16 E-value=0.42 Score=44.76 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=54.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChhHHHHHHhcCCcccC-------CHHHHh-----ccCcEEEEEcCC
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRPTLTKFQNVGGLIAN-------SPAEAA-----KDVGVLVIMVTN 212 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~G~~~~~-------s~~e~~-----~~aDvV~l~vp~ 212 (988)
..+|.|+|+|-+|...+..++..| .+|++.|+++++.+...+.|+...- ...+.. ...|++|.++..
T Consensus 29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~ 108 (176)
T d2jhfa2 29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGR 108 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCC
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCCc
Confidence 358999999999999999999988 5899999999999999888865321 112211 246777777776
Q ss_pred hHHHHHH
Q 001973 213 EAQAESV 219 (988)
Q Consensus 213 ~~~~~~v 219 (988)
+...+..
T Consensus 109 ~~~~~~a 115 (176)
T d2jhfa2 109 LDTMVTA 115 (176)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 6554443
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=92.03 E-value=0.055 Score=54.99 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=31.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
+||.|||.|.-|...|..|+++|++|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 589999999999999999999999999999864
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=92.00 E-value=0.25 Score=50.24 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=52.5
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|+.+| |.+-+|.++|..|++.|++|.+.+|++++++++.+. .-..+..+..-+.+..+++.++ +.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~----------~~~~~~~~~~Dv~~~~~~~~~~---~~ 72 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETD----------HGDNVLGIVGDVRSLEDQKQAA---SR 72 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------cCCCeeEEecccccHHHHHHHH---HH
Confidence 45555 457899999999999999999999999988776542 1112223333345556666665 34
Q ss_pred hhhhCCCCCEEEecCC
Q 001973 226 AVSALSSGASIILSST 241 (988)
Q Consensus 226 i~~~l~~g~ivId~st 241 (988)
+.+...+=+++|+...
T Consensus 73 ~~~~~g~idilvnnAG 88 (276)
T d1bdba_ 73 CVARFGKIDTLIPNAG 88 (276)
T ss_dssp HHHHHSCCCEEECCCC
T ss_pred HHHHhCCccccccccc
Confidence 4444444456665543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.89 E-value=0.33 Score=48.36 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=34.5
Q ss_pred eEEEE-ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc
Q 001973 148 RVGFI-GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV 188 (988)
Q Consensus 148 kIgiI-G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 188 (988)
++-|. |.+-+|.++|+.|++.|++|.+.||++++++++.++
T Consensus 9 ~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~ 50 (244)
T d1pr9a_ 9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE 50 (244)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh
Confidence 44444 556799999999999999999999999998887664
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.82 E-value=0.058 Score=53.39 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=30.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~ 179 (988)
+||.|||.|.-|...|..|+++|+ +|+++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 489999999999999999999995 799999874
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=91.77 E-value=0.1 Score=46.33 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=31.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
..+|.|||.|.+|.-+|..|++.|++|++.++.+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence 4689999999999999999999999999998864
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.77 E-value=0.049 Score=55.78 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=32.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT 181 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~ 181 (988)
.+|.|||+|..|..+|..|+++|++|.+++++++.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~ 37 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD 37 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 47999999999999999999999999999998743
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=91.70 E-value=0.15 Score=45.88 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=32.2
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
...+|.|||.|.+|.-+|..|++.|++|+++++.+
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~ 68 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 68 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence 34699999999999999999999999999999865
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.59 E-value=0.063 Score=52.99 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=30.7
Q ss_pred CeEEEEccchHHHHHHHHHHhC--CCeEEEEeCChh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRS--NFTVIGYDVYRP 180 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~ 180 (988)
+||+|||.|.-|...|..|.++ ||+|++||+.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 6999999999999999999875 789999998864
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=91.51 E-value=0.22 Score=50.09 Aligned_cols=81 Identities=16% Similarity=0.055 Sum_probs=51.2
Q ss_pred eEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccch
Q 001973 148 RVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLGA 226 (988)
Q Consensus 148 kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~i 226 (988)
++-|.| .+-+|.++|+.|++.|++|.+.||++++.+++.++- -..+..+-.=+.++.+++.++ +.+
T Consensus 7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~---~~~ 73 (254)
T d1hdca_ 7 TVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----------GDAARYQHLDVTIEEDWQRVV---AYA 73 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----------GGGEEEEECCTTCHHHHHHHH---HHH
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------CCceEEEEcccCCHHHHHHHH---HHH
Confidence 444555 456999999999999999999999999887765431 112222222245556666665 344
Q ss_pred hhhCCCCCEEEecCC
Q 001973 227 VSALSSGASIILSST 241 (988)
Q Consensus 227 ~~~l~~g~ivId~st 241 (988)
.+...+=+++|+...
T Consensus 74 ~~~~g~iDilVnnAg 88 (254)
T d1hdca_ 74 REEFGSVDGLVNNAG 88 (254)
T ss_dssp HHHHSCCCEEEECCC
T ss_pred HHHcCCccEEEecCc
Confidence 444333456666543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=91.48 E-value=0.3 Score=49.11 Aligned_cols=85 Identities=11% Similarity=0.097 Sum_probs=53.1
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
+++-|.| .+-+|.++|..|++.|++|.+.+|++++.+++.+. ..+.-..+..+..=+.+..+++++. +.
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~-------~~~~~~~~~~~~~D~s~~~~~~~~~---~~ 76 (258)
T d1ae1a_ 7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI-------WREKGLNVEGSVCDLLSRTERDKLM---QT 76 (258)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCceEEEeecCCHHHHHHHH---HH
Confidence 4566666 77799999999999999999999999887765442 1111111222223345556666665 34
Q ss_pred hhhhC-CCCCEEEecCC
Q 001973 226 AVSAL-SSGASIILSST 241 (988)
Q Consensus 226 i~~~l-~~g~ivId~st 241 (988)
+.+.. .+-.++|++..
T Consensus 77 ~~~~~~g~idilinnag 93 (258)
T d1ae1a_ 77 VAHVFDGKLNILVNNAG 93 (258)
T ss_dssp HHHHTTSCCCEEEECCC
T ss_pred HHHHhCCCcEEEecccc
Confidence 44444 23456666543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.46 E-value=0.083 Score=46.80 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=31.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
.+|.|||.|..|.-+|..|++.|++|+++++++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence 589999999999999999999999999999875
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=91.43 E-value=0.2 Score=50.39 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=51.2
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEE--EcCChHHHHHHHccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI--MVTNEAQAESVLYGD 223 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l--~vp~~~~~~~vl~~~ 223 (988)
|+.+| |.+-+|.++|+.|++.|++|.+.||++++.+++.++ . ....+++ =+.+..+++.++
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~----------~--~~~~~~~~~Dv~~~~~~~~~~--- 71 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAE----------L--GERSMFVRHDVSSEADWTLVM--- 71 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----------H--CTTEEEECCCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------h--CCCeEEEEeecCCHHHHHHHH---
Confidence 56666 456799999999999999999999999988876643 1 1112222 134455566665
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+.+.....+=+++|+...
T Consensus 72 ~~~~~~~g~iDilVnnAG 89 (253)
T d1hxha_ 72 AAVQRRLGTLNVLVNNAG 89 (253)
T ss_dssp HHHHHHHCSCCEEEECCC
T ss_pred HHHHHHhCCCCeEEeccc
Confidence 344444444456666543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.35 E-value=0.83 Score=40.82 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=55.7
Q ss_pred eEEEEc-cchHHHHHHHHHHh-CCCeEE-EEeCChhHHHHHHhcCCcccCCHHHH-hccCcEEEEEcCChHHHHHHHccc
Q 001973 148 RVGFIG-LGAMGFGMATHLLR-SNFTVI-GYDVYRPTLTKFQNVGGLIANSPAEA-AKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 148 kIgiIG-~G~mG~~lA~~L~~-~G~~V~-v~dr~~~~~~~l~~~G~~~~~s~~e~-~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
||+|+| .|.||+.++..+.+ .++++. .+|+.. ++... ..++|+||=...... +.+.+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---------------~~~~~~~~~~DvvIDFS~p~~-~~~~~--- 61 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---------------PLSLLTDGNTEVVIDFTHPDV-VMGNL--- 61 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---------------CTHHHHTTTCSEEEECCCTTT-HHHHH---
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---------------chhhhccccCCEEEEcccHHH-HHHHH---
Confidence 799999 59999999998765 456744 456431 12222 246898887664433 44443
Q ss_pred cchhhhCCCCCEEEecCCCC-HHHHHHHHHHHHhcCCCceEecCc
Q 001973 224 LGAVSALSSGASIILSSTVS-PGFVSQLERRLQFEGKDLKLVDAP 267 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~-p~~~~~l~~~l~~~~~g~~~ldap 267 (988)
+.. +..|..+|..||+- ++..+.+.+.+.+. ..+..+-+|
T Consensus 62 ~~~---~~~~~~~ViGTTG~~~~~~~~l~~~~~~~-~~ipil~ap 102 (135)
T d1yl7a1 62 EFL---IDNGIHAVVGTTGFTAERFQQVESWLVAK-PNTSVLIAP 102 (135)
T ss_dssp HHH---HHTTCEEEECCCCCCHHHHHHHHHHHHSC-TTCEEEECS
T ss_pred HHH---HhcCCCEEEeccccchhHHHHHHHHHHhc-CCCCEEEcC
Confidence 122 23455666666655 55556666544321 344444444
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.33 E-value=0.079 Score=53.42 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=31.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCC-CeEEEEeCChh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN-FTVIGYDVYRP 180 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G-~~V~v~dr~~~ 180 (988)
++|.|||.|.-|..+|..|+++| ++|++++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 59999999999999999999999 59999998764
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=91.28 E-value=0.12 Score=45.41 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.4
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
..+|.|||.|.+|.-+|..|++.|.+|++..++.
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence 4689999999999999999999999999998764
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.26 E-value=0.29 Score=49.20 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=51.8
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEcCChHHHHHHHcccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDL 224 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~ 224 (988)
|+.+| |.+-+|.++|+.|++.|++|.+.||+.++++++.++ |. .+..+-.=+.++.+++.++ +
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~-----------~~~~~~~Dvt~~~~v~~~~---~ 71 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGP-----------AACAIALDVTDQASIDRCV---A 71 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCT-----------TEEEEECCTTCHHHHHHHH---H
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------ceEEEEeeCCCHHHHHHHH---H
Confidence 56666 558899999999999999999999999988776543 21 1111122234556666665 3
Q ss_pred chhhhCCCCCEEEecCC
Q 001973 225 GAVSALSSGASIILSST 241 (988)
Q Consensus 225 ~i~~~l~~g~ivId~st 241 (988)
.+.....+=+++|+...
T Consensus 72 ~~~~~~g~iDilVnnAg 88 (256)
T d1k2wa_ 72 ELLDRWGSIDILVNNAA 88 (256)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHhCCccEEEeecc
Confidence 44444444456666543
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.21 E-value=0.098 Score=46.56 Aligned_cols=33 Identities=18% Similarity=0.014 Sum_probs=31.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
.+|.|||.|.+|.-+|..|++.|.+|+++.|++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence 589999999999999999999999999999864
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.10 E-value=0.24 Score=49.66 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=51.5
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEE--EcCChHHHHHHHccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI--MVTNEAQAESVLYGD 223 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l--~vp~~~~~~~vl~~~ 223 (988)
|+.+| |.+-+|.++|+.|++.|++|.+.+|+.++.++..++ +.+.. ..+++.+ =+.++.+++.++
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------l~~~~-g~~~~~~~~Dv~~~~~v~~~~--- 74 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQK-------LTEKY-GVETMAFRCDVSNYEEVKKLL--- 74 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHH-CCCEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHHh-CCcEEEEEccCCCHHHHHHHH---
Confidence 45555 456799999999999999999999999887665431 11111 1233322 234556666665
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+.+.+...+=+++|+...
T Consensus 75 ~~~~~~~g~iDiLVnnAG 92 (251)
T d1vl8a_ 75 EAVKEKFGKLDTVVNAAG 92 (251)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 344444444466776554
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=91.06 E-value=0.07 Score=54.02 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=30.2
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
.|.|||.|.+|.++|..|++.|++|+++|++.
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 59999999999999999999999999999863
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.05 E-value=0.017 Score=57.36 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=24.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeE
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTV 172 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V 172 (988)
|||.|||.|.+|...|..|+++|++|
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v 26 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSV 26 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCc
Confidence 69999999999999999999999853
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.95 E-value=0.098 Score=55.42 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=31.5
Q ss_pred CCCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 145 SVTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 145 ~~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
+.|||-|.| .|.+|+.++..|.+.||+|+++|+.+
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 457999996 89999999999999999999998753
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.80 E-value=0.48 Score=44.20 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=52.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCccc-------CCHHHHh-----ccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLIA-------NSPAEAA-----KDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~~-------~s~~e~~-----~~aDvV~l~vp~~ 213 (988)
.+|.|+|+|-+|......+...|. .|++.++++++.+..++.|+..+ ++..+.. ..+|+||-++..+
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~~ 109 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNV 109 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCH
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCCCH
Confidence 489999999999999999988885 68888999999988888886532 1122221 2357777777665
Q ss_pred HHHHHH
Q 001973 214 AQAESV 219 (988)
Q Consensus 214 ~~~~~v 219 (988)
...+..
T Consensus 110 ~~~~~~ 115 (176)
T d2fzwa2 110 KVMRAA 115 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.76 E-value=0.1 Score=53.77 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=31.9
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
+..||.|||.|.-|..-|..|+++|++|+++..+.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34689999999999999999999999999998753
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.69 E-value=0.22 Score=51.28 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=51.1
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc-CCcccCCHHHHhccCcEEEEEc--CChHHHHHHHcc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV-GGLIANSPAEAAKDVGVLVIMV--TNEAQAESVLYG 222 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~~~s~~e~~~~aDvV~l~v--p~~~~~~~vl~~ 222 (988)
|+++| |.+-+|.++|+.|++.|++|.+.+|+.++.++..++ ...... .....++.+.+ .++.+++.++
T Consensus 13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~-----~~~~~~~~~~~Dvs~~~~v~~~~-- 85 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP-----TKQARVIPIQCNIRNEEEVNNLV-- 85 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT-----TCCCCEEEEECCTTCHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc-----ccCceEEEEeccCCCHHHHHHHH--
Confidence 56666 566799999999999999999999999887665432 000000 01234444332 4555566655
Q ss_pred ccchhhhCCCCCEEEecC
Q 001973 223 DLGAVSALSSGASIILSS 240 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~s 240 (988)
+.+.....+=+++|+..
T Consensus 86 -~~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 86 -KSTLDTFGKINFLVNNG 102 (297)
T ss_dssp -HHHHHHHSCCCEEEECC
T ss_pred -HHHHHHhCCeEEEEeec
Confidence 34444444445666543
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.37 Score=52.15 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=30.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~ 179 (988)
.||.|||+|.+|..++++|+..|. +++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 489999999999999999999997 799999764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=90.39 E-value=0.23 Score=50.09 Aligned_cols=84 Identities=10% Similarity=0.073 Sum_probs=51.2
Q ss_pred CeEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEE--cCChHHHHHHHcc
Q 001973 147 TRVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIM--VTNEAQAESVLYG 222 (988)
Q Consensus 147 ~kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~--vp~~~~~~~vl~~ 222 (988)
-|+.+| |.+-+|.++|+.|++.|++|.+.+|+.++.+++.++ ..+.. ..++..+. +.++.+++.++
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------~~~~~-g~~~~~~~~Dv~~~~~v~~~~-- 78 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEK-------VGKEF-GVKTKAYQCDVSNTDIVTKTI-- 78 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHH-------HHHHH-TCCEEEEECCTTCHHHHHHHH--
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHHh-CCceEEEEccCCCHHHHHHHH--
Confidence 366666 556699999999999999999999998877655431 10100 12232222 34555666665
Q ss_pred ccchhhhCCCCCEEEecCC
Q 001973 223 DLGAVSALSSGASIILSST 241 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st 241 (988)
+.+.+...+=+++|++..
T Consensus 79 -~~~~~~~g~iDilVnnAg 96 (260)
T d1h5qa_ 79 -QQIDADLGPISGLIANAG 96 (260)
T ss_dssp -HHHHHHSCSEEEEEECCC
T ss_pred -HHHHHHhCCCcEeccccc
Confidence 344444444455665543
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.32 E-value=0.17 Score=51.21 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=56.2
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHH-hccCcEEEE--EcCChHHHHHHHcc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEA-AKDVGVLVI--MVTNEAQAESVLYG 222 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~-~~~aDvV~l--~vp~~~~~~~vl~~ 222 (988)
|+++| |.+-+|.++|..|++.|++|.+.+|+.++.+++.++ +.+. ....++.++ =+.++.+++.++
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~~Dvt~~~~v~~~~-- 76 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQ-------ILAAGVSEQNVNSVVADVTTDAGQDEIL-- 76 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCGGGEEEEECCTTSHHHHHHHH--
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCcCceEEEEccCCCHHHHHHHH--
Confidence 78888 778999999999999999999999999887766542 0000 001123222 245666677766
Q ss_pred ccchhhhCCCCCEEEecCCC
Q 001973 223 DLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st~ 242 (988)
+.+.....+=+++|++...
T Consensus 77 -~~~~~~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 77 -STTLGKFGKLDILVNNAGA 95 (264)
T ss_dssp -HHHHHHHSCCCEEEECCC-
T ss_pred -HHHHHHhCCCCEeeccccc
Confidence 4555555555778877654
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.27 E-value=0.13 Score=44.80 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=31.5
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
..++.|||.|..|.-+|..|++.|++|+++++.+
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence 3589999999999999999999999999998864
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.18 E-value=0.32 Score=48.91 Aligned_cols=40 Identities=8% Similarity=0.116 Sum_probs=33.8
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
|+.+| |.+-+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus 9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~ 50 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLS 50 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 55555 56669999999999999999999999988877654
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.17 E-value=0.28 Score=45.91 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=59.3
Q ss_pred CeEEEEccch-HHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc------------cCCHHHHhccCcEEEEEcCCh
Q 001973 147 TRVGFIGLGA-MGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI------------ANSPAEAAKDVGVLVIMVTNE 213 (988)
Q Consensus 147 ~kIgiIG~G~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~------------~~s~~e~~~~aDvV~l~vp~~ 213 (988)
+++.|||-+. +|.+||..|.+.|..|+..+.+....... ...... .+.+.+....+|+++.+++.+
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG~p 108 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTR-GESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSE 108 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEES-CCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCT
T ss_pred CEEEEECCccccHHHHHHHHHHCCCEEEEecccccccccc-ccceeeeeeccccccccchhHHhhccccCCEEEEccCCC
Confidence 5899999775 59999999999999999988653210000 000000 122566777999999999986
Q ss_pred HHHHHHHccccchhhhCCCCCEEEecCCC
Q 001973 214 AQAESVLYGDLGAVSALSSGASIILSSTV 242 (988)
Q Consensus 214 ~~~~~vl~~~~~i~~~l~~g~ivId~st~ 242 (988)
.- .+ -..++++|.++||.+..
T Consensus 109 ~~---~i-----~~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 109 NY---KF-----PTEYIKEGAVCINFACT 129 (171)
T ss_dssp TC---CB-----CTTTSCTTEEEEECSSS
T ss_pred cc---cc-----ChhhcccCceEeecccc
Confidence 51 01 12457889999998864
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.15 E-value=0.67 Score=43.11 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=40.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~ 191 (988)
..+|.|+|+|.+|...+..++..|- +|++.|+++++.+..++.|+.
T Consensus 29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd 75 (175)
T d1cdoa2 29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT 75 (175)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred CCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc
Confidence 3589999999999999999988875 699999999999999998874
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=90.07 E-value=0.17 Score=53.09 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=33.2
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHH
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTL 182 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~ 182 (988)
+++|.|+| .|.+|+.++..|.+.||+|++..|++++.
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL 40 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence 46899998 59999999999999999999999987654
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=89.92 E-value=0.11 Score=53.37 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=30.1
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~ 179 (988)
++|.|||.|.+|.++|..|++.|+ +|+++|++.
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 589999999999999999999995 799999863
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=89.82 E-value=0.69 Score=46.50 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=51.8
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEE--EcCChHHHHHHHccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI--MVTNEAQAESVLYGD 223 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l--~vp~~~~~~~vl~~~ 223 (988)
|+.+| |.+-+|.++|+.|++.|++|.+.||+.++.+++.++- . ....+.++ =+.++.+++.++
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l----~------~~~~~~~~~~Dv~~~~~v~~~~--- 73 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI----G------SPDVISFVHCDVTKDEDVRNLV--- 73 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----C------CTTTEEEEECCTTCHHHHHHHH---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----c------CCCceEEEEccCCCHHHHHHHH---
Confidence 66666 5677999999999999999999999999887765430 0 01111111 135556666665
Q ss_pred cchhhhCCCCCEEEecCC
Q 001973 224 LGAVSALSSGASIILSST 241 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st 241 (988)
+.+.+...+=+++|++..
T Consensus 74 ~~~~~~~g~iD~lVnnAG 91 (268)
T d2bgka1 74 DTTIAKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHcCCcceeccccc
Confidence 344444444456666543
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=89.55 E-value=0.34 Score=48.07 Aligned_cols=84 Identities=11% Similarity=0.072 Sum_probs=52.9
Q ss_pred eEEEE-c-cchHHHHHHHHHHhCCCe-------EEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHH
Q 001973 148 RVGFI-G-LGAMGFGMATHLLRSNFT-------VIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAES 218 (988)
Q Consensus 148 kIgiI-G-~G~mG~~lA~~L~~~G~~-------V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~ 218 (988)
+|.+| | .+-+|.++|+.|++.|++ |.+++|++++++++.++ ..+.-..+..+-.=+.++.+++.
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~-------~~~~g~~~~~~~~Dvt~~~~v~~ 74 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE-------CRAEGALTDTITADISDMADVRR 74 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH-------HHTTTCEEEEEECCTTSHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEecCCCHHHHHH
Confidence 56666 4 466999999999999987 99999999988776542 11100111222222456666776
Q ss_pred HHccccchhhhCCCCCEEEecCC
Q 001973 219 VLYGDLGAVSALSSGASIILSST 241 (988)
Q Consensus 219 vl~~~~~i~~~l~~g~ivId~st 241 (988)
++ +.+.+...+=+++|+...
T Consensus 75 ~~---~~~~~~~g~iDilvnnAg 94 (240)
T d2bd0a1 75 LT---THIVERYGHIDCLVNNAG 94 (240)
T ss_dssp HH---HHHHHHTSCCSEEEECCC
T ss_pred HH---HHHHHHcCCcceeecccc
Confidence 66 455555545567776544
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=89.54 E-value=0.14 Score=45.39 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=31.7
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
..++.|||.|.+|.-+|..|.+.|.+|++..|++
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~ 58 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS 58 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence 4589999999999999999999999999998875
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.49 E-value=0.3 Score=49.54 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=35.9
Q ss_pred CeEEEE--ccchHHHHHHHHHHhC-CCeEEEEeCChhHHHHHHh
Q 001973 147 TRVGFI--GLGAMGFGMATHLLRS-NFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 147 ~kIgiI--G~G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~ 187 (988)
++|++| |.+-+|.++|+.|++. |+.|++++|+.++.+++.+
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~ 46 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQ 46 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence 589999 8889999999999985 8999999999988776543
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=89.47 E-value=0.79 Score=46.67 Aligned_cols=114 Identities=11% Similarity=0.015 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcc-CCchhhhccccccccC------CCCc-c--hHHHH
Q 001973 2 VNDLLEGVHLIASVEAISLGVQ------FGIHPWVLYDIISNAA-GNSWIFKNYIPNLLRG------DAKL-H--FLNAF 65 (988)
Q Consensus 2 ~nN~l~~~~~~~~aEal~la~~------~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~------~~~~-f--~l~l~ 65 (988)
+.|.+.++.+.+.+|++.|-++ +++|...+.++=+.|. -+|++++...+...+. -+.+ | .+...
T Consensus 146 l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a~~~~~~l~nl~~~~~~~~~l~~~ 225 (297)
T d2pgda1 146 IRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENC 225 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHHHHhCCCccchhhcHHHHHHHhhc
Confidence 5788999999999999999975 4889999999988776 7788887644332211 1234 4 26777
Q ss_pred HHhHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhCcCCCCCchhHHHHHHhhhcc
Q 001973 66 IQNLGIALDMAKTLAFPLPLLAVAHQQLILGLSHAHANDDNPPLVKVWENVLGV 119 (988)
Q Consensus 66 ~KDl~la~~~a~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~~~~~~~~~~~~g~ 119 (988)
.++++-+...+-+.|+|+|..+.+...|...... .-...+++..|..+|.
T Consensus 226 ~~~~r~~v~~ai~~gip~P~lssaL~y~~~~~~~----~lp~~lIQAqRD~FG~ 275 (297)
T d2pgda1 226 QDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHA----MLPANLIQAQRDYFGA 275 (297)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCS----SCTHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccC----CchhHHHHHHHHHhcC
Confidence 7788999999999999999999999888754433 2356789999998883
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.44 E-value=0.31 Score=48.81 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=55.1
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEE--EcCChHHHHHHHccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI--MVTNEAQAESVLYGD 223 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l--~vp~~~~~~~vl~~~ 223 (988)
|+.+| |.+-+|.++|+.|++.|++|.+.+|+.++.+++.+.= .+......+.++ =+.++.++++++
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l-------~~~~~~~~~~~~~~Dv~~~~~v~~~~--- 73 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAAL-------HEQFEPQKTLFIQCDVADQQQLRDTF--- 73 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TTTSCGGGEEEEECCTTSHHHHHHHH---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-------HHhcCCCcEEEEEeecCCHHHHHHHH---
Confidence 56666 5577999999999999999999999999887765420 000111223322 245666677766
Q ss_pred cchhhhCCCCCEEEecCCC
Q 001973 224 LGAVSALSSGASIILSSTV 242 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~ 242 (988)
+.+.....+=+++|+....
T Consensus 74 ~~~~~~~G~iDilVnnAg~ 92 (254)
T d2gdza1 74 RKVVDHFGRLDILVNNAGV 92 (254)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHcCCcCeecccccc
Confidence 4555544444677776644
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=89.44 E-value=0.16 Score=50.24 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=33.6
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT 181 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~ 181 (988)
...+|.|||.|.-|...|..|++.|++|++++++++-
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence 4569999999999999999999999999999987654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.27 E-value=0.47 Score=44.28 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=40.0
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGL 191 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~ 191 (988)
.+|.|+|. |.+|..........|.+|++.++++++.+.+++.|+.
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~ 75 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH 75 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccccccccCcc
Confidence 48999995 9999999998889999999999999998888887764
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=89.24 E-value=0.19 Score=47.13 Aligned_cols=46 Identities=15% Similarity=0.077 Sum_probs=40.7
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLI 192 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~ 192 (988)
.+|.|.|. |.+|......+...|.+|++.++++++.+.+++.|+..
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~ 75 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEE 75 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSE
T ss_pred CEEEEEeccccchhhhhhhhcccccccccccccccccccccccccce
Confidence 58999995 99999999988889999999999999999998888643
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.11 E-value=0.64 Score=46.33 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=51.5
Q ss_pred CeEEEEccc---hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccc
Q 001973 147 TRVGFIGLG---AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGD 223 (988)
Q Consensus 147 ~kIgiIG~G---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~ 223 (988)
+++-|-|.+ -+|.++|+.|++.|++|.+.+|+.+..+...+. .+....+..+-.=+.++.+++.++
T Consensus 9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~~~~~v~~~~--- 77 (256)
T d1ulua_ 9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKL--------AEALGGALLFRADVTQDEELDALF--- 77 (256)
T ss_dssp CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH--------HHHTTCCEEEECCTTCHHHHHHHH---
T ss_pred CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHh--------hhccCcccccccccCCHHHHHHHH---
Confidence 456666764 499999999999999999999986654433221 111112222222345566666665
Q ss_pred cchhhhCCCCCEEEecCCCCH
Q 001973 224 LGAVSALSSGASIILSSTVSP 244 (988)
Q Consensus 224 ~~i~~~l~~g~ivId~st~~p 244 (988)
+.+.+...+=+++|++....+
T Consensus 78 ~~~~~~~g~iDilVnnag~~~ 98 (256)
T d1ulua_ 78 AGVKEAFGGLDYLVHAIAFAP 98 (256)
T ss_dssp HHHHHHHSSEEEEEECCCCCC
T ss_pred HHHHHhcCCceEEEecccccc
Confidence 344444433356777665543
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.97 E-value=0.12 Score=53.29 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=31.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
.+|.|||+|..|..+|..|+++|++|++++.++.
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4799999999999999999999999999998753
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.88 E-value=0.41 Score=48.46 Aligned_cols=84 Identities=11% Similarity=0.117 Sum_probs=52.3
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHH-hccCcEEEEE--cCChHHHHHHHcc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEA-AKDVGVLVIM--VTNEAQAESVLYG 222 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~-~~~aDvV~l~--vp~~~~~~~vl~~ 222 (988)
|+.+| |.+-+|.++|+.|++.|++|.+.+|++++.+++.+. +.+. .....+..+. +.++.+++.++
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~~Dvs~~~~v~~~~-- 76 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQI-------ILKSGVSEKQVNSVVADVTTEDGQDQII-- 76 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHTTTCCGGGEEEEECCTTSHHHHHHHH--
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCCCceEEEEccCCCHHHHHHHH--
Confidence 56666 567799999999999999999999999887765542 0000 0011232222 34556666665
Q ss_pred ccchhhhCCCCCEEEecCC
Q 001973 223 DLGAVSALSSGASIILSST 241 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st 241 (988)
+.+.....+=+++|+...
T Consensus 77 -~~~~~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 77 -NSTLKQFGKIDVLVNNAG 94 (272)
T ss_dssp -HHHHHHHSCCCEEEECCC
T ss_pred -HHHHHHhCCceEEEeCCc
Confidence 344444444466666543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.80 E-value=0.71 Score=45.68 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=35.0
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhc
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNV 188 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 188 (988)
+++-|.|. +-+|.++|+.|++.|++|.+.+|+.++++++.++
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~ 48 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE 48 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 34555564 5699999999999999999999999998887654
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=88.78 E-value=0.65 Score=46.66 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=51.5
Q ss_pred CCeEEEEcc-c--hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHcc
Q 001973 146 VTRVGFIGL-G--AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYG 222 (988)
Q Consensus 146 ~~kIgiIG~-G--~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~ 222 (988)
.+++-|.|. | -+|.++|+.|++.|++|++.+|+++..+.+.+ ..+....+.+...-+.+...+++++
T Consensus 5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~--------l~~~~~~~~~~~~d~~~~~~~~~~~-- 74 (274)
T d2pd4a1 5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRP--------IAQELNSPYVYELDVSKEEHFKSLY-- 74 (274)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHH--------HHHHTTCCCEEECCTTCHHHHHHHH--
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------HHhhCCceeEeeecccchhhHHHHH--
Confidence 356777786 5 49999999999999999999998643333221 1111223444444555555555555
Q ss_pred ccchhhhCCCCCEEEecCC
Q 001973 223 DLGAVSALSSGASIILSST 241 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st 241 (988)
+.+.....+-.++|+...
T Consensus 75 -~~~~~~~g~id~lV~nag 92 (274)
T d2pd4a1 75 -NSVKKDLGSLDFIVHSVA 92 (274)
T ss_dssp -HHHHHHTSCEEEEEECCC
T ss_pred -HHHHHHcCCCCeEEeecc
Confidence 344444444445555444
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=88.63 E-value=0.14 Score=51.97 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=32.3
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhH
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPT 181 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~ 181 (988)
++||.|+|. |.+|+.++..|.++||+|++.+|++..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 469999995 999999999999999999999997543
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=88.55 E-value=0.21 Score=43.71 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=31.6
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
++|.|||.|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 5899999999999999999999999999998753
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.37 E-value=0.19 Score=46.11 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=30.7
Q ss_pred CCCeEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 001973 145 SVTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVY 178 (988)
Q Consensus 145 ~~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~ 178 (988)
+.++|-|||.|.+|..-+..|.+.|-+|+++...
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3479999999999999999999999999999643
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.34 E-value=0.32 Score=49.40 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=33.6
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
|+.+| |.+-+|.++|+.|++.|++|.+.||++++.+++.+
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~ 46 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQ 46 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 55566 55679999999999999999999999988776543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=88.27 E-value=0.39 Score=47.66 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=50.5
Q ss_pred eEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEE--EcCChHHHHHHHcccc
Q 001973 148 RVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI--MVTNEAQAESVLYGDL 224 (988)
Q Consensus 148 kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l--~vp~~~~~~~vl~~~~ 224 (988)
++-|.|. +.+|.++|+.|++.|++|++.+|+.++.+++.++- +.+++++ =+.++.++++++ +
T Consensus 7 ~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~------------~~~~~~~~~Dls~~~~i~~~~---~ 71 (241)
T d2a4ka1 7 TILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL------------EAEAIAVVADVSDPKAVEAVF---A 71 (241)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC------------CSSEEEEECCTTSHHHHHHHH---H
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc------------CCceEEEEecCCCHHHHHHHH---H
Confidence 4444454 55999999999999999999999999887765531 1122222 134555666655 4
Q ss_pred chhhhCCCCCEEEecC
Q 001973 225 GAVSALSSGASIILSS 240 (988)
Q Consensus 225 ~i~~~l~~g~ivId~s 240 (988)
.+.....+=+++|+..
T Consensus 72 ~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 72 EALEEFGRLHGVAHFA 87 (241)
T ss_dssp HHHHHHSCCCEEEEGG
T ss_pred HHHHHhCCccEecccc
Confidence 4444444456666654
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=88.14 E-value=0.22 Score=49.65 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=64.5
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhc--------CCcccCCHHHHhc--cCcEEEEEcCChHH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNV--------GGLIANSPAEAAK--DVGVLVIMVTNEAQ 215 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~--------G~~~~~s~~e~~~--~aDvV~l~vp~~~~ 215 (988)
.||.|||+|.+|+.++..|++.|. +++++|.+.=....|+.+ |-..+....+.+. ..++-+...+....
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~~~ 110 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLD 110 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhhhh
Confidence 499999999999999999999996 799999775443444332 2111112222121 34555555543221
Q ss_pred HHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcc
Q 001973 216 AESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPV 268 (988)
Q Consensus 216 ~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv 268 (988)
-... ...+....+++|++.. ......+.+.... .+..++.+.+
T Consensus 111 ~~~~-------~~~~~~~divid~~d~-~~~~~~in~~~~~--~~ip~i~g~~ 153 (247)
T d1jw9b_ 111 DAEL-------AALIAEHDLVLDCTDN-VAVRNQLNAGCFA--AKVPLVSGAA 153 (247)
T ss_dssp HHHH-------HHHHHTSSEEEECCSS-HHHHHHHHHHHHH--HTCCEEEEEE
T ss_pred hccc-------cccccccceeeeccch-hhhhhhHHHHHHH--hCCCcccccc
Confidence 1111 1223356788887755 4444555555544 3566665443
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=88.13 E-value=0.66 Score=46.13 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=49.5
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
|+.+| |.+-+|.++|+.|++.|++|.+.||+++..+...+.+. .++-.=+.+..+++.++ +.
T Consensus 6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~-------------~~~~~Dv~~~~~v~~~~---~~ 69 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGG-------------AFFQVDLEDERERVRFV---EE 69 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTC-------------EEEECCTTCHHHHHHHH---HH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC-------------eEEEEeCCCHHHHHHHH---HH
Confidence 45555 57889999999999999999999999876544333222 11212234556666665 34
Q ss_pred hhhhCCCCCEEEecCC
Q 001973 226 AVSALSSGASIILSST 241 (988)
Q Consensus 226 i~~~l~~g~ivId~st 241 (988)
+.+...+=+++|+...
T Consensus 70 ~~~~~G~iDiLVnnAG 85 (248)
T d2d1ya1 70 AAYALGRVDVLVNNAA 85 (248)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHhcCCCCeEEEeCc
Confidence 4444444456666543
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.77 E-value=0.59 Score=46.32 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=34.5
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
|+++| |.+-+|.++|+.|++.|++|++.+|+.++.+++.+
T Consensus 6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 67777 67779999999999999999999999888776544
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=87.73 E-value=0.15 Score=51.41 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=31.2
Q ss_pred CCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
+|||-|.|. |.+|+.++..|.++||+|+..||+.
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 369999997 9999999999999999999999864
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=87.63 E-value=0.25 Score=43.74 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=31.6
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
..++.|||.|.+|.-+|..|.+.|.+|++.++.+
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 4689999999999999999999999999998865
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.62 E-value=7.4 Score=37.72 Aligned_cols=171 Identities=14% Similarity=0.169 Sum_probs=92.5
Q ss_pred CCeEEEEccchHHHHHHHHHH-hCCCeEEEEe-----------CChhHHHHHHhcCCcc-------cCCHHHHhc-cCcE
Q 001973 146 VTRVGFIGLGAMGFGMATHLL-RSNFTVIGYD-----------VYRPTLTKFQNVGGLI-------ANSPAEAAK-DVGV 205 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~-~~G~~V~v~d-----------r~~~~~~~l~~~G~~~-------~~s~~e~~~-~aDv 205 (988)
.++|.|=|+|++|..+|+.|. +.|..|+..+ .+.+.+..+.+..... .-+..+... +||+
T Consensus 31 g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DI 110 (234)
T d1b26a1 31 KATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDI 110 (234)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHTSCCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccccccce
Confidence 469999999999999999997 4698877653 2344444444432111 113445554 8999
Q ss_pred EEEEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEecCcccCCcccccCCCeEEEEe
Q 001973 206 LVIMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLVDAPVSGGVKRASMGELTIMAA 285 (988)
Q Consensus 206 V~l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~ldapv~g~~~~a~~g~l~~~~g 285 (988)
++-|--......+ -.+.++ -++|+...+. |-+. +..+.|.+ +|+.|+.-.+. .. |
T Consensus 111 ~~PcA~~~~I~~~-------~a~~l~-~~~I~e~AN~-p~t~-~a~~~L~~--rgI~~~PD~~a------Na-------G 165 (234)
T d1b26a1 111 LVPAALEGAIHAG-------NAERIK-AKAVVEGANG-PTTP-EADEILSR--RGILVVPDILA------NA-------G 165 (234)
T ss_dssp EEECSCTTCBCHH-------HHTTCC-CSEEECCSSS-CBCH-HHHHHHHH--TTCEEECHHHH------TT-------H
T ss_pred eecchhcccccHH-------HHHHhh-hceEeecCCC-CCCH-HHHHHHHH--CCeEEechHHh------cC-------C
Confidence 8877544332222 223333 3566666554 3333 33455666 56766632211 01 1
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 001973 286 GTEESLKSTGSVLSALSEKLYVIKGGCGAGSGVKMANQLLAGVHIASAAEAMAFGARLGLNTRVLFNII 354 (988)
Q Consensus 286 g~~~~~~~~~~ll~~~g~~v~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~la~~~Gid~~~~~~~l 354 (988)
|- .-..-++....... .+ -..-+.+-+...+...+.+.+..+++.++++.+....+
T Consensus 166 GV---i~s~~E~~qn~~~~-~w---------~~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 221 (234)
T d1b26a1 166 GV---TVSYFEWVQDLQSF-FW---------DLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYIL 221 (234)
T ss_dssp HH---HHHHHHHHHHHTTC-CC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred Ce---eeeehhcccccchh-cc---------cHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 11 11111111111111 01 01223445555566678889999999999988776544
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.38 E-value=0.23 Score=48.28 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=30.5
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
.|.|||.|.-|...|..|+++|++|.++++++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 59999999999999999999999999999875
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.37 E-value=0.14 Score=50.36 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=30.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-------eEEEEeCChh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-------TVIGYDVYRP 180 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-------~V~v~dr~~~ 180 (988)
.||+|||.|.-|.+.|..|+++|| +|++|++.+.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 489999999999999999999984 7999998764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.32 E-value=1.2 Score=42.39 Aligned_cols=46 Identities=24% Similarity=0.184 Sum_probs=39.3
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC-eEEEEeCChhHHHHHHhcCCcc
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKFQNVGGLI 192 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~G~~~ 192 (988)
.+|.|+|+|.+|...+..+...|. .|++.|+++++.+.+++.|+..
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~ 73 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEI 73 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEE
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccE
Confidence 589999999999888887767775 7999999999999999888653
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=87.12 E-value=0.71 Score=46.26 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=29.1
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
|+.+| |.+-+|.++|+.|++.|++|.+.+|+.+
T Consensus 8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~ 42 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE 42 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 67777 6788999999999999999999999864
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=87.01 E-value=0.19 Score=51.80 Aligned_cols=35 Identities=17% Similarity=0.063 Sum_probs=32.4
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT 181 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~ 181 (988)
..|.|||+|.-|..+|..|.+.|++|++++++++-
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~i 42 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV 42 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCc
Confidence 48999999999999999999999999999998653
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=86.97 E-value=0.86 Score=45.09 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=50.0
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEE-eCChhHHHHHHhcCCcccCCHHHHhccCcEEEE--EcCChHHHHHHHcc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGY-DVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVI--MVTNEAQAESVLYG 222 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~-dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l--~vp~~~~~~~vl~~ 222 (988)
+|.+| |.+-+|.++|+.|++.|++|.+. .|+++..+++.+. ..+. ..+++++ =+.++.+++.++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~-------~~~~--g~~~~~~~~Dv~~~~~v~~~~-- 70 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQ-------IEAY--GGQAITFGGDVSKEADVEAMM-- 70 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-------HHHH--TCEEEEEECCTTSHHHHHHHH--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH-------HHHc--CCcEEEEeCCCCCHHHHHHHH--
Confidence 36666 67789999999999999999885 5677666655432 1111 1222222 244555666665
Q ss_pred ccchhhhCCCCCEEEecCC
Q 001973 223 DLGAVSALSSGASIILSST 241 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st 241 (988)
+.+.....+=+++|+...
T Consensus 71 -~~~~~~~g~iDiLVnnAg 88 (244)
T d1edoa_ 71 -KTAIDAWGTIDVVVNNAG 88 (244)
T ss_dssp -HHHHHHSSCCSEEEECCC
T ss_pred -HHHHHHcCCCCccccccc
Confidence 445554444456776543
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.67 E-value=0.3 Score=48.66 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=36.2
Q ss_pred CeEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 147 TRVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 147 ~kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
-|+.+| |.+.+|.++|+.|++.|++|.+.+|++++.+++.+
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK 48 (245)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 377888 88999999999999999999999999988776654
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=86.33 E-value=0.18 Score=50.32 Aligned_cols=41 Identities=24% Similarity=0.189 Sum_probs=35.8
Q ss_pred CeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
..|-|||.|..|...|..|+++|++|.++++++..-.++..
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~ 45 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILM 45 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEe
Confidence 47999999999999999999999999999998765555443
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=86.22 E-value=0.25 Score=49.89 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=29.5
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCC
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVY 178 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~ 178 (988)
.|.|||.|.+|...|..|+++|++|+++++.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 5899999999999999999999999999975
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=85.97 E-value=0.42 Score=49.75 Aligned_cols=31 Identities=32% Similarity=0.363 Sum_probs=28.6
Q ss_pred CeEEEE-ccchHHHHHHHHHHhCCCeEEEEeC
Q 001973 147 TRVGFI-GLGAMGFGMATHLLRSNFTVIGYDV 177 (988)
Q Consensus 147 ~kIgiI-G~G~mG~~lA~~L~~~G~~V~v~dr 177 (988)
|||-|+ |.|.+|+.++..|.+.||+|+++||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 589999 5799999999999999999999986
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=85.95 E-value=0.85 Score=45.22 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=28.2
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
|+++| |.+-+|.++|+.|++.|++|.+.||+++
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPA 40 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 56666 4567999999999999999999999864
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=85.72 E-value=0.88 Score=45.75 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=30.3
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCCh-hHHHHH
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYR-PTLTKF 185 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l 185 (988)
|+.+| |.+-+|.++|+.|+++|++|++.+++. +..+++
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~ 59 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV 59 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence 56666 588999999999999999999988774 444443
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=85.54 E-value=0.31 Score=46.55 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=29.2
Q ss_pred CeEEEEccchHHHHHHHHHHhCC--CeEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSN--FTVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G--~~V~v~dr~~ 179 (988)
|||.|||.|..|..+|..|.+.+ .+|+++++++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 69999999999999999998864 5899998764
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.87 E-value=0.32 Score=50.23 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=29.4
Q ss_pred EEEEccchHHHHHHHHHHhCCCeEEEEeCCh
Q 001973 149 VGFIGLGAMGFGMATHLLRSNFTVIGYDVYR 179 (988)
Q Consensus 149 IgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 179 (988)
|.|||.|.-|...|..|+++|++|++++++.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 8899999999999999999999999999764
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=84.87 E-value=0.87 Score=47.27 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=35.5
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
++|.|.| .|.+|+.++..|.++||+|.+..|+.++.+.+..
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~ 53 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQK 53 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHH
Confidence 5899995 6889999999999999999999999887766543
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=84.80 E-value=0.85 Score=45.58 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=49.6
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEEEeCC-hhHHHHHHhcCCcccCCHHHHhccCcEEEEE--cCChHHHHHHHcc
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIGYDVY-RPTLTKFQNVGGLIANSPAEAAKDVGVLVIM--VTNEAQAESVLYG 222 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~--vp~~~~~~~vl~~ 222 (988)
|+.+| |.+-+|.++|..|++.|++|.+.+|+ .+..+++.+. ..+. ....++++. +.++.+++.++
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~-------~~~~-~g~~~~~~~~Dv~~~~~v~~~~-- 74 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAG-------LAAQ-HGVKVLYDGADLSKGEAVRGLV-- 74 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHH-------HHHH-HTSCEEEECCCTTSHHHHHHHH--
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH-------HHHh-cCCcEEEEECCCCCHHHHHHHH--
Confidence 67777 66779999999999999999999987 4555544321 0000 122333322 34555566655
Q ss_pred ccchhhhCCCCCEEEecCC
Q 001973 223 DLGAVSALSSGASIILSST 241 (988)
Q Consensus 223 ~~~i~~~l~~g~ivId~st 241 (988)
+.+.....+=+++|+...
T Consensus 75 -~~~~~~~G~iDiLVnnAG 92 (260)
T d1x1ta1 75 -DNAVRQMGRIDILVNNAG 92 (260)
T ss_dssp -HHHHHHHSCCSEEEECCC
T ss_pred -HHHHHHhCCCcEEEeecc
Confidence 344444434456666544
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.47 E-value=1.2 Score=41.41 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=38.8
Q ss_pred CeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCC
Q 001973 147 TRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGG 190 (988)
Q Consensus 147 ~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~ 190 (988)
.+|.|.|. |.+|....+.+...|.+|.+..+++++.+.+++.|+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga 71 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV 71 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred CEEEEECCCCCcccccchhhccccccceeeecccccccccccccc
Confidence 47888885 999999999999999999999999999888887765
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=84.33 E-value=0.38 Score=44.49 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=29.9
Q ss_pred CeEEEEccchHHHHHHHHHHhCCC--eEEEEeCCh
Q 001973 147 TRVGFIGLGAMGFGMATHLLRSNF--TVIGYDVYR 179 (988)
Q Consensus 147 ~kIgiIG~G~mG~~lA~~L~~~G~--~V~v~dr~~ 179 (988)
+||.|||.|..|..+|..|.+.++ +|+++++++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 599999999999999999999885 789998776
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.29 E-value=0.73 Score=46.02 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=30.4
Q ss_pred eEEEE--ccchHHHHHHHHHHhCCCeEEE-EeCChhHHHHHH
Q 001973 148 RVGFI--GLGAMGFGMATHLLRSNFTVIG-YDVYRPTLTKFQ 186 (988)
Q Consensus 148 kIgiI--G~G~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~ 186 (988)
|+.+| |.+-+|.++|+.|++.|++|++ ++++.+..+++.
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~ 48 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVV 48 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHH
Confidence 56666 6777999999999999999987 566666555543
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.92 E-value=2.3 Score=35.50 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=62.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc--CCchhhhccccccccCCCCcchHHHHHHhHHHHHHHHHh
Q 001973 1 MVNDLLEGVHLIASVEAISLGVQFGIHPWVLYDIISNAA--GNSWIFKNYIPNLLRGDAKLHFLNAFIQNLGIALDMAKT 78 (988)
Q Consensus 1 L~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~~l~~~~--~~s~~~~~~~~~~~~~~~~~f~l~l~~KDl~la~~~a~~ 78 (988)
++.|...++.++-.-|-..++++.|+|...+.+++.... +.|+.+- .|-+ .|.=.-+-||+......+++
T Consensus 9 ~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~~~~~~~--~pG~------G~GG~ClpKD~~al~~~a~~ 80 (98)
T d1mv8a1 9 YTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYM--RPGF------AFGGSCLPKDVRALTYRASQ 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTTTSSTTC--SCCS------CCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcccccccccc--CCcc------cCCccccchhHHHHHHHHHH
Confidence 367999999999999999999999999999999986432 1122110 0111 13334567999999999999
Q ss_pred cCCCCcHHHHHHHH
Q 001973 79 LAFPLPLLAVAHQQ 92 (988)
Q Consensus 79 ~g~~~p~~~~~~~~ 92 (988)
.|++.++...+.+.
T Consensus 81 ~~~~~~ll~~~~~~ 94 (98)
T d1mv8a1 81 LDVEHPMLGSLMRS 94 (98)
T ss_dssp TTCCCTTGGGHHHH
T ss_pred cCCChHHHHHHHHH
Confidence 99999988776653
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=83.71 E-value=0.52 Score=48.96 Aligned_cols=39 Identities=31% Similarity=0.556 Sum_probs=32.3
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCCC-eEEEEeCChhHHHHH
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSNF-TVIGYDVYRPTLTKF 185 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l 185 (988)
|||-|.| .|.+|+.++..|.+.|| +|++.|+.......+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~ 41 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF 41 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhh
Confidence 5898885 59999999999999995 899999876655444
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=83.64 E-value=1 Score=44.59 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=27.9
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEe
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYD 176 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~d 176 (988)
.++|.|=|.|++|+.+|+.|.+.|.+|+..+
T Consensus 31 g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs 61 (242)
T d1v9la1 31 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS 61 (242)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence 3699999999999999999999999987654
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=83.60 E-value=0.38 Score=47.47 Aligned_cols=34 Identities=24% Similarity=0.112 Sum_probs=31.4
Q ss_pred eEEEEccchHHHHHHHHHHhCCCeEEEEeCChhH
Q 001973 148 RVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPT 181 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~ 181 (988)
.|.|||.|..|...|..|+++|++|.++++++..
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5999999999999999999999999999987643
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.34 E-value=0.27 Score=48.45 Aligned_cols=66 Identities=15% Similarity=0.021 Sum_probs=45.0
Q ss_pred CeEEEEc-cchHHHHHHHHHHhCC--CeEEEEeCChhHHHHHHhcCCc-------ccCCHHHHhccCcEEEEEcCC
Q 001973 147 TRVGFIG-LGAMGFGMATHLLRSN--FTVIGYDVYRPTLTKFQNVGGL-------IANSPAEAAKDVGVLVIMVTN 212 (988)
Q Consensus 147 ~kIgiIG-~G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~G~~-------~~~s~~e~~~~aDvV~l~vp~ 212 (988)
++|-|.| +|.+|+.+.+.|.+.| ++|++++|++.....-....+. -.++..++++++|++|.|+..
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~ 90 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT 90 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence 5899995 7999999999999999 4899999976543221111111 123455566777887777654
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.26 E-value=1.2 Score=44.68 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=34.0
Q ss_pred CeEEEEccc-hHHHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 001973 147 TRVGFIGLG-AMGFGMATHLLRSNFTVIGYDVYRPTLTKFQN 187 (988)
Q Consensus 147 ~kIgiIG~G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 187 (988)
+++-|.|.+ -+|.++|+.|++.|++|.+.+|+.++.+++.+
T Consensus 15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 355555554 59999999999999999999999999887654
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=83.23 E-value=0.45 Score=47.29 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=28.9
Q ss_pred CeEEEE--ccchHHHHHHHHHHhCCCeEEEEeCChh
Q 001973 147 TRVGFI--GLGAMGFGMATHLLRSNFTVIGYDVYRP 180 (988)
Q Consensus 147 ~kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr~~~ 180 (988)
|||.+| |.+-+|.++|+.|++.|++|.+.||+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 477666 4677999999999999999999998753
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.94 E-value=1.6 Score=44.10 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=64.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEe-----------CChhHHHHHHhcCCccc------CCHHHHh-ccCcEEE
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYD-----------VYRPTLTKFQNVGGLIA------NSPAEAA-KDVGVLV 207 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~d-----------r~~~~~~~l~~~G~~~~------~s~~e~~-~~aDvV~ 207 (988)
.++|.|=|.|++|...|..|.+.|..|+..+ .+.+.+.++........ -+..+.. .+||+++
T Consensus 36 gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~DIli 115 (293)
T d1hwxa1 36 DKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILI 115 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCccEEe
Confidence 4689999999999999999999999987654 45566666554422111 1112233 4899998
Q ss_pred EEcCChHHHHHHHccccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEe
Q 001973 208 IMVTNEAQAESVLYGDLGAVSALSSGASIILSSTVSPGFVSQLERRLQFEGKDLKLV 264 (988)
Q Consensus 208 l~vp~~~~~~~vl~~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~~~~g~~~l 264 (988)
-|--. .++. .+-.+.+ .-++|+...+. |-+. +-.+.+.+ +|+.|+
T Consensus 116 PaA~~-----~~I~--~~~a~~l-~ak~I~EgAN~-P~t~-eA~~~L~~--~gI~vi 160 (293)
T d1hwxa1 116 PAASE-----KQLT--KSNAPRV-KAKIIAEGANG-PTTP-QADKIFLE--RNIMVI 160 (293)
T ss_dssp ECSSS-----SCBC--TTTGGGC-CCSEEECCSSS-CBCH-HHHHHHHH--TTCEEE
T ss_pred ecccc-----cccc--HHHHHHH-hhCEEeccCCC-CCCc-chHHHHHH--CCCEEe
Confidence 77543 2332 1223334 23566655544 4433 33456666 566665
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=82.75 E-value=1.7 Score=37.47 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=76.0
Q ss_pred CCCeEEEEcc-chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhc--cCcEEEEEcCChHHHHHHHc
Q 001973 145 SVTRVGFIGL-GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAK--DVGVLVIMVTNEAQAESVLY 221 (988)
Q Consensus 145 ~~~kIgiIG~-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~--~aDvV~l~vp~~~~~~~vl~ 221 (988)
+..||-|-|. |.-|+..+..+.+-|-+|. -..+|.+.-+- ..|+.+.++..|+.+ ++|.-++.||.+...+.++
T Consensus 5 k~trVlvQGiTG~~G~~ht~~m~~yGT~vV-aGVtPgkgG~~-~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~- 81 (119)
T d2nu7a1 5 KNTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTT-HLGLPVFNTVREAVAATGATASVIYVPAPFCKDSIL- 81 (119)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTEE-ETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHH-
T ss_pred CCCcEEEEcCCCcHHHHHHHHHHHhCCceE-EEEccCCCCcc-cCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHH-
Confidence 3469999998 9999999999999998865 33445442111 136788999999876 6899999999988777776
Q ss_pred cccchhhhCCCCCEEEecCCCCHHHHHHHHHHHHh
Q 001973 222 GDLGAVSALSSGASIILSSTVSPGFVSQLERRLQF 256 (988)
Q Consensus 222 ~~~~i~~~l~~g~ivId~st~~p~~~~~l~~~l~~ 256 (988)
+.+-..+ ..+++.+-.+++....++.+.+..
T Consensus 82 --EAi~agI--~~iV~ITEgIP~~D~~~i~~~~~~ 112 (119)
T d2nu7a1 82 --EAIDAGI--KLIITITEGIPTLDMLTVKVKLDE 112 (119)
T ss_dssp --HHHHTTC--SEEEECCCCCCHHHHHHHHHHHHH
T ss_pred --HHHHCCC--CEEEEecCCCCHHHHHHHHHHHhh
Confidence 3333333 345566667777888888777765
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=82.48 E-value=0.5 Score=49.28 Aligned_cols=37 Identities=32% Similarity=0.320 Sum_probs=33.3
Q ss_pred CCeEEEEc-cchHHHHHHHHHHhCCCeEEEEeCChhHH
Q 001973 146 VTRVGFIG-LGAMGFGMATHLLRSNFTVIGYDVYRPTL 182 (988)
Q Consensus 146 ~~kIgiIG-~G~mG~~lA~~L~~~G~~V~v~dr~~~~~ 182 (988)
.+||-|.| .|.+|+.++..|.++||+|++++|+..+.
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~ 45 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV 45 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcc
Confidence 46999998 89999999999999999999999986654
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=81.97 E-value=0.42 Score=49.57 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=29.9
Q ss_pred eEEEEccchHHHHHHHHHH-----hCCCeEEEEeCChh
Q 001973 148 RVGFIGLGAMGFGMATHLL-----RSNFTVIGYDVYRP 180 (988)
Q Consensus 148 kIgiIG~G~mG~~lA~~L~-----~~G~~V~v~dr~~~ 180 (988)
.|.|||.|..|..+|..|+ ++|++|+++++++.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 6999999999999999996 58999999998753
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=81.24 E-value=2.1 Score=42.13 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=30.4
Q ss_pred CeEEEEccc---hHHHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 001973 147 TRVGFIGLG---AMGFGMATHLLRSNFTVIGYDVYRPTLTKF 185 (988)
Q Consensus 147 ~kIgiIG~G---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 185 (988)
++|-|.|.+ -+|.++|+.|++.|++|++.+|+.+..+.+
T Consensus 6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 456666654 388999999999999999999986654443
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=81.20 E-value=0.83 Score=45.44 Aligned_cols=79 Identities=13% Similarity=0.092 Sum_probs=54.8
Q ss_pred CCeEEEEccchHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCChHHHHHHHccccc
Q 001973 146 VTRVGFIGLGAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNEAQAESVLYGDLG 225 (988)
Q Consensus 146 ~~kIgiIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~~~~~~vl~~~~~ 225 (988)
..||++||. + +....+.+.|.+++++||++. .|........+++.+||+||++-.+ -+...+ +.
T Consensus 122 g~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~-------~gd~p~~~~~~lLp~aD~viiTGsT--lvN~Tl---~~ 185 (251)
T d2h1qa1 122 GKKVGVVGH--F--PHLESLLEPICDLSILEWSPE-------EGDYPLPASEFILPECDYVYITCAS--VVDKTL---PR 185 (251)
T ss_dssp TSEEEEESC--C--TTHHHHHTTTSEEEEEESSCC-------TTCEEGGGHHHHGGGCSEEEEETHH--HHHTCH---HH
T ss_pred CCEEEEEec--c--hhHHHHHhcCCcEEEEeCCCC-------CCCCCchHHHHhhhcCCEEEEEech--hhcCCH---HH
Confidence 369999975 5 677888899999999999974 2444445567889999999987532 233333 45
Q ss_pred hhhhCCCCCEEEecC
Q 001973 226 AVSALSSGASIILSS 240 (988)
Q Consensus 226 i~~~l~~g~ivId~s 240 (988)
++.+.++...+|...
T Consensus 186 LL~~~~~a~~vvl~G 200 (251)
T d2h1qa1 186 LLELSRNARRITLVG 200 (251)
T ss_dssp HHHHTTTSSEEEEES
T ss_pred HHHhCCcCCEEEEEC
Confidence 666666665555443
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=80.61 E-value=2.6 Score=42.04 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=31.2
Q ss_pred CeEEEE--ccchHHHHHHHHHHhCCCeEEEEeC-ChhHHHHHH
Q 001973 147 TRVGFI--GLGAMGFGMATHLLRSNFTVIGYDV-YRPTLTKFQ 186 (988)
Q Consensus 147 ~kIgiI--G~G~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~l~ 186 (988)
|.|+|| |.+-+|.++|+.|++.|++|.+.++ +.+..+.+.
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~ 44 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS 44 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence 468888 5678999999999999999988654 555555544
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=80.41 E-value=9.7 Score=33.70 Aligned_cols=103 Identities=11% Similarity=-0.059 Sum_probs=63.1
Q ss_pred eEEEE---cc---chHHHHHHHHHHhCCCeEEEEeCChhHHHHHHhcCCcccCCHHHHhccCcEEEEEcCCh-----HHH
Q 001973 148 RVGFI---GL---GAMGFGMATHLLRSNFTVIGYDVYRPTLTKFQNVGGLIANSPAEAAKDVGVLVIMVTNE-----AQA 216 (988)
Q Consensus 148 kIgiI---G~---G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~aDvV~l~vp~~-----~~~ 216 (988)
||.|| .. -.|...++..|.+.|++|.++|.+....+.. ...+.++|.|++..|+. ..+
T Consensus 4 Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~~-----------~~~l~~~d~vi~Gspt~~~~~~~~~ 72 (152)
T d1e5da1 4 KVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQI-----------MSEISDAGAVIVGSPTHNNGILPYV 72 (152)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHH-----------HHHHHTCSEEEEECCCBTTBCCHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhhh-----------ccchhhCCEEEEeccccCCccCchh
Confidence 56666 22 3467778888999999999998764332221 22356899999999984 345
Q ss_pred HHHHccccchhhhCCCCCEEEecC--CCCHHHHHHHHHHHHhcCCCceEecC
Q 001973 217 ESVLYGDLGAVSALSSGASIILSS--TVSPGFVSQLERRLQFEGKDLKLVDA 266 (988)
Q Consensus 217 ~~vl~~~~~i~~~l~~g~ivId~s--t~~p~~~~~l~~~l~~~~~g~~~lda 266 (988)
+..+ ..+...-.+++.+.-.+ .........+.+.+.+ .|+..+..
T Consensus 73 ~~~l---~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~--~g~~~v~~ 119 (152)
T d1e5da1 73 AGTL---QYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTG--MGFDMPAT 119 (152)
T ss_dssp HHHH---HHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHH--TTCBCCSC
T ss_pred HHHH---HHhhccCCCCCEEEEEEeeCCCCccHHHHHHHHHH--CCCEEecC
Confidence 5555 22222223455443333 2345566778888877 45665543
|