Citrus Sinensis ID: 001978
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 987 | 2.2.26 [Sep-21-2011] | |||||||
| P59015 | 974 | Vacuolar protein sorting- | yes | no | 0.895 | 0.907 | 0.343 | 1e-149 | |
| Q9P253 | 973 | Vacuolar protein sorting- | yes | no | 0.890 | 0.903 | 0.341 | 1e-136 | |
| Q8R307 | 973 | Vacuolar protein sorting- | yes | no | 0.883 | 0.896 | 0.343 | 1e-134 | |
| Q24314 | 1002 | Vacuolar protein sorting- | yes | no | 0.854 | 0.841 | 0.286 | 8e-92 | |
| O74925 | 900 | Vacuolar membrane protein | yes | no | 0.824 | 0.904 | 0.255 | 5e-73 | |
| P27801 | 918 | Vacuolar membrane protein | yes | no | 0.682 | 0.734 | 0.237 | 1e-56 |
| >sp|P59015|VPS18_DANRE Vacuolar protein sorting-associated protein 18 homolog OS=Danio rerio GN=vps18 PE=2 SV=2 | Back alignment and function desciption |
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Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust.
Identities = 337/980 (34%), Positives = 537/980 (54%), Gaps = 96/980 (9%)
Query: 24 ITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT 83
I S N+ + + K L+R D G D + + GR + +H++F+DP GSH +
Sbjct: 57 INQFSVCNNQLCMSLGKDTLLRIDLGKPDQPN-QIELGRKDDSKVHRLFLDPTGSHLVIC 115
Query: 84 IVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143
+ + E Y + K R LS+ +G ++ ++ WN+ +E +T I++GT G + E
Sbjct: 116 LTTN---ECVYLNRNTQKVRGLSRWRGHLIESIGWNKLIGSETNTGPILVGTSQGIIFEA 172
Query: 144 AVDEKD------KREKYIKLLFELNE--LPEAFMGLQMETASLSNGTRYYVMAVTPTRLY 195
+ + ++Y + + L E P L++E T+Y+++A T RL+
Sbjct: 173 EISASEGSLFNTNPDQYFRQVHYLEEDGKPAPVCCLEVERGL---ETKYFIIATTRKRLF 229
Query: 196 SFTGF---GS----LDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRA--VHFAWLSG 246
F G GS ++FA D F E P + SE+ F+ + R+ FAW+ G
Sbjct: 230 QFVGKLAEGSEQQGFSSIFAQNQDLLPSFQEFPVNMGYSEITFYTSKLRSRPKTFAWMMG 289
Query: 247 AGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEA-----VKPGSMAVSEYHFL 301
G+ +G L++ V +LLS ++ E + VKP S+ ++++HFL
Sbjct: 290 NGVLYGQLDY-------------VRPDSLLSDVQVWEYTQDIDLNFVKPISIVLTQFHFL 336
Query: 302 LLMGNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVN 361
LL+ ++V+ + ++ Q++ E F + ++ + I D G+ + Y + ++F+ +
Sbjct: 337 LLLPDRVRGICTLNGQVVHEDVFPEKFGTLQKMI----KDPITGLVWIYTEKAVFRYHIQ 392
Query: 362 DEGRDMWKVYLDMKEYAAALANCRD-PLQRDQVYLVQAEAAFATKDFHRAASFYAKI-NY 419
E RD+W++Y++M ++ A C+D P D V +AE F K + +A YA NY
Sbjct: 393 KEARDVWQMYMNMNKFDLAKEYCKDRPECLDMVLAKEAEHCFQNKRYLESAKCYALTQNY 452
Query: 420 ILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLE 479
FEEI LKFI +++AL+ FL++KL NL +K QIT++ TW TELYL+++ +L
Sbjct: 453 ---FEEIALKFIEAKQEEALKEFLIKKLVNLKPSEKTQITLLVTWLTELYLNRLGQL--- 506
Query: 480 DDTALENRSSEYQSIMREFRAFLSDCK--DVL--DEATTMKLLESYGRVEELVFFASLKE 535
A E + + EFR FL K D + +T LL S+G V+ +V+F+ + +
Sbjct: 507 --EADEGKQHLFLETREEFRTFLKSPKHKDCFYNNRSTIYDLLASHGDVDNMVYFSVIMQ 564
Query: 536 QHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNN-LNP 594
+E V+ HY Q + AL +L K L YKF+P L+ + V++W+ N L+P
Sbjct: 565 DYERVISHYCQHDDYSAALDVLSK-HCDDKLFYKFSPVLMQHIPKKVVDAWIQMGNRLDP 623
Query: 595 RKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLR 654
+ LIPA++ YS + + + +E I+Y+EFCV+ L ++ +HN LLSLYAK + D ALL
Sbjct: 624 KNLIPALVNYS-QMGSMQQINETIRYMEFCVYELDVKEEAIHNYLLSLYAKHKPD-ALLW 681
Query: 655 FLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDPEL 714
+L+ + + + YD KYALRLC + ++ACV +Y +M ++EEAV LAL+VD +L
Sbjct: 682 YLE----QAGTHVSDIHYDLKYALRLCSEHGYLQACVLVYKIMELYEEAVDLALKVDVDL 737
Query: 715 AMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPF 774
A + AD EDDE+LRKKLWL +A+HV+++EK +++KA+ L + LLKIEDILPF
Sbjct: 738 AKSCADLPEDDEELRKKLWLKIARHVVQEEK-----DVKKAMNCLSSCN-LLKIEDILPF 791
Query: 775 FPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDE 834
FPDF ID FKEAICSSL++YNK IE+LKQEM +AT A IR DI + +Y V++ E
Sbjct: 792 FPDFVTIDHFKEAICSSLEEYNKHIEELKQEMEEATESAKRIREDIQEMRNKYGVVESQE 851
Query: 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNETQAEY 894
C C +L PFY+F CGH FH CL+ V + +
Sbjct: 852 KCATCDFPLL-----------------NRPFYLFLCGHMFHYDCLLQEVIPHLSVYKQNK 894
Query: 895 ILDLQKQLTLLGSEARKDANGVTTEDSIT---SMTPTDKLRSQLDDAIASECPFCGDLMI 951
+ +LQK+L ++ K + ED+++ ++++S +DD IA EC +CG+LMI
Sbjct: 895 LDELQKKLA-ATTQTTKARHKPREEDTVSLGKGQGSREQIKSDIDDIIACECVYCGELMI 953
Query: 952 REISLPFIAPEEAHQ-FASW 970
+ I PFI P++ Q +SW
Sbjct: 954 KSIDKPFIDPQKFDQEMSSW 973
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May play a role in vesicle-mediated protein trafficking to lysosomal compartments and in membrane docking/fusion reactions of late endosomes/lysosomes. May be involved in vesicle trafficking to the hepatocyte apical membrane and play a role in development of the intra-hepatic biliary tree. May target endosomes to the pigment granule in melanocytes. Essential for early embryonic development. Danio rerio (taxid: 7955) |
| >sp|Q9P253|VPS18_HUMAN Vacuolar protein sorting-associated protein 18 homolog OS=Homo sapiens GN=VPS18 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8R307|VPS18_MOUSE Vacuolar protein sorting-associated protein 18 homolog OS=Mus musculus GN=Vps18 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q24314|VPS18_DROME Vacuolar protein sorting-associated protein 18 homolog OS=Drosophila melanogaster GN=dor PE=1 SV=3 | Back alignment and function description |
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| >sp|O74925|PEP3_SCHPO Vacuolar membrane protein pep3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pep3 PE=3 SV=1 | Back alignment and function description |
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| >sp|P27801|PEP3_YEAST Vacuolar membrane protein PEP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEP3 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 987 | ||||||
| 255553905 | 987 | vacuolar membrane protein pep3, putative | 1.0 | 1.0 | 0.885 | 0.0 | |
| 225447639 | 986 | PREDICTED: vacuolar protein sorting-asso | 0.998 | 1.0 | 0.881 | 0.0 | |
| 356549956 | 990 | PREDICTED: vacuolar protein sorting-asso | 0.997 | 0.994 | 0.853 | 0.0 | |
| 449438056 | 989 | PREDICTED: vacuolar protein sorting-asso | 0.998 | 0.996 | 0.847 | 0.0 | |
| 334182501 | 988 | zinc ion binding protein [Arabidopsis th | 1.0 | 0.998 | 0.831 | 0.0 | |
| 297844112 | 1006 | T12C24.2 [Arabidopsis lyrata subsp. lyra | 1.0 | 0.981 | 0.818 | 0.0 | |
| 9502367 | 1010 | T12C24.2 [Arabidopsis thaliana] | 1.0 | 0.977 | 0.798 | 0.0 | |
| 8778633 | 1063 | F5O11.22 [Arabidopsis thaliana] | 0.996 | 0.925 | 0.747 | 0.0 | |
| 440583708 | 1054 | similar to vacuolar protein sorting-asso | 0.935 | 0.875 | 0.826 | 0.0 | |
| 242078359 | 995 | hypothetical protein SORBIDRAFT_07g00494 | 0.979 | 0.971 | 0.747 | 0.0 |
| >gi|255553905|ref|XP_002517993.1| vacuolar membrane protein pep3, putative [Ricinus communis] gi|223542975|gb|EEF44511.1| vacuolar membrane protein pep3, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1855 bits (4804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 874/987 (88%), Positives = 934/987 (94%)
Query: 1 MDLMRQVFQVDVLERYAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSA 60
M+ RQVF VD+LERYAAKGRGVITCM+AGNDVIV+GTSKGW+IRHDFG GDSYDIDLSA
Sbjct: 1 MEQGRQVFTVDLLERYAAKGRGVITCMAAGNDVIVIGTSKGWVIRHDFGVGDSYDIDLSA 60
Query: 61 GRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNR 120
GR GEQ IH+VFVDPGGSHCIAT+VG GGAET+YTHAKWSKPRVL+KLKGLVVNAVAWNR
Sbjct: 61 GRGGEQCIHRVFVDPGGSHCIATVVGGGGAETYYTHAKWSKPRVLTKLKGLVVNAVAWNR 120
Query: 121 QQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180
Q ITEASTKE+ILGTD GQLHE+AVDEKDKREKY+K LF+LNELPEAFMGLQMETA+LSN
Sbjct: 121 QSITEASTKEVILGTDNGQLHEIAVDEKDKREKYVKFLFQLNELPEAFMGLQMETANLSN 180
Query: 181 GTRYYVMAVTPTRLYSFTGFGSLDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRAVH 240
GTRYYVMAVTPTRLYSFTG GSL+TVFA YL+RAVHFMELPGEILNSELHFFIKQRRAVH
Sbjct: 181 GTRYYVMAVTPTRLYSFTGIGSLETVFAGYLERAVHFMELPGEILNSELHFFIKQRRAVH 240
Query: 241 FAWLSGAGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHF 300
FAWLSGAGIYHGGLNFGAQ S PNGDENFVENKALL YSKLSEGA A+KP SMAVSE+HF
Sbjct: 241 FAWLSGAGIYHGGLNFGAQHSYPNGDENFVENKALLDYSKLSEGAGAIKPTSMAVSEFHF 300
Query: 301 LLLMGNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSV 360
LLL+GNKVKVVNRISEQIIEEL+FDQTS+S+SR IIGLCSDATAG+FYAYDQNSIFQVSV
Sbjct: 301 LLLIGNKVKVVNRISEQIIEELRFDQTSESVSRDIIGLCSDATAGLFYAYDQNSIFQVSV 360
Query: 361 NDEGRDMWKVYLDMKEYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKINYI 420
NDEGRDMWKVYLDMKEYAAALANCRDP QRDQVYL+QA+AAFA++DF RAASFYAK+NY+
Sbjct: 361 NDEGRDMWKVYLDMKEYAAALANCRDPFQRDQVYLLQADAAFASRDFLRAASFYAKVNYM 420
Query: 421 LSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLED 480
LSFEEITLKFIS SEQDALRTFLLRKLDNL KDDKCQITMISTWATELYLDKINR+LLE+
Sbjct: 421 LSFEEITLKFISASEQDALRTFLLRKLDNLMKDDKCQITMISTWATELYLDKINRMLLEE 480
Query: 481 DTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIV 540
D A E+RSSEYQSI++EFRAFLSD KDVLDEATTM+LL+ GRVEELV+FASLKEQ+EIV
Sbjct: 481 DNASEDRSSEYQSIIQEFRAFLSDSKDVLDEATTMRLLKGSGRVEELVYFASLKEQYEIV 540
Query: 541 VHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNNLNPRKLIPA 600
+ HYI+QGEAKKAL++L+KPAVPIDLQYKFAPDLI LDAYETVESWM T NLNPRKLIPA
Sbjct: 541 IDHYIEQGEAKKALEVLQKPAVPIDLQYKFAPDLIALDAYETVESWMVTKNLNPRKLIPA 600
Query: 601 MMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKF 660
MMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPG+HNLLLSLYAKQEDD ALLRFLQCKF
Sbjct: 601 MMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGIHNLLLSLYAKQEDDGALLRFLQCKF 660
Query: 661 GKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDPELAMAEAD 720
GKGRENGP+FFYDPKYALRLCL EKRMRACVHIY MMSMHEEAVALALQVDPELAMAEAD
Sbjct: 661 GKGRENGPDFFYDPKYALRLCLIEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEAD 720
Query: 721 KVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL 780
KVEDDEDLRKKLWLM+AKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
Sbjct: 721 KVEDDEDLRKKLWLMIAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL 780
Query: 781 IDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCR 840
IDDFKEAICSSL+DYNKQIEQLK+EMNDATHGADNIRNDISALAQRYAVIDRDE+CG C+
Sbjct: 781 IDDFKEAICSSLEDYNKQIEQLKEEMNDATHGADNIRNDISALAQRYAVIDRDEECGACK 840
Query: 841 RKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNETQAEYILDLQK 900
RKIL+ G DYRM+RGY SVGPMAPFYVFPCGHAFHA CLIAHVT+CT +TQAEYILDLQK
Sbjct: 841 RKILIVGGDYRMSRGYTSVGPMAPFYVFPCGHAFHAHCLIAHVTRCTTDTQAEYILDLQK 900
Query: 901 QLTLLGSEARKDANGVTTEDSITSMTPTDKLRSQLDDAIASECPFCGDLMIREISLPFIA 960
QLTLLG A KD NG TE+SITS+TP DKLRSQLDDAIASECPFCG+LMI EISLPFI
Sbjct: 901 QLTLLGDGAGKDLNGSITEESITSITPVDKLRSQLDDAIASECPFCGELMINEISLPFIL 960
Query: 961 PEEAHQFASWEIKPQNLGNHRSLSLPV 987
PEEA Q +SWEIKP NLG+ R+LSLPV
Sbjct: 961 PEEAQQVSSWEIKPHNLGSQRTLSLPV 987
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447639|ref|XP_002271384.1| PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Vitis vinifera] gi|296084966|emb|CBI28381.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356549956|ref|XP_003543356.1| PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Glycine max] | Back alignment and taxonomy information |
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| >gi|449438056|ref|XP_004136806.1| PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|334182501|ref|NP_172709.2| zinc ion binding protein [Arabidopsis thaliana] gi|332190766|gb|AEE28887.1| zinc ion binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297844112|ref|XP_002889937.1| T12C24.2 [Arabidopsis lyrata subsp. lyrata] gi|297335779|gb|EFH66196.1| T12C24.2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|9502367|gb|AAF88074.1|AC025417_2 T12C24.2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|8778633|gb|AAF79641.1|AC025416_15 F5O11.22 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|440583708|emb|CCH47212.1| similar to vacuolar protein sorting-associated protein [Lupinus angustifolius] | Back alignment and taxonomy information |
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| >gi|242078359|ref|XP_002443948.1| hypothetical protein SORBIDRAFT_07g004940 [Sorghum bicolor] gi|241940298|gb|EES13443.1| hypothetical protein SORBIDRAFT_07g004940 [Sorghum bicolor] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 987 | ||||||
| ZFIN|ZDB-GENE-020419-33 | 974 | vps18 "vacuolar protein sortin | 0.786 | 0.796 | 0.352 | 1.2e-166 | |
| UNIPROTKB|F1SSU6 | 973 | VPS18 "Uncharacterized protein | 0.782 | 0.793 | 0.350 | 1.9e-155 | |
| UNIPROTKB|Q9P253 | 973 | VPS18 "Vacuolar protein sortin | 0.786 | 0.797 | 0.347 | 1.3e-154 | |
| UNIPROTKB|A6QR33 | 973 | VPS18 "VPS18 protein" [Bos tau | 0.787 | 0.798 | 0.345 | 1.7e-154 | |
| UNIPROTKB|E2RAT8 | 973 | VPS18 "Uncharacterized protein | 0.786 | 0.797 | 0.347 | 5.6e-154 | |
| MGI|MGI:2443626 | 973 | Vps18 "vacuolar protein sortin | 0.786 | 0.797 | 0.348 | 1.9e-153 | |
| RGD|1311556 | 973 | Vps18 "vacuolar protein sortin | 0.786 | 0.797 | 0.351 | 2.4e-153 | |
| DICTYBASE|DDB_G0269924 | 1077 | vps18 "7-fold repeat in clathr | 0.742 | 0.680 | 0.340 | 1.8e-129 | |
| ASPGD|ASPL0000051037 | 963 | digA [Emericella nidulans (tax | 0.799 | 0.819 | 0.318 | 1.8e-118 | |
| UNIPROTKB|E1BSK2 | 974 | VPS18 "Uncharacterized protein | 0.788 | 0.798 | 0.356 | 3.8e-117 |
| ZFIN|ZDB-GENE-020419-33 vps18 "vacuolar protein sorting protein 18" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Score = 1234 (439.4 bits), Expect = 1.2e-166, Sum P(2) = 1.2e-166
Identities = 296/840 (35%), Positives = 475/840 (56%)
Query: 24 ITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT 83
I S N+ + + K L+R D G D + + GR + +H++F+DP GSH +
Sbjct: 57 INQFSVCNNQLCMSLGKDTLLRIDLGKPDQPN-QIELGRKDDSKVHRLFLDPTGSHLVIC 115
Query: 84 IVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143
+ + E Y + K R LS+ +G ++ ++ WN+ +E +T I++GT G + E
Sbjct: 116 LTTN---ECVYLNRNTQKVRGLSRWRGHLIESIGWNKLIGSETNTGPILVGTSQGIIFEA 172
Query: 144 AVDEKD------KREKYIKLLFELNE--LPEAFMGLQMETASLSNGTRYYVMAVTPTRLY 195
+ + ++Y + + L E P L++E L T+Y+++A T RL+
Sbjct: 173 EISASEGSLFNTNPDQYFRQVHYLEEDGKPAPVCCLEVERG-LE--TKYFIIATTRKRLF 229
Query: 196 SFTGF---GS----LDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRA--VHFAWLSG 246
F G GS ++FA D F E P + SE+ F+ + R+ FAW+ G
Sbjct: 230 QFVGKLAEGSEQQGFSSIFAQNQDLLPSFQEFPVNMGYSEITFYTSKLRSRPKTFAWMMG 289
Query: 247 AGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLMGN 306
G+ +G L++ P ++ + + + Y++ + VKP S+ ++++HFLLL+ +
Sbjct: 290 NGVLYGQLDY----VRP---DSLLSDVQVWEYTQDID-LNFVKPISIVLTQFHFLLLLPD 341
Query: 307 KVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRD 366
+V+ + ++ Q++ E F + ++ + I D G+ + Y + ++F+ + E RD
Sbjct: 342 RVRGICTLNGQVVHEDVFPEKFGTLQKMI----KDPITGLVWIYTEKAVFRYHIQKEARD 397
Query: 367 MWKVYLDMKEYAAALANCRD-PLQRDQVYLVQAEAAFATKDFHRAASFYAKI-NYILSFE 424
+W++Y++M ++ A C+D P D V +AE F K + +A YA NY FE
Sbjct: 398 VWQMYMNMNKFDLAKEYCKDRPECLDMVLAKEAEHCFQNKRYLESAKCYALTQNY---FE 454
Query: 425 EITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTAL 484
EI LKFI +++AL+ FL++KL NL +K QIT++ TW TELYL+++ +L E D
Sbjct: 455 EIALKFIEAKQEEALKEFLIKKLVNLKPSEKTQITLLVTWLTELYLNRLGQL--EAD--- 509
Query: 485 ENRSSEYQSIMREFRAFLSDCK--DVL--DEATTMKLLESYGRVEELVFFASLKEQHEIV 540
E + + EFR FL K D + +T LL S+G V+ +V+F+ + + +E V
Sbjct: 510 EGKQHLFLETREEFRTFLKSPKHKDCFYNNRSTIYDLLASHGDVDNMVYFSVIMQDYERV 569
Query: 541 VHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNN-LNPRKLIP 599
+ HY Q + AL +L K L YKF+P L+ + V++W+ N L+P+ LIP
Sbjct: 570 ISHYCQHDDYSAALDVLSKHCDD-KLFYKFSPVLMQHIPKKVVDAWIQMGNRLDPKNLIP 628
Query: 600 AMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCK 659
A++ YS + + + +E I+Y+EFCV+ L ++ +HN LLSLYAK + D ALL +L+
Sbjct: 629 ALVNYS-QMGSMQQINETIRYMEFCVYELDVKEEAIHNYLLSLYAKHKPD-ALLWYLE-- 684
Query: 660 FGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDPELAMAEA 719
+ + + YD KYALRLC + ++ACV +Y +M ++EEAV LAL+VD +LA + A
Sbjct: 685 --QAGTHVSDIHYDLKYALRLCSEHGYLQACVLVYKIMELYEEAVDLALKVDVDLAKSCA 742
Query: 720 DKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFA 779
D EDDE+LRKKLWL +A+HV+++EK +++KA+ L + LLKIEDILPFFPDF
Sbjct: 743 DLPEDDEELRKKLWLKIARHVVQEEK-----DVKKAMNCLSSCN-LLKIEDILPFFPDFV 796
Query: 780 LIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVC 839
ID FKEAICSSL++YNK IE+LKQEM +AT A IR DI + +Y V++ E C C
Sbjct: 797 TIDHFKEAICSSLEEYNKHIEELKQEMEEATESAKRIREDIQEMRNKYGVVESQEKCATC 856
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| UNIPROTKB|F1SSU6 VPS18 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9P253 VPS18 "Vacuolar protein sorting-associated protein 18 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A6QR33 VPS18 "VPS18 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RAT8 VPS18 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2443626 Vps18 "vacuolar protein sorting 18 (yeast)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|1311556 Vps18 "vacuolar protein sorting 18 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0269924 vps18 "7-fold repeat in clathrin and VPS proteins repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000051037 digA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BSK2 VPS18 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9P253 | VPS18_HUMAN | No assigned EC number | 0.3412 | 0.8905 | 0.9033 | yes | no |
| P59015 | VPS18_DANRE | No assigned EC number | 0.3438 | 0.8956 | 0.9075 | yes | no |
| Q8R307 | VPS18_MOUSE | No assigned EC number | 0.3435 | 0.8834 | 0.8961 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 987 | |||
| pfam05131 | 147 | pfam05131, Pep3_Vps18, Pep3/Vps18/deep orange fami | 8e-44 | |
| pfam00637 | 143 | pfam00637, Clathrin, Region in Clathrin and VPS | 3e-09 | |
| smart00299 | 140 | smart00299, CLH, Clathrin heavy chain repeat homol | 6e-08 |
| >gnl|CDD|218453 pfam05131, Pep3_Vps18, Pep3/Vps18/deep orange family | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 8e-44
Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 248 GIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLMGNK 307
GIY+G LN S N E +E +L S+L P S+A++++H LLL G++
Sbjct: 1 GIYYGTLNN-----SVNDAEKVLEESKVLPRSQLPPSTSP--PKSIALTQFHILLLYGDR 53
Query: 308 VKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDM 367
V VNR++ Q++ ++Q ++GL D F+ Y +IF++ V DE RD+
Sbjct: 54 VIAVNRLNGQVV----YEQVILEPGGKLLGLVVDPVKNTFWLYTAQNIFEIVVEDEDRDV 109
Query: 368 WKVYLDMKEYAAALANCR-DPLQRDQVYLVQAEAAFA 403
WK+YLD ++ AL + DP QRD V QA+ F
Sbjct: 110 WKLYLDKGKFDLALEYAKTDPAQRDAVLTKQADYLFE 146
|
This region is found in a number of protein identified as involved in golgi function and vacuolar sorting. The molecular function of this region is unknown. The members of this family contain a C-terminal ring finger domain. Length = 147 |
| >gnl|CDD|216037 pfam00637, Clathrin, Region in Clathrin and VPS | Back alignment and domain information |
|---|
| >gnl|CDD|128594 smart00299, CLH, Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 987 | |||
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 100.0 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 100.0 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 100.0 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 100.0 | |
| PF05131 | 147 | Pep3_Vps18: Pep3/Vps18/deep orange family; InterPr | 99.97 | |
| PF10367 | 109 | Vps39_2: Vacuolar sorting protein 39 domain 2; Int | 99.66 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 99.65 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 99.37 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 98.83 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.44 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.11 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.94 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.84 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.8 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 97.59 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.57 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.46 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.42 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.19 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.03 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 96.94 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.9 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.83 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 96.59 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 96.54 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 96.51 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 96.48 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 96.43 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 96.39 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.28 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 96.21 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 96.2 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.17 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 96.16 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 96.14 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 96.13 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.1 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 95.98 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 95.94 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 95.93 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 95.88 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 95.88 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 95.85 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 95.83 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.79 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 95.62 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 95.58 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 95.55 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 95.54 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 95.53 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 95.52 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 95.5 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 95.28 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 95.19 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 95.07 | |
| PF10366 | 108 | Vps39_1: Vacuolar sorting protein 39 domain 1; Int | 95.06 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 94.91 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 94.57 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 94.49 | |
| PTZ00421 | 493 | coronin; Provisional | 94.47 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 94.46 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 94.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 94.39 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 94.34 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 94.33 | |
| PTZ00420 | 568 | coronin; Provisional | 94.29 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.27 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 94.26 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 94.18 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 94.06 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 93.99 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 93.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 93.9 | |
| PTZ00421 | 493 | coronin; Provisional | 93.89 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 93.85 | |
| PF10366 | 108 | Vps39_1: Vacuolar sorting protein 39 domain 1; Int | 93.67 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 93.56 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 93.44 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 93.42 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 93.18 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 93.12 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 93.04 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 92.88 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 92.8 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 92.79 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 92.65 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 92.5 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.48 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 92.45 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 92.4 | |
| KOG4445 | 368 | consensus Uncharacterized conserved protein, conta | 92.28 | |
| COG5194 | 88 | APC11 Component of SCF ubiquitin ligase and anapha | 92.21 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 92.04 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 91.96 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 91.85 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.8 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 91.72 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 91.62 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 91.45 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 91.28 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 91.21 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.06 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 91.02 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 90.97 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 90.92 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 90.79 | |
| PTZ00420 | 568 | coronin; Provisional | 90.13 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 90.1 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 89.94 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 89.86 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 89.6 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 89.45 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 89.26 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 89.22 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 89.21 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.19 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 89.19 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 89.16 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 89.13 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 88.87 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 88.83 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 88.44 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 88.34 | |
| KOG1493 | 84 | consensus Anaphase-promoting complex (APC), subuni | 88.32 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 88.24 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 88.23 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 88.03 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 87.93 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 87.92 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 87.84 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 87.74 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 87.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 87.65 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 87.59 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 87.56 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 87.48 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 87.39 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 87.24 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.04 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.95 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 86.94 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 86.88 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 86.86 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 86.83 | |
| PF14446 | 54 | Prok-RING_1: Prokaryotic RING finger family 1 | 86.68 | |
| PF12816 | 196 | Vps8: Golgi CORVET complex core vacuolar protein 8 | 86.64 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 86.35 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 86.34 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 86.23 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 85.67 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 84.98 | |
| PF14779 | 257 | BBS1: Ciliary BBSome complex subunit 1 | 84.93 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 84.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 84.75 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 84.7 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 84.16 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 84.07 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 84.03 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 83.89 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 83.84 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 83.82 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 83.53 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 83.48 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 83.47 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 83.24 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 83.16 | |
| PF09943 | 101 | DUF2175: Uncharacterized protein conserved in arch | 82.89 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 82.53 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 82.52 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 82.49 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 82.45 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 82.45 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 82.31 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 82.13 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 81.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 81.72 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 81.4 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 81.06 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 80.82 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 80.73 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 80.66 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 80.41 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 80.21 |
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-138 Score=1190.68 Aligned_cols=878 Identities=42% Similarity=0.699 Sum_probs=759.1
Q ss_pred cCcceehhHHHHHhhcCCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEE
Q 001978 4 MRQVFQVDVLERYAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIA 82 (987)
Q Consensus 4 ~~~~f~~~~~~~~~~~~~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli 82 (987)
.+++|+.+.+...+|- ..|.+++|++|++|+.+. ++| + .+....++++++.. .++++++|+||+|+|++|
T Consensus 22 ~~~~~s~~~~~~~~~~--~~~~~l~vs~~~~i~~l~---l~~--~~~~~~~~d~~l~k~~--~~~~~k~f~dp~Gs~i~i 92 (911)
T KOG2034|consen 22 QFLTFSREKIHLKVPS--EDIDQLAVSKNWLIMRLG---LLD--LGRANNPIDCELGKKL--EAKIHKMFLDPTGSHILI 92 (911)
T ss_pred hhhhccccceEEecCC--ccceeEEeecceEEEEee---ccc--cCCCCCccccccccee--cceeeEEEeCCCCcEEEE
Confidence 4566777777666552 246888888888887777 343 5 55555566676553 469999999999999999
Q ss_pred EeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeC
Q 001978 83 TIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELN 162 (987)
Q Consensus 83 ~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~ 162 (987)
.++ ++.++|+|.. .|+|+|+|+||+.|++|||. .++++|+++++||.+|.++|..+...++...+.+.++.+-
T Consensus 93 a~~---s~~~m~t~~~-~k~r~Ltk~k~~~veav~w~---ite~st~~~li~t~qg~~~e~~~~~~~~~~~q~~~l~~l~ 165 (911)
T KOG2034|consen 93 ATT---STEYLYTHDN-QKVRVLTKLKGQLVEAVAWW---ITESSTLPILIGTIQGFIFELELPKNKKGIAQIKRLINLI 165 (911)
T ss_pred Eec---CCceEEeccc-CceeeHHHHhhhhHHHHHhh---ccCCCchhhhhccccceEEEeccCccccchhhHHHHHhhh
Confidence 999 7899999987 78999999999999999994 6788999999999999999999876643333334443332
Q ss_pred --CCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEecC-----CchHHHHhhhhcccccccccCCCcCCCcceeee--
Q 001978 163 --ELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTGF-----GSLDTVFASYLDRAVHFMELPGEILNSELHFFI-- 233 (987)
Q Consensus 163 --~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g~-----~~l~~lf~~~~~~~~~~~elp~~~~~s~l~~~~-- 233 (987)
..|.||.++.- .+|++++++|+.|+|+|.++ .++...|..|.+.++++.+.+.+.+.+.+.+++
T Consensus 166 ~~~e~~pv~~Le~-------~~r~~~~~tt~q~il~f~~t~~a~~~~f~~~f~~~~~~~h~i~s~k~~~~~~~~~f~~~~ 238 (911)
T KOG2034|consen 166 LSNEPAPVVKLEG-------ERRYFVSATTPQRILMFLATEGAEFTSFSPFFAGYMELEHPIRSFKSDEGFSNLRFSTMP 238 (911)
T ss_pred ccCCCCceeeecc-------ccceEEEEechhhhHhhHhhhcCcccccchhhhcccccCCccccccchhhhhhheeecCC
Confidence 22677877663 34899999999999999865 357788888877667777766655555555442
Q ss_pred -ccCCCceEEEeecCceEEEEeecCCCCCCCCCCCccccccccccccccCCCCCCCCCcccccCCceEEEEECCEEEEEe
Q 001978 234 -KQRRAVHFAWLSGAGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLMGNKVKVVN 312 (987)
Q Consensus 234 -~~~~~~~faW~t~~gi~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT~~h~llL~~~~l~vvn 312 (987)
..+.|..+||+++.||.+|.+....+++ ...+.+.-.++++ +.+++..++|.+|++|+||+++|+.|++.+||
T Consensus 239 ~~~a~pk~~aw~~~~gi~~G~~~~~~n~~-----~~ll~~e~~~e~~-~~eg~~~~~p~~ivLT~yH~LLl~~d~V~avs 312 (911)
T KOG2034|consen 239 KNIAEPKTWAWKSPDGINFGNVNIYANRD-----QDLLEEEFNIELP-LGEGRKLEPPKAIVLTEFHFLLLYADRVLAVS 312 (911)
T ss_pred ccchhHHHHHhhCCCcceeccccccCCch-----HHHHHHhhhhccc-cccCCCCCCcceehHHHHHHHHHhcCceeeee
Confidence 2356899999999999999887643221 1122221122222 23333346899999999999999999999999
Q ss_pred cCCCceEEEEEecCCCCccccceeeEeeccCCCeEEEEeCCcEEEEEcccchhhHHHHHHchhhHHHHHHhcCC-chhHh
Q 001978 313 RISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRD-PLQRD 391 (987)
Q Consensus 313 ~l~~~~v~~~~l~~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~~~~W~~ll~~~~fe~Al~~~~~-~~~~~ 391 (987)
++|+++|++++++. +..|.++|+|+|...++||+||.+.++++.+++|.|++|+.||++|+|++|+++|++ |..++
T Consensus 313 ~Ln~~vI~~~~~n~---s~~g~~LGlv~D~va~~~w~YTq~~vf~~~vndE~R~vWk~yLd~g~y~kAL~~ar~~p~~le 389 (911)
T KOG2034|consen 313 LLNGEVIYRDQFNE---SELGGILGLVSDSVAETFWLYTQTSVFEYGVNDEARDVWKTYLDKGEFDKALEIARTRPDALE 389 (911)
T ss_pred ccCccccchhccCc---hhcccceeeeeccccceEEEEEeceeeeeeeccchHHHHHHHHhcchHHHHHHhccCCHHHHH
Confidence 99999999999964 247899999999999999999999999999999999999999999999999999997 58999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHHHhcCcChHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q 001978 392 QVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLD 471 (987)
Q Consensus 392 ~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~ 471 (987)
.|+.+||+++|+.++|..||++||++. .+||+|+|||+..++.++|+.||.+||+++++.+++|+++|.+|++|+|+.
T Consensus 390 ~Vl~~qAdf~f~~k~y~~AA~~yA~t~--~~FEEVaLKFl~~~~~~~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~ 467 (911)
T KOG2034|consen 390 TVLLKQADFLFQDKEYLRAAEIYAETL--SSFEEVALKFLEINQERALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLE 467 (911)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHH
Q 001978 472 KINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAK 551 (987)
Q Consensus 472 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~ 551 (987)
+||+++..+....++...+++....+|..|+..+...+|++|+|+++.+||+.+++++||.+++||+.|+.+|+++++|.
T Consensus 468 ~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q~e~ye 547 (911)
T KOG2034|consen 468 QLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQQENYE 547 (911)
T ss_pred HHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999744545556667778888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCchhhHHhhHHHHHhHChHHHHHHHHcCCCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 001978 552 KALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNE 631 (987)
Q Consensus 552 ~AL~~l~~~~~~~~li~k~~~~Ll~~~p~~ti~~l~~~~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~ 631 (987)
+||++|.++.+ .++.|+|++.|+.+.|.+||+.|++.++++|.+++|.+++|..+.+.....+++++||++|+...+..
T Consensus 548 eaLevL~~~~~-~el~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~ 626 (911)
T KOG2034|consen 548 EALEVLLNQRN-PELFYKYAPELITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMT 626 (911)
T ss_pred HHHHHHHhccc-hhhHHHhhhHHHhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCc
Confidence 99999999966 69999999999999999999999999999999999999999888777778899999999999999999
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHhcC
Q 001978 632 DPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVD 711 (987)
Q Consensus 632 ~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~~d 711 (987)
++.+||.++.||+++. ++.++-+|... +. .+...+||+++|+|+|.+++..+++|+||++|++|++||++|++.|
T Consensus 627 ~~~ihn~ll~lya~~~-~~~ll~~le~~-~~---~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d 701 (911)
T KOG2034|consen 627 NPAIHNSLLHLYAKHE-RDDLLLYLEII-KF---MKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFD 701 (911)
T ss_pred CHHHHHHHHHHhhcCC-ccchHHHHHHH-hh---ccccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999987 46677777765 21 1223689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHhcCCCcCcccccCCCCCCcchHHHHHHHHHH
Q 001978 712 PELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSS 791 (987)
Q Consensus 712 i~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~~~~~l~i~dlL~~~p~~~~I~~~Kd~L~~~ 791 (987)
+++|+.+|+.+++|.++||+||+++++|++.+. .++++++.+|+++ ++|+|+|+||+|||+++|++||++||+.
T Consensus 702 ~dlak~~A~~~ee~e~lrKkLWLkIAkh~v~~~-----~~ikk~i~~Lk~~-~lLkiedlLpffpdf~~id~~keaic~~ 775 (911)
T KOG2034|consen 702 IDLAKVIANDPEEDEDLRKKLWLKIAKHVVKQE-----NDIKKAIRFLKEN-ELLTIEDLLPFFPDFTKIDNLKEAICDF 775 (911)
T ss_pred HHHHhhhhcChhhHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHhccC-cccchhhhhccccchhhhhhhHHHHHHH
Confidence 999999999999899999999999999999874 6899999999995 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCC
Q 001978 792 LDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCG 871 (987)
Q Consensus 792 L~~y~~~i~~l~~~m~~~~~~~~~l~~~i~~~~~r~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCg 871 (987)
|++|+.+|++++.+|.+++..+..|+.+++++++||.++++++.|.+|+++|.. + ||+|||||
T Consensus 776 L~~~n~rieel~~em~eat~~a~~I~~~~~~l~~ry~v~ep~d~C~~C~~~ll~-----~------------pF~vf~Cg 838 (911)
T KOG2034|consen 776 LEDYNKRIEELQEEMIEATELADEIRTEISKLRQRYRVLEPQDSCDHCGRPLLI-----K------------PFYVFPCG 838 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcceEEecCccchHHhcchhhc-----C------------cceeeecc
Confidence 999999999999999999999999999999999999999999999999999999 7 99999999
Q ss_pred ChhHHHhHHHHHhhcCCHHHHHHHHHHHHHHHhcccccccccCCCccccccCCCCchhHHHHHHHHHHHhcCCCCchHhH
Q 001978 872 HAFHAQCLIAHVTQCTNETQAEYILDLQKQLTLLGSEARKDANGVTTEDSITSMTPTDKLRSQLDDAIASECPFCGDLMI 951 (987)
Q Consensus 872 H~fH~~CL~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~~~~eC~~Cg~~~i 951 (987)
|+||.+|+++.+.++++.+.+.+- + .....++++++++||+|||+|||+||++||
T Consensus 839 H~FH~~Cl~~~v~~~~~~~~~~~~-------a------------------~~l~~k~~~l~~~l~~iiaaeC~lCg~l~I 893 (911)
T KOG2034|consen 839 HCFHRDCLIRHVLSLLSEELSQKT-------A------------------IELQAKRKKLKNELEDIIAAECPLCGELAI 893 (911)
T ss_pred chHHHHHHHHHHHccccHhhhhhh-------h------------------hhhhhHHHHHHHHHHHHHHhhCccchHHHH
Confidence 999999999999999886621110 0 111245778999999999999999999999
Q ss_pred hhccCCCCCcccccccCcee
Q 001978 952 REISLPFIAPEEAHQFASWE 971 (987)
Q Consensus 952 ~~id~pf~~~~~~~~~~~W~ 971 (987)
++||+||++|+.+ ..+|.
T Consensus 894 ~~Id~Pf~~de~~--~~~W~ 911 (911)
T KOG2034|consen 894 NKIDQPFSDDEQE--LASWN 911 (911)
T ss_pred HhccCCCCCcHHH--hhccC
Confidence 9999999998333 57894
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting | Back alignment and domain information |
|---|
| >PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
| >PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] | Back alignment and domain information |
|---|
| >COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
| >PF14446 Prok-RING_1: Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
| >PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8 | Back alignment and domain information |
|---|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
| >PF14779 BBS1: Ciliary BBSome complex subunit 1 | Back alignment and domain information |
|---|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
| >PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function | Back alignment and domain information |
|---|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 6e-15
Identities = 93/659 (14%), Positives = 181/659 (27%), Gaps = 211/659 (32%)
Query: 295 VSEYHFLLLMGNKVKVVNRISEQIIEELQFDQTSDSISRGI--------IGLCSDATAGV 346
E+ + K +++ + ++ D + I I + DA +G
Sbjct: 11 TGEHQY----QYK-DILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGT 64
Query: 347 FYAYD-----QNSIFQVSVNDEGRDMWKVYLDMKEY---AAALAN-CRDPLQRDQVYLVQ 397
+ Q + Q V + + Y + + R P ++Y+ Q
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEE---------VLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 398 AEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFL--LRKLDNL----- 450
+ + +AK N + + LR L LR N+
Sbjct: 116 RDR------LYNDNQVFAKYN-VSRLQPYL----------KLRQALLELRPAKNVLIDGV 158
Query: 451 ------------AKDDKCQITM---ISTWAT-------ELYLDKINRLLLEDDTALENRS 488
K Q M I W E L+ + +LL + D +RS
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 489 SEYQSIMR-------EFRAFLS-----DCKDVLDEATTMKLLESYG---------RVEEL 527
+I E R L +C VL K ++ R +++
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 528 VFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQ------YKFAPDLIML---- 577
F S I + H+ + +L K + Q P + +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 578 --------DAYETVESW-------MTTNNLNP---RKL------------IPA--MMRYS 605
D ++ V + N L P RK+ IP +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 606 SEPHAKNETHEVIKYLEFCVHR-LHNEDP-----GVHNLLLSLYAKQEDDSALLRFLQCK 659
+ +V+ + L + P + ++ L L K E++ AL R +
Sbjct: 397 FDV----IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 660 FGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDPELAMAEA 719
+ + +D + L + + Y + H +
Sbjct: 453 YNIPKT------FDSDDLIPPYLDQ-------YFYSHIGHH---------------LKNI 484
Query: 720 DKVEDDEDLRKKL----WLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFF 775
+ E R +L ++K IR + +L
Sbjct: 485 EHPERMTLFRMVFLDFRFL--------EQK------IRHDSTAWNASGSIL--------- 521
Query: 776 PDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDE 834
+ +K IC + Y + + + + + I + + L + A++ DE
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFL--PKIEENLICSKYTDLLRI-ALMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114 | Back alignment and structure |
|---|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 987 | |||
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.36 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.15 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.12 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.56 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.08 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.08 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 98.08 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.81 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.8 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.78 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.78 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.75 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.75 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.66 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.65 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.64 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.63 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.62 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.59 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.56 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.55 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.55 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.54 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.53 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.52 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.52 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.52 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.51 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.51 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.5 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.49 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.47 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.46 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.42 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.41 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.4 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 97.39 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.38 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.37 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.36 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 97.36 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.36 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.32 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 97.31 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.31 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.29 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.29 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.29 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.27 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.27 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.27 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.24 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 97.23 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.2 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.16 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.15 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.15 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.14 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.14 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.14 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.14 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 97.13 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 97.13 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.11 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 97.11 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.09 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 97.07 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.07 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 97.07 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.07 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 97.04 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.02 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.99 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 96.98 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 96.98 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.96 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 96.92 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.91 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 96.9 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 96.9 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.89 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 96.89 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 96.89 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.87 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.82 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 96.82 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 96.82 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 96.81 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.8 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 96.8 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.76 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.76 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 96.74 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 96.71 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 96.7 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 96.64 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 96.64 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.62 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.59 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 96.57 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 96.53 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.46 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 96.39 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.39 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 96.35 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.33 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 96.33 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 96.32 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 96.21 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 96.21 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 96.21 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 96.16 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 96.13 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 96.13 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 96.08 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.03 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 96.02 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 95.98 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 95.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 95.94 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 95.92 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 95.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 95.89 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 95.89 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 95.86 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 95.84 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 95.84 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 95.82 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 95.81 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 95.78 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 95.77 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 95.74 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 95.7 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 95.69 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 95.69 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 95.65 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 95.61 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 95.59 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 95.57 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 95.51 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 95.44 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 95.36 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 95.34 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 95.31 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 95.28 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 95.21 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 95.18 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 95.17 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 95.09 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 95.02 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 95.02 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 95.01 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 95.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 95.0 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 94.9 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 94.86 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 94.82 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 94.8 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 94.77 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 94.76 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 94.75 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 94.71 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 94.65 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 94.62 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 94.62 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 94.52 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 94.5 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 94.49 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 94.28 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 94.28 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 94.25 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 94.2 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 94.17 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 94.16 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 94.1 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 94.09 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 94.08 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 94.05 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 94.05 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 94.02 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 93.97 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 93.97 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 93.93 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 93.91 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 93.87 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 93.85 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 93.84 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 93.74 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 93.74 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 93.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 93.65 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 93.57 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 93.56 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 93.53 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 93.44 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 93.31 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 93.24 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 93.2 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 93.09 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 92.99 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 92.97 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 92.95 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 92.91 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 92.77 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 92.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 92.72 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 92.65 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 92.5 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 92.18 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 92.09 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 91.94 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 91.88 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 91.78 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 91.65 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 91.58 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 91.57 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 91.57 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 91.54 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 91.52 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 91.44 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 91.4 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 91.4 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 91.29 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 91.22 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 91.17 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 91.04 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 91.04 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 90.97 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 90.95 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 90.89 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 90.35 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 90.28 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 90.25 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 90.13 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 90.04 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 89.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 89.76 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 89.72 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 89.68 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 89.6 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 89.53 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 89.4 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 89.17 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 89.15 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 88.94 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 88.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 88.61 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 88.61 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 88.55 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 88.47 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 88.29 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 88.28 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 88.16 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 88.14 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 88.12 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 88.11 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 88.1 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 88.04 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 88.03 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 87.89 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 87.73 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 87.56 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 87.28 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 87.23 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 87.04 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 86.95 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 86.91 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 86.78 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 86.68 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 86.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 86.28 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 86.23 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 86.18 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 85.97 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 85.88 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 85.85 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 85.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 85.57 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 85.41 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 85.23 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 85.19 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 85.04 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 85.02 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 84.76 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 84.69 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 84.35 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 83.82 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 83.77 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 83.74 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 83.55 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 82.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 82.78 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 82.69 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 82.31 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 82.07 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 81.97 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 81.85 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 81.58 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 81.26 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 80.99 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 80.98 | |
| 1zvt_A | 256 | Topoisomerase IV subunit A; beta-pinwheel, ATPase, | 80.95 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 80.94 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 80.48 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 80.4 | |
| 1l8d_A | 112 | DNA double-strand break repair RAD50 ATPase; zinc | 80.33 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 80.04 |
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-10 Score=145.81 Aligned_cols=372 Identities=14% Similarity=0.102 Sum_probs=246.3
Q ss_pred hhHHHHHHchhhHHHHHHhcCC---c--h---------------------hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 365 RDMWKVYLDMKEYAAALANCRD---P--L---------------------QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 365 ~~~W~~ll~~~~fe~Al~~~~~---~--~---------------------~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+.+..++.+.|+|++|.++-+. . + ....+..++|..+...|+|.+|++.|.+..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAd 1132 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD 1132 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 4567778888888888877441 0 0 124678899999999999999999999987
Q ss_pred CCCChHHHHHHhcCcChHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHH
Q 001978 419 YILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREF 498 (987)
Q Consensus 419 ~~~~~E~v~lkFl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l 498 (987)
+...+.+|+..+.+.++.+.+..||..-....+. ..+-+++...|.. ++++ +++
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e------~~Idt~LafaYAK-l~rl-------------------eel 1186 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE------SYVETELIFALAK-TNRL-------------------AEL 1186 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc------ccccHHHHHHHHh-hcCH-------------------HHH
Confidence 6677889999999999999999999854332211 1233466666653 2322 245
Q ss_pred HHHHhhccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhHC
Q 001978 499 RAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLD 578 (987)
Q Consensus 499 ~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k~~~~Ll~~~ 578 (987)
..|+..... -+...+-+.+.+.|+.++++.+....++|..++..|++.|+|++|++...+-.+ .+.+.+.+...++..
T Consensus 1187 e~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n-~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1187 EEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS-TRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCC-HHHHHHHHHHHhhhh
Confidence 666653211 122346678888999999999999999999999999999999999999998776 465555544444321
Q ss_pred h-HHHHHHHHcCCCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHH
Q 001978 579 A-YETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQ 657 (987)
Q Consensus 579 p-~~ti~~l~~~~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~ 657 (987)
- ..+...-+. -..+|+.+ +.+..|.... ..-++++.++|.-+.-. ..-..+++.+-.||+++. ++++++.++
T Consensus 1265 Ef~LA~~cgl~-Iiv~~deL-eeli~yYe~~---G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~-peklmEhlk 1337 (1630)
T 1xi4_A 1265 EFRLAQMCGLH-IVVHADEL-EELINYYQDR---GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLE 1337 (1630)
T ss_pred HHHHHHHHHHh-hhcCHHHH-HHHHHHHHHc---CCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC-HHHHHHHHH
Confidence 1 111111111 11233322 2322222111 13567999998876433 234567788888999998 589999998
Q ss_pred HhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHhc-----CHHHHHHHhhccCCCHHHHHHH
Q 001978 658 CKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQV-----DPELAMAEADKVEDDEDLRKKL 732 (987)
Q Consensus 658 ~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~~-----di~lA~~~~~~~~~d~~~~kkL 732 (987)
-.. ..-+...++|.|.+...+.+.|+||.+-|.|+.|+..++++ +.+.-++.+.+.. +.+ |
T Consensus 1338 ~f~---------~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~-n~e----l 1403 (1630)
T 1xi4_A 1338 LFW---------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA-NVE----L 1403 (1630)
T ss_pred HHH---------HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccc-cHH----H
Confidence 762 34678899999999999999999999999999999888873 2344444554544 455 7
Q ss_pred HHHHHHHHhccccCCChhhHHHHHHHHHhcCCCcCcccccCCCCCCcchHHHHHHHHHHH
Q 001978 733 WLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSL 792 (987)
Q Consensus 733 Wl~ll~~~i~~~~~~~~~~i~~~l~~L~~~~~~l~i~dlL~~~p~~~~I~~~Kd~L~~~L 792 (987)
.-+.+.+++.... ..+...+..| .|.+....++.++-..-.++-+|.++...-
T Consensus 1404 yykai~Fyl~~~P----~~lndLl~~l---~~rlD~~R~V~l~~~~~~l~lik~yl~~vq 1456 (1630)
T 1xi4_A 1404 YYRAIQFYLEFKP----LLLNDLLMVL---SPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ 1456 (1630)
T ss_pred HHHHHHHHHhhCh----HHHHHHHHHh---hhcCChHHHHHHHHHcCChHHhHHHHHHHH
Confidence 7788888775421 2233333322 234444444444433334555555554433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
| >1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 | Back alignment and structure |
|---|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 987 | ||||
| d1b89a_ | 336 | a.118.1.3 (A:) Clathrin heavy chain proximal leg s | 2e-27 | |
| d1v87a_ | 114 | g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou | 0.003 |
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Score = 112 bits (281), Expect = 2e-27
Identities = 42/340 (12%), Positives = 94/340 (27%), Gaps = 36/340 (10%)
Query: 497 EFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQM 556
E F++ + + + + + GE + A+
Sbjct: 4 ELEEFINGPNNA-HIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 62
Query: 557 LRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHE 616
RK + + + + ++ +L + Y + E
Sbjct: 63 ARKANST-RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY----FEE 117
Query: 617 VIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKY 676
+I LE + L G+ L LY+K + L+ + + +
Sbjct: 118 LITMLEAALG-LERAHMGMFTELAILYSKF-KPQKMREHLELFWSR---------VNIPK 166
Query: 677 ALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDPELAMAE-----ADKVEDDEDLRKK 731
LR + V +Y ++ A+ + + KV + E
Sbjct: 167 VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVE----- 221
Query: 732 LWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICS- 790
L+ + +E K + + L + + L+ + ++ +
Sbjct: 222 LYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH 277
Query: 791 SLDDYNKQIEQLKQEMNDATHGADNIRN----DISALAQR 826
+ N+ + L D +I D +LAQR
Sbjct: 278 NNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQR 317
|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 987 | |||
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 99.79 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.84 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.84 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.79 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.74 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.59 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.58 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.37 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 97.11 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.09 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.94 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 96.89 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 96.83 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 96.79 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 96.72 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 96.69 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 96.56 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 96.56 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.17 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 95.84 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 95.71 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.69 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 95.55 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 95.22 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 95.04 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 95.04 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 94.85 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 94.83 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 94.73 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 94.71 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 94.46 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 93.75 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 93.75 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 93.59 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 93.41 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 93.25 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 93.04 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 92.48 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 92.4 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 92.32 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 92.32 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 92.22 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 91.73 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 91.36 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 90.84 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 90.13 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 90.01 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 89.51 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 89.15 | |
| d1rutx1 | 30 | LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10 | 88.63 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 87.33 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 86.29 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 86.24 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 85.99 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 83.82 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 83.23 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 82.22 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 81.33 | |
| d2dloa1 | 35 | Thyroid receptor interacting protein 6, TRIP6 {Hum | 81.27 |
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.79 E-value=2.8e-19 Score=196.07 Aligned_cols=270 Identities=12% Similarity=0.083 Sum_probs=206.0
Q ss_pred HHHHHHHhhccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHH
Q 001978 496 REFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLI 575 (987)
Q Consensus 496 ~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k~~~~Ll 575 (987)
++++.||+.+ +..|...|.+.|...|..+.+..++...+||+.++.+|++.++|..|++++.+.+. .++++++.++++
T Consensus 3 ~~~e~fl~~~-n~~d~~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~~~-~~~~k~~~~~l~ 80 (336)
T d1b89a_ 3 AELEEFINGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS-TRTWKEVCFACV 80 (336)
T ss_dssp HHHTTTTTCC-----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC-HHHHHHHHHHHH
T ss_pred hhHHHHHcCC-CcCCHHHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 4567788764 45688999999999999999999999999999999999999999999999999887 699999999999
Q ss_pred hHChHHHHHHHHcCCCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHH
Q 001978 576 MLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRF 655 (987)
Q Consensus 576 ~~~p~~ti~~l~~~~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~f 655 (987)
++.+.++.++.-....++++.+.+.+..|... ...+.++.||+.++.. ...++.+|+.|+.+||+++ ++++++|
T Consensus 81 ~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~----~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~ 154 (336)
T d1b89a_ 81 DGKEFRLAQMCGLHIVVHADELEELINYYQDR----GYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREH 154 (336)
T ss_dssp HTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred hCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHc----CChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHH
Confidence 99998877664333467888887777666443 2467899999998754 4567899999999999998 6899999
Q ss_pred HHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHhc-----CHHHHHHHhhccCCCHHHHH
Q 001978 656 LQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQV-----DPELAMAEADKVEDDEDLRK 730 (987)
Q Consensus 656 L~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~~-----di~lA~~~~~~~~~d~~~~k 730 (987)
|+..+ ..||+++|+++|.+.++++++|+||.++|+|++|+.+++++ +.+..++++.+.. +++
T Consensus 155 l~~~s---------~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~-N~e--- 221 (336)
T d1b89a_ 155 LELFW---------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA-NVE--- 221 (336)
T ss_dssp HHHHS---------TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCS-STH---
T ss_pred HHhcc---------ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccC-ChH---
Confidence 99851 47999999999999999999999999999999999999993 3567777776665 444
Q ss_pred HHHHHHHHHHhccccCCChhhHHHHHHHHHhcCCCcCcccccCCCCCCcchHHHHHHHHHHHHH
Q 001978 731 KLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDD 794 (987)
Q Consensus 731 kLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~~~~~l~i~dlL~~~p~~~~I~~~Kd~L~~~L~~ 794 (987)
+|.+.+..+++.. ...|+.++..+. +.+.+.+++..++..-.++.+|++|......
T Consensus 222 -~~~~~i~~yL~~~----p~~i~~lL~~v~---~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~ 277 (336)
T d1b89a_ 222 -LYYRAIQFYLEFK----PLLLNDLLMVLS---PRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH 277 (336)
T ss_dssp -HHHHHHHHHHHHC----GGGHHHHHHHHG---GGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT
T ss_pred -HHHHHHHHHHHcC----HHHHHHHHHHhc---cCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc
Confidence 8888888888632 146777776663 4566666776677777788888888776553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
| >d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
| >d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|