Citrus Sinensis ID: 002002
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 983 | 2.2.26 [Sep-21-2011] | |||||||
| Q62770 | 2204 | Protein unc-13 homolog C | yes | no | 0.118 | 0.052 | 0.323 | 1e-09 | |
| Q8NB66 | 2214 | Protein unc-13 homolog C | yes | no | 0.118 | 0.052 | 0.323 | 1e-09 | |
| Q8K0T7 | 2210 | Protein unc-13 homolog C | yes | no | 0.118 | 0.052 | 0.323 | 1e-09 | |
| O14795 | 1591 | Protein unc-13 homolog B | no | no | 0.118 | 0.072 | 0.308 | 9e-09 | |
| Q62769 | 1622 | Protein unc-13 homolog B | no | no | 0.118 | 0.071 | 0.308 | 1e-08 | |
| Q9Z1N9 | 1602 | Protein unc-13 homolog B | no | no | 0.118 | 0.072 | 0.308 | 1e-08 | |
| P27715 | 2155 | Phorbol ester/diacylglyce | yes | no | 0.118 | 0.053 | 0.293 | 9e-08 | |
| Q54E35 | 570 | Rho GTPase-activating pro | yes | no | 0.143 | 0.247 | 0.271 | 1e-07 | |
| Q9UPW8 | 1703 | Protein unc-13 homolog A | no | no | 0.118 | 0.068 | 0.293 | 3e-07 | |
| Q4KUS2 | 1712 | Protein unc-13 homolog A | no | no | 0.118 | 0.067 | 0.293 | 3e-07 |
| >sp|Q62770|UN13C_RAT Protein unc-13 homolog C OS=Rattus norvegicus GN=Unc13c PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 17/133 (12%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
K+ + V +A+ L KD G++ YV V +RRTKT F +LNP WDE+ F H++
Sbjct: 1211 KITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFYFECHNS-- 1268
Query: 68 MPTEILEINLYND--------KKTGKRST--FLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
T+ +++ ++++ K+ K+ + FLG+ + T + E V+Y LEKR+
Sbjct: 1269 --TDRIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLS---GEMDVWYNLEKRT 1323
Query: 118 VFSQIKGEIGLKV 130
S + G I LK+
Sbjct: 1324 DKSAVSGAIRLKI 1336
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Rattus norvegicus (taxid: 10116) |
| >sp|Q8NB66|UN13C_HUMAN Protein unc-13 homolog C OS=Homo sapiens GN=UNC13C PE=2 SV=3 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 17/133 (12%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
K+ + V +A+ L KD G++ YV V +RRTKT F +LNP WDE+ F H++
Sbjct: 1221 KITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFYFECHNS-- 1278
Query: 68 MPTEILEINLYND--------KKTGKRST--FLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
T+ +++ ++++ K+ K+ + FLG+ + T + E V+Y LEKR+
Sbjct: 1279 --TDRIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLS---GEMDVWYNLEKRT 1333
Query: 118 VFSQIKGEIGLKV 130
S + G I LK+
Sbjct: 1334 DKSAVSGAIRLKI 1346
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Homo sapiens (taxid: 9606) |
| >sp|Q8K0T7|UN13C_MOUSE Protein unc-13 homolog C OS=Mus musculus GN=Unc13c PE=1 SV=3 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 17/133 (12%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
K+ + V +A+ L KD G++ YV V +RRTKT F +LNP WDE+ F H++
Sbjct: 1217 KITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFFFECHNS-- 1274
Query: 68 MPTEILEINLYND--------KKTGKRST--FLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
T+ +++ ++++ K+ K+ + FLG+ + T + E V+Y LEKR+
Sbjct: 1275 --TDRIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLS---GEMDVWYNLEKRT 1329
Query: 118 VFSQIKGEIGLKV 130
S + G I LK+
Sbjct: 1330 DKSAVSGAIRLKI 1342
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Mus musculus (taxid: 10090) |
| >sp|O14795|UN13B_HUMAN Protein unc-13 homolog B OS=Homo sapiens GN=UNC13B PE=1 SV=2 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 17/133 (12%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
K+ + V A+ L KD G++ YV V ++RTKT F +LNP W+E+ F H++
Sbjct: 601 KITITVVCAQGLQAKDKTGSSDPYVTVQVSKTKKRTKTIFGNLNPVWEEKFHFECHNS-- 658
Query: 68 MPTEILEINLYND--------KKTGKRST--FLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
++ +++ ++++ K+ KR + FLG+ I T + E V+Y LEKR+
Sbjct: 659 --SDRIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLS---GEMDVWYNLEKRT 713
Query: 118 VFSQIKGEIGLKV 130
S + G I L++
Sbjct: 714 DKSAVSGAIRLQI 726
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Homo sapiens (taxid: 9606) |
| >sp|Q62769|UN13B_RAT Protein unc-13 homolog B OS=Rattus norvegicus GN=Unc13b PE=1 SV=2 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 17/133 (12%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
K+ + V A+ L KD G++ YV V ++RTKT F +LNP W+E+ F H++
Sbjct: 614 KITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLNPVWEEKFHFECHNS-- 671
Query: 68 MPTEILEINLYND--------KKTGKRST--FLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
++ +++ ++++ K+ KR + FLG+ I T + E V+Y LEKR+
Sbjct: 672 --SDRIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLS---GEMDVWYNLEKRT 726
Query: 118 VFSQIKGEIGLKV 130
S + G I L++
Sbjct: 727 DKSAVSGAIRLQI 739
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP), Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Rattus norvegicus (taxid: 10116) |
| >sp|Q9Z1N9|UN13B_MOUSE Protein unc-13 homolog B OS=Mus musculus GN=Unc13b PE=2 SV=2 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 17/133 (12%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
K+ + V A+ L KD G++ YV V ++RTKT F +LNP W+E+ F H++
Sbjct: 613 KITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLNPVWEEKFHFECHNS-- 670
Query: 68 MPTEILEINLYND--------KKTGKRST--FLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
++ +++ ++++ K+ KR + FLG+ I T + E V+Y LEKR+
Sbjct: 671 --SDRIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLS---GEMDVWYNLEKRT 725
Query: 118 VFSQIKGEIGLKV 130
S + G I L++
Sbjct: 726 DKSAVSGAIRLQI 738
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP) (By similarity). Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Mus musculus (taxid: 10090) |
| >sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 OS=Caenorhabditis elegans GN=unc-13 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
K+ + V A+ L+ KD G + YV +RRT+T ++LNP W+E+ F H++
Sbjct: 1158 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-- 1215
Query: 68 MPTEILEINLYND----------KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
T+ +++ ++++ K T + FLG+ I T + E V+Y LEKR+
Sbjct: 1216 --TDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS---GEMDVWYNLEKRT 1270
Query: 118 VFSQIKGEIGLKV 130
S + G I L +
Sbjct: 1271 DKSAVSGAIRLHI 1283
|
May form part of a signal transduction pathway, transducing the signal from diacylglycerol to effector functions. One such function could be the release of neurotransmitter from neurons. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q54E35|GACEE_DICDI Rho GTPase-activating protein gacEE OS=Dictyostelium discoideum GN=gacEE PE=3 SV=2 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 10/151 (6%)
Query: 13 VCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEI 72
V ++NL KD G + +VI+ + Q+ RT+T ++ LNPQ++E F + +
Sbjct: 250 VVKSRNLAAKDLNGKSDPFVIIKAEQQQHRTQTIYKSLNPQFNEAFHFDITKHQGYVYFF 309
Query: 73 LEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKV-Y 131
+ D+ K + F+G+V + S GSE S++ PL R+ ++ G+I +K+ Y
Sbjct: 310 VW-----DEDKFKTADFMGEVAVPLSLLPPNGSEISLWLPLSPRNSKDKVSGDILIKIRY 364
Query: 132 YIDEDPPAPAPEAAAVAEPATKPEAAVADKP 162
+ D +P + EA V ++P
Sbjct: 365 FFSPDQIEVSPTSIY----GNSLEAIVKNRP 391
|
Rho GTPase-activating protein involved in the signal transduction pathway. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9UPW8|UN13A_HUMAN Protein unc-13 homolog A OS=Homo sapiens GN=UNC13A PE=2 SV=4 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 17/133 (12%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
K+ + V A+ L KD G++ YV V ++RTKT + +LNP W+E F H++
Sbjct: 677 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS-- 734
Query: 68 MPTEILEINLYND--------KKTGKRST--FLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
++ +++ ++++ K+ KR + FLG+ I T + E V+Y L+KR+
Sbjct: 735 --SDRIKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS---GEMDVWYNLDKRT 789
Query: 118 VFSQIKGEIGLKV 130
S + G I L +
Sbjct: 790 DKSAVSGAIRLHI 802
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses (By similarity). Also involved in secretory granule priming in insulin secretion (By similarity). Interacts with FBXO45 (via SRY domain); leading to the degradation of UNC13A by the proteasome. Homo sapiens (taxid: 9606) |
| >sp|Q4KUS2|UN13A_MOUSE Protein unc-13 homolog A OS=Mus musculus GN=Unc13a PE=1 SV=3 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 17/133 (12%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
K+ + V A+ L KD G++ YV V ++RTKT + +LNP W+E F H++
Sbjct: 686 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS-- 743
Query: 68 MPTEILEINLYND--------KKTGKRST--FLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
++ +++ ++++ K+ KR + FLG+ I T + E V+Y L+KR+
Sbjct: 744 --SDRIKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS---GEMDVWYNLDKRT 798
Query: 118 VFSQIKGEIGLKV 130
S + G I L +
Sbjct: 799 DKSAVSGAIRLHI 811
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Also involved in secretory granule priming in insulin secretion. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 983 | ||||||
| 255569420 | 1000 | conserved hypothetical protein [Ricinus | 0.990 | 0.974 | 0.779 | 0.0 | |
| 224126001 | 993 | predicted protein [Populus trichocarpa] | 0.985 | 0.975 | 0.777 | 0.0 | |
| 224125997 | 996 | predicted protein [Populus trichocarpa] | 0.991 | 0.978 | 0.775 | 0.0 | |
| 225439219 | 996 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.974 | 0.758 | 0.0 | |
| 147811948 | 977 | hypothetical protein VITISV_009775 [Viti | 0.974 | 0.980 | 0.758 | 0.0 | |
| 449453812 | 994 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.969 | 0.745 | 0.0 | |
| 356563570 | 987 | PREDICTED: uncharacterized protein LOC10 | 0.981 | 0.977 | 0.753 | 0.0 | |
| 449499441 | 994 | PREDICTED: uncharacterized LOC101220129 | 0.985 | 0.974 | 0.748 | 0.0 | |
| 356511907 | 972 | PREDICTED: uncharacterized protein LOC10 | 0.969 | 0.980 | 0.744 | 0.0 | |
| 15228607 | 1017 | C2 and plant phosphoribosyltransferase d | 0.994 | 0.961 | 0.739 | 0.0 |
| >gi|255569420|ref|XP_002525677.1| conserved hypothetical protein [Ricinus communis] gi|223534977|gb|EEF36660.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1566 bits (4054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 787/1009 (77%), Positives = 864/1009 (85%), Gaps = 35/1009 (3%)
Query: 1 MAESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEF 60
MAE+C+RKLIVEVCNAKNLMPKDGQGTASAY IVD+DGQRRRTKTKFRDLNP+W+E+LEF
Sbjct: 1 MAETCSRKLIVEVCNAKNLMPKDGQGTASAYAIVDYDGQRRRTKTKFRDLNPEWEEKLEF 60
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
LVHD +SM EILEINLYNDKK GKRSTFLGKVKIAGS F K+GSE+ +YYPLEKRSVFS
Sbjct: 61 LVHDTDSMANEILEINLYNDKKAGKRSTFLGKVKIAGSGFVKLGSETLIYYPLEKRSVFS 120
Query: 121 QIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVE 180
QIKGEIGLKVYYIDEDPPA AA A P E + +++++ + E
Sbjct: 121 QIKGEIGLKVYYIDEDPPAEQKPEAAAAAPPAAEEKPPESTEAKPEEEKKEEKAEEKKEE 180
Query: 181 GKKEEEKPKEEKPP--EENTNPKP----AEAPPAAAAVAATPVEVQNPPLAQSDKPSNAK 234
K+++++ ++ PP +E + KP A +A A P EV+NPP+A+ P
Sbjct: 181 VKEDKKEEEKPNPPPQQEEKDKKPEVENPPAAATPSAPPAPPAEVENPPVAEKIAPQQKD 240
Query: 235 DKATVTETKTQELRLNEHELRSLTS-DRSRSAYDLVDRMPFLYVRVLKAKRAGNVSNGSL 293
D KT +L +++ ELRSLTS DRSRSAYDLVDRM FLYVRV+KAK + + +
Sbjct: 241 DNKAADTGKTCDLTISDLELRSLTSSDRSRSAYDLVDRMLFLYVRVIKAKTS---KSDPI 297
Query: 294 YAKLVIGTHSIKTKSQAD-KDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLGT 352
YAKLVIGTHSIKTKSQ D KDWDQVFAFDKEGLNS+SLEVSVW+EEKKEN+E TE+ LGT
Sbjct: 298 YAKLVIGTHSIKTKSQGDNKDWDQVFAFDKEGLNSSSLEVSVWAEEKKENDEKTESSLGT 357
Query: 353 VLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQADEAFQEAWQSDSGGL 412
V FDLQEVPKRVPPDSPLAPQWYSLESEK P NDVMLAVWIGTQADEAFQEAWQSDSGGL
Sbjct: 358 VSFDLQEVPKRVPPDSPLAPQWYSLESEKSPENDVMLAVWIGTQADEAFQEAWQSDSGGL 417
Query: 413 IPETRAKVYLSPKLWYLRLTVIQTQDLQPGSG-SEPKVRSPELYVKGQLGAQLFKTGRTS 471
IPETRAKVYLSPKLWYLRLTVIQTQDLQ SG +EPKVRS +LYVK QLG Q+FKTGR S
Sbjct: 418 IPETRAKVYLSPKLWYLRLTVIQTQDLQLASGATEPKVRSTDLYVKAQLGPQVFKTGRVS 477
Query: 472 VGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQMSTVERRIDDRA 531
SSANPTWNEDLVFVAAEPFEPFLVVTVED +NG SVG+A+IQM+++ERR DDR
Sbjct: 478 ------SSANPTWNEDLVFVAAEPFEPFLVVTVEDASNGQSVGNAKIQMASIERRTDDRT 531
Query: 532 EPKSRWFNLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLE 591
EPKSRWFNLVGDE+RPY GRIH+R CLEGGYHVLDEAAHVTSDVRAAAKQLAK+PIGLLE
Sbjct: 532 EPKSRWFNLVGDESRPYTGRIHVRVCLEGGYHVLDEAAHVTSDVRAAAKQLAKAPIGLLE 591
Query: 592 VGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPC 651
VGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQ+TWDVYDPC
Sbjct: 592 VGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQHTWDVYDPC 651
Query: 652 TVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKM 711
TVLTIGVFDNGRYKRDEAGK GKD+RVGK+R+RLSTLDTNRVYLNSYSLTVLLPGGAK+M
Sbjct: 652 TVLTIGVFDNGRYKRDEAGKAGKDIRVGKVRIRLSTLDTNRVYLNSYSLTVLLPGGAKRM 711
Query: 712 GEIEIAVRFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEP 771
GEIEIA+RF+CSSWL LIQAY TPMLPRMHYV PLGPAQQDILRHTAMRIVTARLARSEP
Sbjct: 712 GEIEIALRFSCSSWLGLIQAYTTPMLPRMHYVLPLGPAQQDILRHTAMRIVTARLARSEP 771
Query: 772 PLGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTILVH 831
LGQEVVQFMLD+DTH+WSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAH PT++L+H
Sbjct: 772 ALGQEVVQFMLDSDTHMWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHPPTSVLLH 831
Query: 832 VLLVAVV-----------------LSLRFRYRQRVPQNMDPRLSYVDVVGPDELDEEFDG 874
+LLVAVV L+LRFRYRQRVP NMDPRLSYVD VGPDELDEEFDG
Sbjct: 832 ILLVAVVLCPHLLLPTVFMYAFLILALRFRYRQRVPHNMDPRLSYVDAVGPDELDEEFDG 891
Query: 875 FPTSRPSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCLVA 934
FPT+R ++VVRIRYDRLRAL+GRAQTLLGD+AAQGERLEALFNWRDPRAT IFVV CL A
Sbjct: 892 FPTTRSADVVRIRYDRLRALSGRAQTLLGDLAAQGERLEALFNWRDPRATGIFVVFCLFA 951
Query: 935 SLVFYAVPFKLFVLGSGFYYLRHPRFRGDMPSVPVNFVRRLPSLSDQIL 983
SLVFY VPFK+FVLG+GFYY RHP FR DMPS+P+NF RRLPSLSDQIL
Sbjct: 952 SLVFYVVPFKVFVLGAGFYYFRHPMFRHDMPSIPINFFRRLPSLSDQIL 1000
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126001|ref|XP_002319731.1| predicted protein [Populus trichocarpa] gi|222858107|gb|EEE95654.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1562 bits (4044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 783/1007 (77%), Positives = 861/1007 (85%), Gaps = 38/1007 (3%)
Query: 1 MAESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEF 60
MAE+C RKLIVEVCNA+NLMPKDGQGTASA+ VDFDGQRRRTKTK RDLNP+WDE+LEF
Sbjct: 1 MAETCTRKLIVEVCNARNLMPKDGQGTASAFATVDFDGQRRRTKTKLRDLNPEWDEKLEF 60
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
LVHD +SM TE LEI+LYNDKKTGKRSTFLGKV+IAGS F K G E+ VYYPLEKRSVFS
Sbjct: 61 LVHDTDSMATETLEISLYNDKKTGKRSTFLGKVRIAGSAFVKSGGETLVYYPLEKRSVFS 120
Query: 121 QIKGEIGLKVYYIDEDPPAP----APEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKP 176
QIKGE+GLKVYYIDEDPPAP PE A P T+ + PE+ EE+K+E+P
Sbjct: 121 QIKGELGLKVYYIDEDPPAPPAEQKPEEKA---PETEENKPAEEAKPEEEKKEEEKKEEP 177
Query: 177 ATVEGKKEEEKPKEEKPPEENTNPK-PAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKD 235
T K+ +++ ++ PP + NPK P EA P PV+V+NPPLA+S+K + ++
Sbjct: 178 KTESNKEAKKEEEKPSPPPQEENPKKPEEAAP--------PVKVENPPLAESEKKPSKEE 229
Query: 236 KATVTETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAGNVSNGSLYA 295
K K E+ +++ ELRSL SDR RSAYDLVDRMPFLYVRV+KAK A N S +YA
Sbjct: 230 KEKAEIVKRSEVTISDLELRSLASDRGRSAYDLVDRMPFLYVRVVKAKTANNESKSPVYA 289
Query: 296 KLVIGTHSIKTKSQADKDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENC-LGTVL 354
KL+IGTHSIKTKSQ+DKDWD+VFAFDKEGLNSTSLEVSVW+EEKKENEE T+ C LGTV
Sbjct: 290 KLMIGTHSIKTKSQSDKDWDKVFAFDKEGLNSTSLEVSVWTEEKKENEEATQECSLGTVS 349
Query: 355 FDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQADEAFQEAWQSDSGGLIP 414
FDLQEVPKRVPPDSPLAPQWY+LESE GN+VMLAVWIGTQADEAFQEAWQSDSGGL+P
Sbjct: 350 FDLQEVPKRVPPDSPLAPQWYALESENSAGNEVMLAVWIGTQADEAFQEAWQSDSGGLLP 409
Query: 415 ETRAKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGL 474
ETRAKVYLSPKLWYLRLTVIQTQDL GS K R+PELYVK QLGAQLFKTGRTSVG
Sbjct: 410 ETRAKVYLSPKLWYLRLTVIQTQDLHLGSA---KARNPELYVKAQLGAQLFKTGRTSVGS 466
Query: 475 SPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQMSTVERRIDDRAEPK 534
+ +SSANPTWNEDLVFVAAEPFEPFL VTVEDVTNG SVGHA+I ++++ERR DDR E K
Sbjct: 467 TSASSANPTWNEDLVFVAAEPFEPFLTVTVEDVTNGQSVGHAKIHVASIERRTDDRTELK 526
Query: 535 SRWFNLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGI 594
SRWFNLVGD+T+PY GRIH+R CLEGGYHVLDEAAHVTSDVRAAAKQLAK+PIGLLEVGI
Sbjct: 527 SRWFNLVGDDTKPYTGRIHVRVCLEGGYHVLDEAAHVTSDVRAAAKQLAKAPIGLLEVGI 586
Query: 595 RGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVL 654
RGATNLLPVKT+DGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVL
Sbjct: 587 RGATNLLPVKTRDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVL 646
Query: 655 TIGVFDNGRYKRDE-AGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGE 713
TIGVFDNGRYK DE AGK GKDVRVGK+R+RLSTLDTNRVYLN YSLTVLLP GAKKMGE
Sbjct: 647 TIGVFDNGRYKHDEAAGKQGKDVRVGKVRIRLSTLDTNRVYLNQYSLTVLLPSGAKKMGE 706
Query: 714 IEIAVRFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPL 773
IEIAVRF+CSSWL+LIQAY +PMLPRMHYV+PLGPAQQDILRHTAMR+VTARL RSEPPL
Sbjct: 707 IEIAVRFSCSSWLSLIQAYTSPMLPRMHYVKPLGPAQQDILRHTAMRLVTARLTRSEPPL 766
Query: 774 GQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTILVHVL 833
GQEVVQFMLD+DTH+WSMRRSKANWFRVVGCLT ATLARW++GIRTW H PTTIL+HVL
Sbjct: 767 GQEVVQFMLDSDTHMWSMRRSKANWFRVVGCLTHVATLARWIEGIRTWVHPPTTILMHVL 826
Query: 834 LVAVVLS-----------------LRFRYRQRVPQNMDPRLSYVDVVGPDELDEEFDGFP 876
LVAVVL RFRYRQRVP N+D RLSYVD+VG DELDEEFDGFP
Sbjct: 827 LVAVVLCPHLVLPTIFMYAFLILVFRFRYRQRVPLNIDSRLSYVDMVGLDELDEEFDGFP 886
Query: 877 TSRPSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCLVASL 936
++R +VVRIRYDRLRALAGRAQTLLGD AA GERLEAL+NWRDPRAT IFVV CLVASL
Sbjct: 887 STRSQDVVRIRYDRLRALAGRAQTLLGDFAAHGERLEALWNWRDPRATGIFVVFCLVASL 946
Query: 937 VFYAVPFKLFVLGSGFYYLRHPRFRGDMPSVPVNFVRRLPSLSDQIL 983
VFY +PFK+FVLG GFYYLRHPRFR DMPSVPV+F RRLPS SDQIL
Sbjct: 947 VFYVIPFKVFVLGFGFYYLRHPRFRDDMPSVPVSFFRRLPSFSDQIL 993
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125997|ref|XP_002319730.1| predicted protein [Populus trichocarpa] gi|222858106|gb|EEE95653.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1548 bits (4007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 779/1004 (77%), Positives = 862/1004 (85%), Gaps = 29/1004 (2%)
Query: 1 MAESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEF 60
MAE+C RKLIVEVCNA++LMPKDGQGTASA+ VDFDGQRRRTKTK RDLNP+WDE+LEF
Sbjct: 1 MAETCTRKLIVEVCNARSLMPKDGQGTASAFATVDFDGQRRRTKTKLRDLNPEWDEKLEF 60
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
LVHD +SM TE LEI+LYNDKKTGKRSTFLGKV+IAGS F K G E+ VYYPLEKRSVFS
Sbjct: 61 LVHDTDSMATETLEISLYNDKKTGKRSTFLGKVRIAGSAFVKSGGETLVYYPLEKRSVFS 120
Query: 121 QIKGEIGLKVYYIDEDPPAP-APEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATV 179
QIKGE+GLKVYYIDEDPPAP A + P T+ + PE+ EE+K+E+P T
Sbjct: 121 QIKGELGLKVYYIDEDPPAPPAEQKPEEKAPETEENKPAEEAKPEEEKKEEEKKEEPKTE 180
Query: 180 EGKKEEEKPKEEKPPEENTNPK-PAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKAT 238
K+ +++ ++ PP + NPK P EA P PV+V+NPPLA+S+K + ++K
Sbjct: 181 SNKEAKKEEEKPSPPPQEENPKKPEEAAP--------PVKVENPPLAESEKKPSKEEKEK 232
Query: 239 VTETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAGNVSNGSLYAKLV 298
K E+ +++ ELRSL SDR RSAYDLVDRMPFLYVRV+KAK A N S +YAKL+
Sbjct: 233 AEIVKRSEVTISDLELRSLASDRGRSAYDLVDRMPFLYVRVVKAKTANNESKSPVYAKLM 292
Query: 299 IGTHSIKTKSQADKDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENC-LGTVLFDL 357
IGTHSIKTKSQ+DKDWD+VFAFDKEGLNSTSLEVSVW+EEKKENEE T+ C LGTV FDL
Sbjct: 293 IGTHSIKTKSQSDKDWDKVFAFDKEGLNSTSLEVSVWTEEKKENEETTQECSLGTVSFDL 352
Query: 358 QEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQADEAFQEAWQSDSGGLIPETR 417
QEVPKRVPPDSPLAPQWY+LESE GN+VMLAVWIGTQADEAFQEAWQSDSGGL+PETR
Sbjct: 353 QEVPKRVPPDSPLAPQWYALESENSAGNEVMLAVWIGTQADEAFQEAWQSDSGGLLPETR 412
Query: 418 AKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPS 477
AKVYLSPKLWYLRLTVIQTQDL GSGSE KVR+PELYVK QLGAQLFKTGRTSVG + +
Sbjct: 413 AKVYLSPKLWYLRLTVIQTQDLHLGSGSEAKVRNPELYVKAQLGAQLFKTGRTSVGSTSA 472
Query: 478 SSANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQMSTVERRIDDRAEPKSRW 537
SSANPTWNEDLVFVAAEPFEPFL VTVEDVTNG SVGHA+I ++++ERR DDR E KSRW
Sbjct: 473 SSANPTWNEDLVFVAAEPFEPFLTVTVEDVTNGQSVGHAKIHVASIERRTDDRTELKSRW 532
Query: 538 FNLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIRGA 597
FNLVGD+T+PY GRIH+R CLEGGYHVLDEAAHVTSDVRAAAKQLAK+PIGLLEVGIRGA
Sbjct: 533 FNLVGDDTKPYTGRIHVRVCLEGGYHVLDEAAHVTSDVRAAAKQLAKAPIGLLEVGIRGA 592
Query: 598 TNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIG 657
TNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILD+FNPRWNEQYTWDVYDPCTVLTIG
Sbjct: 593 TNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDQFNPRWNEQYTWDVYDPCTVLTIG 652
Query: 658 VFDNGRYKRDEAG-KPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEI 716
VFDNGRYK DEA K GKDVRVGK+R+RLSTLDTNRVY N YSLTV+LP GAKKMGEIEI
Sbjct: 653 VFDNGRYKHDEAAEKQGKDVRVGKVRIRLSTLDTNRVYFNQYSLTVVLPSGAKKMGEIEI 712
Query: 717 AVRFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQE 776
A+RF+CSSWL+LIQAY +PMLPRMHYV+P+GP QQDILRHTAMR+VT RL RSEPPLGQE
Sbjct: 713 AIRFSCSSWLSLIQAYTSPMLPRMHYVKPMGPTQQDILRHTAMRLVTTRLTRSEPPLGQE 772
Query: 777 VVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTILVHVLLVA 836
VVQFMLD+DTH+WSMRRSKANWFRVVGCLTR ATLARW +GIRTW H PT++L+HVLLVA
Sbjct: 773 VVQFMLDSDTHMWSMRRSKANWFRVVGCLTRVATLARWTEGIRTWVHPPTSVLMHVLLVA 832
Query: 837 VV-----------------LSLRFRYRQRVPQNMDPRLSYVDVVGPDELDEEFDGFPTSR 879
VV L+ RFRYRQRVP NMD RLSYVD+VGPDELDEEFDGFPT+R
Sbjct: 833 VVLCPHLVLPTIFMYAFLILAFRFRYRQRVPLNMDSRLSYVDMVGPDELDEEFDGFPTTR 892
Query: 880 PSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCLVASLVFY 939
+VVRIRYDRLRALAGRAQTLLGD AA GERLEAL+NWRDPRAT IFVV CLVASLVFY
Sbjct: 893 SQDVVRIRYDRLRALAGRAQTLLGDFAAHGERLEALWNWRDPRATGIFVVFCLVASLVFY 952
Query: 940 AVPFKLFVLGSGFYYLRHPRFRGDMPSVPVNFVRRLPSLSDQIL 983
VPFK+FVLG GFYYLRHPRFR DMPS+PV+F RRLPS SDQIL
Sbjct: 953 VVPFKVFVLGFGFYYLRHPRFRDDMPSIPVSFFRRLPSFSDQIL 996
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439219|ref|XP_002276331.1| PREDICTED: uncharacterized protein LOC100253604 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1519 bits (3934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 765/1008 (75%), Positives = 847/1008 (84%), Gaps = 37/1008 (3%)
Query: 1 MAESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEF 60
MAE+C+RKL+VE+CNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDE LEF
Sbjct: 1 MAETCSRKLVVEICNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDETLEF 60
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
LV D ESM +EILEIN+YNDKKTGKR+TFLGKVKIAGSTFAK GSE VYYPLEKRSVFS
Sbjct: 61 LVQDPESMASEILEINVYNDKKTGKRTTFLGKVKIAGSTFAKAGSEDLVYYPLEKRSVFS 120
Query: 121 QIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVE 180
QIKGEIGLK+ Y+DED P P PE AA AE EAAVA P E+ + +
Sbjct: 121 QIKGEIGLKISYVDEDVP-PEPEKAA-AEEKKPDEAAVA--PSEQKTDDAAAAPAATEEK 176
Query: 181 GKKEEEKPKEEKPPEENTNPKPAEAPP------AAAAVAATPVEVQNPPLAQSDKPSNAK 234
++EE+ K ++ +E + KPAE P A AA A+ P EV+NPP+A ++K K
Sbjct: 177 APEKEEEKKADESNKEAADQKPAEPPKDEKAEEAPAAAASPPAEVENPPVAHTEKAIQTK 236
Query: 235 DKATVTETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAGNVSNGSLY 294
+ T K +L +++ ELRSL DR R AYDLVDRMPFLYVRV+KAK A + + ++Y
Sbjct: 237 E--TTETEKRPDLGVSDLELRSLAGDRGRRAYDLVDRMPFLYVRVVKAKGANSEAESTVY 294
Query: 295 AKLVIGTHSIKTKSQADKDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLGTVL 354
AKLVIGTHS++TKS++DKDWDQVFAFDKEGLN TSLEVSVW E KK+ E CTE +G V
Sbjct: 295 AKLVIGTHSVRTKSKSDKDWDQVFAFDKEGLNCTSLEVSVWVE-KKDGENCTETSIGAVS 353
Query: 355 FDLQEVPKRVPPDSPLAPQWYSLE--SEKLPGNDVMLAVWIGTQADEAFQEAWQSDSGGL 412
FDLQEVPKRVPPDSPLAPQWY+LE SE PGND+MLAVWIGTQADEAFQEAWQSDSGGL
Sbjct: 354 FDLQEVPKRVPPDSPLAPQWYTLEDSSENSPGNDIMLAVWIGTQADEAFQEAWQSDSGGL 413
Query: 413 IPETRAKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSV 472
IPETRAKVYLSPKLWYLRLTVIQ+QDLQ GSG E K + PELYVK QLGAQ+FKT RTS+
Sbjct: 414 IPETRAKVYLSPKLWYLRLTVIQSQDLQLGSGPEAKAKGPELYVKAQLGAQVFKTARTSI 473
Query: 473 GLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQMSTVERRIDDRAE 532
G S+NPTWNEDL+FVAAEPFE FLV+TVEDVT+G VGHA++ + +++RR DD E
Sbjct: 474 G-----SSNPTWNEDLLFVAAEPFEQFLVMTVEDVTSGQPVGHAKVHVPSLDRRTDDTTE 528
Query: 533 PKSRWFNLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEV 592
KSRWFNLVGDE RPYAGRIH+RACLEGGYHVLDEAAHVTSDVRA+AKQLAK PIGLLEV
Sbjct: 529 SKSRWFNLVGDEKRPYAGRIHVRACLEGGYHVLDEAAHVTSDVRASAKQLAKPPIGLLEV 588
Query: 593 GIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCT 652
GIRGATNLLPVK+KDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCT
Sbjct: 589 GIRGATNLLPVKSKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCT 648
Query: 653 VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMG 712
VLTIGVFDN RYK+DEAGKPG+D+R+GKIRVRLSTLDTNRVY NSYSLTVLLPGG+K+MG
Sbjct: 649 VLTIGVFDNARYKQDEAGKPGRDIRMGKIRVRLSTLDTNRVYTNSYSLTVLLPGGSKRMG 708
Query: 713 EIEIAVRFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPP 772
EIEIAVRF+CSSWLNLIQAYA+PMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEP
Sbjct: 709 EIEIAVRFSCSSWLNLIQAYASPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPA 768
Query: 773 LGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTILVHV 832
LGQEVVQ+MLD+DTHVWSMRRSKANWFRV+G L+RAATLARWLDGIRTW H PTTIL+HV
Sbjct: 769 LGQEVVQYMLDSDTHVWSMRRSKANWFRVLGWLSRAATLARWLDGIRTWVHPPTTILMHV 828
Query: 833 LLVAVVLS-----------------LRFRYRQRVPQNMDPRLSYVDVVGPDELDEEFDGF 875
LVAV+L LRFRYR+RV +MD RLSY + + DELDEEFD F
Sbjct: 829 FLVAVILCPHLVLPTVFMYAFFIIVLRFRYRRRVLLSMDTRLSYAEAISADELDEEFDSF 888
Query: 876 PTSRPSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCLVAS 935
PT + + VR RYDRLR LAGRAQTLLGD+AAQGERLEALFNWRDPRAT +FVV CLVAS
Sbjct: 889 PTIKSIDQVRQRYDRLRILAGRAQTLLGDMAAQGERLEALFNWRDPRATGLFVVFCLVAS 948
Query: 936 LVFYAVPFKLFVLGSGFYYLRHPRFRGDMPSVPVNFVRRLPSLSDQIL 983
LVFY VPF+ FVLG GFYYLRHPRFRGDMPSVP NF RRLPSLSDQIL
Sbjct: 949 LVFYTVPFRAFVLGWGFYYLRHPRFRGDMPSVPFNFFRRLPSLSDQIL 996
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147811948|emb|CAN63720.1| hypothetical protein VITISV_009775 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1513 bits (3917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 760/1002 (75%), Positives = 838/1002 (83%), Gaps = 44/1002 (4%)
Query: 1 MAESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEF 60
M E+C+RKL+VE+CNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDE LEF
Sbjct: 1 MVETCSRKLVVEICNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDETLEF 60
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
LV D ESM +EILEIN+YNDKKTGKR+TFLGKVKIAGSTFAK GSE VYYPLEKRSVFS
Sbjct: 61 LVQDPESMASEILEINVYNDKKTGKRTTFLGKVKIAGSTFAKAGSEDLVYYPLEKRSVFS 120
Query: 121 QIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVE 180
QIKGEIGLK+ Y+DED P P PE AA E KP+ A P ++ + + K A
Sbjct: 121 QIKGEIGLKISYVDEDVP-PEPEKAAAEE--KKPDXAAEKAPEKEEEKKADESNKEAA-- 175
Query: 181 GKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVT 240
+K E PK+EK A A AA A+ P EV+NPP+A ++K K+ T
Sbjct: 176 DQKPAEPPKDEK------------AEEAPAAAASPPAEVENPPVAHTEKAIQTKE--TTE 221
Query: 241 ETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAGNVSNGSLYAKLVIG 300
K +L +++ ELRSL DR R AYDLVDRMPFLYVRV+KAK A + + ++YAKLVIG
Sbjct: 222 TEKRPDLGVSDLELRSLAGDRGRRAYDLVDRMPFLYVRVVKAKGANSEAESTVYAKLVIG 281
Query: 301 THSIKTKSQADKDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEV 360
THS++TKS++DKDWDQVFAFDKEGLN TSLEVSVW E KK+ E CTE +G V FDLQEV
Sbjct: 282 THSVRTKSKSDKDWDQVFAFDKEGLNCTSLEVSVWVE-KKDGENCTETSIGAVSFDLQEV 340
Query: 361 PKRVPPDSPLAPQWYSLE--SEKLPGNDVMLAVWIGTQADEAFQEAWQSDSGGLIPETRA 418
PKRVPPDSPLAPQWY+LE SE PGND+MLAVWIGTQADEAFQEAWQSDSGGLIPETRA
Sbjct: 341 PKRVPPDSPLAPQWYTLEDSSENSPGNDIMLAVWIGTQADEAFQEAWQSDSGGLIPETRA 400
Query: 419 KVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSS 478
KVYLSPKLWYLRLTVIQ+QDLQ GSG E K + PELYVK QLGAQ+FKT RTS+G
Sbjct: 401 KVYLSPKLWYLRLTVIQSQDLQLGSGPEAKAKGPELYVKAQLGAQVFKTARTSIG----- 455
Query: 479 SANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQMSTVERRIDDRAEPKSRWF 538
S+NPTWNEDL+FVAAEPFE FLV+TVEDVT+G VGHA++ + +++RR DD E KSRWF
Sbjct: 456 SSNPTWNEDLLFVAAEPFEQFLVMTVEDVTSGQPVGHAKVHVPSLDRRTDDXTESKSRWF 515
Query: 539 NLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIRGAT 598
NLVGDE RPYAGRIH+RACLEGGYHVLDEAAHVTSDVRA+AKQLAK PIGLLEVGIRGAT
Sbjct: 516 NLVGDEKRPYAGRIHVRACLEGGYHVLDEAAHVTSDVRASAKQLAKPPIGLLEVGIRGAT 575
Query: 599 NLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGV 658
NLLPVK+KDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGV
Sbjct: 576 NLLPVKSKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGV 635
Query: 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAV 718
FDN RYK+DEAGKPG+D+R+GKIRVRLSTLDTNRVY NSYSLTVLLPGG+K+MGEIEIAV
Sbjct: 636 FDNARYKQDEAGKPGRDIRMGKIRVRLSTLDTNRVYTNSYSLTVLLPGGSKRMGEIEIAV 695
Query: 719 RFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVV 778
RF+CSSWLNLIQAYA+PMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEP LGQEVV
Sbjct: 696 RFSCSSWLNLIQAYASPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPALGQEVV 755
Query: 779 QFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTILVHVLLVAVV 838
Q+MLD+DTHVWSMRRSKANWFRV+G L+RAATLARWLDGIRTW H PTTIL+HV LVAV+
Sbjct: 756 QYMLDSDTHVWSMRRSKANWFRVLGWLSRAATLARWLDGIRTWVHPPTTILMHVFLVAVI 815
Query: 839 LS-----------------LRFRYRQRVPQNMDPRLSYVDVVGPDELDEEFDGFPTSRPS 881
L LRFRYR+RV +MD RLSY + + DELDEEFD FPT +
Sbjct: 816 LCPHLVLPTVFMYAFFIIVLRFRYRRRVLLSMDTRLSYAEAISADELDEEFDSFPTIKSX 875
Query: 882 EVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCLVASLVFYAV 941
+ VR RYDRLR LAGRAQTLLGD AAQGERLEALFNWRDPRAT +FVV CLVASLVFY V
Sbjct: 876 DQVRQRYDRLRILAGRAQTLLGDXAAQGERLEALFNWRDPRATGLFVVFCLVASLVFYTV 935
Query: 942 PFKLFVLGSGFYYLRHPRFRGDMPSVPVNFVRRLPSLSDQIL 983
PF+ FVLG GFYYLRHPRFRGDMPSVP NF RRLPSLSDQIL
Sbjct: 936 PFRAFVLGWGFYYLRHPRFRGDMPSVPFNFFRRLPSLSDQIL 977
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453812|ref|XP_004144650.1| PREDICTED: uncharacterized protein LOC101220129 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1511 bits (3911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 755/1013 (74%), Positives = 849/1013 (83%), Gaps = 49/1013 (4%)
Query: 1 MAESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEF 60
MA+SC RKL VEVCNAKNLMPKDGQGTASAY IVDF+GQRRRTKTKFRDLNPQWDE+ EF
Sbjct: 1 MADSCGRKLFVEVCNAKNLMPKDGQGTASAYAIVDFEGQRRRTKTKFRDLNPQWDEKHEF 60
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
LVHD E+M +EILE+NLYNDKKTGKRSTFLGKVK+AG++F+K GSES +YYPLEKRSVFS
Sbjct: 61 LVHDMEAMASEILEVNLYNDKKTGKRSTFLGKVKVAGTSFSKSGSESLIYYPLEKRSVFS 120
Query: 121 QIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAA--VADKPPEK-----AVGEEKKE 173
QIKGE+GLKVYY+DEDPPA AVAE KPE +KPPE + +E+++
Sbjct: 121 QIKGELGLKVYYVDEDPPA----GGAVAESEQKPETTPVAEEKPPENQEGKESKVKEEEK 176
Query: 174 EKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNA 233
++ + + + E+ E PPE NPKP E+P A PVEV+NPP+A ++KP
Sbjct: 177 KEEEKPKEEPKAEEKSNENPPE---NPKPEESP---AVEPEKPVEVENPPIAHTEKPKQM 230
Query: 234 KDKATVTETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKR-AGNVSNGS 292
+ + TE K +L +N+ ELRS DRSR AYDLVDRMPFLYVRV+KAKR + + + S
Sbjct: 231 RKAKSETE-KLADLSVNDLELRS---DRSRRAYDLVDRMPFLYVRVVKAKRESSDGGSSS 286
Query: 293 LYAKLVIGTHSIKTKSQADKDWDQVFAFDKEGLNSTSLEVSVWSEEKKENE-ECTENCLG 351
+YAKLVIGTHSIKTKSQ++KDWDQVFAFDKEGLNSTSLEVSVW+EEKKENE + ENCLG
Sbjct: 287 MYAKLVIGTHSIKTKSQSEKDWDQVFAFDKEGLNSTSLEVSVWAEEKKENEDQKAENCLG 346
Query: 352 TVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQADEAFQEAWQSDSGG 411
TV FDLQEVPKRVPPDSPLAPQWYSLES+K PGNDVMLAVW+GTQADEAFQEAWQSDSGG
Sbjct: 347 TVSFDLQEVPKRVPPDSPLAPQWYSLESDKSPGNDVMLAVWLGTQADEAFQEAWQSDSGG 406
Query: 412 LIPETRAKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTS 471
+IPETRAKVYLSPKLWYLRLTVIQTQDLQ S SEPK R+ ELYVKGQLG Q+FKTGRT+
Sbjct: 407 MIPETRAKVYLSPKLWYLRLTVIQTQDLQFDSASEPKSRNLELYVKGQLGPQVFKTGRTA 466
Query: 472 VGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQMSTVERRIDDRA 531
VG SANPTWNEDLVFVAAEPFEPFLVVTVEDVTNG SVG A+I M+++E+R DDR
Sbjct: 467 VG-----SANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGKSVGQAKIHMASIEKRTDDRT 521
Query: 532 EPKSRWFNLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLE 591
+ KSRWFNLVGDETRPY GRIHLR CLEGGYHVLDEAAHVTSDVRAAAKQLAK PIGLLE
Sbjct: 522 DTKSRWFNLVGDETRPYTGRIHLRICLEGGYHVLDEAAHVTSDVRAAAKQLAKPPIGLLE 581
Query: 592 VGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPC 651
VGIR A+NLLPVKTKDGTRGT DAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPC
Sbjct: 582 VGIRSASNLLPVKTKDGTRGTIDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPC 641
Query: 652 TVLTIGVFDNGRYKRDEAG----KPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGG 707
TVLTIGVFDNGRY R E +PGKD+RVGK+R+RLS+LD N+VY +YSLTVLLP G
Sbjct: 642 TVLTIGVFDNGRYTRQENDGVLKQPGKDLRVGKVRIRLSSLDINQVYSTAYSLTVLLPTG 701
Query: 708 AKKMGEIEIAVRFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLA 767
AKKMG++EIAVRF+ SWL+LIQ+Y+TP+LPRMHY+RPLGP QQDILRHTAMRIVT RLA
Sbjct: 702 AKKMGDLEIAVRFSTFSWLSLIQSYSTPILPRMHYIRPLGPTQQDILRHTAMRIVTTRLA 761
Query: 768 RSEPPLGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTT 827
RSEP +G EVVQ+MLD+DTHVWSMRRSKANWFRV+GCL+RA +ARW D IRTW H PTT
Sbjct: 762 RSEPAMGHEVVQYMLDSDTHVWSMRRSKANWFRVIGCLSRAVAIARWFDEIRTWVHPPTT 821
Query: 828 ILVHVLLVAVV-----------------LSLRFRYRQRVPQNMDPRLSYVDVVGPDELDE 870
+L+H+LL+AVV L+ RFRYR R NMDPRLSYVD V DELDE
Sbjct: 822 VLMHILLIAVVLCPNLILPTLFMYAFLILTFRFRYRHRTSHNMDPRLSYVDFVSTDELDE 881
Query: 871 EFDGFPTSRPSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVL 930
EFDGFP++R ++ +R+RYDRLRAL GRAQ LLGDVAAQGERLEALFNWRDPRAT IFVV+
Sbjct: 882 EFDGFPSARSADQIRVRYDRLRALGGRAQVLLGDVAAQGERLEALFNWRDPRATGIFVVI 941
Query: 931 CLVASLVFYAVPFKLFVLGSGFYYLRHPRFRGDMPSVPVNFVRRLPSLSDQIL 983
CL ASL+FYAVPFK F+ G GFYY RHPRFRGDMPSVP NF RRLPSLSDQ++
Sbjct: 942 CLGASLLFYAVPFKAFLFGFGFYYFRHPRFRGDMPSVPANFFRRLPSLSDQMI 994
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563570|ref|XP_003550034.1| PREDICTED: uncharacterized protein LOC100783437 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1509 bits (3908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/1005 (75%), Positives = 848/1005 (84%), Gaps = 40/1005 (3%)
Query: 1 MAESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEF 60
MAE R+L+VEVCNAKNLMPKDGQGTASAY IVDFDGQRRRTKTK RDLNPQWDE LEF
Sbjct: 1 MAEGSGRRLMVEVCNAKNLMPKDGQGTASAYAIVDFDGQRRRTKTKSRDLNPQWDETLEF 60
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
+VHD +SM +E LE+NLYNDK+TGKRSTFLGKVKI+GSTF K GSE+ VYYPLEKRSVFS
Sbjct: 61 IVHDKDSMTSETLEVNLYNDKRTGKRSTFLGKVKISGSTFVKSGSEAIVYYPLEKRSVFS 120
Query: 121 QIKGEIGLKVYYIDEDPPA---PAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPA 177
QIKGE+GLKV+Y++EDPP E A A PAT+ +K PE + EKKE+K
Sbjct: 121 QIKGELGLKVWYVEEDPPETENAGEEKAESAPPATE------EKLPENSQEGEKKEDK-- 172
Query: 178 TVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKA 237
E ++EEK KE++ + + + + A A P EV+NPP+AQ++KP K+K
Sbjct: 173 -AEETQDEEK-KEDENKPKEESKEEEKPKEEAPEAAVPPPEVENPPIAQTEKPKPPKEKH 230
Query: 238 TVTETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAGNVSNGSLYAKL 297
V K +L +++HELRSL DRSRSAYDLVDRMPFLYVRV+KAKRA + ++Y+KL
Sbjct: 231 -VEVQKRADLNVSDHELRSLRGDRSRSAYDLVDRMPFLYVRVVKAKRAKPETGSTVYSKL 289
Query: 298 VIGTHSIKTKSQAD-KDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLGTVLFD 356
VIGTHS+KT+S+++ KDWDQVFAFDKEGLNSTSLE+SVWSEE KE +E +E+ LGTV FD
Sbjct: 290 VIGTHSVKTRSESEGKDWDQVFAFDKEGLNSTSLEISVWSEEVKEGDEKSESSLGTVSFD 349
Query: 357 LQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQADEAFQEAWQSDSGGLIPET 416
LQEVPKRVPPDSPLAPQWY+LESE P NDVMLAVWIGTQADEAFQEAWQSDSGGLIPET
Sbjct: 350 LQEVPKRVPPDSPLAPQWYTLESETSPANDVMLAVWIGTQADEAFQEAWQSDSGGLIPET 409
Query: 417 RAKVYLSPKLWYLRLTVIQTQDLQPGS-GSEPKVRSPELYVKGQLGAQLFKTGRTSVGLS 475
RAKVYLSPKLWYLRLTVIQTQDLQ GS G E K R+PELYVK QLGAQ+FKTGR S G
Sbjct: 410 RAKVYLSPKLWYLRLTVIQTQDLQLGSEGPEAKARNPELYVKAQLGAQVFKTGRASPG-- 467
Query: 476 PSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQMSTVERRIDDRAEPKS 535
SANPTWNEDLVFVAAEPFEPFLVVTVEDV+N +VGHA++ +S++ERR DDR + KS
Sbjct: 468 ---SANPTWNEDLVFVAAEPFEPFLVVTVEDVSNSKTVGHAKVHVSSIERRTDDRTDSKS 524
Query: 536 RWFNLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIR 595
RWFNL ++ Y GRIH+R CLEGGYHV+DEAAHVTSDVRA+AKQLAK PIGLLEVGIR
Sbjct: 525 RWFNLASEDE--YTGRIHVRVCLEGGYHVIDEAAHVTSDVRASAKQLAKPPIGLLEVGIR 582
Query: 596 GATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLT 655
GA NLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTI+DRFNPRWNEQYTWDVYDPCTVLT
Sbjct: 583 GAANLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTIMDRFNPRWNEQYTWDVYDPCTVLT 642
Query: 656 IGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIE 715
IGVFDNGRYKR E GKP +D RVGKIRVRLSTLDTNRVY+NSYSLTVLLPGGAK+MGEIE
Sbjct: 643 IGVFDNGRYKRGEDGKPNRDCRVGKIRVRLSTLDTNRVYVNSYSLTVLLPGGAKRMGEIE 702
Query: 716 IAVRFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQ 775
IAVRF+CSSWL+L+QAYA+P+LPRMHYVRP GPAQQDILR TAMRIVTARLARSEP LGQ
Sbjct: 703 IAVRFSCSSWLSLMQAYASPILPRMHYVRPFGPAQQDILRQTAMRIVTARLARSEPALGQ 762
Query: 776 EVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTILVHVLLV 835
EVVQFMLD+DTHVWSMRRSKANWFRVVGCL+R ATL W+DGIRTW H PTT+LVHVLL
Sbjct: 763 EVVQFMLDSDTHVWSMRRSKANWFRVVGCLSRVATLLGWVDGIRTWVHPPTTVLVHVLLS 822
Query: 836 AVVLS-----------------LRFRYRQRVPQNMDPRLSYVDVVGPDELDEEFDGFPTS 878
A+VL LRFRYRQRVPQNMDPR+SYVD+V DELDEEFDGFPT+
Sbjct: 823 AIVLCPYLVLPTVFMYAFLILLLRFRYRQRVPQNMDPRMSYVDMVSLDELDEEFDGFPTT 882
Query: 879 RPSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCLVASLVF 938
RP+EVVRIRYDR+RALAGRAQTLLGD+AAQGERLEALF+WRDPRAT +F VLCLV SL+F
Sbjct: 883 RPAEVVRIRYDRVRALAGRAQTLLGDMAAQGERLEALFSWRDPRATGLFAVLCLVMSLLF 942
Query: 939 YAVPFKLFVLGSGFYYLRHPRFRGDMPSVPVNFVRRLPSLSDQIL 983
YAVPF+ VL +GFYYLRHPRFR DMPS+P NF RRLPS SDQI+
Sbjct: 943 YAVPFRGVVLVAGFYYLRHPRFRDDMPSIPANFFRRLPSFSDQIM 987
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449499441|ref|XP_004160818.1| PREDICTED: uncharacterized LOC101220129 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1492 bits (3862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 754/1008 (74%), Positives = 843/1008 (83%), Gaps = 39/1008 (3%)
Query: 1 MAESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEF 60
MA+SC RKL VEVCNAKNLMPKDGQGTASAY IVDF+GQRRRTKTKFRDLNPQWDE+ EF
Sbjct: 1 MADSCGRKLFVEVCNAKNLMPKDGQGTASAYAIVDFEGQRRRTKTKFRDLNPQWDEKHEF 60
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
LVHD E+M +EILE+NLYNDKKTGKRSTFLGKVK+AG++F+K GSES +YYPLEKRSVFS
Sbjct: 61 LVHDMEAMASEILEVNLYNDKKTGKRSTFLGKVKVAGTSFSKSGSESLIYYPLEKRSVFS 120
Query: 121 QIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEA--AVADKPPEKAVGEEKKEEKPAT 178
QIKGE+GLKVYY+DEDPPA AVAE KPE +KPPE G+E K ++
Sbjct: 121 QIKGELGLKVYYVDEDPPA----GGAVAESEQKPETTPVAEEKPPENQEGKESKVKEEEK 176
Query: 179 VEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKAT 238
E +K +E+PK E+ EN P A PVEV+NPP+A ++KP + +
Sbjct: 177 KEEEKPKEEPKAEEKSNENPPENPEPEESPAVE-PEKPVEVENPPIAHTEKPKQMRKAKS 235
Query: 239 VTETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKR-AGNVSNGSLYAKL 297
TE K +L +N+ ELRS DRSR AYDLVDRMPFLYVRV+K KR + + + S+YAKL
Sbjct: 236 ETE-KLADLSVNDLELRS---DRSRRAYDLVDRMPFLYVRVVKVKRESSDGGSSSMYAKL 291
Query: 298 VIGTHSIKTKSQADKDWDQVFAFDKEGLNSTSLEVSVWSEEKKENE-ECTENCLGTVLFD 356
VIGTHSIKTKSQ++KDWDQVFAFDKEGLNSTSLEVSVW+EEKKENE + ENCLGTV FD
Sbjct: 292 VIGTHSIKTKSQSEKDWDQVFAFDKEGLNSTSLEVSVWAEEKKENEDQKAENCLGTVSFD 351
Query: 357 LQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQADEAFQEAWQSDSGGLIPET 416
LQEVPKRVPPDSPLAPQWYSLES+K PGNDVMLAVW+GTQADEAFQEAWQSDSGG+IPET
Sbjct: 352 LQEVPKRVPPDSPLAPQWYSLESDKSPGNDVMLAVWLGTQADEAFQEAWQSDSGGMIPET 411
Query: 417 RAKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSP 476
RAKVYLSPKLWYLRLTVIQTQDLQ S SEPK R+ ELYVKGQLG Q+FKTGRT+VG
Sbjct: 412 RAKVYLSPKLWYLRLTVIQTQDLQFDSASEPKSRNLELYVKGQLGPQVFKTGRTAVG--- 468
Query: 477 SSSANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQMSTVERRIDDRAEPKSR 536
SANPTWNEDLVFVAAEPFEPFLVVTVEDVTNG SVG A+I M+++E+R DDR + KSR
Sbjct: 469 --SANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGKSVGQAKIHMASIEKRTDDRTDTKSR 526
Query: 537 WFNLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIRG 596
WFNLVGDETRPY GRIHLR CLEGGYHVLDEAAHVTSDVRAAAKQLAK PIGLLEVGIR
Sbjct: 527 WFNLVGDETRPYTGRIHLRICLEGGYHVLDEAAHVTSDVRAAAKQLAKPPIGLLEVGIRS 586
Query: 597 ATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTI 656
A+NLLPVKTKDGTRGT DAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTI
Sbjct: 587 ASNLLPVKTKDGTRGTIDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTI 646
Query: 657 GVFDNGRYKRDEAG----KPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMG 712
GVFDNGRY R E +PGKD+RVGK+R+RLS+LD N+VY +YSLTVLLP GAKKMG
Sbjct: 647 GVFDNGRYTRQENDGVLKQPGKDLRVGKVRIRLSSLDINQVYSTAYSLTVLLPTGAKKMG 706
Query: 713 EIEIAVRFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPP 772
++EIAVRF+ SWL+LIQ+Y+TP+LPRMHY+RPLGP QQDILRHTAMRIVT RLARSEP
Sbjct: 707 DLEIAVRFSTFSWLSLIQSYSTPILPRMHYIRPLGPTQQDILRHTAMRIVTTRLARSEPA 766
Query: 773 LGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTILVHV 832
+G EVVQ+MLD+DTHVWSMRRSKANWFRV+GCL+RA +ARW D IRTW H PTT+L+H+
Sbjct: 767 MGHEVVQYMLDSDTHVWSMRRSKANWFRVIGCLSRAVAIARWFDEIRTWVHPPTTVLMHI 826
Query: 833 LLVAVV-----------------LSLRFRYRQRVPQNMDPRLSYVDVVGPDELDEEFDGF 875
LL+AVV L+ RFRYR R NMDPRLSYVD V DELDEEFDGF
Sbjct: 827 LLIAVVLCPNLILPTLFMYAFLILTFRFRYRHRTSHNMDPRLSYVDFVSTDELDEEFDGF 886
Query: 876 PTSRPSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCLVAS 935
P++R ++ +R+RYDRLRAL GRAQ LLGDVAAQGERLEALFNWRDPRAT IFVV+CL AS
Sbjct: 887 PSARSADQIRVRYDRLRALGGRAQVLLGDVAAQGERLEALFNWRDPRATGIFVVICLGAS 946
Query: 936 LVFYAVPFKLFVLGSGFYYLRHPRFRGDMPSVPVNFVRRLPSLSDQIL 983
L+FYAVPFK F+ G GFYY RHPRFRGDMPSVP NF RRLPSLSDQ++
Sbjct: 947 LLFYAVPFKAFLFGFGFYYFRHPRFRGDMPSVPANFFRRLPSLSDQMI 994
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511907|ref|XP_003524663.1| PREDICTED: uncharacterized protein LOC100807205 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1481 bits (3834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 746/1002 (74%), Positives = 837/1002 (83%), Gaps = 49/1002 (4%)
Query: 1 MAESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEF 60
MAE RKL+VEVCNAKNLMPKDGQGTASAY IVDFDGQRRRTKTK RDLNPQWDE+LEF
Sbjct: 1 MAEGAGRKLMVEVCNAKNLMPKDGQGTASAYAIVDFDGQRRRTKTKSRDLNPQWDEKLEF 60
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
+VHD +SMP+E LE+N+YNDK+TGKRSTFLGKVKI+GSTF K GSE+ VYYPLEKRSVFS
Sbjct: 61 IVHDKDSMPSETLEVNIYNDKRTGKRSTFLGKVKISGSTFVKSGSEAIVYYPLEKRSVFS 120
Query: 121 QIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVE 180
QIKGE+GLKV+Y+++DPP + GEEK E PA E
Sbjct: 121 QIKGELGLKVWYVEDDPPE------------------------TENAGEEKAESAPAAEE 156
Query: 181 GKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVT 240
E+EK ++E P+E + + + A A A P EV+NPP+AQ++KP K+K
Sbjct: 157 KPPEKEKKEDENKPKEESKEEKPKEEATAEAAAPPPPEVENPPIAQTEKPKPPKEKHGEV 216
Query: 241 ETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAGNVSNGSLYAKLVIG 300
+ K +L +++HELRSL DRS SAYDLVDRMPFLYVRV+KAKR + ++Y+KLVIG
Sbjct: 217 Q-KRADLNVSDHELRSLRGDRSCSAYDLVDRMPFLYVRVVKAKRPKPETGSTVYSKLVIG 275
Query: 301 THSIKTKSQAD-KDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQE 359
THS+KT+S+++ KDWDQVFAFDKEGLNSTSLEVSVWSEE KE +E +E+ LGTV FDLQE
Sbjct: 276 THSVKTRSESEGKDWDQVFAFDKEGLNSTSLEVSVWSEEVKEGDEKSESSLGTVSFDLQE 335
Query: 360 VPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQADEAFQEAWQSDSGGLIPETRAK 419
VPKRVPPDSPLAPQWY+LESE PGNDVMLAVWIGTQADEAFQEAWQSDSGGLIPETRAK
Sbjct: 336 VPKRVPPDSPLAPQWYTLESETSPGNDVMLAVWIGTQADEAFQEAWQSDSGGLIPETRAK 395
Query: 420 VYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSS 479
VYLSPKLWYLRLTVIQTQDLQ GSG E K R+PELYVK QLGAQ+FKTGR S G S
Sbjct: 396 VYLSPKLWYLRLTVIQTQDLQLGSGPEAKARNPELYVKAQLGAQVFKTGRASPG-----S 450
Query: 480 ANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQMSTVERRIDDRAEPKSRWFN 539
ANPTWNEDLVFVAAEPFEPFLVVTVEDV+N +VGHA++ ++++ERR DDR +PKSRWFN
Sbjct: 451 ANPTWNEDLVFVAAEPFEPFLVVTVEDVSNSKTVGHAKLHVASIERRTDDRTDPKSRWFN 510
Query: 540 LVG-DETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIRGAT 598
L DE+ Y GRIH+R CLEGGYHV+DE AHVTSDVRA+AKQLAK PIGLLEVGIRGA
Sbjct: 511 LSSEDESNSYTGRIHVRVCLEGGYHVIDETAHVTSDVRASAKQLAKPPIGLLEVGIRGAA 570
Query: 599 NLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGV 658
NLLPVKT DGTRGTTDAYVVAKYGPKWVRTRTI+DRFNPRWNEQYTWDV+DPCTVLTIGV
Sbjct: 571 NLLPVKTNDGTRGTTDAYVVAKYGPKWVRTRTIMDRFNPRWNEQYTWDVFDPCTVLTIGV 630
Query: 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAV 718
FDNGRYKR E G+P +D RVGK+RVRLSTLDTNRVY+NSYSL VLLP GAK+MGEIEIAV
Sbjct: 631 FDNGRYKRGEDGEPNRDCRVGKVRVRLSTLDTNRVYVNSYSLVVLLPSGAKRMGEIEIAV 690
Query: 719 RFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVV 778
RF+CSSWL+L+QAYA+P+LPRMHYVRP GPAQQDILR TAM+IVTARLARSEP LGQEVV
Sbjct: 691 RFSCSSWLSLMQAYASPILPRMHYVRPFGPAQQDILRQTAMKIVTARLARSEPALGQEVV 750
Query: 779 QFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTILVHVLLVAVV 838
QFMLD+DTHVWSMRRSKANWFRVVGCL+R ATL W+DGIRTW H P T+LVHVLL A+V
Sbjct: 751 QFMLDSDTHVWSMRRSKANWFRVVGCLSRVATLLGWVDGIRTWVHPPRTVLVHVLLAAIV 810
Query: 839 LS-----------------LRFRYRQRVPQNMDPRLSYVDVVGPDELDEEFDGFPTSRPS 881
L LRFRYR RVPQNMDPR+SYVD+V DELDEEFDGFPT+RP+
Sbjct: 811 LCPYLLLPTVFMYAFLILVLRFRYRHRVPQNMDPRMSYVDMVSLDELDEEFDGFPTTRPA 870
Query: 882 EVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCLVASLVFYAV 941
EVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALF+WRDPRAT +F VLCLV SL+FYAV
Sbjct: 871 EVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFSWRDPRATGLFAVLCLVMSLLFYAV 930
Query: 942 PFKLFVLGSGFYYLRHPRFRGDMPSVPVNFVRRLPSLSDQIL 983
PF+ FVL +GFYYLRHPRFR DMPS+P NF RRLPS SDQI+
Sbjct: 931 PFRGFVLVAGFYYLRHPRFRDDMPSIPANFFRRLPSFSDQIM 972
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228607|ref|NP_187018.1| C2 and plant phosphoribosyltransferase domain-containing protein [Arabidopsis thaliana] gi|6091755|gb|AAF03465.1|AC009327_4 putative phosphoribosylanthranilate transferase [Arabidopsis thaliana] gi|332640450|gb|AEE73971.1| C2 and plant phosphoribosyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1480 bits (3832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 756/1022 (73%), Positives = 839/1022 (82%), Gaps = 44/1022 (4%)
Query: 1 MAESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEF 60
MA++ RKLIVE+C+A+NLMPKDGQGTASAY IVDFDGQRRRTKTKFRDLNPQWDE+LEF
Sbjct: 1 MADNVLRKLIVEICSARNLMPKDGQGTASAYAIVDFDGQRRRTKTKFRDLNPQWDEKLEF 60
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
VHD +M EILEINL NDKKTGKRSTFLGKVKIAGS FA GSE+ VYYPLEKRSVFS
Sbjct: 61 FVHDVATMGEEILEINLCNDKKTGKRSTFLGKVKIAGSAFASAGSETLVYYPLEKRSVFS 120
Query: 121 QIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVE 180
QIKGEIGLK YY+DE+ P A A EP + AA +KPPE A E+ K+E A
Sbjct: 121 QIKGEIGLKAYYVDEN----PPAAPAATEPKPEAAAATEEKPPEIAKAEDGKKETEAAKT 176
Query: 181 GKKEEEKPK-----------EEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDK 229
+K+E K +EK P+ + K A+ P A A P EV+NPP+ Q +
Sbjct: 177 EEKKEGDKKEEEKPKEEAKPDEKKPDAPPDTK-AKKPDTAVAPPPPPAEVKNPPIPQKAE 235
Query: 230 PSNAKDKATVTET-KTQELRLNEHELRSLTSDRSRSA-YDLVDRMPFLYVRVLKAKRAGN 287
+ E Q+L ++ EL SLT D++R YDLVDRMPFLY+RV KAKRA N
Sbjct: 236 TVKQNELGIKPENVNRQDLIGSDLELPSLTRDQNRGGGYDLVDRMPFLYIRVAKAKRAKN 295
Query: 288 VSNGSLYAKLVIGTHSIKTKSQADKDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEE--- 344
+ +YAKLVIGT+ +KT+SQ KDWDQVFAF+KE LNSTSLEVSVWSEEK E E+
Sbjct: 296 DGSNPVYAKLVIGTNGVKTRSQTGKDWDQVFAFEKESLNSTSLEVSVWSEEKIEKEDKTT 355
Query: 345 -CTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQADEAFQE 403
TE+CLGTV FDLQEVPKRVPPDSPLAPQWY+LESEK PGNDVMLAVW+GTQADEAFQE
Sbjct: 356 TTTESCLGTVSFDLQEVPKRVPPDSPLAPQWYTLESEKSPGNDVMLAVWLGTQADEAFQE 415
Query: 404 AWQSDSGGLIPETRAKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSP--ELYVKGQLG 461
AWQSDSGGLIPETR+KVYLSPKLWYLRLTVIQTQDLQ G GSE K + P ELYVK QLG
Sbjct: 416 AWQSDSGGLIPETRSKVYLSPKLWYLRLTVIQTQDLQLGLGSEAKSKIPTTELYVKAQLG 475
Query: 462 AQLFKTGRTSVGLSPSSSA--NPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQ 519
Q+FKT RTS+G S SSS NPTWNEDLVFVA+EPFEPFL+VTVED+TNG S+G +I
Sbjct: 476 PQVFKTARTSIGPSASSSGSGNPTWNEDLVFVASEPFEPFLIVTVEDITNGQSIGQTKIH 535
Query: 520 MSTVERRIDDRAEPKSRWFNLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAA 579
M +VERR DDR EPKSRWFNL GDE +PY+GRIH++ CLEGGYHVLDEAAHVTSDVR +A
Sbjct: 536 MGSVERRNDDRTEPKSRWFNLAGDEKKPYSGRIHVKVCLEGGYHVLDEAAHVTSDVRPSA 595
Query: 580 KQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRW 639
KQLAK PIGLLEVGIRGATNLLPVKT+DGTRGTTDAYVVAKYGPKW+RTRTILDRFNPRW
Sbjct: 596 KQLAKPPIGLLEVGIRGATNLLPVKTRDGTRGTTDAYVVAKYGPKWIRTRTILDRFNPRW 655
Query: 640 NEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYS 699
NEQYTWDVYDPCTVLTIGVFDNGRYKRDE+GK G+DVRVGKIRVRLSTLD NR+YLNSY+
Sbjct: 656 NEQYTWDVYDPCTVLTIGVFDNGRYKRDESGKQGRDVRVGKIRVRLSTLDMNRIYLNSYT 715
Query: 700 LTVLLPGGAKKMGEIEIAVRFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAM 759
LTV+LP GAKKMGE+EIAVRF+C SWL++IQAY TPMLPRMHYVRPLGPAQQDILRHTAM
Sbjct: 716 LTVILPSGAKKMGEVEIAVRFSCPSWLSIIQAYVTPMLPRMHYVRPLGPAQQDILRHTAM 775
Query: 760 RIVTARLARSEPPLGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIR 819
RIVTARLARSEPPLGQEVVQ+MLDTD HVWSMRRSKANWFRV+ L+RAAT+ARW+ GIR
Sbjct: 776 RIVTARLARSEPPLGQEVVQYMLDTDNHVWSMRRSKANWFRVITFLSRAATIARWIHGIR 835
Query: 820 TWAHTPTTILVHVLLVAVV-----------------LSLRFRYRQRVPQN-MDPRLSYVD 861
TW H PTT+LVH+LLVA+V L+LRFRYR RV N +DPRLS VD
Sbjct: 836 TWVHPPTTVLVHLLLVAIVLCPHLVLPTVFMYAFLILALRFRYRGRVKVNSVDPRLSCVD 895
Query: 862 VVGPDELDEEFDGFPTSRPSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDP 921
V PDELDEEFDGFPT+R EVVRIRYDRLRALAGRAQTLLGDVAAQGER+EALFNWRDP
Sbjct: 896 SVAPDELDEEFDGFPTTRQPEVVRIRYDRLRALAGRAQTLLGDVAAQGERVEALFNWRDP 955
Query: 922 RATWIFVVLCLVASLVFYAVPFKLFVLGSGFYYLRHPRFRGDMPSVPVNFVRRLPSLSDQ 981
RAT IFVV CL AS +FY VPFK+F+LGSGFYY+RHPRFR DMPSVPVNF RRLPS+SDQ
Sbjct: 956 RATCIFVVFCLFASFLFYIVPFKVFLLGSGFYYIRHPRFRDDMPSVPVNFFRRLPSMSDQ 1015
Query: 982 IL 983
IL
Sbjct: 1016 IL 1017
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 983 | ||||||
| TAIR|locus:2096409 | 1017 | AT3G03680 "AT3G03680" [Arabido | 0.620 | 0.599 | 0.761 | 0.0 | |
| TAIR|locus:2019070 | 1081 | QKY "AT1G74720" [Arabidopsis t | 0.514 | 0.468 | 0.549 | 1.5e-236 | |
| TAIR|locus:2161523 | 1049 | AT5G17980 [Arabidopsis thalian | 0.587 | 0.551 | 0.472 | 2.4e-221 | |
| TAIR|locus:2020280 | 1012 | AT1G04150 "AT1G04150" [Arabido | 0.586 | 0.570 | 0.473 | 3.1e-219 | |
| TAIR|locus:2139727 | 1011 | AT4G11610 "AT4G11610" [Arabido | 0.562 | 0.546 | 0.480 | 1.1e-214 | |
| TAIR|locus:2162712 | 1036 | AT5G48060 "AT5G48060" [Arabido | 0.600 | 0.569 | 0.464 | 2.5e-213 | |
| TAIR|locus:2009492 | 1029 | AT1G22610 "AT1G22610" [Arabido | 0.598 | 0.571 | 0.446 | 9.7e-210 | |
| TAIR|locus:2095853 | 773 | AT3G57880 "AT3G57880" [Arabido | 0.563 | 0.716 | 0.520 | 2.5e-199 | |
| TAIR|locus:2182305 | 769 | AT5G12970 "AT5G12970" [Arabido | 0.561 | 0.717 | 0.508 | 7.5e-198 | |
| TAIR|locus:2017627 | 776 | AT1G51570 [Arabidopsis thalian | 0.565 | 0.716 | 0.506 | 4.7e-196 |
| TAIR|locus:2096409 AT3G03680 "AT3G03680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2469 (874.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 472/620 (76%), Positives = 522/620 (84%)
Query: 219 VQNPPLAQSDKPSNAKDKATVTET-KTQELRLNEHELRSLTSDRSRSA-YDLVDRMPFLY 276
V+NPP+ Q + + E Q+L ++ EL SLT D++R YDLVDRMPFLY
Sbjct: 225 VKNPPIPQKAETVKQNELGIKPENVNRQDLIGSDLELPSLTRDQNRGGGYDLVDRMPFLY 284
Query: 277 VRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQADKDWDQVFAFDKEGLNSTSLXXXXXX 336
+RV KAKRA N + +YAKLVIGT+ +KT+SQ KDWDQVFAF+KE LNSTSL
Sbjct: 285 IRVAKAKRAKNDGSNPVYAKLVIGTNGVKTRSQTGKDWDQVFAFEKESLNSTSLEVSVWS 344
Query: 337 XXXXX----XXXXXXXXLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVW 392
LGTV FDLQEVPKRVPPDSPLAPQWY+LESEK PGNDVMLAVW
Sbjct: 345 EEKIEKEDKTTTTTESCLGTVSFDLQEVPKRVPPDSPLAPQWYTLESEKSPGNDVMLAVW 404
Query: 393 IGTQADEAFQEAWQSDSGGLIPETRAKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSP 452
+GTQADEAFQEAWQSDSGGLIPETR+KVYLSPKLWYLRLTVIQTQDLQ G GSE K + P
Sbjct: 405 LGTQADEAFQEAWQSDSGGLIPETRSKVYLSPKLWYLRLTVIQTQDLQLGLGSEAKSKIP 464
Query: 453 --ELYVKGQLGAQLFKTGRTSVGLSPSSSA--NPTWNEDLVFVAAEPFEPFLVVTVEDVT 508
ELYVK QLG Q+FKT RTS+G S SSS NPTWNEDLVFVA+EPFEPFL+VTVED+T
Sbjct: 465 TTELYVKAQLGPQVFKTARTSIGPSASSSGSGNPTWNEDLVFVASEPFEPFLIVTVEDIT 524
Query: 509 NGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDETRPYAGRIHLRACLEGGYHVLDEA 568
NG S+G +I M +VERR DDR EPKSRWFNL GDE +PY+GRIH++ CLEGGYHVLDEA
Sbjct: 525 NGQSIGQTKIHMGSVERRNDDRTEPKSRWFNLAGDEKKPYSGRIHVKVCLEGGYHVLDEA 584
Query: 569 AHVTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRT 628
AHVTSDVR +AKQLAK PIGLLEVGIRGATNLLPVKT+DGTRGTTDAYVVAKYGPKW+RT
Sbjct: 585 AHVTSDVRPSAKQLAKPPIGLLEVGIRGATNLLPVKTRDGTRGTTDAYVVAKYGPKWIRT 644
Query: 629 RTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL 688
RTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE+GK G+DVRVGKIRVRLSTL
Sbjct: 645 RTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDESGKQGRDVRVGKIRVRLSTL 704
Query: 689 DTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCSSWLNLIQAYATPMLPRMHYVRPLGP 748
D NR+YLNSY+LTV+LP GAKKMGE+EIAVRF+C SWL++IQAY TPMLPRMHYVRPLGP
Sbjct: 705 DMNRIYLNSYTLTVILPSGAKKMGEVEIAVRFSCPSWLSIIQAYVTPMLPRMHYVRPLGP 764
Query: 749 AQQDILRHTAMRIVTARLARSEPPLGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRA 808
AQQDILRHTAMRIVTARLARSEPPLGQEVVQ+MLDTD HVWSMRRSKANWFRV+ L+RA
Sbjct: 765 AQQDILRHTAMRIVTARLARSEPPLGQEVVQYMLDTDNHVWSMRRSKANWFRVITFLSRA 824
Query: 809 ATLARWLDGIRTWAHTPTTI 828
AT+ARW+ GIRTW H PTT+
Sbjct: 825 ATIARWIHGIRTWVHPPTTV 844
|
|
| TAIR|locus:2019070 QKY "AT1G74720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1434 (509.9 bits), Expect = 1.5e-236, Sum P(3) = 1.5e-236
Identities = 296/539 (54%), Positives = 359/539 (66%)
Query: 313 DWDQVFAFDKEGLNSTSLXXXXXXXXXXXXXXXXXXXLGTVLFDLQEVPKRVPPDSPLAP 372
+W+QVFA G N + LG V FDL EVP R PPDSPLAP
Sbjct: 381 EWNQVFAL---GHNRSDSAVTGATLEISAWDASSESFLGGVCFDLSEVPVRDPPDSPLAP 437
Query: 373 QWYSLESEKLPGN------DVMLAVWIGTQADEAFQEAWQSDSGGLIPETRAKVYLSPKL 426
QWY LE N D+ L+VWIGTQ DEAF EAW SD+ + TR+KVY SPKL
Sbjct: 438 QWYRLEGSGADQNSGRISGDIQLSVWIGTQVDEAFPEAWSSDAPH-VAHTRSKVYQSPKL 496
Query: 427 WYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNE 486
WYLR+TV++ QDL P + +PE+ VK QLG F++ RT G + S + W+E
Sbjct: 497 WYLRVTVLEAQDLHIAPNLPP-LTAPEIRVKAQLG---FQSARTRRGSMNNHSGSFHWHE 552
Query: 487 DLVFVAAEPFEPFLVVTVEDVTN--GCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDE 544
D++FVA EP E LV+ VED T +GHA I +S++E+RID+R P S+W L G+
Sbjct: 553 DMIFVAGEPLEDCLVLMVEDRTTKEATLLGHAMIPVSSIEQRIDERFVP-SKWHTLEGEG 611
Query: 545 TR--------------PYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLL 590
PY GRI LR CLEGGYHVL+EAAHV SD R AKQL K PIG+L
Sbjct: 612 GGGGGGGGPGGGGGGGPYCGRISLRLCLEGGYHVLEEAAHVCSDFRPTAKQLWKPPIGIL 671
Query: 591 EVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP 650
E+GI GA LLP+K K+G +G+TDAY VAKYG KWVRTRTI D F+PRW+EQYTW VYDP
Sbjct: 672 ELGILGARGLLPMKAKNGGKGSTDAYCVAKYGKKWVRTRTITDSFDPRWHEQYTWQVYDP 731
Query: 651 CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKK 710
CTVLT+GVFDN R D A D R+GKIR+R+STL++N+VY NSY L VLLP G KK
Sbjct: 732 CTVLTVGVFDNWRMFSD-ASDDRPDTRIGKIRIRVSTLESNKVYTNSYPLLVLLPSGMKK 790
Query: 711 MGEIEIAVRFTCSSWL-NLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARS 769
MGEIE+AVRF C S L ++ AY P+LPRMHY+RPLG AQQD LR A ++V A LAR+
Sbjct: 791 MGEIEVAVRFACPSLLPDVCAAYGQPLLPRMHYIRPLGVAQQDALRGAATKMVAAWLARA 850
Query: 770 EPPLGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTI 828
EPPLG EVV++MLD D+H WSMR+SKANW+R+VG L A LA+WLD IR W + TT+
Sbjct: 851 EPPLGPEVVRYMLDADSHAWSMRKSKANWYRIVGVLAWAVGLAKWLDNIRRWRNPVTTV 909
|
|
| TAIR|locus:2161523 AT5G17980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1376 (489.4 bits), Expect = 2.4e-221, Sum P(3) = 2.4e-221
Identities = 288/610 (47%), Positives = 402/610 (65%)
Query: 238 TVTETKT--QELRLNEHELRSLTSDRS------RSAYDLVDRMPFLYVRVLKAKRAGNVS 289
++ ETK Q LR + E S TS+ S RS +DLV++M ++++RV+KA+ +
Sbjct: 280 SIPETKNGPQPLRRSVSETASYTSEISDVSTIERSTFDLVEKMHYVFIRVVKARSLP--T 337
Query: 290 NGSLYAKLVIGTHSIKTKSQADK---DWDQVFAFDKEGLNSTSLXXXXXXXXXXXXXXXX 346
+GS K+ + I++K +WDQ FAF ++ + +S
Sbjct: 338 SGSPVTKISLSGTMIQSKPARKTSCFEWDQTFAFLRDSPDLSSSPILEISVWDSSTGIET 397
Query: 347 XXXLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQADEAFQEAWQ 406
LG + FD+ E+P R PPDSPLAPQWY LE +D+MLA W GTQADE+F +AW+
Sbjct: 398 SQFLGGICFDVSEIPLRDPPDSPLAPQWYRLEGGGAHNSDLMLATWTGTQADESFPDAWK 457
Query: 407 SDSGGLIPETRAKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFK 466
+D+ G + RAKVY+S KLWYLR TVI+ QDL P + K S +L K QLG+Q+ K
Sbjct: 458 TDTAGNVT-ARAKVYMSSKLWYLRATVIEAQDLLPPQLTAFKEASFQL--KAQLGSQVQK 514
Query: 467 TGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVTN-G-CSVGHARIQMSTVE 524
T +++V + + P+WNEDL+FVAAEPF LV T+E T+ G +VG AR+ +S +E
Sbjct: 515 T-KSAV----TRNGAPSWNEDLLFVAAEPFSDQLVFTLEYRTSKGPVTVGMARVPLSAIE 569
Query: 525 RRIDDRAEPKSRWFNLV--GDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQL 582
RR+DDR SRW L DE R R+H+R C +GGYHV+DEAAHV SD R A+QL
Sbjct: 570 RRVDDRLVA-SRWLGLEDPNDEKRGNRSRVHIRLCFDGGYHVMDEAAHVCSDYRPTARQL 628
Query: 583 AKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQ 642
K +G++E+GI G NLLP+KT +G +G+TDAY VAKYG KWVRTRT+ D +P+WNEQ
Sbjct: 629 WKPAVGIVELGIIGCKNLLPMKTVNG-KGSTDAYTVAKYGSKWVRTRTVSDSLDPKWNEQ 687
Query: 643 YTWDVYDPCTVLTIGVFDN-GRYKRDEAGKPG--KDVRVGKIRVRLSTLDTNRVYLNSYS 699
YTW VYDPCTVLTIGVFD+ G Y+ D GK +D+R+GK+R+R+STL+T + Y N+Y
Sbjct: 688 YTWKVYDPCTVLTIGVFDSWGVYEVD-GGKEATRQDLRIGKVRIRISTLETGKAYRNTYP 746
Query: 700 LTVLLPGGAKKMGEIEIAVRFTCSSW-LNLIQAYATPMLPRMHYVRPLGPAQQDILRHTA 758
L +L+ GG KK+GEIE+AVRF ++ L+ + Y P+LP MH+++PL Q+D+LR+TA
Sbjct: 747 LLMLVNGGVKKLGEIELAVRFVRTAPPLDFLHVYTQPLLPLMHHIKPLSLFQEDMLRNTA 806
Query: 759 MRIVTARLARSEPPLGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGI 818
++I+ A L+RSEPPL E+V++MLD DTH +SMR+ +ANW R+V + + RW+D
Sbjct: 807 VKILAAHLSRSEPPLRPEIVRYMLDADTHTFSMRKVRANWLRIVNVVAGMVDVVRWVDDT 866
Query: 819 RTWAHTPTTI 828
R W + +T+
Sbjct: 867 RFWKNPTSTL 876
|
|
| TAIR|locus:2020280 AT1G04150 "AT1G04150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1388 (493.7 bits), Expect = 3.1e-219, Sum P(3) = 3.1e-219
Identities = 291/614 (47%), Positives = 398/614 (64%)
Query: 231 SNAKDKATVTETKTQELRLNEHELRSLTS--DRSRSAYDLVDRMPFLYVRVLKAKRAGNV 288
SN + ++ ETK L + L L+S D++ S YDLV++M +LYV ++KAK +
Sbjct: 236 SNGSSEFSLKETKPC-LGGTSNGLGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDLSVL 294
Query: 289 SNGSLYAKLVIGTHSIKTK----SQADKDWDQVFAFDKEGLNSTSLXXXXXXXXXXXXXX 344
G + +++ +G + TK + ++ +W+QVF F KE + S+ +
Sbjct: 295 --GEVVSEVKLGNYRGVTKKVSSNSSNPEWNQVFVFSKERIQSSVVELFVKEGNKDEYT- 351
Query: 345 XXXXXLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLP-GN-DVMLAVWIGTQADEAFQ 402
G VLFDL E+P RVPPDSPLAPQWY +E+ GN ++M++VW GTQADEAF
Sbjct: 352 ------GRVLFDLSEIPTRVPPDSPLAPQWYKIENRNGGRGNGELMVSVWFGTQADEAFA 405
Query: 403 EAWQSDSGGL-IPET---RAKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKG 458
EAW S +G + I E ++KVYLSPKLWYLR++VI+ QD+ +R PEL K
Sbjct: 406 EAWHSKAGNVHIEELSSIKSKVYLSPKLWYLRISVIEAQDVAIMDKGSSLMRFPELSAKL 465
Query: 459 QLGAQLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVTNG-------- 510
Q+G+Q+ +T S + S +NP WNEDL+FV AEPFE + V VED NG
Sbjct: 466 QVGSQILRTAIASA-IPTKSFSNPYWNEDLMFVVAEPFEDCVTVVVEDRLNGGAIGGQND 524
Query: 511 CSVGHARIQMSTVERRIDDRAEPKSRWFNLV-GDETRPYAGRIHLRACLEGGYHVLDEAA 569
+VG +I +S VERR D SRWF+L G+ + RIHLR L+GGYHVLDEA
Sbjct: 525 VAVGRVQIPISAVERRTGDTLVG-SRWFSLDNGNNNNRFGSRIHLRLSLDGGYHVLDEAT 583
Query: 570 HVTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGT-RGTTDAYVVAKYGPKWVRT 628
SDVR AK+L K +GLLE+GI AT L+P+K +DG G D+Y VAKYGPKWVRT
Sbjct: 584 MYNSDVRPTAKELWKPQVGLLEIGILSATGLMPMKVRDGKCGGIADSYCVAKYGPKWVRT 643
Query: 629 RTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL 688
RT++D P+WNEQYTW+VYDPCTV+T+GVFDN R + + DVR+GK+R+RLSTL
Sbjct: 644 RTVVDSLCPKWNEQYTWEVYDPCTVVTVGVFDNARVNENNNSR---DVRIGKVRIRLSTL 700
Query: 689 DTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCSSWLNLIQAYATPMLPRMHYVRPLGP 748
+T RVY +SY L VL P G KK GE+ +AVR +C + +N++ YA P+LP+MHY +PLG
Sbjct: 701 ETGRVYTHSYPLIVLHPSGVKKTGELHLAVRLSCGNAVNMLHMYALPLLPKMHYTQPLGV 760
Query: 749 AQQDILRHTAMRIVTARLARSEPPLGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRA 808
+ LR+ + V ARL+R+EPPLG+EVV++MLD D HVWSMRRSKAN+FR+V ++
Sbjct: 761 HMLERLRYQTLNAVAARLSRAEPPLGREVVEYMLDHDFHVWSMRRSKANFFRLVNVISGL 820
Query: 809 ATLARWLDGIRTWA 822
+A+ ++ +R+W+
Sbjct: 821 VAVAKLVEVMRSWS 834
|
|
| TAIR|locus:2139727 AT4G11610 "AT4G11610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1362 (484.5 bits), Expect = 1.1e-214, Sum P(3) = 1.1e-214
Identities = 289/602 (48%), Positives = 394/602 (65%)
Query: 255 RSLTSDRSR-SAYDLVDRMPFLYVRVLKAKRAGNVS-NGSL--YAKLVIGTHSIKTK--- 307
R + D++ S YDLV+RM FLYVRV+KA+ + GS+ + ++ +G + T+
Sbjct: 259 RVIHKDKTATSTYDLVERMYFLYVRVVKARELPIMDITGSVDPFVEVRVGNYKGITRHFE 318
Query: 308 SQADKDWDQVFAFDKEGLNSTSLXXXXXXXXXXXXXXXXXXXLGTVLFDLQEVPKRVPPD 367
+ +W+QVFAF KE + ++ L +G V FD+ +VP RVPPD
Sbjct: 319 KRQHPEWNQVFAFAKERMQASVLEVVVKDKDLLKDDY-----VGFVRFDINDVPLRVPPD 373
Query: 368 SPLAPQWYSLES---EKLPGNDVMLAVWIGTQADEAFQEAWQSD-------SGGLIPETR 417
SPLAPQWY LE EK+ G ++MLAVWIGTQADEAF +AW SD S + R
Sbjct: 374 SPLAPQWYRLEDKKGEKIKG-ELMLAVWIGTQADEAFSDAWHSDAAMPVDCSPAISAVLR 432
Query: 418 AKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPS 477
+KVY +P+LWY+R+ VI+ QDL P K R P++YVK QLG Q+ KT +
Sbjct: 433 SKVYHAPRLWYVRVNVIEAQDLIPTD----KTRFPDVYVKAQLGNQVMKTRPCQ-----A 483
Query: 478 SSANPTWNEDLVFVAAEPFEPFLVVTVED-VTNGCS--VGHARIQMSTVERRIDDRAEPK 534
+ WNED +FV AEPFE LV+TVED V G VG I ++TVE+R DD
Sbjct: 484 RTLGAVWNEDFLFVVAEPFEDHLVLTVEDRVAPGKDEIVGRTYIPLNTVEKRADDHMI-H 542
Query: 535 SRWFNL----VGD----ETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSP 586
+RW+NL + D + ++ RIHLR CLEGGYHVLDE+ H +SD+R +A+ L + P
Sbjct: 543 ARWYNLERPVIVDVDQLKREKFSMRIHLRVCLEGGYHVLDESTHYSSDLRPSARPLWRQP 602
Query: 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWD 646
IG+LE+GI A L P+KT++G RGT+D + V KYG KWVRTRT++D P++NEQYTW+
Sbjct: 603 IGVLELGILNAVGLHPMKTREG-RGTSDTFCVGKYGQKWVRTRTMVDNLCPKYNEQYTWE 661
Query: 647 VYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPG 706
V+DP TVLT+GVFDNG+ E G +DV++GKIR+RLSTL+T R+Y +SY L VL P
Sbjct: 662 VFDPATVLTVGVFDNGQL--GEKGN--RDVKIGKIRIRLSTLETGRIYTHSYPLLVLHPT 717
Query: 707 GAKKMGEIEIAVRFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARL 766
G KKMGE+ +AVRFTC S+ N++ Y+ P+LP+MHYVRP QQD+LRH A+ IV ARL
Sbjct: 718 GVKKMGELHMAVRFTCISFANMLYQYSKPLLPKMHYVRPFSVMQQDMLRHQAVNIVAARL 777
Query: 767 ARSEPPLGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPT 826
R+EPPL +E+++FM DTD+H+WSMR+SKAN+FR++ + + +W I +W + T
Sbjct: 778 GRAEPPLRKEIIEFMSDTDSHLWSMRKSKANFFRMMTVFSGVIAVGKWFSDICSWRNPIT 837
Query: 827 TI 828
T+
Sbjct: 838 TV 839
|
|
| TAIR|locus:2162712 AT5G48060 "AT5G48060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1385 (492.6 bits), Expect = 2.5e-213, Sum P(3) = 2.5e-213
Identities = 297/639 (46%), Positives = 401/639 (62%)
Query: 220 QNPPLAQSDKPSNAKDKATVTETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRV 279
QNP QS ++ D + K L L E +R YDLV++M +LYVRV
Sbjct: 245 QNPNHLQSYGDTDLDD----FKVKDMNLDLGERWPNPNAGERFTGTYDLVEQMFYLYVRV 300
Query: 280 LKAKRA--GNVSNG-SLYAKLVIGTHSIKTKSQADK----DWDQVFAFDKEGLNSTSLXX 332
+KAK G+++ G Y ++ +G + +TK K +W+QVFAF KE + S+ L
Sbjct: 301 VKAKELPPGSITGGCDPYVEVKLGNYKGRTKIFDRKTTIPEWNQVFAFTKERIQSSVLEV 360
Query: 333 XXXXXXXXXXXXXXXXXLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGN----DVM 388
LG V+FDL E+P RVPP+SPLAPQWY LE + G ++M
Sbjct: 361 FVKDKETLGRDDI----LGKVVFDLNEIPTRVPPNSPLAPQWYRLEDWRGEGKVVRGEIM 416
Query: 389 LAVWIGTQADEAFQEAWQSDSGGLIPE----TRAKVYLSPKLWYLRLTVIQTQDLQPGSG 444
LAVW+GTQADEAF EAW +DS + E R+KVY+SPKLWYLR+ VI+ QD+ P
Sbjct: 417 LAVWMGTQADEAFPEAWHADSASVHGEGVFNIRSKVYVSPKLWYLRVNVIEAQDMIPSDR 476
Query: 445 SEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTV 504
+ R P+++VK +G Q KT S+ + NP W EDLVFV AEPFE LV++V
Sbjct: 477 N----RLPDVFVKASVGMQTLKTSICSI-----KTTNPLWKEDLVFVVAEPFEEQLVISV 527
Query: 505 EDVTNGCS---VGHARIQMSTVERRIDDRAEPKSRWFNL----VG----DETRP---YAG 550
ED + +G + M+ E+R+D R SRWFNL G D R ++
Sbjct: 528 EDRVHTSKDEVIGKITLPMNVFEKRLDHRPV-HSRWFNLDKYGTGVLEPDARRKEHKFSS 586
Query: 551 RIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGTR 610
RIHLR CLEGGYHV+DE+ SD R A+QL K P+G+LE+GI GA L+P+K KDG R
Sbjct: 587 RIHLRICLEGGYHVMDESTMYISDTRPTARQLWKQPVGMLEIGILGANGLVPMKLKDG-R 645
Query: 611 GTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAG 670
G+T+AY VAKYG KWVRTRTILD +PRWNEQYTW+VYDPCTV+T+GVFDN ++G
Sbjct: 646 GSTNAYCVAKYGQKWVRTRTILDTLSPRWNEQYTWEVYDPCTVITLGVFDNSHLGSAQSG 705
Query: 671 KP-GKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCSSWLNLI 729
+D R+GK+R+RLSTL+ +++Y +S+ L VL P G KK G+++I+VRFT S N+I
Sbjct: 706 TADSRDARIGKVRIRLSTLEAHKIYTHSFPLLVLQPHGLKKTGDLQISVRFTTLSLANII 765
Query: 730 QAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVVQFMLDTDTHVW 789
Y P+LP+MHY+ P Q D LR+ AM IV+ RL R+EPPL +EVV++MLD D+H+W
Sbjct: 766 YNYGHPLLPKMHYLFPFTVNQVDGLRYQAMNIVSTRLGRAEPPLRKEVVEYMLDVDSHLW 825
Query: 790 SMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTI 828
SMRRSKAN+FR++ L+ + +WL+ + W + T++
Sbjct: 826 SMRRSKANFFRIMSLLSGYFLVGKWLEDVCNWRYPVTSV 864
|
|
| TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1280 (455.6 bits), Expect = 9.7e-210, Sum P(3) = 9.7e-210
Identities = 284/636 (44%), Positives = 393/636 (61%)
Query: 222 PP---LAQSDKPSNAKDKATVTETKTQ-ELRLNEHELRSLTSDRSRSAYDLVDRMPFLYV 277
PP + Q P + + ET R+ + + D++ S YDLV++M +LYV
Sbjct: 239 PPTGAVMQMQPPRQQNPEFQLIETSPPLAARMRQSYYYRSSGDKTSSTYDLVEQMHYLYV 298
Query: 278 RVLKAKRAGNVS-NGSL--YAKLVIGTHSIKTK---SQADKDWDQVFAFDKEGLNSTSLX 331
V+KA+ + +GSL Y ++ +G + TK ++ W Q+FAF KE L S L
Sbjct: 299 SVVKARDLPVMDVSGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLE 358
Query: 332 XXXXXXXXXXXXXXXXXXLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEK-LPGN--DVM 388
+G V DL EVP RVPPDSPLAPQWY LE +K + N ++M
Sbjct: 359 VTVKDKDLLTKDDF----VGRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIM 414
Query: 389 LAVWIGTQADEAFQEAWQSD----SGGLIPETRAKVYLSPKLWYLRLTVIQTQDLQPGSG 444
LAVW+GTQADE+F +AW SD S + TR+KVY SPKL+YLR+ V++ QDL P
Sbjct: 415 LAVWMGTQADESFPDAWHSDAHRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSD- 473
Query: 445 SEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTV 504
K R P+ VK Q G Q+ T RT + NP W+E+L+FV +EPFE ++V+V
Sbjct: 474 ---KGRVPDAIVKIQAGNQMRAT-RTP----QMRTMNPQWHEELMFVVSEPFEDMVIVSV 525
Query: 505 ED-VTNGCS--VGHARIQMSTVERRIDDRAEPKSRWFNLVG--------DETRP--YAGR 551
+D + G +G I + V R + P RWFNL +E R ++ +
Sbjct: 526 DDRIGPGKDEILGRVFIPVRDVPVRQEVGKMPDPRWFNLQRHSMSMEEENEKRKEKFSSK 585
Query: 552 IHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRG 611
I LR C+E GYHVLDE+ H +SD++ ++K L K IG+LE+GI A NL+P+K KDG
Sbjct: 586 ILLRVCIEAGYHVLDESTHFSSDLQPSSKHLRKPSIGILELGILSARNLMPMKGKDGRM- 644
Query: 612 TTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGK 671
TD Y VAKYG KWVRTRT+LD P+WNEQYTW+V+DPCTV+TIGVFDN + D G
Sbjct: 645 -TDPYCVAKYGNKWVRTRTLLDALAPKWNEQYTWEVHDPCTVITIGVFDNS-HVND--GG 700
Query: 672 PGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCSSWLNLIQA 731
KD R+GK+RVRLSTL+T+RVY + Y L VL PGG KK GE+++A+R+TC+ ++N++
Sbjct: 701 DFKDQRIGKVRVRLSTLETDRVYTHFYPLLVLTPGGLKKNGELQLALRYTCTGFVNMMAQ 760
Query: 732 YATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVVQFMLDTDTHVWSM 791
Y P+LP+MHY++P+ D+LRH AM+IV RL+RSEPPL +EVV++MLD D H++S+
Sbjct: 761 YGRPLLPKMHYIQPIPVRHIDLLRHQAMQIVATRLSRSEPPLRREVVEYMLDVDYHMFSL 820
Query: 792 RRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTT 827
RRSKAN+ R++ L+ + +W + I TW + TT
Sbjct: 821 RRSKANFSRIMSLLSSVTLVCKWFNDICTWRNPITT 856
|
|
| TAIR|locus:2095853 AT3G57880 "AT3G57880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1480 (526.0 bits), Expect = 2.5e-199, Sum P(2) = 2.5e-199
Identities = 311/597 (52%), Positives = 403/597 (67%)
Query: 257 LTSDRSRSAYDLVDRMPFLYVRVLKAKRA-GNVSNGSL--YAKLVIGTHSIKTK---SQA 310
L+ D+ S YDLV++M +LYVRV+KAK G GS Y ++ +G + T+ ++
Sbjct: 23 LSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDPYVEVKLGNYKGTTRHFEKKS 82
Query: 311 DKDWDQVFAFDKEGLNSTSLXXXXXXXXXXXXXXXXXXXLGTVLFDLQEVPKRVPPDSPL 370
+ +W+QVFAF K+ + ++ L +G V+FDL EVPKRVPPDSPL
Sbjct: 83 NPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDL-----IGRVVFDLNEVPKRVPPDSPL 137
Query: 371 APQWYSLES---EKLPGNDVMLAVWIGTQADEAFQEAWQSD----SG-GLIPETRAKVYL 422
APQWY LE +K+ G ++MLAVW GTQADEAF EAW SD SG + R+KVYL
Sbjct: 138 APQWYRLEDRKGDKVKG-ELMLAVWFGTQADEAFPEAWHSDAATVSGTDALANIRSKVYL 196
Query: 423 SPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANP 482
SPKLWYLR+ VI+ QDL P K R PE+YVK +G Q +T +S S + NP
Sbjct: 197 SPKLWYLRVNVIEAQDLIPTD----KQRYPEVYVKAIVGNQALRTR-----VSQSRTINP 247
Query: 483 TWNEDLVFVAAEPFEPFLVVTVED--VTNGCSV-GHARIQMSTVERRIDDRAEPKSRWFN 539
WNEDL+FVAAEPFE L+++VED N V G I + ++RR D + SRW+N
Sbjct: 248 MWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPV-NSRWYN 306
Query: 540 LV------GD--ETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLE 591
L G+ ET+ +A RIH+R CLEGGYHVLDE+ H +SD+R AKQL K IG+LE
Sbjct: 307 LEKHIMVDGEKKETK-FASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNIGVLE 365
Query: 592 VGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPC 651
+GI AT L+P+KTKDG RGTTDAY VAKYG KW+RTRTI+D F PRWNEQYTW+V+DPC
Sbjct: 366 LGILNATGLMPMKTKDG-RGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVFDPC 424
Query: 652 TVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKM 711
TV+T+GVFDN E KD R+GK+R+RLSTL+T+RVY +SY L VL P G KKM
Sbjct: 425 TVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKM 484
Query: 712 GEIEIAVRFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEP 771
GEI +AVRFTCSS LN++ Y+ P+LP+MHY+ PL +Q D LRH A +IV+ RL R+EP
Sbjct: 485 GEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTRAEP 544
Query: 772 PLGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTI 828
PL +EVV++MLD +H+WSMRRSKAN+FR++G L+ + +W + I W + TT+
Sbjct: 545 PLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTV 601
|
|
| TAIR|locus:2182305 AT5G12970 "AT5G12970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1465 (520.8 bits), Expect = 7.5e-198, Sum P(2) = 7.5e-198
Identities = 303/596 (50%), Positives = 397/596 (66%)
Query: 256 SLTSDRSRSAYDLVDRMPFLYVRVLKAKRA-GNVSNGSL--YAKLVIGTHSIKTK---SQ 309
S+T D+ S YDLV++M +LYVRV+KAK G GS Y ++ +G + TK +
Sbjct: 23 SVTGDKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGSCDPYVEVKLGNYRGMTKHFEKR 82
Query: 310 ADKDWDQVFAFDKEGLNSTSLXXXXXXXXXXXXXXXXXXXLGTVLFDLQEVPKRVPPDSP 369
++ +W QVFAF KE + ++ L +G ++FDL E+PKRVPPDSP
Sbjct: 83 SNPEWKQVFAFSKERIQASILEVVVKDKDVVLDDL-----IGRIMFDLNEIPKRVPPDSP 137
Query: 370 LAPQWYSLESE---KLPGNDVMLAVWIGTQADEAFQEAWQSDSGGLIPE----TRAKVYL 422
LAPQWY LE K+ G ++MLAVW+GTQADEAF +AW SD+ + PE R+KVYL
Sbjct: 138 LAPQWYRLEDRHGRKVKG-ELMLAVWMGTQADEAFSDAWHSDAATVGPEGVTHIRSKVYL 196
Query: 423 SPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANP 482
SPKLWY+R+ VI+ QDL P K + PE+YVK LG Q +T +S + + NP
Sbjct: 197 SPKLWYVRVNVIEAQDLIP----HDKTKFPEVYVKAMLGNQTLRTR-----ISQTKTLNP 247
Query: 483 TWNEDLVFVAAEPFEPFLVVTVED--VTNGC-SVGHARIQMSTVERRIDDRAEPKSRWFN 539
WNEDL+FV AEPFE L++ VED N ++G I + V+RR+D R SRWFN
Sbjct: 248 MWNEDLMFVVAEPFEEALILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRPL-NSRWFN 306
Query: 540 LV------GDETR-PYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEV 592
L G++ +A RIHLR LEGGYHVLDE+ H +SD+R AKQL K IGLLEV
Sbjct: 307 LEKHIMVEGEQKEIKFASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQLWKPSIGLLEV 366
Query: 593 GIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCT 652
GI A L+P+K+KDG +GTTDAY VAKYG KW+RTRTI+D F P+WNEQYTW+V+D CT
Sbjct: 367 GIISAHGLMPMKSKDG-KGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWEVFDTCT 425
Query: 653 VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMG 712
V+T G FDNG G GKD+R+GK+R+RLSTL+ +R+Y +SY L V P G KK G
Sbjct: 426 VITFGAFDNGHIP----GGSGKDLRIGKVRIRLSTLEADRIYTHSYPLLVFHPSGIKKTG 481
Query: 713 EIEIAVRFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPP 772
EI++AVRFTC S +N++ Y+ P+LP+MHY+ PL Q D LRH AM IV+ARL R+EPP
Sbjct: 482 EIQLAVRFTCLSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSARLNRAEPP 541
Query: 773 LGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTI 828
L +E+V++MLD D+H+WSMRRSKAN+FR++ L+ + +W D I W + TTI
Sbjct: 542 LRKEIVEYMLDVDSHMWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPITTI 597
|
|
| TAIR|locus:2017627 AT1G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1460 (519.0 bits), Expect = 4.7e-196, Sum P(2) = 4.7e-196
Identities = 303/598 (50%), Positives = 401/598 (67%)
Query: 257 LTSDRSRSAYDLVDRMPFLYVRVLKAKRA-GNVSNGSL--YAKLVIGTHSIKTK---SQA 310
+T D+ + YDLV++M +LYVRV+KAK G GS Y ++ +G + T+ ++
Sbjct: 23 VTGDKLTTTYDLVEQMQYLYVRVVKAKELPGKDLTGSCDPYVEVKLGNYRGTTRHFEKKS 82
Query: 311 DKDWDQVFAFDKEGLNSTSLXXXXXXXXXXXXXXXXXXXLGTVLFDLQEVPKRVPPDSPL 370
+ +W+QVFAF K+ + ++ L +G V+FDL E+PKRVPPDSPL
Sbjct: 83 NPEWNQVFAFSKDRVQASYLEATVKDKDLVKDDL-----IGRVVFDLNEIPKRVPPDSPL 137
Query: 371 APQWYSLES---EKLPGNDVMLAVWIGTQADEAFQEAWQSD----SG-GLIPETRAKVYL 422
APQWY LE +K+ G ++MLAVW GTQADEAF EAW SD SG + R+KVYL
Sbjct: 138 APQWYRLEDGKGQKVKG-ELMLAVWFGTQADEAFPEAWHSDAATVSGTDALANIRSKVYL 196
Query: 423 SPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANP 482
SPKLWYLR+ VI+ QDL P K R PE++VK +G Q +T +S S S NP
Sbjct: 197 SPKLWYLRVNVIEAQDLIPSD----KGRYPEVFVKVIMGNQALRTR-----VSQSRSINP 247
Query: 483 TWNEDLVFVAAEPFEPFLVVTVED--VTNGCSV-GHARIQMSTVERRIDDRAEPKSRWFN 539
WNEDL+FV AEPFE L+++VED N V G + + +++R D R SRWFN
Sbjct: 248 MWNEDLMFVVAEPFEEPLILSVEDRVAPNKDEVLGRCAVPLQYLDKRFDYRPV-NSRWFN 306
Query: 540 LV------GDETRP--YAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLE 591
L G E + +A +IH+R CLEGGYHVLDE+ H +SD+R AKQL K IG+LE
Sbjct: 307 LEKHVIMEGGEKKEIKFASKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNIGVLE 366
Query: 592 VGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPC 651
+G+ AT L+P+K K+G RGTTDAY VAKYG KW+RTRTI+D F PRWNEQYTW+V+DPC
Sbjct: 367 LGVLNATGLMPMKAKEGGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVFDPC 426
Query: 652 TVLTIGVFDNGR-YKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKK 710
TV+T+GVFDN + D+ GKD R+GK+R+RLSTL+ +RVY +SY L VL P G KK
Sbjct: 427 TVVTVGVFDNCHLHGGDKNNGGGKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHPSGVKK 486
Query: 711 MGEIEIAVRFTCSSWLNLIQAYATPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSE 770
MGEI +AVRFTCSS LN++ Y+ P+LP+MHY+ PL +Q D LRH A +IV+ RL R+E
Sbjct: 487 MGEIHLAVRFTCSSLLNMMYMYSMPLLPKMHYLHPLTVSQLDNLRHQATQIVSTRLTRAE 546
Query: 771 PPLGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTI 828
PPL +EVV++MLD +H+WSMRRSKAN+FR++G L+ + +W + I W + TT+
Sbjct: 547 PPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFEQICVWKNPITTV 604
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 983 | |||
| pfam08372 | 156 | pfam08372, PRT_C, Plant phosphoribosyltransferase | 8e-84 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 1e-56 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 3e-56 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 7e-56 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 7e-44 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 6e-19 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 6e-17 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 1e-15 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-15 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 6e-13 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 1e-12 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 1e-12 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-11 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-11 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 2e-11 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 2e-11 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 5e-11 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 6e-11 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 4e-10 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 8e-10 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 5e-09 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 1e-08 | |
| PRK10819 | 246 | PRK10819, PRK10819, transport protein TonB; Provis | 1e-08 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 3e-08 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 5e-08 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 8e-08 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 2e-07 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 4e-07 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 6e-07 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 8e-07 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 8e-07 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 8e-07 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 9e-07 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 1e-06 | |
| COG0810 | 244 | COG0810, TonB, Periplasmic protein TonB, links inn | 2e-06 | |
| PRK12372 | 413 | PRK12372, PRK12372, ribonuclease III; Reviewed | 4e-06 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 5e-06 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 5e-06 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 5e-06 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 7e-06 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 9e-06 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 1e-05 | |
| pfam02063 | 296 | pfam02063, MARCKS, MARCKS family | 1e-05 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 1e-05 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 2e-05 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 2e-05 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 3e-05 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 3e-05 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 3e-05 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 3e-05 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 3e-05 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 4e-05 | |
| COG0810 | 244 | COG0810, TonB, Periplasmic protein TonB, links inn | 5e-05 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 5e-05 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 6e-05 | |
| pfam09507 | 427 | pfam09507, CDC27, DNA polymerase subunit Cdc27 | 6e-05 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 7e-05 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 7e-05 | |
| PRK12270 | 1228 | PRK12270, kgd, alpha-ketoglutarate decarboxylase; | 7e-05 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 8e-05 | |
| PRK00708 | 209 | PRK00708, PRK00708, sec-independent translocase; P | 9e-05 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 9e-05 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 9e-05 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 1e-04 | |
| COG0810 | 244 | COG0810, TonB, Periplasmic protein TonB, links inn | 1e-04 | |
| PTZ00144 | 418 | PTZ00144, PTZ00144, dihydrolipoamide succinyltrans | 1e-04 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 1e-04 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 1e-04 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 1e-04 | |
| PRK14718 | 467 | PRK14718, PRK14718, ribonuclease III; Provisional | 2e-04 | |
| PRK06347 | 592 | PRK06347, PRK06347, autolysin; Reviewed | 2e-04 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 2e-04 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 3e-04 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 3e-04 | |
| PRK12372 | 413 | PRK12372, PRK12372, ribonuclease III; Reviewed | 3e-04 | |
| PRK05996 | 423 | PRK05996, motB, flagellar motor protein MotB; Vali | 3e-04 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 4e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 4e-04 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 4e-04 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 5e-04 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 6e-04 | |
| pfam05466 | 233 | pfam05466, BASP1, Brain acid soluble protein 1 (BA | 6e-04 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 7e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 8e-04 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 8e-04 | |
| PRK14951 | 618 | PRK14951, PRK14951, DNA polymerase III subunits ga | 8e-04 | |
| pfam05887 | 145 | pfam05887, Trypan_PARP, Procyclic acidic repetitiv | 9e-04 | |
| PRK07994 | 647 | PRK07994, PRK07994, DNA polymerase III subunits ga | 9e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 9e-04 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 0.001 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 0.001 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 0.001 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 0.001 | |
| PRK14951 | 618 | PRK14951, PRK14951, DNA polymerase III subunits ga | 0.001 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 0.001 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 0.001 | |
| PRK06402 | 106 | PRK06402, rpl12p, 50S ribosomal protein L12P; Revi | 0.001 | |
| PRK11633 | 226 | PRK11633, PRK11633, cell division protein DedD; Pr | 0.001 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 0.002 | |
| pfam02063 | 296 | pfam02063, MARCKS, MARCKS family | 0.002 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 0.002 | |
| cd08691 | 137 | cd08691, C2_NEDL1-like, C2 domain present in NEDL1 | 0.002 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 0.002 | |
| PRK11855 | 547 | PRK11855, PRK11855, dihydrolipoamide acetyltransfe | 0.002 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 0.002 | |
| smart00527 | 88 | smart00527, HMG17, domain in high mobilty group pr | 0.002 | |
| PRK11854 | 633 | PRK11854, aceF, pyruvate dehydrogenase dihydrolipo | 0.003 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 0.003 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 0.003 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 0.004 | |
| PRK12372 | 413 | PRK12372, PRK12372, ribonuclease III; Reviewed | 0.004 | |
| PTZ00144 | 418 | PTZ00144, PTZ00144, dihydrolipoamide succinyltrans | 0.004 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 0.004 | |
| pfam05466 | 233 | pfam05466, BASP1, Brain acid soluble protein 1 (BA | 0.004 |
| >gnl|CDD|192017 pfam08372, PRT_C, Plant phosphoribosyltransferase C-terminal | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 8e-84
Identities = 97/151 (64%), Positives = 120/151 (79%)
Query: 833 LLVAVVLSLRFRYRQRVPQNMDPRLSYVDVVGPDELDEEFDGFPTSRPSEVVRIRYDRLR 892
L + V+ +R+R R P +MD RLS+ D PDELDEEFD FPTSRP +VVR+RYDRLR
Sbjct: 6 LYLFVIGLWNYRFRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRPPDVVRMRYDRLR 65
Query: 893 ALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCLVASLVFYAVPFKLFVLGSGF 952
++AGR QT++GD+A QGERL+AL +WRDPRAT IFV+ CLVA++V Y VPFK+ L +GF
Sbjct: 66 SVAGRVQTVVGDIATQGERLQALLSWRDPRATAIFVLFCLVAAVVLYVVPFKVVALLAGF 125
Query: 953 YYLRHPRFRGDMPSVPVNFVRRLPSLSDQIL 983
YYLRHPRFR MPSVP+NF RRLPS +D +L
Sbjct: 126 YYLRHPRFRSRMPSVPLNFFRRLPSRTDSML 156
|
This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). Length = 156 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 1e-56
Identities = 68/127 (53%), Positives = 99/127 (77%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
KL+VEV +A++LMPKDGQG++SAYV +DFDGQ++RT+TK +DLNP W+E+L F V D
Sbjct: 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSR 60
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIG 127
+ +LE+ +YND+++G+R +FLG+V+I+G++F YPLEKR +FS+++GEIG
Sbjct: 61 LSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIG 120
Query: 128 LKVYYID 134
LKVY D
Sbjct: 121 LKVYITD 127
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 3e-56
Identities = 76/160 (47%), Positives = 101/160 (63%), Gaps = 20/160 (12%)
Query: 428 YLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNED 487
YLR+TVI+ QDL P K R PE++VK QLG Q+ +T R S + + NP+WNE+
Sbjct: 1 YLRVTVIEAQDLVPS----DKNRVPEVFVKAQLGNQVLRT-RPSQ----TRNGNPSWNEE 51
Query: 488 LVFVAAEPFEPFLVVTVEDVTNGC---SVGHARIQMSTVERRIDDRAEPKSRWFNLVGDE 544
L+FVAAEPFE L+++VED +G A I ++ +ERR+DDR SRWF+L
Sbjct: 52 LMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDR-PVPSRWFSLERPG 110
Query: 545 T-------RPYAGRIHLRACLEGGYHVLDEAAHVTSDVRA 577
R +A RIHLR CL+GGYHVLDE+ H +SD+R
Sbjct: 111 GAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 7e-56
Identities = 84/129 (65%), Positives = 99/129 (76%), Gaps = 3/129 (2%)
Query: 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVY 648
+LEVGI GA L ++ KDG RG+TDAY VAKYGPKWVRTRT+ D NPRWNEQYTW VY
Sbjct: 1 ILEVGILGAQGLDVLRAKDG-RGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVY 59
Query: 649 DPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGA 708
DPCTVLT+GVFDN + EA +P DV +GK+R+RLSTL+ +RVY +SY L L P G
Sbjct: 60 DPCTVLTVGVFDNSQSHWKEAVQP--DVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGV 117
Query: 709 KKMGEIEIA 717
KKMGE+E A
Sbjct: 118 KKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 7e-44
Identities = 60/127 (47%), Positives = 83/127 (65%), Gaps = 11/127 (8%)
Query: 274 FLYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQ---ADKDWDQVFAFDKEGLNSTSL 330
+LYVRV+KA+ SN ++ +G + TK+ ++ +W+QVFAF K+ L ++L
Sbjct: 1 YLYVRVVKARGLPANSN-DPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTL 59
Query: 331 EVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEK--LPGNDVM 388
EVSVW ++K +++ LG V FDL EVP RVPPDSPLAPQWY LE +K G ++M
Sbjct: 60 EVSVWDKDKAKDD-----FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELM 114
Query: 389 LAVWIGT 395
LAVW GT
Sbjct: 115 LAVWFGT 121
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 6e-19
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAES 67
L V V A+NL KD G + YV V G Q+ +TK LNP W+E EF V D
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLD--- 57
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113
++ L + ++ DK + FLG+V+I S G E ++ PL
Sbjct: 58 PESDTLTVEVW-DKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 6e-17
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQR---RRTKTKFRDLNPQWDERLEFLVHDA 65
L V V +AKNL PKD G + YV V GQ+ ++TK LNP W+E F V
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 66 ESMPTEILEINLYNDKKTGKRSTFLGKVK 94
E L I +Y D + F+G+V
Sbjct: 61 E---LAELRIEVY-DYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 1e-15
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWV---RTRTILDRFNPRWNEQYTWD 646
L V + A NL P G +D YV G + +T+ + + NP WNE +T++
Sbjct: 1 LRVTVISAKNLPPKDLN----GKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFE 56
Query: 647 VYDP-CTVLTIGVFDNGRYKRDE 668
V P L I V+D R+ +D+
Sbjct: 57 VTLPELAELRIEVYDYDRFGKDD 79
|
Length = 85 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-15
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ---RRRTKTKFRDLNPQWDERLEFLVHD 64
L V++ +A+NL PKD G + YV V DG +++TK LNP W+E EF V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 65 AESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
E LEI +Y DK R F+G+V I
Sbjct: 61 PE---LAELEIEVY-DKDRFGRDDFIGQVTI 87
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 6e-13
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWV-RTRTILDRFNPRWNEQYTWDVY 648
L V + A NL G +D YV G K +T+ + + NP WNE + + V
Sbjct: 1 LRVTVIEARNLPAKDLN----GKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVL 56
Query: 649 DP-CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD 689
DP LT+ V+D R+ +D+ +G++ + LS L
Sbjct: 57 DPESDTLTVEVWDKDRFSKDDF--------LGEVEIPLSELL 90
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-12
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 17/133 (12%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
K+ + V A+ L+ KD GT+ YV V ++RTKT ++LNP W+E+ F H++
Sbjct: 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-- 59
Query: 68 MPTEILEINLY---NDKKTGKRST-------FLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
++ +++ ++ +D K+ + FLG+ I T + E V+Y LEKR+
Sbjct: 60 --SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS---GEMDVWYNLEKRT 114
Query: 118 VFSQIKGEIGLKV 130
S + G I L +
Sbjct: 115 DKSAVSGAIRLHI 127
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-12
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERL 58
S +KLIV V +NL P D YV + RR+T K +LNP +DE
Sbjct: 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETF 72
Query: 59 EFLVHDAESMPTEILEINLYNDKKTGKR-STFLGKVKI 95
EF V E L++ + N K R LG+V I
Sbjct: 73 EFPVSLEELKRRT-LDVAVKNSKSFLSREKKLLGQVLI 109
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-11
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTW 645
L V I A NL P G +D YV + +T+ + + NP WNE + +
Sbjct: 1 TLTVKIISARNLPPKDKG----GKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEF 56
Query: 646 DVYDPCT-VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN 691
+V P L I V+D R+ RD+ +G++ + LS L
Sbjct: 57 EVPPPELAELEIEVYDKDRFGRDD--------FIGQVTIPLSDLLLG 95
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-11
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 16 AKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEI 75
KNL P D G + YV ++ ++K + LNPQW E+ + + D +S ILEI
Sbjct: 9 GKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQ---ILEI 65
Query: 76 NLYNDKKTGKRSTFLGKVKIAGSTFAK 102
++ DK TGK+ F+G+ +I S +
Sbjct: 66 EVW-DKDTGKKDEFIGRCEIDLSALPR 91
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-11
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 11 VEVCNAKNLMPKD------GQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHD 64
+ V A++L+ KD +G + YVIV Q ++K +LNP+W+E E +V +
Sbjct: 5 IHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDE 64
Query: 65 AESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114
P + LEI L+ D+ K FLG++ I + K G + PLE
Sbjct: 65 V---PGQELEIELF-DEDPDK-DDFLGRLSIDLGSVEKKG-FIDEWLPLE 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-11
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 9 LIVEVCNAKNLMPKD--GQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAE 66
L V V AK+L KD G+G + Y I+ QR +T+T LNP+W+ EF +
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPI---F 59
Query: 67 SMPTEILEINLYNDKKTGKRSTFLGKVKIA-GSTFAKVGSESSV-YYPLE-KRSVFSQIK 123
S ++L++ L+ DK +LG+ IA FA + S + L+ R + +
Sbjct: 60 SAQNQLLKLILW-DKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVV 118
Query: 124 -GEIGLK 129
GEI L+
Sbjct: 119 SGEIHLQ 125
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 5e-11
Identities = 41/143 (28%), Positives = 54/143 (37%), Gaps = 30/143 (20%)
Query: 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY--GPKWVRTRTILDRFNPRWNEQYT 644
IG+L V I+ A L GT D YV + RT+ D NP WNE
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGGT---VDPYVTFSISNRRELARTKVKKDTSNPVWNET-- 55
Query: 645 WDVY-------DPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNS 697
Y +P L + V+D + KD +G LS+L N N
Sbjct: 56 --KYILVNSLTEP---LNLTVYDFNDKR--------KDKLIGTAEFDLSSLLQNPEQEN- 101
Query: 698 YSLTVLLPGGAKKMGEIEIAVRF 720
LT L K +GE+ +RF
Sbjct: 102 --LTKNLLRNGKPVGELNYDLRF 122
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 6e-11
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWD 646
+GLL+V + TNL +D T ++D YVV G + V+TR I NP WNE+ T
Sbjct: 1 LGLLKVRVVRGTNLA---VRDFT--SSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLS 55
Query: 647 VYDPCTVLTIGVFDNGRYKRDE 668
V +P L + VFD + +D+
Sbjct: 56 VPNPMAPLKLEVFDKDTFSKDD 77
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-10
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESM 68
L V+V A L D G + + +++ R +T T ++ LNP+W++ F + D
Sbjct: 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHD- 61
Query: 69 PTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGL 128
+LE+ +Y++ K K+ FLGKV I + + +Y L+ + + ++ KG I L
Sbjct: 62 ---VLEVTVYDEDK-DKKPEFLGKVAIP---LLSIKNGERKWYALKDKKLRTRAKGSILL 114
Query: 129 KVYYI 133
++ I
Sbjct: 115 EMDVI 119
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 8e-10
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 429 LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDL 488
LR+TVI ++L P + + YVK LG Q T +T V ++ NP WNE
Sbjct: 1 LRVTVISAKNLPPKDLN----GKSDPYVKVSLGGQKKDTKKTKV---VKNTLNPVWNETF 53
Query: 489 VFVAAEPFEPFLVVTVED 506
F P L + V D
Sbjct: 54 TFEVTLPELAELRIEVYD 71
|
Length = 85 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-09
Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 10/102 (9%)
Query: 428 YLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNED 487
L + +I ++L P + YVK L + +T V ++ NP WNE
Sbjct: 1 TLTVKIISARNLPPKDKG----GKSDPYVKVSLDGDPKEKKKTKV---VKNTLNPVWNET 53
Query: 488 LVFVAAEPFEPFLVVTVEDVTNGCS---VGHARIQMSTVERR 526
F P L + V D +G I +S +
Sbjct: 54 FEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG 95
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWV-RTRTILDRFNPRWNEQYTWDV 647
L++ ++ NL + + GT +D YV KYG K V +++TI NP W+E++T +
Sbjct: 1 QLDIHLKEGRNL-AARDRGGT---SDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPI 56
Query: 648 YDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGG 707
D L I VFD D + D +G V LSTL+ N+ L + P
Sbjct: 57 EDVTQPLYIKVFD-----YD---RGLTDDFMGSAFVDLSTLELNKP--TEVKLKLEDPNS 106
Query: 708 AKKMGEIEIAVRFT 721
+ +G I + V T
Sbjct: 107 DEDLGYISLVVTLT 120
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 134 DEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEG------KKEEEK 187
E P A P V EP +PE + + P E V K E KP KK EE+
Sbjct: 58 LEPPQAVQPPPEPVVEPEPEPE-PIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQ 116
Query: 188 PKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQN-PPLAQSDKP 230
PK E P E P E A ++T + P + S P
Sbjct: 117 PKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSVSSGP 160
|
Length = 246 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-08
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESM 68
L V + +AKNL S YV + +++K K R NP W+E FLV + E
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE-- 59
Query: 69 PTEILEINLYNDKKTGKRSTFLGKVKI 95
+ LEI + D KTGK LG + +
Sbjct: 60 -NQELEIEVK-DDKTGKS---LGSLTL 81
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-08
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVD--FDGQR---RRTKTKFRDLNPQWDERLEF 60
+L V V A+NL P DG+G + YV V G++ ++T K LNP ++E F
Sbjct: 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSF 72
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKV 93
V AE + L I + + G R+ +G+V
Sbjct: 73 DV-PAEQLEEVSLVITVVDKDSVG-RNEVIGQV 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 8e-08
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 429 LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDL 488
LR+TVI+ ++L + + YVK LG + + +T V ++ NP WNE
Sbjct: 1 LRVTVIEARNLPAKDLN----GKSDPYVKVSLGGK--QKFKTKV---VKNTLNPVWNETF 51
Query: 489 VFVAAEPFEPFLVVTVED---VTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNL 540
F +P L V V D + +G I +S + D + W L
Sbjct: 52 EFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSE----LLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
+L+V + ++L P + G + Y V Q +TK LNP+W+ ++F V D E
Sbjct: 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQ 75
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQI-KGEI 126
++L I ++ D+ FLG+ +I + K ES P+ KR + ++ GE+
Sbjct: 76 ---DVLCITVF-DRDFFSPDDFLGRTEIRVADILKETKESK--GPITKRLLLHEVPTGEV 129
Query: 127 GLK 129
+K
Sbjct: 130 VVK 132
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 2 AESCNRKLIVEVCNAKNLMPKDGQGTASAYVIV-----DFDGQRRRTKTKFRDLNPQWDE 56
+ KL VEV AKNL+P D G + YV + + +++TKT + LNP W+E
Sbjct: 8 ISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNE 67
Query: 57 RLEFLVHDA 65
F + A
Sbjct: 68 TFTFDLKPA 76
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 15/103 (14%)
Query: 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYD 649
L V + A +L+P KDG +G++ AYV + + RTRT NP WNE+ ++V D
Sbjct: 2 LVVEVVDAQDLMP---KDG-QGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSD 57
Query: 650 PCT----VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL 688
P VL + V+++ +R + +G++R+ ++
Sbjct: 58 PSRLSNLVLEVYVYND---RRSGRRRS----FLGRVRISGTSF 93
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-07
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDV 647
G L+V + A+ L D G +D + V + ++T TI NP WN+ +T+ +
Sbjct: 1 GFLQVKVIRASGLA---AADIG-GKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI 56
Query: 648 YDPCTVLTIGVFDNGRYKRDE 668
D VL + V+D + K+ E
Sbjct: 57 KDIHDVLEVTVYDEDKDKKPE 77
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-07
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEF 60
+LIV V A++L P+D + YV V + +RRTKT + LNP+W++ E+
Sbjct: 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEY 74
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
E++ LE+ +++ + G+ + FLG+V I
Sbjct: 75 SNVRRETLKERTLEVTVWDYDRDGE-NDFLGEVVI 108
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-07
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDF-------DGQRRRTKTKFRDLNPQWDERLE 59
+ L VE+ NA+NL+P D G++ +V V+ D +T+ K + L P +DE E
Sbjct: 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFE 75
Query: 60 FLV 62
F V
Sbjct: 76 FNV 78
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-07
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEF 60
N L + AK L D G + YV ++ + RTKT + NP+++E L +
Sbjct: 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTY 73
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIA 96
E + + L + + ++ + G + FLG+ +I
Sbjct: 74 YGITEEDIQRKTLRLLVLDEDRFG--NDFLGETRIP 107
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVD-FDGQRRR------TKTKFRDLNPQWDERLEFL 61
L V+V +L KD G + YV + +D TKT + LNP+W+E F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 62 VHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI--AGSTFAKVGSESSV---YYPLEKR 116
V+ E L ++++ + R FLG+V++ G+E Y L R
Sbjct: 62 VNPREHR----LLFEVFDENRLT-RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR 116
Query: 117 SVFSQIKGEIGLKVYYI 133
S S++KG + L + Y+
Sbjct: 117 SSKSRVKGHLRLYMAYL 133
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 5/126 (3%)
Query: 107 SSVYYPLEKRSVFSQIKGEIGLKVYYIDEDPPAPAPE---AAAVAEPATKPEAAVADKPP 163
+++ + + F I+ + AP E E KP P
Sbjct: 19 AALLFVFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPE 78
Query: 164 EKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPP 223
++K + + K KPK + P+ P+P P + A P P
Sbjct: 79 PTPPKPKEKPKPEKKPKKPKP--KPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPA 136
Query: 224 LAQSDK 229
S
Sbjct: 137 RPPSAA 142
|
Length = 244 |
| >gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 138 PAPAPEAAAVA----------EPATKPEAA--VADKPPEKAVGEEKKEEKPATVEGKKEE 185
PA AP AA A E A KP AA ADKP ++ EK EKPA + +
Sbjct: 294 PAVAPMAAIRAAHVETAADKGERAAKPAAADKAADKPADRPDAAEKAAEKPAEAAPRAAD 353
Query: 186 EKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNA 233
+ + P ++ KP + AAA A + P ++
Sbjct: 354 KPAGQAADPASSSADKPGASADAAARTPARARDAAAPDADTPPGGASL 401
|
Length = 413 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-06
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
+L V A++L PKD GT+ +V V ++GQ T + P+W+E EF + +
Sbjct: 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-- 58
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESS 108
L + +++ K + FLGKV + T + E
Sbjct: 59 -ADSPLSVEVWDWDLVSK-NDFLGKVVFSIQTLQQAKQEEG 97
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-06
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRD-LNPQWDERLEFLVHDAES 67
L+V V A+NL K Y ++ G ++TKT FR +P+WDE L F + + +
Sbjct: 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITE-DK 61
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIG 127
P IL++ +++D K ++ +G ++ S A E +Y L + ++ GE+
Sbjct: 62 KP--ILKVAVFDDDK--RKPDLIGDTEVDLSP-ALKEGEFDDWYELTLKGRYA---GEVY 113
Query: 128 LKVYY 132
L++ +
Sbjct: 114 LELTF 118
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 20/137 (14%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIV----DFDGQRRRTKTKFRDLNPQWDERLEFLVHD 64
L V V ++L K GT + V +RTK K + NP++DE F +
Sbjct: 1 LSVRVLECRDLALKSN-GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 65 AESMPT----------EILEIN--LYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYY- 111
S E E+ L++ FLG+V+I + GS + Y+
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSG-DDFLGEVRIPLQGLQQAGSHQAWYFL 118
Query: 112 -PLEKRSVFSQIKGEIG 127
P E S G +G
Sbjct: 119 QPREAPGTRSSNDGSLG 135
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-06
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 610 RGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYD-PCTVLTIGVFDNGRYKRDE 668
+G +D YV+ + G + +++ I + NP+WNE Y V + P L I +FD K D
Sbjct: 25 KGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDF 84
Query: 669 AG 670
G
Sbjct: 85 LG 86
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQ---RRRTKTKFRDLNPQWDERLEFL 61
R LIV + NL D G + +V + D + +T+ K + LNP+++E +
Sbjct: 13 RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72
Query: 62 VHDAESMPTEILEINLYNDKKTGKRSTFLGKV 93
+ ++ + + LEI ++ DK GK + ++G +
Sbjct: 73 IKHSD-LAKKTLEITVW-DKDIGKSNDYIGGL 102
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAE 66
+L + + +NL +D GT+ YV + G ++KT +++LNP WDE+ + D
Sbjct: 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED-- 58
Query: 67 SMPTEILEINLYNDKKTGKRSTFLGKVKI 95
T+ L I ++ D G F+G +
Sbjct: 59 --VTQPLYIKVF-DYDRGLTDDFMGSAFV 84
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|216860 pfam02063, MARCKS, MARCKS family | Back alignment and domain information |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 50/162 (30%), Positives = 64/162 (39%), Gaps = 5/162 (3%)
Query: 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQ-IKGEIGLKV--YYIDEDP 137
KK KR +F K++G +F K E+ E + + K E E+
Sbjct: 134 KKKKKRFSFKKSFKLSGFSFKKNKKEAGEGAEAEGAAAEKEGAKEEAAAAAPEAGSGEEA 193
Query: 138 PAPAPEAAAVA--EPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPE 195
AP EA A A + AA A+ +A EE EKP E K EE+ EEKP E
Sbjct: 194 AAPGEEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAE 253
Query: 196 ENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKA 237
E A+ PAA AA E PP + S A
Sbjct: 254 EAGASSAAQEAPAAEQEAAPAEEPAAPPQEACSESSPEAPPA 295
|
Length = 296 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQY 643
L V + AT L +TD YV +G + RT I + NPRWN +
Sbjct: 30 LTVTVLRATGL-----WGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATF 78
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 11 VEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPT 70
V V A+ L+ K GT AYVI+ ++ T K + +P W E F + S
Sbjct: 3 VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62
Query: 71 E--ILEINLYNDKKTGKRSTFLGKVKIA-GSTFAKVGSESSVYYPLE-KRSVFSQIKGEI 126
L++ + + G FLG+V I G + ++ LE K + +GEI
Sbjct: 63 NRATLQLTVMHRNLLGL-DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEI 121
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 15 NAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEIL 73
A +L +G G YV V +G + RT T LNP WDE L V P + +
Sbjct: 9 KANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTS----PNQKI 64
Query: 74 EINLYNDKKTGK-RSTFLGKVKIAGSTFAK 102
+ + + +K GK RS LG V+I S K
Sbjct: 65 TLEVMDYEKVGKDRS--LGSVEINVSDLIK 92
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 11 VEVCNAKNLMPKDGQGTASAYV-IVDFDGQRR--RTKTKFRDLNPQWDERLEFLVHDAES 67
+ + A+NL G + YV +VD +G+RR +T+T + LNP+WDE E V E
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64
Query: 68 MPTEILEINLYNDKKTGK-----RSTFL 90
+ + +++ GK R++
Sbjct: 65 L---WISATVWDRSFVGKHDLCGRASLK 89
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ-RRRTKTKFRDLNPQWDERLEFLVHDAE 66
+L + V +AK L YV V DGQ ++T+ + NP+W+E LV
Sbjct: 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--- 58
Query: 67 SMPTEILEINLYNDKKTGKRSTFLGKVKI 95
P LE ++ T K LG+ +
Sbjct: 59 --PQSTLEFKVW-SHHTLKADVLLGEASL 84
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQR-RRTKTKFRDLNPQWDERLEFLVHDAES 67
L + + KNL KD G++ Y IV D + RT T ++ LNP W E E+ VH
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGE--EYTVH---- 55
Query: 68 MPTEILEINLY-NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEI 126
+P ++ Y D+ T R +GKV + + + L + +++GEI
Sbjct: 56 LPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEI 115
Query: 127 GLKV 130
L++
Sbjct: 116 HLEL 119
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVA---KYGPKWVRTRTILDRFNPRWNEQYT 644
G+L V I AT+L D G++D YV A K+G TR I NP W E T
Sbjct: 1 GVLVVTIHRATDL---PKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEE--T 55
Query: 645 W 645
W
Sbjct: 56 W 56
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 3e-05
Identities = 23/135 (17%), Positives = 36/135 (26%)
Query: 139 APAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENT 198
A AP+AAA A A PP A + + A V K + + E +
Sbjct: 409 ALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDA 468
Query: 199 NPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKTQELRLNEHELRSLT 258
P +A A A P P + + R + +
Sbjct: 469 QPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528
Query: 259 SDRSRSAYDLVDRMP 273
+ +R
Sbjct: 529 APEARPPTPAAAAPA 543
|
Length = 830 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 4e-05
Identities = 28/131 (21%), Positives = 41/131 (31%), Gaps = 1/131 (0%)
Query: 138 PAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPE-E 196
PAPAP AA A +P AA A + A ++ P EE PPE
Sbjct: 448 PAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFA 507
Query: 197 NTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKTQELRLNEHELRS 256
+ P +A PA + P P + + A A +
Sbjct: 508 SPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPR 567
Query: 257 LTSDRSRSAYD 267
++ +D
Sbjct: 568 ASASGLPDMFD 578
|
Length = 700 |
| >gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 28/131 (21%), Positives = 39/131 (29%), Gaps = 5/131 (3%)
Query: 120 SQIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAA--VADKPPEKAVGEEKKEEKPA 177
S L V+ ED AV A K A +P + E+ K
Sbjct: 14 SGALVAALLFVFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEP 73
Query: 178 TVEGKKEEEKPKEEKPPEEN---TNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAK 234
+ KPKE+ PE+ PKP P V P + P + P+
Sbjct: 74 ETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPN 133
Query: 235 DKATVTETKTQ 245
A +
Sbjct: 134 QPARPPSAASA 144
|
Length = 244 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-05
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQR-RRTKTKFRDLNPQWDERLEFLVHDAES 67
L V+V +A+NL D G + +V +G++ +TKT + LNP W+E E V S
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVP---S 57
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKI 95
+L++ +Y+ + GK LG I
Sbjct: 58 RVRAVLKVEVYDWDRGGK-DDLLGSAYI 84
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 6e-05
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 9 LIVEVCNAKNLMPKD-GQGTASAYVIVDFDGQRR--RTKTKFRDLNPQWDERLEFLVHDA 65
L V + +A+ L D GT YV +R RTK K NP W+E LV
Sbjct: 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILV--- 60
Query: 66 ESMPTEILEINLYNDKKTGKRS-TFLGKVKI 95
+ TE L + +Y+ KR +G +
Sbjct: 61 -NSLTEPLNLTVYD--FNDKRKDKLIGTAEF 88
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 6e-05
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 12/113 (10%)
Query: 137 PPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEE------------KKEEKPATVEGKKE 184
P AA+ A T + KPP+ + E KE EGK
Sbjct: 142 GLPPVAPAASPALKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTS 201
Query: 185 EEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKA 237
+ ++ P + +N + ++ +S++ S +D
Sbjct: 202 VKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVI 254
|
This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-05
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 17/111 (15%)
Query: 275 LYVRVLKAK---RAGNVSNGSLYAKLVIGTHSIKTKSQADKD-----WDQVFAFDKEGLN 326
L V V++A+ Y K+ +G K K++ K+ W++ F F
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLG-GKQKFKTKVVKNTLNPVWNETFEFPVLDPE 59
Query: 327 STSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSL 377
S +L V VW +++ ++ LG V L E+ W L
Sbjct: 60 SDTLTVEVWDKDRFSKDD----FLGEVEIPLSELLDSGKEG----ELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-05
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 588 GLLEVGIRGATNLLPVKTKD-GTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWD 646
G+L V + A +L KD +G +D Y + G + +T+TI + NP+WN +
Sbjct: 1 GVLRVHVVEAKDLAA---KDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFP 57
Query: 647 VYDP-CTVLTIGVFDNGRYKRD----EAGKPGKDVR-VGKIRVRLS--TLDTNRVYLNSY 698
++ +L + ++D R+ E ++V GK TL + R S
Sbjct: 58 IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117
Query: 699 S 699
Sbjct: 118 V 118
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 7e-05
Identities = 30/93 (32%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 132 YIDEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEE 191
Y AP AAA A A+ P AA A K P PA PK
Sbjct: 36 YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA--------PPKPA 87
Query: 192 KPPEENTNPKPAEAPPAAAAVAATPVEVQNPPL 224
P A AAAA AA VE + PL
Sbjct: 88 AAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPL 120
|
Length = 1228 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 10 IVEVCN--AKNLMP---KDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHD 64
I+EV A+ L KDG+G+ AY + + + RT+T NP+W+E+ + V+D
Sbjct: 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD 60
Query: 65 AESMPTEILEINLYN-----DKKTGKRSTFLGKVKIAGST 99
P +L + +++ K+ + +GKV+I ST
Sbjct: 61 ----PCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLST 96
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 24/106 (22%), Positives = 30/106 (28%), Gaps = 12/106 (11%)
Query: 137 PPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKP-PE 195
P + P T P V P A + P K KP+ + P P
Sbjct: 111 PAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAP------KAPAKPRAKSPRPA 164
Query: 196 ENTNPKPAEAPPAAAAVAAT----PVEVQNPPLAQSDKPSNAKDKA 237
PKP E A A P + A+ K KA
Sbjct: 165 AKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKK-KKTKA 209
|
Length = 209 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 9e-05
Identities = 26/103 (25%), Positives = 30/103 (29%), Gaps = 2/103 (1%)
Query: 137 PPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEE 196
P A AP AAA PA P+ A A P + P
Sbjct: 412 PAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471
Query: 197 NTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATV 239
A PA A A P A P+ A D AT+
Sbjct: 472 AAPEPTAAPAPAPPAAPAPAAAPAAP--AAPAAPAGADDAATL 512
|
Length = 824 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 9e-05
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV-----DFDGQRRRTKTKFRDLNPQWDERLEF 60
++ V + A+NL D GT+ YV V D ++++T K R LNP ++E F
Sbjct: 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIF 73
Query: 61 LVHDAESMPTEIL-----EINLYNDKKTGKRSTFLGKVKIAGST 99
+ P E L I + DK R+ +GK+ + +
Sbjct: 74 NI------PLERLRETTLIITVM-DKDRLSRNDLIGKIYLGWKS 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQ 642
L V +R A NL+P+ G +D YV K P +T+TI NP WNE
Sbjct: 13 NKLTVEVREAKNLIPM----DPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNET 68
Query: 643 YTWDVY--DPCTVLTIGVFDNGRYKRDE 668
+T+D+ D L+I V+D R R++
Sbjct: 69 FTFDLKPADKDRRLSIEVWDWDRTTRND 96
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 18/88 (20%), Positives = 29/88 (32%)
Query: 133 IDEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEK 192
++ P PE P E +K P+K + K + KP + + K K
Sbjct: 64 EEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSK 123
Query: 193 PPEENTNPKPAEAPPAAAAVAATPVEVQ 220
+ A P +AA A+
Sbjct: 124 TAAKAPAAPNQPARPPSAASASGAATGP 151
|
Length = 244 |
| >gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 31/100 (31%), Positives = 35/100 (35%), Gaps = 18/100 (18%)
Query: 125 EIGLKVYYIDED--PPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGK 182
E+G + ID PPA AP AAA A+ P E KP
Sbjct: 110 EVGAPLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTP---EPPAASKPT----- 161
Query: 183 KEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNP 222
P KPPE P PA PP A P E + P
Sbjct: 162 ----PPAAAKPPE----PAPAAKPPPTPVARADPRETRVP 193
|
Length = 418 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAE 66
K+ + V A L +D + ++ DG Q T + L+P+W+E + V
Sbjct: 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVG--- 57
Query: 67 SMPTEILEINLYNDKKTGKRST-FLGKVKI 95
P+ I+ I +++ KK K+ FLG V+I
Sbjct: 58 --PSSIITIQVFDQKKFKKKDQGFLGCVRI 85
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 11 VEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPT 70
V V +A+ L +D G A YVI+ +G+ R+ + L+P++D + F S
Sbjct: 7 VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRS--- 63
Query: 71 EILEINLYNDKKTGKRSTFLGKVKIAGS 98
I I ++N FLG+ ++
Sbjct: 64 PIK-IQVWNSNLL--CDEFLGQATLSAD 88
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 6/123 (4%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTK-TKFRDLNPQWDERLEFLVHDAES 67
L V + +AK L D G YVI+ Q R++K K NP+W+E+ +F V
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW 62
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYY--PLEKRSVFSQI--K 123
L + + DK F+G+ I + G E P + V K
Sbjct: 63 GGDTKLILRIM-DKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKYNVVLEDDTYK 121
Query: 124 GEI 126
GEI
Sbjct: 122 GEI 124
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (106), Expect = 2e-04
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 148 AEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKP--KEEKPPEENTNPKPAEA 205
++PA KP AA DKPPEKA ++ EK + K EK K +P E K A+
Sbjct: 369 SKPAEKP-AAATDKPPEKA-SDKPSPEKTSEKTPDKSHEKQLDKSSEPVAEKALDKTADK 426
Query: 206 PPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTE 241
P AAA + P +D+P A+D ++ E
Sbjct: 427 PDAAARL----------PAETADRPPRARDASSSAE 452
|
Length = 467 |
| >gnl|CDD|180536 PRK06347, PRK06347, autolysin; Reviewed | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 2e-04
Identities = 59/231 (25%), Positives = 83/231 (35%), Gaps = 66/231 (28%)
Query: 72 ILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVY 131
ILE L +KK K F IAG T +S+ P G++V
Sbjct: 9 ILEA-LQEEKKNKKSKKFKTGATIAGVT----AIATSITVP--------------GIEVI 49
Query: 132 YIDEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEE 191
+ D APA EA+ AE T EA A PE + ++ T E +
Sbjct: 50 -VSADETAPADEASKSAEANTTKEAP-ATATPENTTEPTVEPKQTETKE---------QT 98
Query: 192 KPPEENTNPKPAEAPPAAAAVAATPVE---VQNPPLAQSDKPSNAKDKATVTETKTQELR 248
K PEE PAA V P E V NP D AT + T
Sbjct: 99 KTPEEKQ--------PAAKQVEKAPAEPATVSNP------------DNATSSSTPATYNL 138
Query: 249 LNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAGNVSNGSLYAKLVI 299
L + LRS + +S +++ ++A + + LYA ++I
Sbjct: 139 LQKSALRSGATVQS-------------FIQTIQASSSQIAAENDLYASVMI 176
|
Length = 592 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 31 YVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMP--TEILEINLYNDKKTGKRST 88
YV V F GQ+ +T K NP+W+E++ F E P E ++I + + + G
Sbjct: 38 YVEVSFAGQKVKTSVKKNSYNPEWNEQIVF----PEMFPPLCERIKIQIRDWDRVGNDDV 93
Query: 89 ----FLGKVKIAGSTF 100
F+ KI+ S
Sbjct: 94 IGTHFIDLSKISNSGD 109
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 274 FLYVRVLKAK---RAGNVSNGSLYAKL-VIGTHSIKTKSQADKD-----WDQVFAFDKEG 324
L V+++ A+ Y K+ + G K K++ K+ W++ F F+
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 325 LNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPD 367
LE+ V+ +++ ++ +G V L ++ +
Sbjct: 61 PELAELEIEVYDKDRFGRDD----FIGQVTIPLSDLLLGGRHE 99
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 606 KDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFD 660
KD T GT+D YV + G RT+TI NP WNE++ ++ ++ + + V+D
Sbjct: 16 KDKT-GTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWD 69
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 28/123 (22%)
Query: 138 PAPAPEAAAVAEPATKPEAA------------VADKP--PEKAVGEEKKEEKPATVEGKK 183
A AA A PA +P A ADK K +K +KPA +
Sbjct: 278 AAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAKPAAADKAADKPA--DRPD 335
Query: 184 EEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETK 243
EK EKP E P+ A+ P AA A+ + +DKP + D A T +
Sbjct: 336 AAEKAA-EKPAE--AAPRAADKPAGQAADPAS---------SSADKPGASADAAARTPAR 383
Query: 244 TQE 246
++
Sbjct: 384 ARD 386
|
Length = 413 |
| >gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 22/109 (20%), Positives = 28/109 (25%), Gaps = 4/109 (3%)
Query: 134 DEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKP 193
D PP A E A A+ AT A V + KK + ++ E
Sbjct: 197 DLLPPGQAREQAQGAKSATAAPATVPQ-AAPLPQAQPKKAATEEELI-ADAKKAATGEPA 254
Query: 194 PEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTET 242
KP P A A + TVT
Sbjct: 255 ANAAKAAKPEPMPDDQQKEAEQLQA--AIAQAIGGVAGKLAEGVTVTPV 301
|
Length = 423 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 580 KQLAKSP----IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRF 635
LA+S IG L V I +L P + G +D Y G + +T+ + D
Sbjct: 3 AYLARSQRASGIGRLMVVIVEGRDLKPCNSN----GKSDPYCEVSMGSQEHKTKVVSDTL 58
Query: 636 NPRWNEQYTWDVYD-PCTVLTIGVFDNGRYKRDE-AGKPGKDVRVGKIR 682
NP+WN + V D VL I VFD + D+ G+ ++RV I
Sbjct: 59 NPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGR--TEIRVADIL 105
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 3/89 (3%)
Query: 133 IDEDPPAPAPEAAAVAEPATKPEAAVADKPPEK---AVGEEKKEEKPATVEGKKEEEKPK 189
+ E P AVA+ + V + E E E A E + P
Sbjct: 924 VTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPV 983
Query: 190 EEKPPEENTNPKPAEAPPAAAAVAATPVE 218
+ E E A A V VE
Sbjct: 984 VAEVAAEVETVTAVEPEVAPAQVPEATVE 1012
|
Length = 1068 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 8/127 (6%)
Query: 15 NAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEF-LVHDAESMPTEIL 73
+ KNL G+G V F G +++T+ +LNP W+E E+ L + P E L
Sbjct: 4 SLKNLPGLKGKG--DRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPD--PDESL 59
Query: 74 EINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133
EI + + +K G+ +G ++ G V PL S I L+V Y
Sbjct: 60 EIVVKDYEKVGRNR-LIGSATVSLQDLVSEGL-LEVTEPL-LDSNGRPTGATISLEVSYQ 116
Query: 134 DEDPPAP 140
D
Sbjct: 117 PPDGAVG 123
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 19/83 (22%), Positives = 22/83 (26%)
Query: 134 DEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKP 193
PA AP+ A PA P + + P A A P
Sbjct: 421 AAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAP 480
Query: 194 PEENTNPKPAEAPPAAAAVAATP 216
A PAA A A P
Sbjct: 481 APAPPAAPAPAAAPAAPAAPAAP 503
|
Length = 824 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 6e-04
Identities = 31/107 (28%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 137 PPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVE----GKKEEEKPKEEK 192
A A A A A PA P A D PP + + E PA + G E P
Sbjct: 472 VAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPAT 531
Query: 193 PPEENTNPKPAEAPPAAAAVAAT----PVEVQNPPLAQSDKPSNAKD 235
++ A AP AA A A PV PP A + + D
Sbjct: 532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFD 578
|
Length = 700 |
| >gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein) | Back alignment and domain information |
|---|
Score = 42.1 bits (98), Expect = 6e-04
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 138 PAPAPEAAAVAEPATKPEAAVA---DKPPEKAVGEEKKEEKPATV--EGKKEEEKPKEEK 192
PA EA +E +++P + A ++ K GE KK E PA E K + + K
Sbjct: 120 PAAGGEAPKASEASSQPAESAAPAKEEEKSKEEGEAKKTEAPAAAAQETKSDAAPASDSK 179
Query: 193 PPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNA 233
P P E P A A ++T A+ KPS A
Sbjct: 180 PSSSEAAPSSKETPAATEAPSSTAKASAPAAPAEEVKPSEA 220
|
This family consists of several brain acid soluble protein 1 (BASP1) or neuronal axonal membrane protein NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent calmodulin-binding protein of unknown function. Length = 233 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 22/103 (21%), Positives = 24/103 (23%), Gaps = 7/103 (6%)
Query: 136 DPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPE 195
PPA A A A A AA A + P E A + P
Sbjct: 401 APPAAPAAAPAAAAAARAVAAAPARRSP-------APEALAAARQASARGPGGAPAPAPA 453
Query: 196 ENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKAT 238
P A P AA P A D
Sbjct: 454 PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP 496
|
Length = 700 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 4/116 (3%)
Query: 135 EDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATV-EGKKEEEKPKEEKP 193
E A + V A + E+P V E + EE E
Sbjct: 857 EQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTH 916
Query: 194 PE---ENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKTQE 246
PE +P + AVA E P + D+ ++ ++ A E E
Sbjct: 917 PEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAE 972
|
Length = 1068 |
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 8e-04
Identities = 21/138 (15%), Positives = 39/138 (28%)
Query: 135 EDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPP 194
E+ A A EAAA A A P E+A E A + +
Sbjct: 54 EEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARR 113
Query: 195 EENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKTQELRLNEHEL 254
+ + P + + K + K ++ + E
Sbjct: 114 PKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIP 173
Query: 255 RSLTSDRSRSAYDLVDRM 272
R + + + +L ++M
Sbjct: 174 REVVIPETITVAELAEKM 191
|
Length = 746 |
| >gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 8e-04
Identities = 31/115 (26%), Positives = 33/115 (28%), Gaps = 14/115 (12%)
Query: 137 PPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEE 196
PA AP A A A PA A A P PA
Sbjct: 388 APAAAPVAQAAAAPAPAAAPAAAASAPAAP---------PAAAPPAPVAAPAAAAPAAAP 438
Query: 197 NTNPKPAEAPPAAAAVAA-----TPVEVQNPPLAQSDKPSNAKDKATVTETKTQE 246
P PA A AA PV V P S P+ A A T T+E
Sbjct: 439 AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
|
Length = 618 |
| >gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP) | Back alignment and domain information |
|---|
Score = 40.3 bits (93), Expect = 9e-04
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 123 KGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGK 182
KGE G KV D + P E EP + E E+ EE+ EE+P E
Sbjct: 43 KGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEE------GEEEPEPEEEGEEEPEPEETG 96
Query: 183 KEEEKPKEEKPPEENTNPKPAEAPPAAAA 211
+EE +P+ E PE P+P P AA
Sbjct: 97 EEEPEPEPEPEPEPEPEPEPEPEPEPGAA 125
|
This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated. Length = 145 |
| >gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 9e-04
Identities = 24/115 (20%), Positives = 33/115 (28%), Gaps = 8/115 (6%)
Query: 136 DPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKE---EK 192
AP A T A + + K+ +PA + E
Sbjct: 403 PASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASV 462
Query: 193 PPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKTQEL 247
P + K A A PVEV+ P+A K + KT EL
Sbjct: 463 RPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKAL-----KKALEHEKTPEL 512
|
Length = 647 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 9e-04
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 570 HVTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGT-RGTTDAYVVAKYGPKWV-R 627
+T D+ + + IG++EV I+ A L K D T GT D Y+ + + + +
Sbjct: 418 SLTIDISQIMAGDSGTAIGVVEVKIKSAEGL---KKSDSTINGTVDPYITVTFSDRVIGK 474
Query: 628 TRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLST 687
TR + NP WNE + + L + ++D +K D VG ++ L+
Sbjct: 475 TRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFK--------SDKVVGSTQLDLAL 526
Query: 688 LDTNRVYLN 696
L N V N
Sbjct: 527 LHQNPVKKN 535
|
Length = 1227 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKT-KFRDLNPQWDERLEFLVHDAE 66
L V V A++L+P D +V Q RT+ + R+ NP W+E L F+
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVA---- 56
Query: 67 SMPTEILEINLY---NDKKTGKRSTFLGKVKIAGSTFAK 102
E E +L D+ + LG+ I + +
Sbjct: 57 ---AEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIER 92
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
L V V NL +D ++ YV++ Q+ +T+ ++LNP W+E L V +
Sbjct: 3 LLKVRVVRGTNLAVRD-FTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPN--- 58
Query: 68 MPTEILEINLYNDKKTGKRSTFLG 91
P L++ ++ DK T + +G
Sbjct: 59 -PMAPLKLEVF-DKDTFSKDDSMG 80
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 24/107 (22%), Positives = 30/107 (28%), Gaps = 1/107 (0%)
Query: 137 PPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEE 196
P P AA A A P A P A A ++ P+ +
Sbjct: 380 APVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSP-APEALAAARQ 438
Query: 197 NTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETK 243
+ P AP A A AA P P A + A A
Sbjct: 439 ASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAP 485
|
Length = 700 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 19/91 (20%), Positives = 21/91 (23%), Gaps = 5/91 (5%)
Query: 135 EDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEE-----KKEEKPATVEGKKEEEKPK 189
PAPA PA P +PA E
Sbjct: 420 AAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAA 479
Query: 190 EEKPPEENTNPKPAEAPPAAAAVAATPVEVQ 220
P P A A PAA A A +
Sbjct: 480 PAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
|
Length = 824 |
| >gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 22/83 (26%), Positives = 25/83 (30%), Gaps = 1/83 (1%)
Query: 135 EDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPP 194
AP AAA P P AA P A P + P P
Sbjct: 410 AASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPE 469
Query: 195 EENTNPKPAEAP-PAAAAVAATP 216
+ PA A PAAA + T
Sbjct: 470 PAVASAAPAPAAAPAAARLTPTE 492
|
Length = 618 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 5/134 (3%)
Query: 134 DEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKP--ATVEGKKEEEKPK-- 189
+E + K EA P EK +EKK E+P E K+E + K
Sbjct: 115 EEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSR 174
Query: 190 EEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKTQELRL 249
+KPP++ K E P A V + D + + + +
Sbjct: 175 PKKPPKKKPPNKKKEPPEEEKQRQAAREAV-KGKPEEPDVNEEREKEEDDGKDRETTTSP 233
Query: 250 NEHELRSLTSDRSR 263
E + +S+ SR
Sbjct: 234 MEEDESRQSSEISR 247
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDF---DGQRRRTKTKFRDLNPQWDERLEF 60
L +++ A L KD GT+ +V + + TK K ++LNP W+E F
Sbjct: 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 72
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 139 APAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEE 186
A A AA A A AA A E+ EE++EE+ + + EEE
Sbjct: 57 AAAAPVAAAAAAA----AAAAAAAAEEKKEEEEEEEE----KEESEEE 96
|
Length = 106 |
| >gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 138 PAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEEN 197
P PE AA AA + P A E +PA VE + KP E KP +
Sbjct: 64 PTQPPEGAA-EAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVE--PPKPKPVE-KPKPKP 119
Query: 198 TNPKPAEAPPAAAAVAATPVEVQNPPLAQ 226
+ EAPPA VE + P +
Sbjct: 120 KPQQKVEAPPAPKPEPKPVVEEKAAPTGK 148
|
Length = 226 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 34/131 (25%)
Query: 266 YDLVDRMPFLYVRVLKAKRAGNVSNGSL---YAKLVI--GTHSIKTKSQ---ADKD---- 313
YD V L V VL+A+ +GSL Y K+ + S K+K + K
Sbjct: 11 YDKVTSQ--LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDR-SEKSKRRTKTVKKTLNPE 67
Query: 314 WDQVFAFD---KEGLNSTSLEVSVWSEEK-KENEECTENCLGTVLFDLQEVPKRVPPDSP 369
W+Q F + +E L +LEV+VW ++ EN+ LG V+ DL D+
Sbjct: 68 WNQTFEYSNVRRETLKERTLEVTVWDYDRDGEND-----FLGEVVIDLA--------DAL 114
Query: 370 L--APQWYSLE 378
L P WY L+
Sbjct: 115 LDDEPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|216860 pfam02063, MARCKS, MARCKS family | Back alignment and domain information |
|---|
Score = 41.4 bits (96), Expect = 0.002
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 24/122 (19%)
Query: 145 AAVAEPATKPEAAVADKP--------PEKAVGEEKKEEK------PATVE-GKKEE---- 185
A ++ A K EAA A++P P KA G+E K PA E G KEE
Sbjct: 2 AQFSKTAAKGEAATAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAEAGAKEELQAN 61
Query: 186 -EKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKT 244
P EE EE + AE AAA+ + P A+ +P++ + T T
Sbjct: 62 GSAPAEETGKEEAASAAAAEEKEAAAS----TEPDKEPAEAEPAEPASPAEAEGEAATST 117
Query: 245 QE 246
++
Sbjct: 118 EK 119
|
Length = 296 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 8/108 (7%)
Query: 135 EDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEE-KPATVEGKKEEEKPKEEKP 193
E +A P T+ + + AV +E E +P E + +
Sbjct: 908 EVVVVETTHPEVIAAPVTEQPQVIT--ESDVAVAQEVAEHAEPVV-----EPQDETADIE 960
Query: 194 PEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTE 241
T P A AA V + A V E
Sbjct: 961 EAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPE 1008
|
Length = 1068 |
| >gnl|CDD|176073 cd08691, C2_NEDL1-like, C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 38 GQRRRTKTKFRDLNPQWD-ERLEFLVHDAESMPTEILEINLYNDKKTGKR---STFLGKV 93
GQ RT +NP W E+ F+ +PT++LEI + DK R FLGK+
Sbjct: 44 GQECRTSIVENTINPVWHREQFVFV-----GLPTDVLEIEV-KDKFAKSRPIIRRFLGKL 97
Query: 94 KI-AGSTFAK-VGSESSVYYPLEKRSVFSQIKGEIGLKV 130
I + + + Y L +R+ + G++ +
Sbjct: 98 SIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 137 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.002
Identities = 33/119 (27%), Positives = 42/119 (35%), Gaps = 5/119 (4%)
Query: 138 PAPAPEAAA--VAEPATKPEAAVADKP-PEKAVGEEKKEE-KPATVEGKKEEEKPKEEKP 193
PAPAP AA +PA P +A + KP +A E+ PA + P
Sbjct: 42 PAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPAVA 101
Query: 194 PEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKTQELRLNEH 252
P+ PKP A +A A A S KP A + R EH
Sbjct: 102 PQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQH-SPPPFAYTRSMEH 159
|
Length = 566 |
| >gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.002
Identities = 26/165 (15%), Positives = 31/165 (18%), Gaps = 64/165 (38%)
Query: 134 DEDPPAPAPEAAAVAEPATKPEAAVADKPPE----------------------------- 164
A AP AAA A A A P
Sbjct: 79 GAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPDIGEITEVEVIEW 138
Query: 165 -KAVGEEKKEEKP-ATVEGKK---------------------------------EEEKPK 189
VG+ +E++ TVE K E
Sbjct: 139 LVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAAAA 198
Query: 190 EEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAK 234
A A A A A A + P A
Sbjct: 199 PAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAP 243
|
Length = 547 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 601 LPVKTKDGTRGTTDAYV-VAKYGPKWV-----RTRTILDR-FNPRWNEQYTWDVYDP-CT 652
LP K K D YV V +G +T+ + + FNP WNE + +DV P
Sbjct: 14 LP-KPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELA 72
Query: 653 VLTIGVFDNGRYKRDEAG 670
L V+D D G
Sbjct: 73 FLRFVVYDEDSGDDDFLG 90
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|197773 smart00527, HMG17, domain in high mobilty group proteins HMG14 and HMG 17 | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.002
Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 146 AVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEA 205
A +P KP+ A A K E + KK K GK+ EE KEE P EN K EA
Sbjct: 28 APPKPEPKPKKAAAKKKSENVAAKGKKGAK-----GKQTEEAGKEENNPAENGETKSEEA 82
Query: 206 PPAAAA 211
P A A
Sbjct: 83 PAAEGA 88
|
Length = 88 |
| >gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 39/142 (27%), Positives = 49/142 (34%), Gaps = 39/142 (27%)
Query: 136 DPPAPAPEAAAVAEPATKPEAAVADKP---PE------------KAVGEEKKEEKP-ATV 179
+ PA AP AA A PA P AA K P+ VG++ + E+ TV
Sbjct: 182 EAPAAAPAAAEAAAPAAAPAAAAGVKDVNVPDIGGDEVEVTEVMVKVGDKVEAEQSLITV 241
Query: 180 EGKKEE-EKP-------KEEKPPE---------------ENTNPKPAEAPPAAAAVAATP 216
EG K E P KE K E P A A AAA A
Sbjct: 242 EGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAA 301
Query: 217 VEVQNPPLAQSDKPSNAKDKAT 238
+ + P A + K + A
Sbjct: 302 AKAEAPAAAPAAKAEGKSEFAE 323
|
Length = 633 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.003
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 31 YVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES-MPTEILEINLYNDKKTGKRSTF 89
V V+ GQ++ T K P ++E F H++ + +I++I++Y D ++ + T
Sbjct: 24 VVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY-DSRSLRSDTL 82
Query: 90 LGKVKI 95
+G K+
Sbjct: 83 IGSFKL 88
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 17/101 (16%)
Query: 137 PPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEE 196
AP+P A P+T+P+AA A P K E PP
Sbjct: 373 AAAPSPVRPTPA-PSTRPKAAAAANIPPKEP---------------VRETATPPPVPPRP 416
Query: 197 NTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKA 237
P P P +A + + V P P ++KA
Sbjct: 417 VAPPVP-HTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKA 456
|
Length = 585 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 41/143 (28%)
Query: 429 LRLTVIQTQDLQPG---------SGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSS 479
LR+ VI+ QDL S+P YV ++GAQ FK+ + +
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDP-------YVIVRVGAQTFKS-KVI-----KEN 49
Query: 480 ANPTWNEDLVFVAAEPFEPFLVVTVE----DVTNGCSVGHARIQMSTVE--RRIDDRAEP 533
NP WNE V+ A P + +E D +G I + +VE ID+
Sbjct: 50 LNPKWNE--VYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDE---- 103
Query: 534 KSRWFNLVGDETRPYAGRIHLRA 556
W L ++ GR+HL+
Sbjct: 104 ---WLPLEDVKS----GRLHLKL 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.004
Identities = 27/106 (25%), Positives = 35/106 (33%), Gaps = 13/106 (12%)
Query: 120 SQIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAV---ADKPPEKAVGEEKKEEKP 176
+ KGE K D+ PA A + A KP A ADKP +A P
Sbjct: 310 AADKGERAAKPAAADKAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQA-------ADP 362
Query: 177 ATVEGKKEEEKPKEEKPPEENTN---PKPAEAPPAAAAVAATPVEV 219
A+ K A+ PP A++AA V
Sbjct: 363 ASSSADKPGASADAAARTPARARDAAAPDADTPPGGASLAAAQARV 408
|
Length = 413 |
| >gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 168 GEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQS 227
G PA K E+ E+ T PA + P A A P
Sbjct: 121 GGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK---- 176
Query: 228 DKPSNAKDKATVTETKTQELRL 249
P +A ET+ R+
Sbjct: 177 -PPPTPVARADPRETRVPMSRM 197
|
Length = 418 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 628 TRTILDRFNPRWNEQYTWDVYD-PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVR 684
T +P+WNE + D+ P +++TI VFD ++K+ + G G +IR
Sbjct: 37 TDVAKKTLDPKWNEHF--DLTVGPSSIITIQVFDQKKFKKKDQGFLG----CVRIRAN 88
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein) | Back alignment and domain information |
|---|
Score = 39.8 bits (92), Expect = 0.004
Identities = 32/118 (27%), Positives = 40/118 (33%), Gaps = 14/118 (11%)
Query: 134 DEDPPAPAPEAAAVAEP----ATKPEAAVADKPPEKAVGEEKKEEK--PATVEGKKEEEK 187
+E P EA A AE K E D EEK+ EK A E + E
Sbjct: 32 EEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKEEAPKAEP 91
Query: 188 PKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPP--------LAQSDKPSNAKDKA 237
K E E P A P A A P P A+S P+ ++K+
Sbjct: 92 EKTEGAAEAKAEPPKASDPEQEPAAAPGPAAGGEAPKASEASSQPAESAAPAKEEEKS 149
|
This family consists of several brain acid soluble protein 1 (BASP1) or neuronal axonal membrane protein NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent calmodulin-binding protein of unknown function. Length = 233 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 983 | |||
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 100.0 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.93 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.9 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.87 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.87 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.87 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.86 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.85 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.84 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.84 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.83 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.83 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.81 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.8 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.8 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.8 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.79 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.79 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.78 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.77 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.77 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.77 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.76 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.75 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.75 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.75 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.75 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.75 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.75 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.75 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.75 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.74 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.74 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.74 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.74 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.74 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.74 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.74 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.73 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.73 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.73 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.73 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.72 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.72 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.72 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.72 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.72 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.71 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.71 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.71 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.71 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.71 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.7 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.7 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.7 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.69 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.69 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.69 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.69 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.69 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.68 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.68 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.68 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.67 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.67 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.67 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.67 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.67 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.66 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.66 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.66 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.66 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.66 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.66 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.66 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.66 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.65 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.65 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.65 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.65 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.65 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.65 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.65 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 99.64 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.64 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.64 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.64 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.64 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.64 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.64 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.63 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.63 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.63 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.63 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.63 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.63 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.63 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.63 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.62 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.62 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.62 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.62 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.62 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.62 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.62 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.61 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.61 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.61 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.61 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.61 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.61 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.6 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.6 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.6 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.6 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.6 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.6 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.59 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.59 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.59 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.59 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.58 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.58 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.58 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.58 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.58 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.58 | |
| PLN03008 | 868 | Phospholipase D delta | 99.58 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.57 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.57 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.57 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.57 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.57 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.56 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.56 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.56 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.56 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.56 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.56 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.55 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.55 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.55 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.55 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.55 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.54 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.53 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.53 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.53 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.52 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.52 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.52 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.52 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.52 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.51 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.51 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.51 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.5 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.5 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.5 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.49 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.49 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.49 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.49 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.48 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.48 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.48 | |
| PLN03008 | 868 | Phospholipase D delta | 99.48 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.48 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.48 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.47 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.47 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.47 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.47 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.46 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.46 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.46 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.46 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.46 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.45 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.44 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.44 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.44 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.44 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.44 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.43 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.43 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.43 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.43 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.42 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.41 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.41 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.39 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.38 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.38 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.36 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.36 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.3 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.28 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.26 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.26 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.23 | |
| PLN02270 | 808 | phospholipase D alpha | 99.19 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.19 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.17 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.09 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.04 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.03 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.03 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.0 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.0 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 98.98 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 98.98 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.97 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.9 | |
| PLN02270 | 808 | phospholipase D alpha | 98.9 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.87 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.81 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.79 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.78 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.76 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.75 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.75 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.75 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.73 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.73 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.71 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.68 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.65 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.47 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.46 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.41 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.34 | |
| PF04842 | 683 | DUF639: Plant protein of unknown function (DUF639) | 98.16 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.16 | |
| PF06398 | 359 | Pex24p: Integral peroxisomal membrane peroxin; Int | 98.14 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.01 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 97.87 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 97.86 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 97.63 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 97.37 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.36 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.27 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.27 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.03 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 96.96 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.95 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.72 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 96.67 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.38 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.38 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.37 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 95.79 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.44 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.27 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 94.71 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.56 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.42 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 93.9 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 92.77 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 92.74 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 92.3 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 92.06 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 92.0 | |
| KOG4269 | 1112 | consensus Rac GTPase-activating protein BCR/ABR [S | 91.77 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 91.62 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 91.48 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 91.15 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 90.93 | |
| cd01459 | 254 | vWA_copine_like VWA Copine: Copines are phospholip | 90.92 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 90.55 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 90.34 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 89.47 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 89.27 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 87.78 | |
| PTZ00447 | 508 | apical membrane antigen 1-like protein; Provisiona | 87.15 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 86.99 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 85.24 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 83.17 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 82.85 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 82.71 | |
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 82.33 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 81.48 |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=380.72 Aligned_cols=151 Identities=60% Similarity=1.047 Sum_probs=146.2
Q ss_pred HHHHHhhhhccccccCCCCCCCCCCCcccCCCCCccccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 002002 833 LLVAVVLSLRFRYRQRVPQNMDPRLSYVDVVGPDELDEEFDGFPTSRPSEVVRIRYDRLRALAGRAQTLLGDVAAQGERL 912 (983)
Q Consensus 833 ~~~~~v~~~~y~~~~~~~~~~d~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~r~~~l~~~~~~vQ~~~~~~a~~~Er~ 912 (983)
+|++++.+|||++|||+|+|||+++|+++.+++||+|||||++|+++++++|++|||+||++++||||++||+|++|||+
T Consensus 6 l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl 85 (156)
T PF08372_consen 6 LYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERL 85 (156)
T ss_pred HHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444458999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccChhhHHHHHHHHHHHHHHHhhhhhhhhhhheeeecccCCCCCCCCCCchhhhhhcCCCCccCCC
Q 002002 913 EALFNWRDPRATWIFVVLCLVASLVFYAVPFKLFVLGSGFYYLRHPRFRGDMPSVPVNFVRRLPSLSDQIL 983 (983)
Q Consensus 913 ~~l~~w~~p~~t~~~~~~~~~~~~~l~~vp~r~~~~~~g~~~~r~p~~~~~~p~~~~~f~~r~p~~~d~~~ 983 (983)
+|+|||+||++|++|+++|+++++++|+||+||++++||+|++|||+||.++|+.++|||+||||++|+||
T Consensus 86 ~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 86 QALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=326.89 Aligned_cols=537 Identities=20% Similarity=0.271 Sum_probs=378.2
Q ss_pred CCcEEEEEEEEeeCCCCCC--CCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKD--GQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
+.++|.|+|.+|++|...+ ..++.|||+++.+.+ ...||+++++++||+|||+|+..+..- .+.|.++|||.+
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~----~d~L~LslyD~n 509 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF----TDPLNLSLYDFN 509 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc----CCceeEEEEecc
Confidence 3489999999999999988 578999999999865 677999999999999999999999876 789999999877
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecCCCCCCCcccccccCCCCCCCcccCCC
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVADK 161 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (983)
... +|+.+|.+.++|..+...+-..+.-+.+... +...|+|+..+.|++-.... ++
T Consensus 510 ~~~-sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~---~k~vGrL~yDl~ffp~~e~k-----~~--------------- 565 (1227)
T COG5038 510 SFK-SDKVVGSTQLDLALLHQNPVKKNELYEFLRN---TKNVGRLTYDLRFFPVIEDK-----KE--------------- 565 (1227)
T ss_pred ccC-CcceeeeEEechHHhhhccccccceeeeecc---CccceEEEEeeeeecccCCc-----cc---------------
Confidence 776 8999999999999998555555555555433 23569999999988432210 00
Q ss_pred CCCcccccccccCCcccccCcccccCCCCCCCCCCCCCCCCCCCCchhhccCCCCCccCCCCCCCCCCCCcccccccccc
Q 002002 162 PPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTE 241 (983)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 241 (983)
. ... .| . +
T Consensus 566 --~-------~~s--------------~e-~-----------------------------~------------------- 573 (1227)
T COG5038 566 --L-------KGS--------------VE-P-----------------------------L------------------- 573 (1227)
T ss_pred --c-------ccc--------------cC-C-----------------------------c-------------------
Confidence 0 000 00 0 0
Q ss_pred ccccccccCccccccccCCCCCCcccccCCcCEEEEEEEEeecCC-CCCCCCc-EEEEEEcCee-eeeeec--CC-Cccc
Q 002002 242 TKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAG-NVSNGSL-YAKLVIGTHS-IKTKSQ--AD-KDWD 315 (983)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~V~v~~a~~L~-~~~~~dP-yv~v~~~~~~-~kTk~~--~~-P~Wn 315 (983)
. | .+.|.+.+++.++++|. ..++-+- +++++++++. +.|+.+ +. |.||
T Consensus 574 --------e----------------d--~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn 627 (1227)
T COG5038 574 --------E----------------D--SNTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWN 627 (1227)
T ss_pred --------c----------------c--CCcceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCcee
Confidence 0 0 01278999999999987 3333333 3999999987 455666 77 9999
Q ss_pred eEEEEeecCCCCCeEEEEEEcCCcCCccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccCCCCCceEEEEE-Eec
Q 002002 316 QVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAV-WIG 394 (983)
Q Consensus 316 e~f~f~~~~~~~~~l~v~V~d~d~~~~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~~~~~g~i~l~~-~~g 394 (983)
+.+...+.+.....+.+.++|. ...+.+|.....|.++..+... .-.||++.. .+|+|.++. |-+
T Consensus 628 ~~~~~~v~~~~ns~~~~~~~d~-------~~g~~i~~~~~~l~~li~~t~d----t~~~f~~~~---~kg~I~~t~~W~P 693 (1227)
T COG5038 628 LQYNVLVTDRKNSSIKVVTFDV-------QSGKVIATEGSTLPDLIDRTLD----TFLVFPLRN---PKGRIFITNYWKP 693 (1227)
T ss_pred eecceEeccCcceeEEEEeccc-------ccCceeccccccchHhhhcccc----ceEEEEcCC---CcceEEEEeccce
Confidence 9999999988888999999994 2567888888888887655442 237999984 358898887 322
Q ss_pred cCcchhhhhhcccCCCCCCcccccccccCCceEEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECC-eEEEeeeeeec
Q 002002 395 TQADEAFQEAWQSDSGGLIPETRAKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGA-QLFKTGRTSVG 473 (983)
Q Consensus 395 ~~~de~~~~~~~s~~~~~~~~~~~~~~~~p~l~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~-~~~rT~~~~~~ 473 (983)
.+.+. ...++.+....++.+||.|..|.+|... ...+++|||+++.+++ .++||-...
T Consensus 694 i~~~~---------------~~~s~~~~~~pIg~irv~v~~andl~n~----i~g~~~dPya~v~~n~~~k~rti~~~-- 752 (1227)
T COG5038 694 IYNAG---------------GSSSKTVYDTPIGAIRVSVRKANDLRNE----IPGGKSDPYATVLVNNLVKYRTIYGS-- 752 (1227)
T ss_pred eeccc---------------cccceeeecCccceEEEEeehhhccccc----ccCcccccceEEEecceeEEEEeccc--
Confidence 21111 1133445677788999999999999965 7889999999999976 566776553
Q ss_pred cCCCCCCCCcccceEEEEecCCCCCcEEEEEEeCc---CCceeEEEEEecccccccccCCC---------CCc-------
Q 002002 474 LSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVT---NGCSVGHARIQMSTVERRIDDRA---------EPK------- 534 (983)
Q Consensus 474 ~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D~d---~d~~lG~~~i~L~~l~~~~~~~~---------~~~------- 534 (983)
.++||.|++.....+..+.+ .+.+.++|.. +|..+|++.++++++..+.++.. ...
T Consensus 753 ----~~~npiw~~i~Yv~v~sk~~-r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~ 827 (1227)
T COG5038 753 ----STLNPIWNEILYVPVTSKNQ-RLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGK 827 (1227)
T ss_pred ----CccccceeeeEEEEecCCcc-EEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccC
Confidence 69999999998887776554 4777777766 88999999999998776322210 000
Q ss_pred ---------ceEEe------c-----------------------cC-------CC----C--------------------
Q 002002 535 ---------SRWFN------L-----------------------VG-------DE----T-------------------- 545 (983)
Q Consensus 535 ---------~~w~~------L-----------------------~~-------~~----~-------------------- 545 (983)
-+.|+ + .. .. +
T Consensus 828 ~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~ln 907 (1227)
T COG5038 828 KVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLN 907 (1227)
T ss_pred CcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhh
Confidence 00000 0 00 00 0
Q ss_pred ---CCcceEE--------------EEEEEEec-ccccccccc-------------------ccC------------Cc--
Q 002002 546 ---RPYAGRI--------------HLRACLEG-GYHVLDEAA-------------------HVT------------SD-- 574 (983)
Q Consensus 546 ---~~~~G~l--------------~l~i~l~g-~~~v~~~~~-------------------~~~------------~d-- 574 (983)
.-..|.+ .+.+.++. +|+..-.+. .++ +|
T Consensus 908 e~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~ 987 (1227)
T COG5038 908 EALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKV 987 (1227)
T ss_pred hhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCce
Confidence 0001111 12222221 111100000 000 00
Q ss_pred ----hhHH---HHh----------------h----cc------------CCcEEEEEEEceeccccccccCCCCCCCCCc
Q 002002 575 ----VRAA---AKQ----------------L----AK------------SPIGLLEVGIRGATNLLPVKTKDGTRGTTDA 615 (983)
Q Consensus 575 ----~~~~---~~~----------------l----~~------------~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDp 615 (983)
.-++ .++ + |. ...|-|.+.+.+|.||++. |. +|.+||
T Consensus 988 v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~---d~-ng~sDp 1063 (1227)
T COG5038 988 VCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSS---DE-NGYSDP 1063 (1227)
T ss_pred eeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCccc---cc-CCCCCc
Confidence 0000 000 0 00 2378899999999999776 66 899999
Q ss_pred EEEEEECCE-EEEeeeecCCCCCeeceEEEEEEec-CCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCe
Q 002002 616 YVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYD-PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV 693 (983)
Q Consensus 616 y~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~-~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~ 693 (983)
||++.+.++ .++|+++++|+||.|||+++++|.. -...++|.|+|||... +++.||.+.|+|+.|+.+..
T Consensus 1064 fv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~--------knd~lg~~~idL~~l~~~~~ 1135 (1227)
T COG5038 1064 FVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE--------KNDLLGTAEIDLSKLEPGGT 1135 (1227)
T ss_pred eEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCC--------CccccccccccHhhcCcCCc
Confidence 999999875 8899999999999999999999974 4559999999999876 67799999999999999988
Q ss_pred EEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 694 YLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 694 ~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+....+|..+. .+ ...|.++....|.
T Consensus 1136 ~n~~i~ldgk~-~~-~~~g~~~~~~~~r 1161 (1227)
T COG5038 1136 TNSNIPLDGKT-FI-VLDGTLHPGFNFR 1161 (1227)
T ss_pred cceeeeccCcc-eE-ecccEeecceecc
Confidence 88888887664 22 3458888877664
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-24 Score=249.49 Aligned_cols=391 Identities=17% Similarity=0.220 Sum_probs=289.3
Q ss_pred CCcCEEEEEEEEeecCC-----CCCCCCcEEEEEEcCe-eeeeeec--CC-CccceEEEEeecCCCCCeEEEEEEcCCcC
Q 002002 270 DRMPFLYVRVLKAKRAG-----NVSNGSLYAKLVIGTH-SIKTKSQ--AD-KDWDQVFAFDKEGLNSTSLEVSVWSEEKK 340 (983)
Q Consensus 270 ~~~~~L~V~v~~a~~L~-----~~~~~dPyv~v~~~~~-~~kTk~~--~~-P~Wne~f~f~~~~~~~~~l~v~V~d~d~~ 340 (983)
...|++.|+|.+|++|. ..+..|||+.+.+.+. ..||++. ++ |+|||+|+.++... ++.|.|+|||.+
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n-- 509 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN-- 509 (1227)
T ss_pred CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc--
Confidence 45699999999999997 2468899999998776 4799998 66 99999999999988 999999999965
Q ss_pred CccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccCCCCCceEEEEEE-eccCcchhhhhhcccCCCCCCcccccc
Q 002002 341 ENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVW-IGTQADEAFQEAWQSDSGGLIPETRAK 419 (983)
Q Consensus 341 ~~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~~~~~g~i~l~~~-~g~~~de~~~~~~~s~~~~~~~~~~~~ 419 (983)
++.+|+.+|+..++|..+..+..... +-+.+....+..|++...+. +.+-.+..-. .+ ...
T Consensus 510 --~~~sd~vvG~~~l~L~~L~~~~~~~n----e~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~------~~------s~e 571 (1227)
T COG5038 510 --SFKSDKVVGSTQLDLALLHQNPVKKN----ELYEFLRNTKNVGRLTYDLRFFPVIEDKKEL------KG------SVE 571 (1227)
T ss_pred --ccCCcceeeeEEechHHhhhcccccc----ceeeeeccCccceEEEEeeeeecccCCcccc------cc------ccC
Confidence 37899999999999998876654332 23444444567899999884 3322221100 00 000
Q ss_pred cccCCceEEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECCe-EEEeeeeeeccCCCCCCCCcccceEEEEecCCCCC
Q 002002 420 VYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQ-LFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEP 498 (983)
Q Consensus 420 ~~~~p~l~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~~-~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~~~ 498 (983)
.......+.+.+++.++++|... ......-++.+++..+ ++-|+..+ .+.+|.||+++...+..-...
T Consensus 572 ~~ed~n~GI~k~tl~~~~~l~~~-----~~~~~~~~a~l~~~~keV~st~~~k------~t~~~~wn~~~~~~v~~~~ns 640 (1227)
T COG5038 572 PLEDSNTGILKVTLREVKALDEL-----SSKKDNKSAELYTNAKEVYSTGKLK------FTNHPSWNLQYNVLVTDRKNS 640 (1227)
T ss_pred CcccCCcceeEEEeeccccccCc-----cccccceeEEEEecceEEeccceee------eccCCceeeecceEeccCcce
Confidence 01122357899999999999742 2222333388888654 55557664 589999999999888877777
Q ss_pred cEEEEEEeCcCCceeEEEEEecccccccccCCCCCcceEEeccCCCCCCcceEEEEEEEEeccccccccccccCCchhHH
Q 002002 499 FLVVTVEDVTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAA 578 (983)
Q Consensus 499 ~L~i~V~D~d~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~l~l~i~l~g~~~v~~~~~~~~~d~~~~ 578 (983)
.+.+.+.|....+.+|....+|.++..+. .....||++..+ +|+|.+..+..+.|...+.+
T Consensus 641 ~~~~~~~d~~~g~~i~~~~~~l~~li~~t----~dt~~~f~~~~~-----kg~I~~t~~W~Pi~~~~~~~---------- 701 (1227)
T COG5038 641 SIKVVTFDVQSGKVIATEGSTLPDLIDRT----LDTFLVFPLRNP-----KGRIFITNYWKPIYNAGGSS---------- 701 (1227)
T ss_pred eEEEEecccccCceeccccccchHhhhcc----ccceEEEEcCCC-----cceEEEEeccceeecccccc----------
Confidence 88899988667788999999998876432 456789999876 78999887655544221111
Q ss_pred HHhhccCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEE
Q 002002 579 AKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIG 657 (983)
Q Consensus 579 ~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~ 657 (983)
++.....++|.++|.|..|.+|. +... .|++|||+.+.+++ .++||-....++||.||+....++.++.+.+.++
T Consensus 702 s~~~~~~pIg~irv~v~~andl~---n~i~-g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~ 777 (1227)
T COG5038 702 SKTVYDTPIGAIRVSVRKANDLR---NEIP-GGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLE 777 (1227)
T ss_pred ceeeecCccceEEEEeehhhccc---cccc-CcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeee
Confidence 11122468999999999999994 4456 89999999999987 6889999999999999999999999999999999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccC----CCeEEEEE--Eeee-cCCCCCccceEEEEEEEEEec
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT----NRVYLNSY--SLTV-LLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~----~~~~~~~~--~L~~-~~~~g~~~~G~l~l~~~f~~~ 723 (983)
++|....+ .|..||.+.|+++++.. +..+..-. .... ....|.+.+|++.+..+|.+.
T Consensus 778 ~~~~~~sg--------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~ 842 (1227)
T COG5038 778 CMDYEESG--------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA 842 (1227)
T ss_pred eecchhcc--------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee
Confidence 99999988 78999999999999865 21111100 1111 112244557999999998753
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-23 Score=231.50 Aligned_cols=211 Identities=25% Similarity=0.370 Sum_probs=174.2
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKK 82 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~ 82 (983)
...|.|+|++|++|+++|..|.+||||++.+-. .+.+|+++++++||.|||+|.|.+.. .++....|.+.|||.|+
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~-~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPY-EELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCH-HHhccCEEEEEEEecCC
Confidence 467999999999999999778999999999943 78999999999999999999999765 45678999999999999
Q ss_pred CCCCCCccEEEEEECccceecCCeeeEEEEceecCCcce-eeeEEEEEEEEecCCCCCCCcccccccCCCCCCCcccCCC
Q 002002 83 TGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQ-IKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVADK 161 (983)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~-~~G~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (983)
++ ++++||++.++|..+.. ......|++|......+. ..|||.+.++|.+.
T Consensus 245 fs-r~~~iGev~~~l~~~~~-~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~-------------------------- 296 (421)
T KOG1028|consen 245 FS-RHDFIGEVILPLGEVDL-LSTTLFWKDLQPSSTDSEELAGELLLSLCYLPT-------------------------- 296 (421)
T ss_pred cc-cccEEEEEEecCccccc-cccceeeeccccccCCcccccceEEEEEEeecC--------------------------
Confidence 97 99999999999888762 233678999987643332 22788888877510
Q ss_pred CCCcccccccccCCcccccCcccccCCCCCCCCCCCCCCCCCCCCchhhccCCCCCccCCCCCCCCCCCCcccccccccc
Q 002002 162 PPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTE 241 (983)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 241 (983)
T Consensus 297 -------------------------------------------------------------------------------- 296 (421)
T KOG1028|consen 297 -------------------------------------------------------------------------------- 296 (421)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCccccccccCCCCCCcccccCCcCEEEEEEEEeecCC---CCCCCCcEEEEEEc--Ce---eeeeeec--CC
Q 002002 242 TKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAG---NVSNGSLYAKLVIG--TH---SIKTKSQ--AD 311 (983)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~V~v~~a~~L~---~~~~~dPyv~v~~~--~~---~~kTk~~--~~ 311 (983)
.+.|.|.|++||+|. ..+.+||||++.+- +. +.||.+. +.
T Consensus 297 ------------------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~ 346 (421)
T KOG1028|consen 297 ------------------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTL 346 (421)
T ss_pred ------------------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCC
Confidence 157999999999997 45688999999983 32 3566666 77
Q ss_pred -CccceEEEEeec--CCCCCeEEEEEEcCCcCCccccCCceeEEEEEeccc
Q 002002 312 -KDWDQVFAFDKE--GLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQE 359 (983)
Q Consensus 312 -P~Wne~f~f~~~--~~~~~~l~v~V~d~d~~~~d~~~d~~lG~~~i~l~~ 359 (983)
|+|||+|.|.+. .+....|.|+|||+|. ++++++||.|.+....
T Consensus 347 npv~nesf~F~vp~~~l~~~~l~l~V~d~d~----~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 347 NPVFNETFVFDVPPEQLAEVSLELTVWDHDT----LGSNDLIGRCILGSDS 393 (421)
T ss_pred CCcccccEEEeCCHHHhheeEEEEEEEEccc----ccccceeeEEEecCCC
Confidence 999999999765 6667789999999985 7889999999988774
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-21 Score=217.90 Aligned_cols=209 Identities=25% Similarity=0.319 Sum_probs=168.5
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECC---eEEEeeeeeeccCCCCCCCCcccceEEEEecCC--CCCcEE
Q 002002 427 WYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGA---QLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEP--FEPFLV 501 (983)
Q Consensus 427 ~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~---~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~--~~~~L~ 501 (983)
..|.|+|++|++|+.+ |..+.+||||++++.. .+.+|++.+ +++||.|||.|.|.+... ....|.
T Consensus 167 ~~L~V~V~qa~~Lp~~----d~~g~sdpyVK~~llPdk~~k~kT~v~r------~tlnP~fnEtf~f~v~~~~l~~~~L~ 236 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAK----DRGGTSDPYVKVYLLPDKKGKFKTRVHR------KTLNPVFNETFRFEVPYEELSNRVLH 236 (421)
T ss_pred CEEEEEEEEecCCCcc----cCCCCCCCeeEEEEcCCCCCcceeeeee------cCcCCccccceEeecCHHHhccCEEE
Confidence 4599999999999987 7667899999999953 568899885 599999999999986533 356899
Q ss_pred EEEEeCc---CCceeEEEEEecccccccccCCCCCcceEEeccCCCC--CCcceEEEEEEEEeccccccccccccCCchh
Q 002002 502 VTVEDVT---NGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDET--RPYAGRIHLRACLEGGYHVLDEAAHVTSDVR 576 (983)
Q Consensus 502 i~V~D~d---~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~l~l~i~l~g~~~v~~~~~~~~~d~~ 576 (983)
++|||.| ++++||++.++|..+... .....|.+|..... ....|+|.+.++..
T Consensus 237 l~V~~~drfsr~~~iGev~~~l~~~~~~-----~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~----------------- 294 (421)
T KOG1028|consen 237 LSVYDFDRFSRHDFIGEVILPLGEVDLL-----STTLFWKDLQPSSTDSEELAGELLLSLCYL----------------- 294 (421)
T ss_pred EEEEecCCcccccEEEEEEecCcccccc-----ccceeeeccccccCCcccccceEEEEEEee-----------------
Confidence 9999999 899999999999988753 23567999876421 22237888876532
Q ss_pred HHHHhhccCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C---EEEEeeeecCCCCCeeceEEEEEEec--
Q 002002 577 AAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P---KWVRTRTILDRFNPRWNEQYTWDVYD-- 649 (983)
Q Consensus 577 ~~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~---~~~rT~~~~~t~nP~Wne~~~~~v~~-- 649 (983)
+..|.|.|.|++|++|..+ +. .+.+||||.+.+- . .+.+|.+.++++||+|||.|.|.|..
T Consensus 295 --------p~~g~ltv~v~kar~L~~~---~~-~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~ 362 (421)
T KOG1028|consen 295 --------PTAGRLTVVVIKARNLKSM---DV-GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQ 362 (421)
T ss_pred --------cCCCeEEEEEEEecCCCcc---cC-CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHH
Confidence 3468999999999999776 55 7889999999863 2 56799999999999999999998853
Q ss_pred CC-CEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEccc
Q 002002 650 PC-TVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 650 ~~-~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~ 687 (983)
.. ..|.|+|||+|.++ ..++||.+.+....
T Consensus 363 l~~~~l~l~V~d~d~~~--------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 363 LAEVSLELTVWDHDTLG--------SNDLIGRCILGSDS 393 (421)
T ss_pred hheeEEEEEEEEccccc--------ccceeeEEEecCCC
Confidence 22 37999999999998 45599988876554
|
|
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=191.48 Aligned_cols=140 Identities=53% Similarity=0.934 Sum_probs=122.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECCeEEEeeeeeeccCCCCCCCCcccceEEEEecCCCCCcEEEEEEeC
Q 002002 428 YLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDV 507 (983)
Q Consensus 428 ~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D~ 507 (983)
+|+|+|++|++|+.+ +..+.+||||++.+|++..||+++.+ +++||.|||.|.|.+.++..+.|.|.|+|+
T Consensus 1 ~L~V~Vi~A~~L~~~----d~~g~sDPYV~v~l~~~~~kTk~~~~-----~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~ 71 (150)
T cd04019 1 YLRVTVIEAQDLVPS----DKNRVPEVFVKAQLGNQVLRTRPSQT-----RNGNPSWNEELMFVAAEPFEDHLILSVEDR 71 (150)
T ss_pred CEEEEEEEeECCCCC----CCCCCCCeEEEEEECCEEeeeEeccC-----CCCCCcccCcEEEEecCccCCeEEEEEEEe
Confidence 489999999999987 88899999999999999999998852 379999999999999888778999999998
Q ss_pred c---CCceeEEEEEecccccccccCCCCCcceEEeccCCCC-------CCcceEEEEEEEEeccccccccccccCCchhH
Q 002002 508 T---NGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDET-------RPYAGRIHLRACLEGGYHVLDEAAHVTSDVRA 577 (983)
Q Consensus 508 d---~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~-------~~~~G~l~l~i~l~g~~~v~~~~~~~~~d~~~ 577 (983)
+ ++++||++.++|.++....+.. ....+||+|.+..+ .+.+|+|+|+++|.|+|||++++++|++|++|
T Consensus 72 ~~~~~dd~lG~v~i~L~~l~~~~~~~-~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 72 VGPNKDEPLGRAVIPLNDIERRVDDR-PVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred cCCCCCCeEEEEEEEHHHCcccCCCC-ccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 8 6899999999999987543222 35789999987643 46679999999999999999999999999764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=183.94 Aligned_cols=125 Identities=64% Similarity=1.076 Sum_probs=107.6
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
.|+|+|++|+||+....+|. .|++||||++++|+++.||+++++++||+|||+|.|.+.++...|+|+|||++..+.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~-~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~-- 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDG-RGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHW-- 77 (126)
T ss_pred CeEEEEEEeECCcccccccc-CCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccc--
Confidence 38999999999433344577 899999999999999999999999999999999999999888899999999998620
Q ss_pred CCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEE
Q 002002 669 AGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEI 716 (983)
Q Consensus 669 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l 716 (983)
.+...+|++||++.++|+++..+..+.+||+|...++++.++.|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 001115789999999999999999999999999887778888899986
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-21 Score=214.18 Aligned_cols=244 Identities=19% Similarity=0.307 Sum_probs=192.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECC-eEEEeeeeeeccCCCCCCCCcccceEEEEecCCCCCcEEEEEEe
Q 002002 428 YLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGA-QLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVED 506 (983)
Q Consensus 428 ~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~-~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D 506 (983)
.|+|.|.||++|+.. +..|.+||||.+.+++ ++.||.++. +++.|.|.|+|.|.++..|. .|.|.|||
T Consensus 6 sl~vki~E~knL~~~----~~~g~~D~yC~v~lD~E~v~RT~tv~------ksL~PF~gEe~~~~iP~~F~-~l~fYv~D 74 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSY----GPSGMRDCYCTVNLDQEEVCRTATVE------KSLCPFFGEEFYFEIPRTFR-YLSFYVWD 74 (800)
T ss_pred ceeEEEeecccCCCC----CCCCCcCcceEEeecchhhhhhhhhh------hhcCCccccceEEecCccee-eEEEEEec
Confidence 489999999999987 8899999999999986 578999997 59999999999999987775 59999999
Q ss_pred Cc--CCceeEEEEEecccccccccCCCCCcceEEeccCCC-CCCcceEEEEEEEEeccccccccccccCCchhHHHHhhc
Q 002002 507 VT--NGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDE-TRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLA 583 (983)
Q Consensus 507 ~d--~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~G~l~l~i~l~g~~~v~~~~~~~~~d~~~~~~~l~ 583 (983)
+| +|+.||++.|.-.+|... +..+.||.|..-. .....|+|++++.+..... ..
T Consensus 75 ~d~~~D~~IGKvai~re~l~~~-----~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~-------~~----------- 131 (800)
T KOG2059|consen 75 RDLKRDDIIGKVAIKREDLHMY-----PGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ-------SS----------- 131 (800)
T ss_pred cccccccccceeeeeHHHHhhC-----CCCccceeccccCCChhhceeEEEEEEeccccC-------CC-----------
Confidence 99 999999999999998764 4678999997543 3678999999987764321 00
Q ss_pred cCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEE----EEeeeecCCCCCeeceEEEEEEecC---------
Q 002002 584 KSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW----VRTRTILDRFNPRWNEQYTWDVYDP--------- 650 (983)
Q Consensus 584 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~----~rT~~~~~t~nP~Wne~~~~~v~~~--------- 650 (983)
-+.-.++.++.+.|.. +|.+||||.+...+.+ .+|.+.++|.+|.|||.|.|.+...
T Consensus 132 -----~~~c~~L~~r~~~P~~-----~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~ 201 (800)
T KOG2059|consen 132 -----GLVCHVLKTRQGLPII-----NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLF 201 (800)
T ss_pred -----cchhhhhhhcccCcee-----CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhc
Confidence 0112234455555542 6779999999986644 4999999999999999999998543
Q ss_pred -------CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCc-----cceEEEEEE
Q 002002 651 -------CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAK-----KMGEIEIAV 718 (983)
Q Consensus 651 -------~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-----~~G~l~l~~ 718 (983)
--.|.+++||+.... .+++|+|++++++..+........||-|.... .|.+ .-|.+++.+
T Consensus 202 ~~~~e~~~l~irv~lW~~~~~~-------~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~-~g~~~~~~~~lGslrl~v 273 (800)
T KOG2059|consen 202 MPEEEDDMLEIRVDLWNDLNLV-------INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRP-NGEKSSDGGDLGSLRLNV 273 (800)
T ss_pred CcccCCceeeEEEeeccchhhh-------hhhhhceeEEeehhhhhhccCccceEEEecCC-CcccCCCCCCccceeeeE
Confidence 227899999955443 26889999999999987666678999888763 2211 248899999
Q ss_pred EEEec
Q 002002 719 RFTCS 723 (983)
Q Consensus 719 ~f~~~ 723 (983)
+|+.+
T Consensus 274 ~y~~D 278 (800)
T KOG2059|consen 274 TYTED 278 (800)
T ss_pred Eeeec
Confidence 99864
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=176.06 Aligned_cols=119 Identities=21% Similarity=0.337 Sum_probs=103.9
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecC-CCCCeeceEEEEEEecCCCEEEEEEEeCCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILD-RFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYK 665 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~-t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~ 665 (983)
.|.|+|+|++|++|+.. + .|++||||++.+|+..+||+++.+ +.||+|||+|.|++.+....|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~---~--~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNY---G--LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcC---C--CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc
Confidence 38999999999988432 3 689999999999999999999986 79999999999999876678999999999988
Q ss_pred CcCCCCCCCCceeEEEEEEcc-cccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 666 RDEAGKPGKDVRVGKIRVRLS-TLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
+|++||.+.|+|. .+..|+....||+|... +|.++.|.|+|.+.|
T Consensus 76 --------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 --------MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred --------CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 7889999999996 67888888999999864 344567999999876
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-20 Score=179.16 Aligned_cols=127 Identities=54% Similarity=0.982 Sum_probs=111.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
+|.|+|++|++|.+++..|.+||||++.+++++++|+++++++||.|||+|.|.+..+..+....|.|.|||.+..++++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 58999999999999999999999999999999999999999999999999999997654333568999999877764368
Q ss_pred CccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
+|||++.++++.+...+....+||+|++++..++.+|+|+|++.+++
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 99999999999988556778899999988766678999999998763
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-20 Score=208.19 Aligned_cols=238 Identities=21% Similarity=0.334 Sum_probs=183.4
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
...|.|.|.+|+||++++..|++||||.|.++. ...||.++.+++.|.|.|.|+|++.-. -..|.|.|||.| .+
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~----F~~l~fYv~D~d-~~ 78 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT----FRYLSFYVWDRD-LK 78 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc----eeeEEEEEeccc-cc
Confidence 457999999999999999999999999999987 789999999999999999999999765 789999999877 65
Q ss_pred CCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecCCCCCCCcccccccCCCCCCCcccCCCCCC
Q 002002 85 KRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVADKPPE 164 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (983)
+|+.||++.|.-.++.. ....+.|+.|..-...+.++|+|+|++.+......
T Consensus 79 -~D~~IGKvai~re~l~~-~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~-------------------------- 130 (800)
T KOG2059|consen 79 -RDDIIGKVAIKREDLHM-YPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQS-------------------------- 130 (800)
T ss_pred -cccccceeeeeHHHHhh-CCCCccceeccccCCChhhceeEEEEEEeccccCC--------------------------
Confidence 99999999999888873 34788999999999889999999999965421100
Q ss_pred cccccccccCCcccccCcccccCCCCCCCCCCCCCCCCCCCCchhhccCCCCCccCCCCCCCCCCCCccccccccccccc
Q 002002 165 KAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKT 244 (983)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 244 (983)
T Consensus 131 -------------------------------------------------------------------------------- 130 (800)
T KOG2059|consen 131 -------------------------------------------------------------------------------- 130 (800)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccccCCCCCCcccccCCcCEEEEEEEEeecC-C-CCCCCCcEEEEEEcCee----eeeeec--CC-Cccc
Q 002002 245 QELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRA-G-NVSNGSLYAKLVIGTHS----IKTKSQ--AD-KDWD 315 (983)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~V~v~~a~~L-~-~~~~~dPyv~v~~~~~~----~kTk~~--~~-P~Wn 315 (983)
.-+..++.++|++ + ..+.+|||+.++..|.. .+|+++ +. |.||
T Consensus 131 ----------------------------~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~ 182 (800)
T KOG2059|consen 131 ----------------------------SGLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFD 182 (800)
T ss_pred ----------------------------CcchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchh
Confidence 0001111222233 3 34669999999997753 478877 77 9999
Q ss_pred eEEEEeecCC---------------CCCeEEEEEEcCCcCCccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccC
Q 002002 316 QVFAFDKEGL---------------NSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESE 380 (983)
Q Consensus 316 e~f~f~~~~~---------------~~~~l~v~V~d~d~~~~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~ 380 (983)
|+|.|.+... ..-.|.|.+|+... -..+++|+|++.+++..+-....+ ..||.|...
T Consensus 183 Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~---~~~~~~FlGevrv~v~~~~~~s~p-----~~W~~Lqp~ 254 (800)
T KOG2059|consen 183 EVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLN---LVINDVFLGEVRVPVDVLRQKSSP-----AAWYYLQPR 254 (800)
T ss_pred hheeeeeccccccccchhcCcccCCceeeEEEeeccchh---hhhhhhhceeEEeehhhhhhccCc-----cceEEEecC
Confidence 9999987644 24468889999431 144799999999999877644442 479998633
Q ss_pred --------CCCCceEEEEEE
Q 002002 381 --------KLPGNDVMLAVW 392 (983)
Q Consensus 381 --------~~~~g~i~l~~~ 392 (983)
+..-|.+.+.+.
T Consensus 255 ~~g~~~~~~~~lGslrl~v~ 274 (800)
T KOG2059|consen 255 PNGEKSSDGGDLGSLRLNVT 274 (800)
T ss_pred CCcccCCCCCCccceeeeEE
Confidence 123466666664
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-20 Score=171.04 Aligned_cols=118 Identities=16% Similarity=0.271 Sum_probs=102.4
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCC-CCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFR-DLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
+.|.|+|++|++|+..+ .|++||||++.+++++++|+++.+ +.||+|||+|.|.+... ...|.|+|||++.++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~----~~~l~~~V~d~d~~~- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG----VDSIYIEIFDERAFT- 75 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC----CcEEEEEEEeCCCCc-
Confidence 68999999999887766 789999999999999999999876 79999999999999754 467999999988886
Q ss_pred CCCccEEEEEECcc-ceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 86 RSTFLGKVKIAGST-FAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 86 ~d~~lG~~~i~l~~-l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
+|++||++.+++.. +. .++..+.||+|.+..+. +..|+|+|.++|
T Consensus 76 ~dd~iG~~~i~l~~~~~-~g~~~~~W~~L~~~~~~-~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVF-NGETLDDWYSLSGKQGE-DKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhcc-CCCCccccEeCcCccCC-CCceEEEEEEeC
Confidence 89999999999974 55 56778999999876543 456999999976
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-20 Score=176.74 Aligned_cols=117 Identities=32% Similarity=0.555 Sum_probs=100.1
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCC
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRY 664 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~ 664 (983)
...|.|+|.|.+|.||... |. .++|||||++++|+++.||+++++++||+|||.|+|.+.+++.+|+++|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~r---D~-~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIR---DF-LGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeee---cc-ccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCC
Confidence 3689999999999999765 65 5999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIA 717 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~ 717 (983)
+ .|++||.+.|+|..+.+.. ..+| |....+.|.. .|++.++
T Consensus 79 s--------~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~-~~~v~~s 119 (168)
T KOG1030|consen 79 S--------SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTA-IGKVLLS 119 (168)
T ss_pred C--------cccccceeeeccHHHHHHh--hhhc-cccccCCCcE-eeEEEec
Confidence 8 7889999999999988766 4455 5555455533 3555443
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-19 Score=204.66 Aligned_cols=578 Identities=17% Similarity=0.187 Sum_probs=326.9
Q ss_pred cCCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeee---cCC---CCCceEEEE
Q 002002 3 ESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHD---AES---MPTEILEIN 76 (983)
Q Consensus 3 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~---~~~---l~~~~L~v~ 76 (983)
|+..+.+++.|.+|+.|.+.|..+-+|||+.+.+.++.+.|-++.+|+||.|+++..|.-.. ... -.-..+.++
T Consensus 202 e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 202 EVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 34567788999999999999999999999999999999999999999999999999885321 100 023567899
Q ss_pred EEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecCCCCCCCcccccccCCCCCCCc
Q 002002 77 LYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEA 156 (983)
Q Consensus 77 V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (983)
|||.++.+ .++|+|+......-... .....|+++...+. ..|++.+....+....
T Consensus 282 ~yd~dr~g-~~ef~gr~~~~p~V~~~--~p~lkw~p~~rg~~---l~gd~l~a~eliq~~~------------------- 336 (1105)
T KOG1326|consen 282 VYDLDRSG-INEFKGRKKQRPYVMVQ--CPALKWVPTMRGAF---LDGDVLIAAELIQIGK------------------- 336 (1105)
T ss_pred eehhhhhc-hHHhhcccccceEEEec--CCccceEEeecccc---cccchhHHHHHHhhcC-------------------
Confidence 99888876 89999998766444331 45667888765432 2244332221110000
Q ss_pred ccCCCCCCcccccccccCCcccccCcccccCCCCCCCCCCCCCCCCCCCCchhhccCCCCCccCCCCCCCCCCCCccccc
Q 002002 157 AVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDK 236 (983)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 236 (983)
+ ... +++.. +++ ..
T Consensus 337 -------------------------------------~--i~~----------------p~~~~-~~~----------~~ 350 (1105)
T KOG1326|consen 337 -------------------------------------P--IPQ----------------PPPQR-EII----------FS 350 (1105)
T ss_pred -------------------------------------C--CCC----------------CCccc-ccc----------ee
Confidence 0 000 00000 000 00
Q ss_pred cccccccccccccCccccccccCCCCCCcccccCCcCEEEEEEEEeecCC---CCCCCCcEEEEEEcCeeeeeeec-CC-
Q 002002 237 ATVTETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAG---NVSNGSLYAKLVIGTHSIKTKSQ-AD- 311 (983)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~V~v~~a~~L~---~~~~~dPyv~v~~~~~~~kTk~~-~~- 311 (983)
+ .+...+ +.. +.+.+.|-..--|++. ......|-+-+.+|++...|-.+ +.
T Consensus 351 ~----------vp~~iR-----p~~---------q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k 406 (1105)
T KOG1326|consen 351 L----------VPKKIR-----PKT---------QIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRK 406 (1105)
T ss_pred c----------cccCCC-----cce---------eeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhh
Confidence 0 000000 000 0012222222223332 23467899999999999988888 44
Q ss_pred --CccceEEEEee-----cCCCCCeEEEEEEcCCcCCccccCCceeEEEEEecc-ccCCCCCCC----CCC---------
Q 002002 312 --KDWDQVFAFDK-----EGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQ-EVPKRVPPD----SPL--------- 370 (983)
Q Consensus 312 --P~Wne~f~f~~-----~~~~~~~l~v~V~d~d~~~~d~~~d~~lG~~~i~l~-~l~~~~~~~----~~l--------- 370 (983)
|.++..|.+-. ..++..++.++|+|.+. ++.-..+|.|.+.-- ....+.... ..+
T Consensus 407 ~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~----fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~ 482 (1105)
T KOG1326|consen 407 KNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQ----FGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMM 482 (1105)
T ss_pred hCCCCceeEEEEEEeccchHhhCccceeEEEeccc----ccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhc
Confidence 88888777653 23457789999999874 889999999987532 211110000 000
Q ss_pred ----------CCceEEcccC-----------C--------C-------CCceEEEEEEeccCcch---hhh--hhcccC-
Q 002002 371 ----------APQWYSLESE-----------K--------L-------PGNDVMLAVWIGTQADE---AFQ--EAWQSD- 408 (983)
Q Consensus 371 ----------~~~w~~L~~~-----------~--------~-------~~g~i~l~~~~g~~~de---~~~--~~~~s~- 408 (983)
...|+..... + . .+....+.++ ...+| +|. +.|..+
T Consensus 483 ~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiy--n~ele~v~ef~~l~D~~~~f 560 (1105)
T KOG1326|consen 483 GSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIY--NMELEMVAEFRGLQDWAVTF 560 (1105)
T ss_pred CCchhhhhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEe--hhhhhhHHHHhhhhhcccee
Confidence 0011111100 0 0 0111122221 11111 110 111000
Q ss_pred ----------CCC-------------C-Cc-------ccc-cccc--cCCceEEEEEEEEEeeCCCCCCCCCCCCCCCCc
Q 002002 409 ----------SGG-------------L-IP-------ETR-AKVY--LSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPEL 454 (983)
Q Consensus 409 ----------~~~-------------~-~~-------~~~-~~~~--~~p~l~~L~V~Viea~~L~~~~~~~d~~~~sdp 454 (983)
..+ + +. ..+ ...+ ..|....+||.|++|.+|.+. |.+|++||
T Consensus 561 ~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~----D~ng~adp 636 (1105)
T KOG1326|consen 561 KLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS----DGNGDADP 636 (1105)
T ss_pred EeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc----CCCCCcCc
Confidence 000 0 00 000 0000 025666799999999999998 99999999
Q ss_pred EEEEEECCeEEEeeeeeeccCCCCCCCCcccceEEEEecCCCCCcEEEEEEeCc---CCceeEEEEEeccc-cccccc-C
Q 002002 455 YVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVT---NGCSVGHARIQMST-VERRID-D 529 (983)
Q Consensus 455 yv~v~lg~~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D~d---~d~~lG~~~i~L~~-l~~~~~-~ 529 (983)
||++.+|++....+.... .+++||+|++.|.+....|++..|.+.|||+| .|+.||+..++|.. ...... +
T Consensus 637 Yv~l~lGk~~~~d~~~yi----p~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR~~T~~~a~ 712 (1105)
T KOG1326|consen 637 YVKLLLGKKRTLDRAHYI----PNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENRWLTRHRAR 712 (1105)
T ss_pred eeeeeeccchhhhhhhcC----cCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhcccCcCCcc
Confidence 999999987754333221 37999999999999999999999999999999 79999999999975 221111 1
Q ss_pred CC-------CCcceEEecc----------CCCC---CCcceEEEEEEEEeccccccc-----------------------
Q 002002 530 RA-------EPKSRWFNLV----------GDET---RPYAGRIHLRACLEGGYHVLD----------------------- 566 (983)
Q Consensus 530 ~~-------~~~~~w~~L~----------~~~~---~~~~G~l~l~i~l~g~~~v~~----------------------- 566 (983)
++ .....|..-. .+.+ --+.+.. ..+.+.|.....|
T Consensus 713 cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i 791 (1105)
T KOG1326|consen 713 CGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWI 791 (1105)
T ss_pred cCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhcccccCCCCCcccchHHHHHHHHh
Confidence 10 1223343311 1111 0001111 1222222100000
Q ss_pred --------cc---cccCCchhHHHH----hhcc------------------CCcEEEEEEEceeccccccccCCCCCC--
Q 002002 567 --------EA---AHVTSDVRAAAK----QLAK------------------SPIGLLEVGIRGATNLLPVKTKDGTRG-- 611 (983)
Q Consensus 567 --------~~---~~~~~d~~~~~~----~l~~------------------~~~g~L~v~v~~a~~L~~~~~~d~~~g-- 611 (983)
+. -...++..|..+ ++|. +..-.|+|.|-.-.+...-+. ++ .|
T Consensus 792 ~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrviiWnt~~v~l~dd-~~-~ge~ 869 (1105)
T KOG1326|consen 792 LMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVIIWNTDKVRLNDD-EI-TGEK 869 (1105)
T ss_pred hhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEEEeeccceeecCc-cc-eeee
Confidence 00 000111112211 1221 234567777766666643221 22 22
Q ss_pred CCCcEEEEEEC-C--EEEEeeeecCCC----CCeeceEEEEEEe-----------------c-----CCCEEEEEEEeCC
Q 002002 612 TTDAYVVAKYG-P--KWVRTRTILDRF----NPRWNEQYTWDVY-----------------D-----PCTVLTIGVFDNG 662 (983)
Q Consensus 612 ~sDpy~~~~~~-~--~~~rT~~~~~t~----nP~Wne~~~~~v~-----------------~-----~~~~l~i~v~D~d 662 (983)
.||-|+.=.+- . ++.+|.+.+.++ |=.|.-.|-|... + .-..|.|+|||+|
T Consensus 870 ~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d 949 (1105)
T KOG1326|consen 870 MSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLDETEFKIPARLIIQIWDND 949 (1105)
T ss_pred ccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccccccccccCchheEEEecccC
Confidence 57889876653 3 566777777665 4555444433220 0 0125999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCC----------------------CeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDTN----------------------RVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~----------------------~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
.++ +|++||...++|+++..+ +....|||+.........-+|.+++++..
T Consensus 950 ~fs--------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 950 KFS--------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred ccC--------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcceecceeeeehhh
Confidence 998 899999999999886432 24568999988743333347888888744
|
|
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-19 Score=169.71 Aligned_cols=117 Identities=25% Similarity=0.370 Sum_probs=101.2
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEec------CCCEEEEEEEeCCC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYD------PCTVLTIGVFDNGR 663 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~------~~~~l~i~v~D~d~ 663 (983)
++|+|++|+||+++ |. .|.+||||++++++...||+++++++||+|||.|.|.+.. ....|.|.|||++.
T Consensus 1 ~~V~V~~A~~L~~~---d~-~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCK---GK-SGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCC---CC-CcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 47999999999765 55 7899999999999999999999999999999999999976 35689999999998
Q ss_pred CCCcCCCCCCCCceeEEEEEEccccc--CCCeEEEEEEeeecCCCCCccceEEEEEE
Q 002002 664 YKRDEAGKPGKDVRVGKIRVRLSTLD--TNRVYLNSYSLTVLLPGGAKKMGEIEIAV 718 (983)
Q Consensus 664 ~~~~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~l~l~~ 718 (983)
++ +|++||++.|+|+++. .+.....||+|........+..|+|++.+
T Consensus 77 ~~--------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 77 LG--------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred cC--------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 87 6889999999999987 56677899999865433334579999986
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-19 Score=169.26 Aligned_cols=121 Identities=25% Similarity=0.428 Sum_probs=103.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeec--CCCCCceEEEEEEeCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDA--ESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~l~~~~L~v~V~~~~~~~~~ 86 (983)
|+|+|++|+||+.++..|.+||||+|.+++++++|+++++++||+|||+|.|.+... ++.....|.|.|||.+.++ +
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~-~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG-L 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC-C
Confidence 579999999999999999999999999999999999999999999999999998662 1123678999999988776 7
Q ss_pred CCccEEEEEECcccee-cCCeeeEEEEceecCC-cceeeeEEEEEE
Q 002002 87 STFLGKVKIAGSTFAK-VGSESSVYYPLEKRSV-FSQIKGEIGLKV 130 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~-~~~~~~~w~~L~~~~~-~s~~~G~l~l~i 130 (983)
|++||++.+++.++.. .+.....||+|.+... ..+..|+|+|++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 9999999999999872 4566789999986543 334689999986
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-19 Score=165.07 Aligned_cols=116 Identities=27% Similarity=0.457 Sum_probs=99.9
Q ss_pred EEEEEEEEeeC---CCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 8 KLIVEVCNAKN---LMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 8 ~L~V~v~~a~~---L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
.|+|+|++|++ |..+|..|++||||++++++++.||+++++++||+|||+|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~----~~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP----CTVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC----CCEEEEEEEECCCcc
Confidence 38999999999 88999999999999999999999999999999999999999999775 468999999987752
Q ss_pred -----CCCCccEEEEEECccceecCCeeeEEEEceecCCcc-eeeeEEEE
Q 002002 85 -----KRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS-QIKGEIGL 128 (983)
Q Consensus 85 -----~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s-~~~G~l~l 128 (983)
++|++||++.++++.+. .+.....||+|....... +..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLE-DDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHcc-CCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 37999999999999987 567788999998664322 34577764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=171.95 Aligned_cols=125 Identities=23% Similarity=0.252 Sum_probs=108.4
Q ss_pred cEEEEEEEceeccccccccC---------------------------CCCCCCCCcEEEEEECCE-EEEeeeecCCCCCe
Q 002002 587 IGLLEVGIRGATNLLPVKTK---------------------------DGTRGTTDAYVVAKYGPK-WVRTRTILDRFNPR 638 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~---------------------------d~~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~ 638 (983)
-|.|.|+|++|++|+.||.. .. .|++||||++.+++. ..||++++++.||+
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVG-KITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCC-CCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 48999999999999988621 23 688999999999975 46999999999999
Q ss_pred eceEEEEEEecCCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEE
Q 002002 639 WNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAV 718 (983)
Q Consensus 639 Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~ 718 (983)
|||.|.|.+.++.+.|.|.|||++..+ +++||++.|+++++..+.....||+|.....++.+..|.|++.+
T Consensus 85 WnE~F~~~~~~~~~~l~~~V~d~d~~~---------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~ 155 (158)
T cd04015 85 WNESFHIYCAHYASHVEFTVKDNDVVG---------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSL 155 (158)
T ss_pred cceEEEEEccCCCCEEEEEEEeCCCcC---------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEE
Confidence 999999999888889999999999876 35999999999999988888999999876555555578999999
Q ss_pred EEE
Q 002002 719 RFT 721 (983)
Q Consensus 719 ~f~ 721 (983)
+|+
T Consensus 156 ~f~ 158 (158)
T cd04015 156 QFT 158 (158)
T ss_pred EEC
Confidence 984
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=164.02 Aligned_cols=118 Identities=33% Similarity=0.467 Sum_probs=105.3
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
|+|+|++|+||+.+ |. .|++||||++++++ ...+|+++.+++||.|||.|.|.+.++...|.|+|||++..+
T Consensus 2 L~v~v~~a~~L~~~---d~-~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 2 LDIHLKEGRNLAAR---DR-GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred eEEEEEEeeCCCCc---CC-CCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 78999999999765 55 78999999999987 678999999999999999999999888889999999999987
Q ss_pred CCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 669 AGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 669 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+|++||++.+++.++..+.....|++|.... +.+..|+|++.++|+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 -----TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLT 120 (121)
T ss_pred -----CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEEC
Confidence 6889999999999999888889999997643 235689999999985
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=161.89 Aligned_cols=119 Identities=18% Similarity=0.342 Sum_probs=103.0
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
|.|+|++|+||++++ +. .|.+||||.+++++. ..+|+++++|+||.|||+|.|.+.+....|.|.|||++..+
T Consensus 2 l~v~v~~a~~L~~~~--~~-~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~--- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GP-NKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR--- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CC-CCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC---
Confidence 679999999998763 23 678999999999864 67999999999999999999999876679999999999987
Q ss_pred CCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 669 AGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 669 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
+|++||++.++++++..+.....||+|......+ +..|+|+++++|
T Consensus 76 -----~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~ 121 (121)
T cd08401 76 -----RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS-EVQGKVHLELRL 121 (121)
T ss_pred -----CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCC-cccEEEEEEEEC
Confidence 7889999999999998888789999998654433 347999999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-18 Score=160.50 Aligned_cols=119 Identities=27% Similarity=0.466 Sum_probs=105.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
+|.|+|++|++|+.+|..|.+||||++.+++ ..++|+++.+++||.|||+|.|.+... ...|.|+|||.+..+ +
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~----~~~l~~~v~D~d~~~-~ 75 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV----TQPLYIKVFDYDRGL-T 75 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC----CCeEEEEEEeCCCCC-C
Confidence 4899999999999999999999999999988 788999999999999999999998654 578999999988876 8
Q ss_pred CCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 87 STFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
+++||++.+++.++. .+.....|++|.+.+. .+..|+|++.+.+.
T Consensus 76 ~~~iG~~~~~l~~l~-~~~~~~~~~~L~~~~~-~~~~G~l~l~~~~~ 120 (121)
T cd04042 76 DDFMGSAFVDLSTLE-LNKPTEVKLKLEDPNS-DEDLGYISLVVTLT 120 (121)
T ss_pred CcceEEEEEEHHHcC-CCCCeEEEEECCCCCC-ccCceEEEEEEEEC
Confidence 999999999999988 5567888999987654 24679999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-18 Score=160.36 Aligned_cols=116 Identities=50% Similarity=0.907 Sum_probs=103.5
Q ss_pred EEEEEEEEeecCCCCCCCCcEEEEEEcCeeeeeeec--CC-CccceEEEEeecCCCCCeEEEEEEcCCcCCccccCCcee
Q 002002 274 FLYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQ--AD-KDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCL 350 (983)
Q Consensus 274 ~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kTk~~--~~-P~Wne~f~f~~~~~~~~~l~v~V~d~d~~~~d~~~d~~l 350 (983)
||.|+|++|++|+.. .+||||++.+++++.+|+++ +. |+|||+|.|.+..+....|.++|||++. .++++|
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~-----~~~~~l 74 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK-----AKDDFL 74 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-----CcCcee
Confidence 689999999999866 89999999999999999998 77 9999999999988778899999999873 389999
Q ss_pred EEEEEeccccCCCCCCCCCCCCceEEcccCC--CCCceEEEEEEecc
Q 002002 351 GTVLFDLQEVPKRVPPDSPLAPQWYSLESEK--LPGNDVMLAVWIGT 395 (983)
Q Consensus 351 G~~~i~l~~l~~~~~~~~~l~~~w~~L~~~~--~~~g~i~l~~~~g~ 395 (983)
|.+.++|+++..+.+.+....++||.|.+.. +.+|+|++++|+|+
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~~ 121 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFGT 121 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEecC
Confidence 9999999999877666666678999998873 68899999999985
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=160.26 Aligned_cols=117 Identities=25% Similarity=0.399 Sum_probs=102.2
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKD-GQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 9 L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
|.|+|.+|+||++++ ..|.+||||.|.+++ ..++|+++++|+||.|||+|.|.+... ...|.|.|||.+.++ +
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~----~~~l~~~v~d~~~~~-~ 76 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT----FRHLSFYIYDRDVLR-R 76 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC----CCEEEEEEEECCCCC-C
Confidence 789999999999974 467899999999987 468999999999999999999999754 478999999988886 8
Q ss_pred CCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEE
Q 002002 87 STFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVY 131 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~ 131 (983)
+++||++.++++++. .+...+.||+|++....++..|+|++.+.
T Consensus 77 ~~~iG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 77 DSVIGKVAIKKEDLH-KYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred CceEEEEEEEHHHcc-CCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 999999999999987 45667899999987655567899999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-18 Score=157.00 Aligned_cols=100 Identities=26% Similarity=0.416 Sum_probs=89.9
Q ss_pred cCEEEEEEEEeecCCCCCCCCcEEEEEEcCeeeeeeec-CC-CccceEEEEeecCCCCCeEEEEEEcCCcCCccccCCce
Q 002002 272 MPFLYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQ-AD-KDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENC 349 (983)
Q Consensus 272 ~~~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kTk~~-~~-P~Wne~f~f~~~~~~~~~l~v~V~d~d~~~~d~~~d~~ 349 (983)
|++|+|+|++||+|...+..||||++++|+++.+|++. +. |.|||.|.|.+.+. ...|.|+|||+| +..||+
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~~nP~WnE~F~F~~~~~-~~~L~v~V~dkd-----~~~DD~ 74 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRGSQPCWEQDFMFEINRL-DLGLVIELWNKG-----LIWDTL 74 (127)
T ss_pred CceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCCCCCceeeEEEEEEcCC-CCEEEEEEEeCC-----CcCCCc
Confidence 67999999999999877888999999999999999999 77 99999999999887 445999999986 569999
Q ss_pred eEEEEEeccccCCCCCCCCCCCCceEEcccC
Q 002002 350 LGTVLFDLQEVPKRVPPDSPLAPQWYSLESE 380 (983)
Q Consensus 350 lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~ 380 (983)
||++.|+|+++..+ +.+++++||+|+..
T Consensus 75 lG~v~i~L~~v~~~---~~~~~~~Wy~L~~~ 102 (127)
T cd08394 75 VGTVWIPLSTIRQS---NEEGPGEWLTLDSE 102 (127)
T ss_pred eEEEEEEhHHcccC---CCCCCCccEecChH
Confidence 99999999999876 45788999999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.7e-18 Score=163.80 Aligned_cols=123 Identities=21% Similarity=0.330 Sum_probs=105.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCC-CCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFR-DLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
.|.|+|++|++|+++|..|.+||||++.+++++++|+++.+ ++||.|||+|.|.+..+. ...|.|.||+.+..+ +
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~---~~~l~v~V~d~~~~~-~ 76 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF---EDHLILSVEDRVGPN-K 76 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCcc---CCeEEEEEEEecCCC-C
Confidence 38999999999999999999999999999999999999977 699999999999997642 468999999877765 7
Q ss_pred CCccEEEEEECcccee---cCCeeeEEEEceecCC------cceeeeEEEEEEEEec
Q 002002 87 STFLGKVKIAGSTFAK---VGSESSVYYPLEKRSV------FSQIKGEIGLKVYYID 134 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~---~~~~~~~w~~L~~~~~------~s~~~G~l~l~i~~~~ 134 (983)
|++||++.++++.+.. .+....+||+|.+.++ ..+..|+|+|++.+..
T Consensus 77 dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 77 DEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 8999999999999863 2345689999998753 1246799999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=159.16 Aligned_cols=120 Identities=22% Similarity=0.291 Sum_probs=103.0
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC--EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCc
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP--KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~--~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~ 667 (983)
|.|+|++|+||+. . .|++||||++.+++ ...||+++++++||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~-~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~-- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----A-AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS-- 72 (126)
T ss_pred CEEEEEEecCCCC-----C-CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC--
Confidence 5789999999964 3 78999999999974 678999999999999999999999765679999999999987
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
+|++||++.+++.++..+.....||+|......+.+..|+|++++.|...
T Consensus 73 ------~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 ------DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred ------CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 68899999999999998777789999985533234557999999999743
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=157.52 Aligned_cols=119 Identities=24% Similarity=0.406 Sum_probs=101.5
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecCC-CEEEEEEEeCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIGVFDNGRY 664 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~v~D~d~~ 664 (983)
...|+|+|++|+||++ .+.+||||.+.+++ +..||++ ++++||.|||.|.|.+..+. ..++|.|||++..
T Consensus 3 ~~~L~V~Vi~A~~L~~-------~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~ 74 (126)
T cd08400 3 VRSLQLNVLEAHKLPV-------KHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKR 74 (126)
T ss_pred eeEEEEEEEEeeCCCC-------CCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCC
Confidence 3479999999999964 34689999999987 4578987 56899999999999976554 5799999999988
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+ +|++||++.|+|.++..+.....||+|......+.+..|+|+|.++|.
T Consensus 75 ~--------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 75 S--------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred C--------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 7 788999999999999999888999999876544455679999999996
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-18 Score=157.20 Aligned_cols=107 Identities=21% Similarity=0.335 Sum_probs=91.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-------eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-------QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
+|.|+|++|++|+.++ .|.+||||+|++.+ ++++|+++.+++||+|||+|.|.+.....+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 5899999999999988 49999999999832 467899999999999999999999864344567899999987
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
+..+ ++++||++.+++.++. .+.....|++|+++.
T Consensus 80 d~~~-~dd~IG~~~l~l~~~~-~~~~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFAR-DDRLVGVTVLQLRDIA-QAGSCACWLPLGRRI 114 (120)
T ss_pred cccC-CCCEEEEEEEEHHHCc-CCCcEEEEEECcCcc
Confidence 7554 7999999999999998 445688999998764
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=155.45 Aligned_cols=115 Identities=25% Similarity=0.473 Sum_probs=103.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
.|+|+|++|++|+.++..|.+||||++.+++++++|+++++++||.|||+|.|.+.... ...|.|+|||.+..+ ++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~v~v~d~~~~~-~~ 76 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQ---SQILEIEVWDKDTGK-KD 76 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCC---CCEEEEEEEECCCCC-CC
Confidence 47899999999999998899999999999999999999999999999999999987642 578999999988775 89
Q ss_pred CccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
++||++.++++++. .+.....|++|++. .|+|++.+.|+
T Consensus 77 ~~iG~~~~~l~~l~-~~~~~~~w~~L~~~------~G~~~~~~~~~ 115 (116)
T cd08376 77 EFIGRCEIDLSALP-REQTHSLELELEDG------EGSLLLLLTLT 115 (116)
T ss_pred CeEEEEEEeHHHCC-CCCceEEEEEccCC------CcEEEEEEEec
Confidence 99999999999987 55678899999864 49999998875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=156.40 Aligned_cols=118 Identities=26% Similarity=0.434 Sum_probs=103.6
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCc
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~ 667 (983)
|.|+|+|++|+||+.+ +. .+.+||||++++++...+|++++++.||.|||+|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~-~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~-- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DI-GGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK-- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CC-CCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC--
Confidence 7899999999999765 55 78899999999999889999999999999999999999877789999999999876
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
+|++||++.+++.++..+. ..||+|......+ +..|+|.+++.|
T Consensus 75 ------~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 75 ------KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred ------CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 6789999999999998776 6899998653333 457999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-18 Score=160.94 Aligned_cols=92 Identities=28% Similarity=0.551 Sum_probs=87.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
..+.|+|+|++|.+|..+|..+++||||++.+++|+.+|+++++++||+|||.|+|.+.++ ...|++.|||.|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~----~~~lkv~VyD~D~fs 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP----NTPLKVTVYDKDTFS 79 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC----CceEEEEEEeCCCCC
Confidence 3578999999999999999889999999999999999999999999999999999999998 789999999999887
Q ss_pred CCCCccEEEEEECccce
Q 002002 85 KRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~ 101 (983)
+|||||.+.|++..+.
T Consensus 80 -~dD~mG~A~I~l~p~~ 95 (168)
T KOG1030|consen 80 -SDDFMGEATIPLKPLL 95 (168)
T ss_pred -cccccceeeeccHHHH
Confidence 9999999999999988
|
|
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=158.79 Aligned_cols=121 Identities=30% Similarity=0.481 Sum_probs=102.5
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCC----CEEEEEEEeCCCC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPC----TVLTIGVFDNGRY 664 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~----~~l~i~v~D~d~~ 664 (983)
.|.|+|++|++|++. |. .|.+||||++.+++...||+++.+++||.|||.|.|.+.++. ..|.|+|||++..
T Consensus 1 ~L~V~vi~A~~L~~~---d~-~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPK---DG-QGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCC---CC-CCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence 378999999999765 55 788999999999999999999999999999999999997643 4799999999876
Q ss_pred CCcCCCCCCCCceeEEEEEEccccc-CCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLD-TNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+ ..|++||++.++++++. .+.....||+|......+ +.+|+|+|++.||
T Consensus 77 ~-------~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~ 126 (127)
T cd04022 77 G-------RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYIT 126 (127)
T ss_pred c-------CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEEc
Confidence 4 14779999999999987 566678999998653333 4579999999886
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=158.57 Aligned_cols=119 Identities=27% Similarity=0.428 Sum_probs=100.7
Q ss_pred cCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCC-CEEEEEEEeCC
Q 002002 584 KSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIGVFDNG 662 (983)
Q Consensus 584 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~v~D~d 662 (983)
...+|.|.|+|++|+||+.+ |. .|.+||||++.+++...||+++++++||.|||.|.|.+.++. ..|.|+|||++
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~-~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NS-NGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CC-CCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 46789999999999999765 55 789999999999999999999999999999999999998754 58999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccC-----CCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDT-----NRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
..+ +|++||++.++|.++.. ...+..|.+| ++ +..|+|+|++.|
T Consensus 87 ~~~--------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~-----~~-~~~g~i~l~~~~ 135 (136)
T cd08375 87 FFS--------PDDFLGRTEIRVADILKETKESKGPITKRLLL-----HE-VPTGEVVVKLDL 135 (136)
T ss_pred CCC--------CCCeeEEEEEEHHHhccccccCCCcEEEEecc-----cc-ccceeEEEEEEe
Confidence 887 78899999999999875 2234444444 23 346999999876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=160.15 Aligned_cols=121 Identities=28% Similarity=0.429 Sum_probs=104.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCe-------EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ-------RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
.|.|+|++|++|+.+|..|.+||||++.+.+. .++|+++++++||.|||+|.|.+... ...|.|+|||.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR----EHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC----CCEEEEEEEEC
Confidence 38999999999999998999999999999764 57999999999999999999998654 46799999988
Q ss_pred CCCCCCCCccEEEEEECccceecC-----CeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVG-----SESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~-----~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
+..+ ++++||++.+++.++.... .....||+|+++...++.+|+|++++.|.
T Consensus 77 ~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 77 NRLT-RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCC-CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 8776 8999999999999987332 23569999998766667899999999873
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=156.72 Aligned_cols=114 Identities=25% Similarity=0.439 Sum_probs=99.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRST 88 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~ 88 (983)
|.|+|++|+||+.+ .+||||++.+++++.+|+++++++||.|||+|.|.+..+ ....|.|.|||++.. +++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~---~~~~L~~~v~d~d~~--~~~ 72 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL---QGSTLEVSVWDKDKA--KDD 72 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC---cCCEEEEEEEeCCCC--cCc
Confidence 89999999999987 789999999999999999999999999999999998653 268899999988765 789
Q ss_pred ccEEEEEECccceec----CCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 89 FLGKVKIAGSTFAKV----GSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 89 ~lG~~~i~l~~l~~~----~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
+||++.++++.+... +.....||+|+.... ++.+|+|+|.+.|
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~ 119 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWF 119 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEe
Confidence 999999999998632 233579999998865 6788999999976
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=157.08 Aligned_cols=119 Identities=23% Similarity=0.457 Sum_probs=102.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECC--eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDG--QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
|.|+|++|+||+. ..|.+||||++++++ ++++|+++++++||.|||+|.|.+... ...|.|+|||.+..+ +
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~~~~~-~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN----SKELLFEVYDNGKKS-D 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC----CCEEEEEEEECCCCC-C
Confidence 6899999999987 678999999999974 678999999999999999999998643 578999999988876 8
Q ss_pred CCccEEEEEECccceecCCeeeEEEEceecCC-cceeeeEEEEEEEEecC
Q 002002 87 STFLGKVKIAGSTFAKVGSESSVYYPLEKRSV-FSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~-~s~~~G~l~l~i~~~~~ 135 (983)
++|||++.+++..+. .+.....||+|.++.. .....|+|.+++.|.+.
T Consensus 74 ~~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 74 SKFLGLAIVPFDELR-KNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred CceEEEEEEeHHHhc-cCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999999988 4455678999987643 23578999999999854
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-17 Score=154.26 Aligned_cols=114 Identities=25% Similarity=0.450 Sum_probs=101.9
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCCCc
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~~~ 667 (983)
+|+|+|++|+||+.+ |. .|.+||||.+++++...+|+++.+|+||.|||.|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~~~V~v~~a~~L~~~---~~-~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~-- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPM---DD-NGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK-- 74 (116)
T ss_pred CEEEEEEEEECCCCC---CC-CCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC--
Confidence 378999999999765 55 78999999999999999999999999999999999999876 579999999999887
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+|++||++.++|+++..+.....||+|... .|+|++.+.|+
T Consensus 75 ------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 75 ------KDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred ------CCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 788999999999999988888999998732 49999998875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=156.30 Aligned_cols=117 Identities=28% Similarity=0.547 Sum_probs=101.1
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCC-CCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFR-DLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
+.|.|+|++|++|+..+..|.+||||++++++++++|+++.+ ++||.|||+|.|.+..+. ...|.|+|||.+..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK---KPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCC---CCEEEEEEEeCCCC--
Confidence 479999999999999999999999999999999999998764 799999999999997642 57899999987665
Q ss_pred CCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 86 RSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
.+++||++.+++.++.. +.....||+|.+.+ +..|+|+++++|
T Consensus 76 ~~~~iG~~~~~l~~~~~-~~~~~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 76 KPDLIGDTEVDLSPALK-EGEFDDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred CCcceEEEEEecHHHhh-cCCCCCcEEeccCC---cEeeEEEEEEEC
Confidence 48999999999999873 44578999998654 457999999875
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-17 Score=155.36 Aligned_cols=118 Identities=24% Similarity=0.402 Sum_probs=102.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECCe-EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ-RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
|.|+|++|++|.++|..|.+||||++.+++. .++|+++++++||.|||.|.|.+... ...|.|.|||.+..+ +|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~----~~~l~v~v~d~~~~~-~d 76 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG----FHTVSFYVLDEDTLS-RD 76 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC----CCEEEEEEEECCCCC-CC
Confidence 8999999999999999999999999999874 57999999999999999999998654 578999999888876 89
Q ss_pred CccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEE
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVY 131 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~ 131 (983)
++||++.++++.+...+...+.|++|++........|+|++.+.
T Consensus 77 ~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 77 DVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999998887434457899999876544457899998874
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-17 Score=154.68 Aligned_cols=121 Identities=26% Similarity=0.424 Sum_probs=104.3
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
...|+|+|++|++|...+..|.+||||++.++++.++|++++++.||.|||.|.|.+.+. ...|.|+|||.+..
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~i~V~d~~~~-- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP----RSPIKIQVWNSNLL-- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC----CCEEEEEEEECCCC--
Confidence 468999999999999999899999999999999999999999999999999999988765 67899999987765
Q ss_pred CCCccEEEEEECccceecCCeeeEEEEceecC--CcceeeeEEEEEEEEecC
Q 002002 86 RSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS--VFSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~--~~s~~~G~l~l~i~~~~~ 135 (983)
+|++||++.+++..+. .....|++|.++. ...++.|+|.+++.+.++
T Consensus 76 ~d~~lG~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 76 CDEFLGQATLSADPND---SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCCceEEEEEecccCC---CcCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 5899999999998754 4556788986543 445688999999988754
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=156.51 Aligned_cols=116 Identities=27% Similarity=0.426 Sum_probs=99.6
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecC-CCCCeeceEEEEEEecC-CCEEEEEEEeCCCCC
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILD-RFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYK 665 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~-t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~ 665 (983)
|.|+|+|++|++|+.. |. .|++||||++.+++...+|+++.+ ++||.|||.|.|.+..+ ...|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~---~~-~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~ 76 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RK-LDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK 76 (118)
T ss_pred CEEEEEEEEccCCCCC---Cc-CCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC
Confidence 6899999999999665 56 789999999999999999999865 78999999999999864 468999999998753
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
|++||++.+++.++..+....+||+|... | +..|+|++++.|
T Consensus 77 ---------~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 77 ---------PDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred ---------CcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 67999999999998777667899999742 3 457999999876
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=155.63 Aligned_cols=116 Identities=33% Similarity=0.620 Sum_probs=102.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC----
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT---- 83 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~---- 83 (983)
+|.|+|++|++|+.+|..|.+||||++.++++.++|+++++++||.|||+|.|.+..+ ...|.|+|||.+..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~----~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS----SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC----CCEEEEEEEECCCCcccc
Confidence 7999999999999999999999999999998999999999999999999999998654 46899999987642
Q ss_pred ------CCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEE
Q 002002 84 ------GKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKV 130 (983)
Q Consensus 84 ------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i 130 (983)
.+.+++||++.+++.++. .....||.|++++.++.++|+|++++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~---~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHcc---CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 126899999999999875 44579999999888888999999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.4e-17 Score=154.02 Aligned_cols=121 Identities=25% Similarity=0.398 Sum_probs=100.5
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
...|+|+|++|+||+++ +.+||||.|.+++ +..+|+++ +++||.|||+|.|.+..+. ...|.|.|||.+..+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~---~~~l~v~v~d~~~~~ 75 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPD---VNSFTISLSNKAKRS 75 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCC---cCEEEEEEEECCCCC
Confidence 35799999999999875 4789999999988 45789875 6899999999999875542 357899999988876
Q ss_pred CCCCccEEEEEECccceecCCeeeEEEEceecCC-cceeeeEEEEEEEEecC
Q 002002 85 KRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSV-FSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~-~s~~~G~l~l~i~~~~~ 135 (983)
+|++||++.+++..+. .+.....||+|.+.+. .....|+|+|++.|..+
T Consensus 76 -~d~~iG~v~i~l~~l~-~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 76 -KDSEIAEVTVQLSKLQ-NGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred -CCCeEEEEEEEHhHcc-CCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 8999999999999987 4667789999988753 33567999999999753
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-17 Score=155.91 Aligned_cols=122 Identities=29% Similarity=0.464 Sum_probs=105.1
Q ss_pred cEEEEEEEEeeCCCCCCC--CCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDG--QGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
+.|.|+|++|++|+.++. .|.+||||.+.+++++++|+++++++||.|||+|.|.+.... ...|.|+|||.+..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~---~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ---NQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCC---CCEEEEEEEECCCCC
Confidence 478999999999999988 889999999999999999999999999999999999997632 679999999888775
Q ss_pred CCCCccEEEEEECcccee--cCCeeeEEEEceecCC--cceeeeEEEEEEEE
Q 002002 85 KRSTFLGKVKIAGSTFAK--VGSESSVYYPLEKRSV--FSQIKGEIGLKVYY 132 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~--~~~~~~~w~~L~~~~~--~s~~~G~l~l~i~~ 132 (983)
++++||++.+++.++.. .......||+|.+... .....|+|+|++.|
T Consensus 78 -~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 -GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred -CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 78999999999999873 2244679999987632 23478999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=159.34 Aligned_cols=110 Identities=30% Similarity=0.389 Sum_probs=91.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeee------------cCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHD------------AESMPT 70 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~------------~~~l~~ 70 (983)
+|.|+|++|+||.. .+|.+||||+|.+.+ ++++|+++++++||+|||+|.|.+.. ..++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 58999999999998 568999999999966 67899999999999999999999951 122334
Q ss_pred ceEEEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcc
Q 002002 71 EILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120 (983)
Q Consensus 71 ~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s 120 (983)
..|.|.||+.+..+ +|+|||++.|++..+...+.....||+|++++..+
T Consensus 79 ~~L~i~V~d~~~~~-~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~ 127 (148)
T cd04010 79 LELRVDLWHASMGG-GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKS 127 (148)
T ss_pred EEEEEEEEcCCCCC-CCceeEEEEEecccccccCCcCcceeecCCccccc
Confidence 68999999888775 89999999999999874324568999998886443
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.8e-17 Score=151.74 Aligned_cols=118 Identities=27% Similarity=0.516 Sum_probs=103.8
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
+.|.|+|++|++|+..+..+.+||||++.+++..++|++++++.||.|||+|.|.+... ...|.|+|||.+..+ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~----~~~l~~~v~d~~~~~-~ 75 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI----HDVLEVTVYDEDKDK-K 75 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc----CCEEEEEEEECCCCC-C
Confidence 46899999999999999889999999999999889999999999999999999998654 578999999887765 8
Q ss_pred CCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 87 STFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
+++||++.+++.++. . ....||+|.+.....+.+|+|.+++.+
T Consensus 76 ~~~iG~~~~~l~~~~-~--~~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 76 PEFLGKVAIPLLSIK-N--GERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CceeeEEEEEHHHCC-C--CCceEEECcccCCCCceeeEEEEEEEe
Confidence 899999999999986 2 235799998876666689999999865
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=153.88 Aligned_cols=120 Identities=25% Similarity=0.444 Sum_probs=101.1
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT 83 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~ 83 (983)
.+.+.|.|+|++|++|++.|..|.+||||++.++++.++|+++++++||.|||+|.|.+.... ...|.|+|||.+..
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~---~~~l~i~V~D~d~~ 88 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLE---QDVLCITVFDRDFF 88 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCcc---CCEEEEEEEECCCC
Confidence 345899999999999999999999999999999999999999999999999999999997643 57899999998877
Q ss_pred CCCCCccEEEEEECccceec----CCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 84 GKRSTFLGKVKIAGSTFAKV----GSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~~----~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
+ +|++||++.+++.++... ......|..|.. ..+|+|+|++.+
T Consensus 89 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-----~~~g~i~l~~~~ 135 (136)
T cd08375 89 S-PDDFLGRTEIRVADILKETKESKGPITKRLLLHE-----VPTGEVVVKLDL 135 (136)
T ss_pred C-CCCeeEEEEEEHHHhccccccCCCcEEEEecccc-----ccceeEEEEEEe
Confidence 6 899999999999998841 122335555532 346999999875
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.5e-17 Score=155.74 Aligned_cols=119 Identities=27% Similarity=0.428 Sum_probs=100.7
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCE-------EEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK-------WVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDN 661 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-------~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~ 661 (983)
.|+|+|++|+||+.+ |. .|.+||||++++++. ..+|+++.+++||.|||+|.|.+......|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~---d~-~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKK---DI-FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcc---cC-CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEEC
Confidence 388999999999655 55 789999999998653 5799999999999999999999977677899999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCCe------EEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV------YLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
+..+ +|++||++.+++.++..+.. ...||+|......+ +..|+|++++.|
T Consensus 77 ~~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 77 NRLT--------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCCC--------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 9887 68899999999999876532 35899998654444 457999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-17 Score=154.80 Aligned_cols=105 Identities=28% Similarity=0.409 Sum_probs=91.5
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
...|.|+|++|++|++++ .|.+||||++++. ..+++|+++++++||.|||+|.|.+.....+....|.|.|||.
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 468999999999999999 8999999999995 2578999999999999999999998433344578999999998
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
+..+ ++++||++.+++.++. .+.....||+|
T Consensus 91 d~~~-~~~~lG~~~i~l~~l~-~~~~~~~W~~L 121 (122)
T cd08381 91 DSLV-ENEFLGGVCIPLKKLD-LSQETEKWYPL 121 (122)
T ss_pred CCCc-CCcEEEEEEEeccccc-cCCCccceEEC
Confidence 8876 8999999999999987 44567899988
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=151.18 Aligned_cols=119 Identities=22% Similarity=0.300 Sum_probs=100.6
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKR 666 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~ 666 (983)
.++|+|+|++|++|... |. .|++||||++++++...+|++++++.||+|||.|.|.+.++...|.|+|||++..+
T Consensus 2 ~~~~~V~v~~A~~L~~~---d~-~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~- 76 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQ---DS-GGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC- 76 (126)
T ss_pred cEEEEEEEEeCcCCCCC---CC-CCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCC-
Confidence 46899999999999654 56 88999999999999999999999999999999999999888889999999998754
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecC--CCCCccceEEEEEEEEE
Q 002002 667 DEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLL--PGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 667 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~g~~~~G~l~l~~~f~ 721 (983)
|++||++.+++..+..+. .++|+|.... .++ +..|+|.+++.+.
T Consensus 77 --------d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~-~~~G~i~~~~~~~ 122 (126)
T cd04046 77 --------DEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAG-EVPGTISVKVTSS 122 (126)
T ss_pred --------CCceEEEEEecccCCCcC--ceEEEcccCCCCCCC-CCCCEEEEEEEEc
Confidence 679999999998865444 5778886332 233 4579999998775
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.8e-17 Score=154.19 Aligned_cols=123 Identities=23% Similarity=0.446 Sum_probs=102.4
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEec-CCCEEEEEEEeCCCCCC
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYD-PCTVLTIGVFDNGRYKR 666 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~-~~~~l~i~v~D~d~~~~ 666 (983)
|.|.|+|++|+||+.++.. + .|.+||||++.+++...+|+++++++||.|||.|.|++.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~-~-~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRS-G-KGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCC-C-CCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC-
Confidence 7899999999999876421 2 5789999999999999999999999999999999999987 4679999999999876
Q ss_pred cCCCCCCCCceeEEEEEEccccc---CCCeEEEEEEeeecCCC-CCccceEEEEEEEE
Q 002002 667 DEAGKPGKDVRVGKIRVRLSTLD---TNRVYLNSYSLTVLLPG-GAKKMGEIEIAVRF 720 (983)
Q Consensus 667 ~~~~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~l~l~~~f 720 (983)
.|++||++.+++.++. .......||+|...... .....|+|+|.+.|
T Consensus 78 -------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 -------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred -------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 6789999999999987 33445789999865322 23457999998754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=152.38 Aligned_cols=118 Identities=26% Similarity=0.437 Sum_probs=101.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
+|+|+|++|++|..++..|.+||||++.++++..+|+++++++||.|||+|.|.+.... ...|.|+|||.+..+ ++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~~~v~d~~~~~-~~ 76 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA---DSPLSVEVWDWDLVS-KN 76 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC---CCEEEEEEEECCCCC-CC
Confidence 48999999999999998899999999999999999999999999999999999997642 578999999988776 78
Q ss_pred CccEEEEEECccceecCCeeeEEEEceecCCcc----eeeeEEEEEE
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS----QIKGEIGLKV 130 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s----~~~G~l~l~i 130 (983)
++||++.+++.++. .+.....||.|.+..... ...|.|.+.|
T Consensus 77 ~~iG~~~~~l~~l~-~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 77 DFLGKVVFSIQTLQ-QAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred cEeEEEEEEHHHcc-cCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999999987 345568899998754332 3569988876
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=150.90 Aligned_cols=117 Identities=26% Similarity=0.399 Sum_probs=99.7
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
|.|+|++|+||+++ |. .|++||||++++++. ..||+++.+++||.|||.|.|.+......|.|.|||++..+
T Consensus 2 l~v~vi~a~~L~~~---d~-~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~--- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DI-TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS--- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CC-CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC---
Confidence 78999999999765 56 789999999999875 56999999999999999999999877789999999999987
Q ss_pred CCCCCCCceeEEEEEEcccccCC-CeEEEEEEeeecCCCCCccceEEEEEEE
Q 002002 669 AGKPGKDVRVGKIRVRLSTLDTN-RVYLNSYSLTVLLPGGAKKMGEIEIAVR 719 (983)
Q Consensus 669 ~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~l~l~~~ 719 (983)
+|++||++.+++.++..+ .....|++|......+ ...|+|++.++
T Consensus 75 -----~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 -----RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred -----CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 788999999999988753 3357899998654433 34699998864
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=151.96 Aligned_cols=119 Identities=24% Similarity=0.389 Sum_probs=100.8
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCCCc
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~~~ 667 (983)
.|+|+|++|++|+.+ |. .|.+||||.+++++...+|+++++++||.|||+|.|.+.+. ...|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~---d~-~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~-- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DR-NGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS-- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CC-CCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC--
Confidence 388999999999765 55 67899999999999999999999999999999999999875 468999999999887
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCC---CCccceEEEEEEE
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPG---GAKKMGEIEIAVR 719 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~l~l~~~ 719 (983)
+|++||++.++|.++..+.....||.|...... ..+..|.|++.|+
T Consensus 75 ------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 ------KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred ------CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 678999999999999876666889998864221 1245799999874
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=150.73 Aligned_cols=118 Identities=24% Similarity=0.419 Sum_probs=101.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFD-GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
.|+|+|++|++|+.++..|.+||||++.++ .+.++|+++++++||.|||+|.|.+.. ...|.|+|||.+..+..
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~~ 75 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKKK 75 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCCC
Confidence 389999999999999989999999999997 588999999999999999999999954 57999999998877532
Q ss_pred -CCccEEEEEECccceecCCeeeEEEEceecCC--cceeeeEEEEEE
Q 002002 87 -STFLGKVKIAGSTFAKVGSESSVYYPLEKRSV--FSQIKGEIGLKV 130 (983)
Q Consensus 87 -d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~--~s~~~G~l~l~i 130 (983)
++|||++.+++.++.........||+|++... ...+.|+|.+++
T Consensus 76 ~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 76 DQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 58999999999999855445578999977654 445789999875
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-17 Score=148.29 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=87.0
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
..+.|.|+|++|++|+ . .|.+||||++++.. .+++|+++++|+||+|||+|.|.+.. +++....|.|.|||.
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~-~~l~~~tL~~~V~d~ 87 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPE-EESLDGTLTLTLRCC 87 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCH-HHhCCcEEEEEEEeC
Confidence 4578999999999998 3 36699999999953 57889999999999999999999876 567788999999999
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
|+++ ++++||++.+++..+. .+.....|..|
T Consensus 88 Drfs-~~d~IG~v~l~l~~~~-~~~~~~~W~~~ 118 (118)
T cd08677 88 DRFS-RHSTLGELRLKLADVS-MMLGAAQWVDL 118 (118)
T ss_pred CCCC-CCceEEEEEEcccccc-CCccccchhcC
Confidence 9997 8999999999999874 23444567554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=146.85 Aligned_cols=103 Identities=30% Similarity=0.430 Sum_probs=91.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
.|.|+|++|++|+..+..|.+||||+++++++.++|++++++.||.|||+|.|.+..+. ...|.|+||+.+. +
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~v~v~d~~~----~ 73 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE---NQELEIEVKDDKT----G 73 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC---CCEEEEEEEECCC----C
Confidence 38999999999999998999999999999999999999999999999999999998753 5789999997654 7
Q ss_pred CccEEEEEECccceec-CCeeeEEEEceecC
Q 002002 88 TFLGKVKIAGSTFAKV-GSESSVYYPLEKRS 117 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~-~~~~~~w~~L~~~~ 117 (983)
++||++.+++..+... +...+.||+|++++
T Consensus 74 ~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 74 KSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 8999999999998743 34678999998763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-16 Score=149.19 Aligned_cols=113 Identities=27% Similarity=0.444 Sum_probs=98.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
|.|+|++|++|+..+..|.+||||++.+.+ ++++|++++++.||.|||+|.|.+.... ...|.|+|||.+..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~---~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQV---KNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCccc---CCEEEEEEEECCCC--
Confidence 789999999999999889999999999963 6789999999999999999999987642 56799999987766
Q ss_pred CCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 86 RSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
++++||++.+++..+. .+.....||+|.+.+ +|+|.+++.+
T Consensus 77 ~~~~iG~~~~~l~~l~-~g~~~~~~~~L~~~~-----~g~l~~~~~~ 117 (119)
T cd04036 77 MDDHLGTVLFDVSKLK-LGEKVRVTFSLNPQG-----KEELEVEFLL 117 (119)
T ss_pred CCcccEEEEEEHHHCC-CCCcEEEEEECCCCC-----CceEEEEEEe
Confidence 7899999999999987 667889999998752 5999988865
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=155.21 Aligned_cols=120 Identities=20% Similarity=0.323 Sum_probs=101.5
Q ss_pred cEEEEEEEEeeCCCCCC------------------------------CCCCCCeEEEEEECCe-EEeeeCcCCCCCCeee
Q 002002 7 RKLIVEVCNAKNLMPKD------------------------------GQGTASAYVIVDFDGQ-RRRTKTKFRDLNPQWD 55 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d------------------------------~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~Wn 55 (983)
+.|.|+|.+|++|+.+| ..|++||||+|.+++. ..+|++++++.||.||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 57899999999999987 3577999999999984 4699999999999999
Q ss_pred eEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcce-eeeEEEEEEEEe
Q 002002 56 ERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQ-IKGEIGLKVYYI 133 (983)
Q Consensus 56 E~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~-~~G~l~l~i~~~ 133 (983)
|+|.|.+... ...|.|.|||++.. ++++||++.++++++. .+...+.||+|.+..+... ..|.|++++.|+
T Consensus 87 E~F~~~~~~~----~~~l~~~V~d~d~~--~~~~IG~~~i~l~~l~-~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 87 ESFHIYCAHY----ASHVEFTVKDNDVV--GAQLIGRAYIPVEDLL-SGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred eEEEEEccCC----CCEEEEEEEeCCCc--CCcEEEEEEEEhHHcc-CCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 9999998664 56899999987766 4689999999999988 5677889999987644432 348999998874
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=148.71 Aligned_cols=105 Identities=17% Similarity=0.289 Sum_probs=90.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~ 657 (983)
..|.|.|+|++|+||++++ ...|.+||||++.+.+ ...||+++++++||.|||+|.|++.. ....|.|+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~---~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGD---EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred CCCeEEEEEEEecCCCccC---CCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 4678999999999998763 2257899999999842 35799999999999999999999864 24589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|||++..+ +|++||.+.|+|.++......+.||||.
T Consensus 90 V~d~~~~~--------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 90 VWHYDRFG--------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEECCCCC--------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999887 7789999999999999888889999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-16 Score=149.20 Aligned_cols=118 Identities=25% Similarity=0.479 Sum_probs=99.3
Q ss_pred EEEEEEEceeccccccccCC--CCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEec-CCCEEEEEEEeCCCC
Q 002002 588 GLLEVGIRGATNLLPVKTKD--GTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYD-PCTVLTIGVFDNGRY 664 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d--~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~-~~~~l~i~v~D~d~~ 664 (983)
|.|+|+|++|+||+.++..- ...|.+||||++++++...+|++++++.||.|||.|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 68999999999997764210 013689999999999999999999999999999999999975 456999999999875
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
+|++||++.+++.++..+.....||+|... ..|+|++.++|
T Consensus 81 ---------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 81 ---------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred ---------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 366999999999999887777899999743 35999998765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=149.20 Aligned_cols=120 Identities=33% Similarity=0.420 Sum_probs=100.0
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC--EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP--KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRY 664 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~--~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~ 664 (983)
+|.|+|+|++|++|+.. +...|.+||||++++++ ...+|+++.++.||.|||.|.|.+......|.|+|||++..
T Consensus 1 ~g~l~v~v~~a~~L~~~---~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~ 77 (124)
T cd04044 1 IGVLAVTIKSARGLKGS---DIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDK 77 (124)
T ss_pred CeEEEEEEEcccCCCcc---cccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCC
Confidence 58999999999999743 32156799999999987 78999999999999999999999986678999999999987
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCCeEEE-EEEeeecCCCCCccceEEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLN-SYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+ .|++||++.++|.++..+..... ++++. ..| +..|+|++.++|.
T Consensus 78 ~--------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~---~~~-k~~G~i~~~l~~~ 123 (124)
T cd04044 78 R--------KDKLIGTAEFDLSSLLQNPEQENLTKNLL---RNG-KPVGELNYDLRFF 123 (124)
T ss_pred C--------CCceeEEEEEEHHHhccCccccCcchhhh---cCC-ccceEEEEEEEeC
Confidence 6 68899999999999987765543 33343 233 4579999999984
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-16 Score=148.08 Aligned_cols=115 Identities=30% Similarity=0.516 Sum_probs=99.3
Q ss_pred cEEEEEEEEeeCCCCCCC------CCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 7 RKLIVEVCNAKNLMPKDG------QGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~------~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
+.|.|+|++|++|+.+|. .|.+||||+++++++.++|+++++++||.|||+|.|.+.... ...|.|.|||.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~---~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVP---GQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCC---CCEEEEEEEec
Confidence 368999999999998875 368999999999999999999999999999999999987542 67999999987
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
+.. ++++||++.+++.++. .+.....||+|.+. ..|+|++.+.|
T Consensus 78 ~~~--~~~~iG~~~i~l~~l~-~~~~~~~w~~L~~~-----~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD--KDDFLGRLSIDLGSVE-KKGFIDEWLPLEDV-----KSGRLHLKLEW 121 (121)
T ss_pred CCC--CCCcEEEEEEEHHHhc-ccCccceEEECcCC-----CCceEEEEEeC
Confidence 765 7899999999999988 44567899999864 35999998754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-16 Score=149.36 Aligned_cols=124 Identities=22% Similarity=0.374 Sum_probs=101.2
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeec----CCC--CCceEEEEEEeC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDA----ESM--PTEILEINLYND 80 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~----~~l--~~~~L~v~V~~~ 80 (983)
+.|+|+|++|++|+.+|..|.+||||+|.+++++++|+++++++||.|||+|.|.+... ..+ ....|.|+|||.
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999999985431 111 125789999998
Q ss_pred CCCCCCCCccEEEEE-ECcccee--cCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 81 KKTGKRSTFLGKVKI-AGSTFAK--VGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i-~l~~l~~--~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
+..+ +|++||++.+ ++..+.. .+....+|++|.+.+ ...|+|++.+.+..
T Consensus 81 d~~~-~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVG-KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIE 133 (135)
T ss_pred cCCC-CCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEE
Confidence 8775 8899999987 4444432 245677999998654 25799999998864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-16 Score=147.86 Aligned_cols=117 Identities=23% Similarity=0.376 Sum_probs=99.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-------------eEEeeeCcCCCCCCee-eeEEEEEeeecCCCCCceE
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-------------QRRRTKTKFRDLNPQW-DERLEFLVHDAESMPTEIL 73 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------------~~~~T~~~~~t~nP~W-nE~f~f~v~~~~~l~~~~L 73 (983)
...|++++|+||. ++..|.+||||++++.. ++++|+++++++||+| ||+|.|.+.. .+.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-----~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-----TDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-----CCEE
Confidence 4679999999998 77789999999999942 4789999999999999 9999999853 4689
Q ss_pred EEEEEeCCCCCC--CCCccEEEEEECccceec--CCeeeEEEEceecCCcceeeeEEEEEE
Q 002002 74 EINLYNDKKTGK--RSTFLGKVKIAGSTFAKV--GSESSVYYPLEKRSVFSQIKGEIGLKV 130 (983)
Q Consensus 74 ~v~V~~~~~~~~--~d~~lG~~~i~l~~l~~~--~~~~~~w~~L~~~~~~s~~~G~l~l~i 130 (983)
.|+|||.+..+. .+++||++.+++.++... .....+||+|++++.++.++|+|.+++
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999998654331 279999999999999743 344778999999999999999999986
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=144.27 Aligned_cols=97 Identities=23% Similarity=0.358 Sum_probs=83.4
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecC--CCEEEEEEEeCCCCC
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP--CTVLTIGVFDNGRYK 665 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~--~~~l~i~v~D~d~~~ 665 (983)
|+|.|+|++|++|++.+......+++||||++++++...||+++++++||+|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 789999999999988753211134689999999999999999999999999999999998654 348999999999987
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCC
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDTNR 692 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~~~ 692 (983)
+|++||++.++|++|..+.
T Consensus 81 --------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 --------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --------CCcceEEEEEEHHHHHhhC
Confidence 7889999999999997654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-16 Score=150.82 Aligned_cols=105 Identities=25% Similarity=0.332 Sum_probs=90.3
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEE-eC
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVF-DN 661 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~-D~ 661 (983)
|.|.|+|++|+||++++ +. .|.+||||++++.. .+.||+++++|+||+|||+|.|.+......|.|+|| |+
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~-~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~ 105 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GS-KVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDY 105 (146)
T ss_pred CEEEEEEEEeeCCCccc--CC-CCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCC
Confidence 58999999999998753 23 67899999999843 377999999999999999999999866669999999 57
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
+..+ ++++||.+.|+|+++..+.....||+|...
T Consensus 106 ~~~~--------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 106 GRMD--------KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCC--------CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 7665 677999999999999877777899999854
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-16 Score=146.97 Aligned_cols=123 Identities=23% Similarity=0.376 Sum_probs=97.7
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
.|+|+|++|++|+.+ |. .|.+||||++++++...+|+++.+++||.|||.|.|.+..+...|.|+|||+|......
T Consensus 2 ~L~V~vi~a~~L~~~---d~-~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAK---DK-TGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCC---CC-CCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccc
Confidence 589999999999765 56 78999999999999999999999999999999999999777779999999998531000
Q ss_pred C--C-CCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEE
Q 002002 669 A--G-KPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAV 718 (983)
Q Consensus 669 ~--~-~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~ 718 (983)
. . ....|++||.+.+++.++.... ..||+|......+ +..|+|.+.+
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCC-cEeEEEEEEC
Confidence 0 0 0015779999999999986544 7899998654332 3579998864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=149.68 Aligned_cols=107 Identities=27% Similarity=0.528 Sum_probs=91.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCC-CCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQ-GTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
....|.|+|++|+||+++|.. |.+||||++.+. ..+++|+++++++||+|||+|.|.+... .+....|.|.||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~-~l~~~~L~~~V~ 91 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE-ELPTRVLNLSVW 91 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH-HhCCCEEEEEEE
Confidence 346899999999999999975 899999999994 2468999999999999999999998652 345679999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
|.+..+ ++++||++.++|..+. .+.....||+|+
T Consensus 92 d~~~~~-~~~~iG~~~i~L~~~~-~~~~~~~W~~L~ 125 (125)
T cd08393 92 HRDSLG-RNSFLGEVEVDLGSWD-WSNTQPTWYPLQ 125 (125)
T ss_pred eCCCCC-CCcEeEEEEEecCccc-cCCCCcceEECc
Confidence 988776 8999999999999986 335667899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-16 Score=148.15 Aligned_cols=100 Identities=25% Similarity=0.322 Sum_probs=87.7
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec----CCCEEEEEE
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD----PCTVLTIGV 658 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~----~~~~l~i~v 658 (983)
|.|.|.|++|+||++++ .|.+||||++.+.+ .+.||+++++++||.|||+|.|++.. ....|.|+|
T Consensus 13 ~~L~V~Vi~A~~L~~~~-----~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V 87 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-----GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSV 87 (122)
T ss_pred CEEEEEEEEeeCCCCCC-----CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEE
Confidence 57999999999998773 57899999999963 47899999999999999999998722 345899999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEe
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSL 700 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 700 (983)
||++..+ +|++||++.|+|+++..+.....||+|
T Consensus 88 ~d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 88 WSHDSLV--------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred EeCCCCc--------CCcEEEEEEEeccccccCCCccceEEC
Confidence 9999987 678999999999999988777899987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-16 Score=145.62 Aligned_cols=112 Identities=28% Similarity=0.363 Sum_probs=95.7
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC---EEEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYK 665 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~---~~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~ 665 (983)
|.|+|++|++|+.. |. .|++||||++++++ ...||++++++.||+|||+|.|.+... ...|.|+|||++..+
T Consensus 2 L~V~vi~a~~L~~~---~~-~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~ 77 (119)
T cd04036 2 LTVRVLRATNITKG---DL-LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVM 77 (119)
T ss_pred eEEEEEEeeCCCcc---CC-CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCC
Confidence 78999999999654 55 78999999999863 678999999999999999999998754 457999999998763
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
|++||++.++++++..|.....||+|... +.|+|++++.+
T Consensus 78 ---------~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~ 117 (119)
T cd04036 78 ---------DDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLL 117 (119)
T ss_pred ---------CcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEe
Confidence 56999999999999999888999998743 25888888755
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-16 Score=149.16 Aligned_cols=106 Identities=23% Similarity=0.343 Sum_probs=89.8
Q ss_pred CcEEEEEEEEeeCCCCCC-CCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 6 NRKLIVEVCNAKNLMPKD-GQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
...|.|+|++|+||++++ ..|.+||||++++.. .+++|+++++++||+|||+|.|.+.. ....|.|+||+
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l----~~~~L~v~V~~ 103 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP----TGKTLQVIVWG 103 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcC----CCCEEEEEEEe
Confidence 468999999999999875 568899999999942 37899999999999999999999973 37899999995
Q ss_pred -CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 80 -DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 80 -~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
.+.+. +++|||++.|+|+.+. .+.....||+|.+..
T Consensus 104 d~~~~~-~~~~iG~~~i~L~~l~-~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 104 DYGRMD-KKVFMGVAQILLDDLD-LSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCCC-CCceEEEEEEEccccc-CCCCceeEEecCCcc
Confidence 44554 8999999999999985 345678899998763
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-16 Score=146.80 Aligned_cols=105 Identities=23% Similarity=0.347 Sum_probs=88.7
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~ 657 (983)
..+.|.|+|++|+||+++ |...|.+||||.+.+.+ ...||+++++++||.|||.|.|++.. ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 13 KLRELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred CCCEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 346899999999999887 43137899999999842 35799999999999999999999863 23589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|||++..+ ++++||.+.|+|.++..+.....||+|.
T Consensus 90 V~d~~~~~--------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 90 VWHRDSLG--------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EEeCCCCC--------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999887 7789999999999998777778899873
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-16 Score=148.30 Aligned_cols=108 Identities=24% Similarity=0.429 Sum_probs=92.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCC-CCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQ-GTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
....|.|+|++|+||++++.. |.+||||++++. ..++||+++++++||+|||+|.|.+.. ..+....|.|.||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~-~~l~~~~L~v~V~ 91 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA-DLLSSRQLQVSVW 91 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCH-HHhCCcEEEEEEE
Confidence 357899999999999999875 999999999994 247899999999999999999999865 3455679999999
Q ss_pred eCCCCCCCCCccEEEEEECccceec--CCeeeEEEEce
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKV--GSESSVYYPLE 114 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~w~~L~ 114 (983)
+.+..+ ++++||++.|+++++.-. ++....||+|.
T Consensus 92 ~~~~~~-~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 92 HSRTLK-RRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred eCCCCc-CcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 988775 899999999999998633 45678999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=146.63 Aligned_cols=116 Identities=24% Similarity=0.452 Sum_probs=100.4
Q ss_pred CcEEEEEEEEeeCCCCCCCC----------CCCCeEEEEEECCeE-EeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEE
Q 002002 6 NRKLIVEVCNAKNLMPKDGQ----------GTASAYVIVDFDGQR-RRTKTKFRDLNPQWDERLEFLVHDAESMPTEILE 74 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~----------g~~dPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~ 74 (983)
.+.|+|+|++|++|.+.|.. |.+||||++.+++++ .+|+++++++||.|||+|.|.+.. ...|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-----~~~l~ 77 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-----GRNLE 77 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-----CCEEE
Confidence 46899999999999988863 689999999999854 699999999999999999999963 57899
Q ss_pred EEEEeCCCCCCCCCccEEEEEECccceec-CCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 75 INLYNDKKTGKRSTFLGKVKIAGSTFAKV-GSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 75 v~V~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
|.||+++..+ ++++||++.++++++... +.....|++|++ .|+|++++.|..
T Consensus 78 ~~v~d~~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 78 LTVFHDAAIG-PDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred EEEEeCCCCC-CCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEec
Confidence 9999877765 789999999999998853 566899999974 399999998864
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-16 Score=143.02 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=84.3
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC----EEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP----KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIG 657 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~----~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~ 657 (983)
+..|.|.|+|++|++|+ + .|.+||||.+.+.. .+.+|++.++|+||+|||+|.|.|.. +...|.|.
T Consensus 11 ~~~~~L~V~vikA~~L~-~------~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 11 KQKAELHVNILEAENIS-V------DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred CcCCEEEEEEEEecCCC-C------CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 45689999999999996 2 45699999999864 57799999999999999999999864 34589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEE
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYS 699 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 699 (983)
|||+|+++ ++++||++.+++.++..+...++|..
T Consensus 84 V~d~Drfs--------~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 84 LRCCDRFS--------RHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred EEeCCCCC--------CCceEEEEEEccccccCCccccchhc
Confidence 99999998 78899999999998755544567754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-16 Score=143.68 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=86.9
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEE-C----C--EEEEeeeecCCCCCeeceEEEEEEecC----CCEEEEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY-G----P--KWVRTRTILDRFNPRWNEQYTWDVYDP----CTVLTIG 657 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~-~----~--~~~rT~~~~~t~nP~Wne~~~~~v~~~----~~~l~i~ 657 (983)
.|.|+|++|++|+.. + .|.+||||++++ | . ++.+|+++.+++||+|||.|+|.+... ...|.|.
T Consensus 1 kL~V~Vi~A~~L~~~---d--~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~ 75 (120)
T cd08395 1 KVTVKVVAANDLKWQ---T--TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHIC 75 (120)
T ss_pred CEEEEEEECcCCCcc---c--CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEE
Confidence 388999999999764 3 589999999997 3 2 357999999999999999999999732 2469999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
|||++..+ +|++||++.++|+++..+.....|++|...
T Consensus 76 V~D~d~~~--------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 76 VKDYCFAR--------DDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred EEEecccC--------CCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 99999765 688999999999999988888899999743
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-16 Score=150.05 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=93.7
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEe---------------c
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVY---------------D 649 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~---------------~ 649 (983)
|.|+|++|+||++ . .|.+||||++.+.+ ...||+++++|+||+|||.|.|++. +
T Consensus 2 L~V~Vi~ArnL~~-----~-~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 2 LSVRVIECSDLAL-----K-NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred EEEEEEeCcCCCC-----C-CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 7899999999975 2 78999999999965 5779999999999999999999995 1
Q ss_pred CC-CEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCC-CeEEEEEEeeecCCCC---------CccceEEEEEE
Q 002002 650 PC-TVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN-RVYLNSYSLTVLLPGG---------AKKMGEIEIAV 718 (983)
Q Consensus 650 ~~-~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g---------~~~~G~l~l~~ 718 (983)
.. ..|.|.|||++..+ .|++||++.|+|..+..+ .....||+|....... ....|.|++.+
T Consensus 76 ~~~~~L~i~V~d~~~~~--------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 76 AEKLELRVDLWHASMGG--------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred ccEEEEEEEEEcCCCCC--------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 12 47999999999876 688999999999999876 5568999997653211 12357788765
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-16 Score=146.75 Aligned_cols=107 Identities=26% Similarity=0.442 Sum_probs=91.4
Q ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDG-QGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
..+.|.|+|++|+||++++. .|.+||||++++. ..+++|+++++++||.|||+|.|.+... .+....|.|.||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~-~l~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS-QLETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH-HhCCCEEEEEEE
Confidence 45789999999999999876 4799999999994 2468999999999999999999998652 344678999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
|.+..+ ++++||++.+++..+. .......||+|.
T Consensus 92 d~~~~~-~~~~lG~~~i~l~~~~-~~~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRFG-RNTFLGEVEIPLDSWN-FDSQHEECLPLH 125 (125)
T ss_pred ECCCCC-CCcEEEEEEEeCCccc-ccCCcccEEECc
Confidence 988876 8999999999999987 346688999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=145.25 Aligned_cols=104 Identities=21% Similarity=0.363 Sum_probs=91.0
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVF 659 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~ 659 (983)
..|.|.|+|++|+||+++ |. .|.+||||.+.+. ....||+++++++||.|||.|.|.+... ...|.|+||
T Consensus 14 ~~~~L~V~v~~a~~L~~~---d~-~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 14 DMGILNVKLIQARNLQPR---DF-SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred CCCEEEEEEEEeeCCCCC---CC-CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 457899999999999765 56 7899999999984 3568999999999999999999998643 458999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|++..+ +|++||++.|+|+++..+...+.||+|.
T Consensus 90 d~~~~~--------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 90 DFDQFS--------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ECCCCC--------CCceeEEEEEecccccCCCCcceEEECc
Confidence 999887 6889999999999998777889999885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-16 Score=146.08 Aligned_cols=107 Identities=19% Similarity=0.247 Sum_probs=92.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC--C----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD--G----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
....|.|+|++|+||++.+..|.+||||++.+- . .+++|+++++++||+|||+|.|.+.. +++....|.|.||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~-~~L~~~~L~~~V~ 90 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISS-TKLYQKTLQVDVC 90 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCH-HHhhcCEEEEEEE
Confidence 457899999999999999988999999999983 2 47899999999999999999999865 4567899999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
+.+..+ ++++||++.|+++++...+.....||+|
T Consensus 91 ~~~~~~-~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 91 SVGPDQ-QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred eCCCCC-ceeEEEEEEEEhhhccCCCccccccccC
Confidence 988775 8999999999999986444557789876
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-16 Score=143.58 Aligned_cols=102 Identities=25% Similarity=0.408 Sum_probs=89.0
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCee-ceEEEEEEecC---CCEEEEEEEeCCCCC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRW-NEQYTWDVYDP---CTVLTIGVFDNGRYK 665 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~W-ne~~~~~v~~~---~~~l~i~v~D~d~~~ 665 (983)
|.|+|++|+||+.++. . .|.+||||++++++...||+++.+++||.| ||.|.|.+... ...|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~--~-~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--S-SDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCcccc--C-CCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 5799999999987631 2 578999999999999999999999999999 99999999753 368999999999987
Q ss_pred CcCCCCCCCCceeEEEEEEcccccC---CCeEEEEEEeee
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDT---NRVYLNSYSLTV 702 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 702 (983)
+|++||++.+++.++.. +..+..||+|.+
T Consensus 78 --------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 --------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred --------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 67899999999999976 455788999863
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-16 Score=145.19 Aligned_cols=105 Identities=28% Similarity=0.411 Sum_probs=89.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
....|.|+|++|+||++++ .|.+||||++++.. .+++|+++++++||.|||+|.|.+.... + ...|.|.||+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~-~-~~~l~v~V~~ 86 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERD-Y-QKRLLVTVWN 86 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHH-h-CCEEEEEEEC
Confidence 3578999999999999998 78999999999953 4678999999999999999999986532 2 3468899998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
.+....++++||++.|++.++. .++....||.|
T Consensus 87 ~~~~~~~~~~lG~~~i~l~~~~-~~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKSRDSGLLGCMSFGVKSIV-NQKEISGWYYL 119 (119)
T ss_pred CCCCcCCCEEEEEEEecHHHhc-cCccccceEeC
Confidence 7766435789999999999998 56777899986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.5e-16 Score=143.12 Aligned_cols=105 Identities=29% Similarity=0.415 Sum_probs=91.5
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCeEEEEEECCeEEeeeCcCCCCCCee-eeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDG-QGTASAYVIVDFDGQRRRTKTKFRDLNPQW-DERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~t~nP~W-nE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
|.|+|++|++|+.++. .|.+||||++.+++++++|+++++++||.| ||+|.|.+.... +....|.|+|||.+..+ +
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~-l~~~~l~i~V~d~d~~~-~ 78 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE-LQDEPLQIRVMDHDTYS-A 78 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHH-cCCCeEEEEEEeCCCCC-C
Confidence 6899999999999884 689999999999999999999999999999 999999997642 33578999999988776 8
Q ss_pred CCccEEEEEECccceec--CCeeeEEEEcee
Q 002002 87 STFLGKVKIAGSTFAKV--GSESSVYYPLEK 115 (983)
Q Consensus 87 d~~lG~~~i~l~~l~~~--~~~~~~w~~L~~ 115 (983)
+++||++.+++..+... +.....||+|.+
T Consensus 79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 89999999999999842 345788999864
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=169.41 Aligned_cols=253 Identities=20% Similarity=0.265 Sum_probs=174.6
Q ss_pred eEEEeeeeeeccCCCCCCCCcccceEEEEecCCCCCcEEEEEEeCc-------CCceeEEEEEecccccccccCCCCCcc
Q 002002 463 QLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVT-------NGCSVGHARIQMSTVERRIDDRAEPKS 535 (983)
Q Consensus 463 ~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D~d-------~d~~lG~~~i~L~~l~~~~~~~~~~~~ 535 (983)
+..||..+. +.+||.|.+.|.+.+.++..+.|++.++|.+ ..+|+|++.+.++.+...... .
T Consensus 41 e~~rte~i~------~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~-----~ 109 (529)
T KOG1327|consen 41 EVGRTEVIR------NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL-----T 109 (529)
T ss_pred cccceeeee------ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh-----h
Confidence 344888875 5899999999999999899999999999877 579999999999998754211 1
Q ss_pred eEEeccCCCCCCcceEEEEEEEEeccccccccccccCCchhHHHHhhccCCcEEEEEEEceeccccccccCCCCCCCCCc
Q 002002 536 RWFNLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDA 615 (983)
Q Consensus 536 ~w~~L~~~~~~~~~G~l~l~i~l~g~~~v~~~~~~~~~d~~~~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDp 615 (983)
.-+.++... ....|.|.+.+ ++..+ . ....+ -.++|.+| +++|. ++++||
T Consensus 110 ~~l~~~~~~-~~~~g~iti~a--ee~~~---------~-------------~~~~~-~~~~~~~l---d~kd~-f~ksd~ 159 (529)
T KOG1327|consen 110 GPLLLKPGK-NAGSGTITISA--EEDES---------D-------------NDVVQ-FSFRAKNL---DPKDF-FSKSDP 159 (529)
T ss_pred hhhhcccCc-cCCcccEEEEe--ecccc---------c-------------Cceee-eeeeeeec---Ccccc-cccCCc
Confidence 112222211 11245554442 21110 0 00111 22568899 77788 999999
Q ss_pred EEEEEE--CC----EEEEeeeecCCCCCeeceEEEEEEe-----cCCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEE
Q 002002 616 YVVAKY--GP----KWVRTRTILDRFNPRWNEQYTWDVY-----DPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVR 684 (983)
Q Consensus 616 y~~~~~--~~----~~~rT~~~~~t~nP~Wne~~~~~v~-----~~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~ 684 (983)
|..+.- +. ...+|.++++++||.| ..|.++.. ++...+.|.|||++..+ +|++||++..+
T Consensus 160 ~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w-~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~--------~~~~ig~~~tt 230 (529)
T KOG1327|consen 160 YLEFYKRVDDGSTQMLYRTEVVKNTLNPQW-APFSISLQSLCSKDGNRPIQIECYDYDSNG--------KHDLIGKFQTT 230 (529)
T ss_pred ceEEEEecCCCceeeccccceeccCCCCcc-cccccchhhhcccCCCCceEEEEeccCCCC--------CcCceeEeccc
Confidence 998864 22 3459999999999999 44776664 44568999999999987 77899999999
Q ss_pred cccccC-CCeEEEEEEeeecCCCC----CccceEEEE-------------------EEEEEecChHHHHHHhcCCCCC-c
Q 002002 685 LSTLDT-NRVYLNSYSLTVLLPGG----AKKMGEIEI-------------------AVRFTCSSWLNLIQAYATPMLP-R 739 (983)
Q Consensus 685 l~~l~~-~~~~~~~~~L~~~~~~g----~~~~G~l~l-------------------~~~f~~~~~~~~~~~~~~p~~p-~ 739 (983)
++++.. +. ...+++.....+. .+.+|.+.+ ++.|+.. +|+.++|+.|..| +
T Consensus 231 ~~~~~~~~~--~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vg--IDfTaSNg~p~~~sS 306 (529)
T KOG1327|consen 231 LSELQEPGS--PNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVG--IDFTASNGDPRNPSS 306 (529)
T ss_pred HHHhcccCC--cccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeEEE--EEEeccCCCCCCCCc
Confidence 999863 22 2223333322211 122455442 1222211 4666899999888 9
Q ss_pred ccccCCCChhhHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhcCCCcce
Q 002002 740 MHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVVQFMLDTDTHV 788 (983)
Q Consensus 740 ~hy~~p~~~~q~~~l~~~a~~~v~~~l~~~~p~l~~~vv~~~~d~~~~~ 788 (983)
+||++|..+|+| .+|+ ++|++.+++||+++
T Consensus 307 LHyi~p~~~N~Y----~~Ai---------------~~vG~~lq~ydsdk 336 (529)
T KOG1327|consen 307 LHYIDPHQPNPY----EQAI---------------RSVGETLQDYDSDK 336 (529)
T ss_pred ceecCCCCCCHH----HHHH---------------HHHhhhhcccCCCC
Confidence 999999999999 7788 67899999998876
|
|
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=144.63 Aligned_cols=120 Identities=23% Similarity=0.361 Sum_probs=98.9
Q ss_pred cEEEEEEEEeeCCCCCC-CCCCCCeEEEEEECC--eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC
Q 002002 7 RKLIVEVCNAKNLMPKD-GQGTASAYVIVDFDG--QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT 83 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~ 83 (983)
+.|.|+|++|++|+..+ ..|.+||||++++++ +.++|+++.+++||.|||.|.|.+... ...|.|+|||.+..
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~----~~~l~~~v~d~~~~ 77 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSL----TEPLNLTVYDFNDK 77 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCC----CCEEEEEEEecCCC
Confidence 47999999999999755 456799999999987 789999999999999999999998743 67999999988877
Q ss_pred CCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 84 GKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
+ +|++||++.+++.++...+.....|+.|... .+..|+|++.+.|.+
T Consensus 78 ~-~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~---~k~~G~i~~~l~~~p 124 (124)
T cd04044 78 R-KDKLIGTAEFDLSSLLQNPEQENLTKNLLRN---GKPVGELNYDLRFFP 124 (124)
T ss_pred C-CCceeEEEEEEHHHhccCccccCcchhhhcC---CccceEEEEEEEeCC
Confidence 5 8999999999999998443333345556532 235799999999863
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=141.00 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=86.5
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCc
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~ 667 (983)
|.|.|+|++|++|+. .+..||||++++|+.+.+|++++++ ||.|||+|.|.+.++...|.|+|||++..
T Consensus 2 ~~L~V~Vv~Ar~L~~-------~~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~--- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGA-------PDKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI--- 70 (127)
T ss_pred ceEEEEEEEeeCCCC-------CCCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc---
Confidence 689999999999943 3456999999999999999999885 99999999999988888899999999864
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCeE--EEEEEeeec
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRVY--LNSYSLTVL 703 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 703 (983)
.|++||++.|+|+++..+... ..||+|...
T Consensus 71 ------~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 ------WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred ------CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 477999999999998865544 789999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-15 Score=143.01 Aligned_cols=118 Identities=21% Similarity=0.390 Sum_probs=100.6
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT 83 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~ 83 (983)
+.|.|+|++|++|+..+..|.+||||++.+++ ..++|+++++++||.|||+|.|.+.... ...|.|.||+.+..
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~---~~~L~i~v~d~d~~ 77 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGE---PLWISATVWDRSFV 77 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCC---CCEEEEEEEECCCC
Confidence 47899999999999999999999999999864 4689999999999999999999997642 57899999988877
Q ss_pred CCCCCccEEEEEECcccee-c-CCeeeEEEEceecCCcceeeeEEEEEEEEecC
Q 002002 84 GKRSTFLGKVKIAGSTFAK-V-GSESSVYYPLEKRSVFSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~-~-~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~ 135 (983)
+ ++++||++.++++.+.. . +.....|++|.+ .|+|++++.+..+
T Consensus 78 ~-~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~~~ 123 (126)
T cd04043 78 G-KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSMEGE 123 (126)
T ss_pred C-CCceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEeee
Confidence 5 89999999999987642 2 456779999975 3999999988653
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=143.99 Aligned_cols=119 Identities=21% Similarity=0.265 Sum_probs=99.3
Q ss_pred cEEEEEEEceeccccccccCC---C---CCCCCCcEEEEEECCEE-EEeeeecCCCCCeeceEEEEEEecCCCEEEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKD---G---TRGTTDAYVVAKYGPKW-VRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVF 659 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d---~---~~g~sDpy~~~~~~~~~-~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~ 659 (983)
.|.|+|+|++|+||...+... . ..|.+||||++.++++. .+|+++.+++||.|||+|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 589999999999997653210 0 02689999999999855 69999999999999999999996 4578999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccC--CCeEEEEEEeeecCCCCCccceEEEEEEEEEe
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT--NRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTC 722 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~ 722 (983)
|++..+ +|++||++.++|+++.. +.....||+|. +.|.|++.+.|..
T Consensus 82 d~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG--------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC--------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 999877 67899999999999886 56678999986 2499999998863
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=145.06 Aligned_cols=110 Identities=19% Similarity=0.274 Sum_probs=91.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCC-CCCCeEEEEEEC---CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQ-GTASAYVIVDFD---GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
....|.|+|++|+||++.+.. |.+||||++.+. ++++||+++++++||.|||+|.|.......+....|.+.||+.
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 457899999999999999886 899999999984 3678999999999999999999943332333456899999998
Q ss_pred CCCCCCCCccEEEEEECccceec-CCeeeEEEEcee
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKV-GSESSVYYPLEK 115 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~w~~L~~ 115 (983)
+.++ ++++||++.+++..+... ++....|++|++
T Consensus 94 d~~~-~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 94 DRYS-RDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred CCCC-CCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 8876 899999999999998633 466888998863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-15 Score=142.61 Aligned_cols=117 Identities=26% Similarity=0.386 Sum_probs=100.5
Q ss_pred EEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEE
Q 002002 13 VCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGK 92 (983)
Q Consensus 13 v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~ 92 (983)
|++|++|+. ..|.+||||+|.+++.+++|++++++.||.|||+|.|.+..+. .....|.|+||+.+..+ ++++||+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~~-~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKVG-RNRLIGS 77 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCCC-CCceEEE
Confidence 689999998 5789999999999999999999999999999999999996531 23689999999988775 8899999
Q ss_pred EEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecC
Q 002002 93 VKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 93 ~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~ 135 (983)
+.++++++. .+.....|++|.+.... ...|+|++.+.|.+.
T Consensus 78 ~~~~l~~l~-~~~~~~~~~~L~~~~~~-~~~~~l~l~~~~~~~ 118 (127)
T cd08373 78 ATVSLQDLV-SEGLLEVTEPLLDSNGR-PTGATISLEVSYQPP 118 (127)
T ss_pred EEEEhhHcc-cCCceEEEEeCcCCCCC-cccEEEEEEEEEeCC
Confidence 999999988 55678889999866543 357999999999853
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-15 Score=142.33 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=98.5
Q ss_pred EceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEEeCCCCCCcCCC
Q 002002 594 IRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVFDNGRYKRDEAG 670 (983)
Q Consensus 594 v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~D~d~~~~~~~~ 670 (983)
|++|++|+. . .|++||||++.+++...+|++++++.||+|||.|.|++..+ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~-~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~----- 70 (127)
T cd08373 2 VVSLKNLPG-----L-KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG----- 70 (127)
T ss_pred eEEeeCCcc-----c-CCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC-----
Confidence 678999964 3 78999999999999999999999999999999999999754 569999999999887
Q ss_pred CCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 671 KPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 671 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
+|++||++.++|+++..+.....|++|.... +....|+|++++.|.+.
T Consensus 71 ---~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 71 ---RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP 118 (127)
T ss_pred ---CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence 6789999999999999888888999997543 22235999999999753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-15 Score=142.54 Aligned_cols=118 Identities=20% Similarity=0.317 Sum_probs=95.4
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEEC-CEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-PKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
|+|+|++|++|+.+ |. .|.+||||++.++ ....||+++++++||.|||.|.|.+.. ...|.|+|||++..+.
T Consensus 2 l~v~v~~A~~L~~~---~~-~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~-- 74 (123)
T cd08382 2 VRLTVLCADGLAKR---DL-FRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKK-- 74 (123)
T ss_pred eEEEEEEecCCCcc---CC-CCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCC--
Confidence 78999999999665 56 7899999999996 678899999999999999999999965 7799999999998761
Q ss_pred CCCCCCCceeEEEEEEcccccCCCeE-EEEEEeeecCCCC-CccceEEEEEE
Q 002002 669 AGKPGKDVRVGKIRVRLSTLDTNRVY-LNSYSLTVLLPGG-AKKMGEIEIAV 718 (983)
Q Consensus 669 ~~~~~~d~~lG~~~i~l~~l~~~~~~-~~~~~L~~~~~~g-~~~~G~l~l~~ 718 (983)
..|++||++.+++.++...... ..||+|....... ....|+|.+.+
T Consensus 75 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 ----KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred ----CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 0257999999999998754322 5689997654321 23368888765
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-15 Score=142.28 Aligned_cols=123 Identities=19% Similarity=0.306 Sum_probs=101.4
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEE-EEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW-VRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYK 665 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~-~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~ 665 (983)
...|.|.|++|+||+++ .||||.+.+++.. .||+++.++.||.|+|.|.|+...+...|+|.||+.+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~---------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~ 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK---------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEccCCCCc---------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc
Confidence 35799999999999765 2799999999866 5999999999999999999987777789999998765432
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCC-------CccceEEEEEEEEEe
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGG-------AKKMGEIEIAVRFTC 722 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~l~l~~~f~~ 722 (983)
+...+|.+||++.|++.++..+...+.||||....... .+..|.|++.++|..
T Consensus 81 ----~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 81 ----KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred ----ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 00115779999999999999999999999999875443 234579999999974
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=145.13 Aligned_cols=107 Identities=31% Similarity=0.555 Sum_probs=90.7
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|...+..+.+||||+|.+.+ .+++|+++++++||.|||+|.|.+....++....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 3578999999999999999889999999999954 57899999999999999999998755333446789999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
.+..+ ++++||++.+++.+... .....||+|+
T Consensus 94 ~~~~~-~~~~iG~~~i~l~~~~~--~~~~~W~~L~ 125 (125)
T cd04031 94 YDRDG-ENDFLGEVVIDLADALL--DDEPHWYPLQ 125 (125)
T ss_pred CCCCC-CCcEeeEEEEecccccc--cCCcceEECc
Confidence 88775 89999999999998332 3346899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-15 Score=142.41 Aligned_cols=104 Identities=33% Similarity=0.427 Sum_probs=90.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC---EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVF 659 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~---~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~ 659 (983)
..|.|.|+|++|+||+.+ |. .|.+||||++.+.+ ...||+++++++||.|||.|.|.+... ...|.|+||
T Consensus 14 ~~~~L~V~v~~a~~L~~~---d~-~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~ 89 (124)
T cd08385 14 QSNQLTVGIIQAADLPAM---DM-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVY 89 (124)
T ss_pred CCCEEEEEEEEeeCCCCc---cC-CCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEE
Confidence 456899999999999765 55 78899999999853 577999999999999999999998642 358999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|++..+ +|++||++.++|+++..+...++|++|.
T Consensus 90 d~d~~~--------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 90 DFDRFS--------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eCCCCC--------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999887 6789999999999998888889999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=141.71 Aligned_cols=106 Identities=22% Similarity=0.327 Sum_probs=90.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecC-CCCCceEEEEEEeCCCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAE-SMPTEILEINLYNDKKT 83 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~-~l~~~~L~v~V~~~~~~ 83 (983)
..+.|+|+|++|++|. .|.+||||++++++++++|+++++++||.|||+|.|.+..+. .+....|.|.|||.+..
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4578999999999998 578999999999999999999999999999999999985432 23356899999988877
Q ss_pred CCCCCccEEEEEECccceec--CCeeeEEEEcee
Q 002002 84 GKRSTFLGKVKIAGSTFAKV--GSESSVYYPLEK 115 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~~--~~~~~~w~~L~~ 115 (983)
+ ++++||++.++++++... +.....||+|..
T Consensus 78 ~-~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 R-SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred c-cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 6 799999999999998732 345788999974
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=144.03 Aligned_cols=107 Identities=26% Similarity=0.429 Sum_probs=93.0
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC---CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD---GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
..+.|.|+|++|++|++++..|.+||||++.+. +..++|+++++++||.|||+|.|.+... .+....|.|.|||.+
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~-~l~~~~l~i~V~d~~ 92 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQ-ELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHH-HhCCCEEEEEEEECC
Confidence 457899999999999999999999999999993 3678999999999999999999998653 234578999999988
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
..+ ++++||++.++++++. .++..+.||+|.
T Consensus 93 ~~~-~~~~iG~~~i~l~~~~-~~~~~~~W~~l~ 123 (124)
T cd08387 93 QFS-RDECIGVVELPLAEVD-LSEKLDLWRKIQ 123 (124)
T ss_pred CCC-CCceeEEEEEeccccc-CCCCcceEEECc
Confidence 775 8999999999999997 345778999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=138.71 Aligned_cols=92 Identities=20% Similarity=0.292 Sum_probs=81.3
Q ss_pred cEEEEEEEEeeCCCCCCCC----CCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQ----GTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKK 82 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~----g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~ 82 (983)
+.|.|+|++|++|++.+.. +.+||||+|++++++++|+++++++||+|||+|.|.+.... ....|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~--~~~~L~~~V~D~d~ 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHE--KNFDIQFKVLDKDK 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCcc--CCCEEEEEEEECCC
Confidence 4799999999999987642 35899999999999999999999999999999999987543 14589999999888
Q ss_pred CCCCCCccEEEEEECccce
Q 002002 83 TGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~ 101 (983)
.+ +|++||++.++|+++.
T Consensus 79 ~~-~dd~IG~~~l~L~~l~ 96 (108)
T cd04039 79 FS-FNDYVATGSLSVQELL 96 (108)
T ss_pred CC-CCcceEEEEEEHHHHH
Confidence 86 8999999999999987
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=143.78 Aligned_cols=108 Identities=27% Similarity=0.387 Sum_probs=92.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC---CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD---GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
....|.|+|++|+||++++..|.+||||++.+. .++++|+++++ +||+|||+|.|.+.....+....|.|.||+.+
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 457899999999999999999999999998773 26889999888 99999999999843434556789999999988
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEcee
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEK 115 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 115 (983)
..+ ++++||++.|+|+.+. .+.....||+|++
T Consensus 93 ~~~-~~~~lG~~~i~L~~l~-~~~~~~~w~~L~p 124 (124)
T cd08389 93 RMR-KERLIGEKVVPLSQLN-LEGETTVWLTLEP 124 (124)
T ss_pred Ccc-cCceEEEEEEeccccC-CCCCceEEEeCCC
Confidence 876 8999999999999996 4577889999973
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-15 Score=143.68 Aligned_cols=107 Identities=24% Similarity=0.374 Sum_probs=92.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
....|.|+|++|+||++++..|.+||||++.+.+ .+++|+++++++||.|||+|.|.+... .+....|.|.|||.+
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~l~~~~l~~~V~d~d 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYS-ELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHH-HhCCCEEEEEEEeCC
Confidence 4578999999999999999999999999999843 578999999999999999999998652 233568999999988
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
.++ ++++||++.++++++. .+.....|++|+
T Consensus 93 ~~~-~~~~lG~~~i~l~~~~-~~~~~~~W~~l~ 123 (124)
T cd08385 93 RFS-KHDLIGEVRVPLLTVD-LGHVTEEWRDLE 123 (124)
T ss_pred CCC-CCceeEEEEEecCccc-CCCCcceEEEcc
Confidence 876 8899999999999986 467788999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=141.73 Aligned_cols=99 Identities=30% Similarity=0.453 Sum_probs=85.3
Q ss_pred EEEEEEEceeccccccccCCCCC-CCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEEEecC----CCEEEEEEE
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTR-GTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWDVYDP----CTVLTIGVF 659 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~-g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~v~~~----~~~l~i~v~ 659 (983)
|+|+|+|++|++|+.+ |. . |++||||++++. ....+|+++++++||+|||.|.|.+... ...|.|+||
T Consensus 1 G~L~V~v~~a~~L~~~---d~-~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~ 76 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DF-GTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLW 76 (111)
T ss_pred CEEEEEEEEeeCCCcc---cC-CCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEE
Confidence 7899999999999776 45 5 899999999984 3568999999999999999999988643 468999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|++..+ +|++||++.+++.+|... ..|+++.
T Consensus 77 d~d~~~--------~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 77 DSDRFT--------ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred eCCCCC--------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 999987 678999999999999744 4788765
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=141.25 Aligned_cols=104 Identities=23% Similarity=0.296 Sum_probs=87.0
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..+.|.|+|++|+||+++ |...|.+||||.+.+.+ .+.||+++.+++||+|||+|.|++... ...|.|.
T Consensus 13 ~~~~L~V~V~~a~nL~~~---d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 13 RTSCLEITIKACRNLAYG---DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred CCCEEEEEEEecCCCCcc---CCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 346899999999999876 33138899999999853 367999999999999999999998542 4589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccC---CCeEEEEEEe
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT---NRVYLNSYSL 700 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L 700 (983)
|||.+..+ ++++||++.|+|+++.. +....+||+|
T Consensus 90 V~~~~~~~--------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLK--------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCc--------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 99999877 67799999999999864 3356789987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=143.55 Aligned_cols=108 Identities=22% Similarity=0.385 Sum_probs=93.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE---CCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF---DGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
....|.|+|++|+||+..+..|.+||||++.+ ++++++|+++++++||.|||+|.|.+...+.+....|.++|||.+
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 45789999999999999998999999999999 347889999999999999999999864433334568999999988
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
..+ ++++||++.+++.++. .+.....|+.|.
T Consensus 94 ~~~-~~~~iG~~~i~l~~l~-~~~~~~~W~~l~ 124 (125)
T cd08386 94 RFS-RNDPIGEVSLPLNKVD-LTEEQTFWKDLK 124 (125)
T ss_pred CCc-CCcEeeEEEEeccccc-CCCCcceEEecC
Confidence 776 8899999999999987 466788999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=141.30 Aligned_cols=101 Identities=21% Similarity=0.294 Sum_probs=86.6
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec--CCCEEEEEEEe
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD--PCTVLTIGVFD 660 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~--~~~~l~i~v~D 660 (983)
|.|.|+|++|+||++++ .|.+||||.+.+.+ ...||+++.+++||.|||+|.|.+.. ....|.|+|||
T Consensus 12 ~~L~V~Vi~ar~L~~~~-----~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~ 86 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-----SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWN 86 (119)
T ss_pred CEEEEEEEEEECCCCCC-----CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEEC
Confidence 57999999999998763 57899999999864 46699999999999999999999854 23579999999
Q ss_pred CCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEe
Q 002002 661 NGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSL 700 (983)
Q Consensus 661 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 700 (983)
.+..+ .++++||.+.|+|.++..+.....||+|
T Consensus 87 ~~~~~-------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKS-------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCCc-------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 98765 1467999999999999888878999976
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=139.17 Aligned_cols=102 Identities=19% Similarity=0.285 Sum_probs=88.6
Q ss_pred cCEEEEEEEEeecCCCCCCCCcEEEEEEcCeeeeeeec--CC-CccceEEEEeecCC----CCCeEEEEEEcCCcCCccc
Q 002002 272 MPFLYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQ--AD-KDWDQVFAFDKEGL----NSTSLEVSVWSEEKKENEE 344 (983)
Q Consensus 272 ~~~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kTk~~--~~-P~Wne~f~f~~~~~----~~~~l~v~V~d~d~~~~d~ 344 (983)
...|+|+|++|++|. .|.+||||++++++++.+|+++ +. |.|||+|.|.+... ....|.|+|||++. +
T Consensus 3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~----~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS----L 77 (111)
T ss_pred cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc----c
Confidence 468999999999998 7889999999999999999998 77 99999999997543 35789999999874 6
Q ss_pred cCCceeEEEEEeccccCCCCCCCCCCCCceEEcccC
Q 002002 345 CTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESE 380 (983)
Q Consensus 345 ~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~ 380 (983)
++|++||++.++|+++... +++.+.++|++|.++
T Consensus 78 ~~~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccCCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 7899999999999999754 456788899999863
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-15 Score=136.87 Aligned_cols=102 Identities=23% Similarity=0.351 Sum_probs=90.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECCeEEEeeeeeeccCCCCCCCCcccceEEEEecCCCCCcEEEEEEeCc
Q 002002 429 LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVT 508 (983)
Q Consensus 429 L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D~d 508 (983)
|.|+|++|++|+.. +..+.+||||++++|+++.||+++. ++.||.|||.|.|.+..+..+.|.|+|+|.+
T Consensus 2 L~V~v~~A~~L~~~----~~~~~~dpyv~v~~~~~~~kT~v~~------~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~ 71 (105)
T cd04050 2 LFVYLDSAKNLPLA----KSTKEPSPYVELTVGKTTQKSKVKE------RTNNPVWEEGFTFLVRNPENQELEIEVKDDK 71 (105)
T ss_pred EEEEEeeecCCCCc----ccCCCCCcEEEEEECCEEEeCcccc------CCCCCcccceEEEEeCCCCCCEEEEEEEECC
Confidence 78999999999987 7778999999999999999999885 5899999999999999887889999999987
Q ss_pred CCceeEEEEEecccccccccCCCCCcceEEeccCC
Q 002002 509 NGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGD 543 (983)
Q Consensus 509 ~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~ 543 (983)
.+++||++.++|.++.... . ...+.||+|.+.
T Consensus 72 ~~~~iG~~~i~l~~l~~~~-~--~~~~~w~~L~~~ 103 (105)
T cd04050 72 TGKSLGSLTLPLSELLKEP-D--LTLDQPFPLDNS 103 (105)
T ss_pred CCCccEEEEEEHHHhhccc-c--ceeeeeEecCCC
Confidence 7889999999999998642 2 367899999764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-15 Score=140.26 Aligned_cols=104 Identities=26% Similarity=0.363 Sum_probs=88.1
Q ss_pred cEEEEEEEEeeCCCCCCCC-CCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQ-GTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKK 82 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~ 82 (983)
+.|.|+|++|++|+..|.. |.+||||+|.+.+ ..++|+++++++||.|||+|.|.+...+......|.|+|||.+.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 4799999999999999988 8999999999843 57899999999999999999998865422235789999999888
Q ss_pred CCCCCCccEEEEEECccceecCCeeeEEEEcee
Q 002002 83 TGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEK 115 (983)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 115 (983)
.+ +|++||++.+++.++. ....|+++..
T Consensus 81 ~~-~dd~lG~~~i~l~~l~----~~~~~~~~~~ 108 (111)
T cd04041 81 FT-ADDRLGRVEIDLKELI----EDRNWMGRRE 108 (111)
T ss_pred CC-CCCcceEEEEEHHHHh----cCCCCCcccc
Confidence 86 8999999999999987 3456777654
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-15 Score=141.33 Aligned_cols=118 Identities=24% Similarity=0.365 Sum_probs=99.5
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeE-EeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC-
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQR-RRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG- 84 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~- 84 (983)
..|.|.|++|++|++++ +|||.|.+++++ .||+++.++.||.|+|.|.|....+ ...|.|.||++++..
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~----~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP----VSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc----ccEEEEEEEEccCccc
Confidence 57999999999999875 799999999976 6999999999999999999976544 578999998654332
Q ss_pred C--CCCccEEEEEECccceecCCeeeEEEEceecCCcc--------eeeeEEEEEEEEec
Q 002002 85 K--RSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS--------QIKGEIGLKVYYID 134 (983)
Q Consensus 85 ~--~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s--------~~~G~l~l~i~~~~ 134 (983)
+ ++++||.+.||+..+. .+...+.||+|......+ ...|.|++++.|.+
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~-~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVS-SRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred cccCCcEEEEEEEEHHHhc-CCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 1 5789999999999998 678899999998887654 34479999999975
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-15 Score=140.51 Aligned_cols=102 Identities=24% Similarity=0.360 Sum_probs=85.5
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec----CCCEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD----PCTVLTI 656 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~----~~~~l~i 656 (983)
..|.|.|+|++|+||+.+ +. .+.+||||++.+.+ ...||+++++++||.|||+|.|.+.. ....|.|
T Consensus 14 ~~~~L~V~vi~a~~L~~~---~~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~ 89 (125)
T cd04031 14 VTSQLIVTVLQARDLPPR---DD-GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEV 89 (125)
T ss_pred CCCEEEEEEEEecCCCCc---CC-CCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEE
Confidence 346899999999999765 45 78899999999864 57799999999999999999999754 2458999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEccccc-CCCeEEEEEEee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD-TNRVYLNSYSLT 701 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~ 701 (983)
+|||++..+ .|++||++.++|++.. .+. .+||+|.
T Consensus 90 ~V~d~~~~~--------~~~~iG~~~i~l~~~~~~~~--~~W~~L~ 125 (125)
T cd04031 90 TVWDYDRDG--------ENDFLGEVVIDLADALLDDE--PHWYPLQ 125 (125)
T ss_pred EEEeCCCCC--------CCcEeeEEEEecccccccCC--cceEECc
Confidence 999999877 6789999999999832 333 6899873
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.1e-15 Score=140.29 Aligned_cols=104 Identities=24% Similarity=0.352 Sum_probs=89.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-----PKWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-----~~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..+.|.|+|++|+||+.+ |. .+.+||||++.+. ....||++++++.||+|||+|.|.+... ...|.|.
T Consensus 14 ~~~~L~V~vi~a~~L~~~---~~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~ 89 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPC---DS-SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVA 89 (127)
T ss_pred CCCEEEEEEEEEECCCCc---cC-CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEE
Confidence 346899999999999766 55 7899999999985 3678999999999999999999998542 3589999
Q ss_pred EEeCCCC--CCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 658 VFDNGRY--KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 658 v~D~d~~--~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|||++.. + +|++||.+.|+|.++..+.....||+|.
T Consensus 90 v~~~~~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 90 VKNSKSFLSR--------EKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred EEECCcccCC--------CCceEEEEEEecccccccCCccceEECc
Confidence 9999875 4 6789999999999998877778999873
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.5e-15 Score=140.08 Aligned_cols=104 Identities=23% Similarity=0.348 Sum_probs=89.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEEEec----CCCEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWDVYD----PCTVLTIGV 658 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~v~~----~~~~l~i~v 658 (983)
..+.|.|+|++|+||+.+ |. .|++||||.+.+. +...||+++++++||.|||.|.|.+.. ....|.++|
T Consensus 14 ~~~~L~v~v~~a~~L~~~---d~-~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v 89 (125)
T cd08386 14 QESTLTLKILKAVELPAK---DF-SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQV 89 (125)
T ss_pred CCCEEEEEEEEecCCCCc---cC-CCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEE
Confidence 346899999999999765 55 7889999999983 467899999999999999999998532 234799999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
||++..+ +|++||++.++++++..+.....||.|.
T Consensus 90 ~d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 90 LDYDRFS--------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EeCCCCc--------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999887 6789999999999999888889999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-15 Score=144.65 Aligned_cols=107 Identities=23% Similarity=0.361 Sum_probs=89.9
Q ss_pred EEEEEEEEeeCCCCCCCCC--------------CCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceE
Q 002002 8 KLIVEVCNAKNLMPKDGQG--------------TASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEIL 73 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g--------------~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L 73 (983)
.|.|+|++|++|+.+|..+ .+||||+|.+++++.+|+++++++||+|||+|.|.+..+.. ...|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPL--CERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCc--CCEE
Confidence 3789999999999988543 78999999999999999999999999999999999765421 5689
Q ss_pred EEEEEeCCCCCCCCCccEEEEEECccceecCC------eeeEEEEceecC
Q 002002 74 EINLYNDKKTGKRSTFLGKVKIAGSTFAKVGS------ESSVYYPLEKRS 117 (983)
Q Consensus 74 ~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~w~~L~~~~ 117 (983)
.|+|||.+..+ +|++||++.+++.++...+. ....|+.|....
T Consensus 79 ~~~v~D~d~~~-~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 79 KIQIRDWDRVG-NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEEEECCCCC-CCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 99999988876 89999999999999874332 245788886553
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-15 Score=147.46 Aligned_cols=110 Identities=21% Similarity=0.315 Sum_probs=92.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|+||++.+..|.+||||++.+. .++++|+++++++||.|||+|.|.+....++....|.|.|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 457899999999999999999999999999882 368899999999999999999998654333446689999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.+.++ ++++||++.+++..+... .....|+.|.+.
T Consensus 105 ~d~~~-~d~~lG~v~i~l~~~~~~-~~~~~w~~~~~~ 139 (162)
T cd04020 105 HDKLS-SNDFLGGVRLGLGTGKSY-GQAVDWMDSTGE 139 (162)
T ss_pred CCCCC-CCceEEEEEEeCCccccC-CCccccccCChH
Confidence 88875 799999999999998733 346788887644
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-15 Score=143.32 Aligned_cols=92 Identities=37% Similarity=0.588 Sum_probs=84.3
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKR 666 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~ 666 (983)
+|.|.|+|++|+||+.. | .+.+||||+++++++..+|+++++++||+|||+|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~---d--~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR---D--FTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS- 74 (145)
T ss_pred CeEEEEEEEeeECCCCC---C--CCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC-
Confidence 58999999999999765 3 37899999999999999999999999999999999999999889999999999988
Q ss_pred cCCCCCCCCceeEEEEEEcccccCC
Q 002002 667 DEAGKPGKDVRVGKIRVRLSTLDTN 691 (983)
Q Consensus 667 ~~~~~~~~d~~lG~~~i~l~~l~~~ 691 (983)
.|++||.+.+++.++...
T Consensus 75 -------~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 -------KDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred -------CCCEEEEEEEEHHHhhhh
Confidence 788999999999987643
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=140.25 Aligned_cols=117 Identities=22% Similarity=0.344 Sum_probs=95.9
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecC----------CCEEEEEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP----------CTVLTIGV 658 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~----------~~~l~i~v 658 (983)
.|+|+|++|++|+++ |. .|.+||||++.+++...||+++++|+||.|||.|.|.+... ...|.|+|
T Consensus 2 ~l~v~V~~a~~L~~~---d~-~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V 77 (135)
T cd04017 2 QLRAYIYQARDLLAA---DK-SGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL 77 (135)
T ss_pred EEEEEEEEeecCcCC---CC-CCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence 589999999999776 55 78999999999999999999999999999999999986432 24799999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEE-Eccccc---CCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRV-RLSTLD---TNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i-~l~~l~---~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
||++..+ +|++||++.+ ++..+. .+.....||+|... | ...|+|.+++.+.
T Consensus 78 ~d~d~~~--------~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~---~-~~~Geil~~~~~~ 132 (135)
T cd04017 78 FDQDSVG--------KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG---G-QSAGELLAAFELI 132 (135)
T ss_pred EeCcCCC--------CCccceEEEeeeeeecccCCCCCCCceEEEeecC---C-CchhheeEEeEEE
Confidence 9999987 7889999997 444443 24566799999632 3 3579999998774
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-15 Score=141.18 Aligned_cols=107 Identities=31% Similarity=0.465 Sum_probs=92.0
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
...|.|+|++|+||+..+..+.+||||++.+. ..+++|+++++++||.|||+|.|.+... .+....|.|.||+.
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~-~l~~~~l~i~v~~~ 93 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLE-ELKRRTLDVAVKNS 93 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHH-HhcCCEEEEEEEEC
Confidence 47899999999999999998999999999984 3688999999999999999999998653 33457899999987
Q ss_pred CCC-CCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 81 KKT-GKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 81 ~~~-~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
+.. .+++++||++.+++.++. .+.....||+|+
T Consensus 94 ~~~~~~~~~~iG~~~i~l~~l~-~~~~~~~W~~L~ 127 (127)
T cd04030 94 KSFLSREKKLLGQVLIDLSDLD-LSKGFTQWYDLT 127 (127)
T ss_pred CcccCCCCceEEEEEEeccccc-ccCCccceEECc
Confidence 765 237999999999999986 446778999984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-14 Score=136.92 Aligned_cols=104 Identities=26% Similarity=0.330 Sum_probs=85.5
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEE-Ee--c-CCCEEEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWD-VY--D-PCTVLTIGVF 659 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~-v~--~-~~~~l~i~v~ 659 (983)
.+.|.|+|++|+||+++ |...|.+||||++.+. .+..||+++++++||.|||+|.|. +. + ....|.|+||
T Consensus 15 ~~~L~V~Vi~a~~L~~~---~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 15 KKALLVNIIECRDLPAM---DEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred CCEEEEEEEEeECCCCC---CCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 45899999999999876 4413889999999985 356799999999999999999994 32 1 2347999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCC--CeEEEEEEee
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN--RVYLNSYSLT 701 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~ 701 (983)
|++..+ +|++||++.|+|+++..+ +....|.+|.
T Consensus 92 d~d~~~--------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRYS--------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCCC--------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 999887 788999999999998644 6778888764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=139.60 Aligned_cols=122 Identities=15% Similarity=0.215 Sum_probs=97.0
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCeEEEEEE----CC-eEEeeeCcCCCCCCeeeeEEEEEeeecC-----CCCCceEEEE
Q 002002 9 LIVEVCNAKN--LMPKDGQGTASAYVIVDF----DG-QRRRTKTKFRDLNPQWDERLEFLVHDAE-----SMPTEILEIN 76 (983)
Q Consensus 9 L~V~v~~a~~--L~~~d~~g~~dPyv~v~~----~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~-----~l~~~~L~v~ 76 (983)
..++|..|++ |+..+..|.+||||++++ ++ ++.+|+++++|+||+|||+|.|.+.... .+....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4567777777 778888889999999997 22 7999999999999999999999996532 2446789999
Q ss_pred EEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 77 LYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 77 V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
|||.+.+.++|++||++.++|+.+.. ......|++|.... ....|+|.+++..-
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~-~~~~~~~~~L~~~~--k~~Gg~l~v~ir~r 137 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLET-KCEIHESVDLMDGR--KATGGKLEVKVRLR 137 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccc-cCcceEEEEhhhCC--CCcCCEEEEEEEec
Confidence 99988875479999999999999873 33456699987432 24568999998764
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.1e-15 Score=138.28 Aligned_cols=95 Identities=27% Similarity=0.351 Sum_probs=83.6
Q ss_pred cCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEec--CCCEEEEEEEeC
Q 002002 584 KSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYD--PCTVLTIGVFDN 661 (983)
Q Consensus 584 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~--~~~~l~i~v~D~ 661 (983)
+..+|.|+|+|++|+||+. +. .|.+||||+++++++..||+++++++||+|||+|.|.... ....|.|+|||+
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~-~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~ 98 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DY-FTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDR 98 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----Cc-CCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeC
Confidence 3578999999999999952 45 7889999999999999999999999999999999998543 356999999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCC
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTN 691 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 691 (983)
+..+ +|++||++.++|.....+
T Consensus 99 d~~s--------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 99 DNGW--------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCCC--------CCCeeEEEEEEecCCcee
Confidence 9987 788999999999977644
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=139.41 Aligned_cols=117 Identities=25% Similarity=0.339 Sum_probs=92.6
Q ss_pred EEEEEceecc--ccccccCCCCCCCCCcEEEEEE--C---CEEEEeeeecCCCCCeeceEEEEEEecC---------CCE
Q 002002 590 LEVGIRGATN--LLPVKTKDGTRGTTDAYVVAKY--G---PKWVRTRTILDRFNPRWNEQYTWDVYDP---------CTV 653 (983)
Q Consensus 590 L~v~v~~a~~--L~~~~~~d~~~g~sDpy~~~~~--~---~~~~rT~~~~~t~nP~Wne~~~~~v~~~---------~~~ 653 (983)
.+++|..|.| |++. +. .+.+||||.+++ . ....||+++++|+||+|||+|.|.+... ...
T Consensus 4 ~el~i~~~~~~~l~~~---~~-~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~ 79 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WN-PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG 79 (155)
T ss_pred eEEEEEEeeccccCCC---cC-CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc
Confidence 3455666666 6554 34 678999999986 2 3689999999999999999999999654 247
Q ss_pred EEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee-cCCCCCccceEEEEEEEEE
Q 002002 654 LTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV-LLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 654 l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~-~~~~g~~~~G~l~l~~~f~ 721 (983)
|.|+|||++.+. .+|++||++.++|+.+..+.....|++|.. .++. .|.|++++|..
T Consensus 80 L~~~V~d~~~f~-------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~----Gg~l~v~ir~r 137 (155)
T cd08690 80 LKFEVYHKGGFL-------RSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKAT----GGKLEVKVRLR 137 (155)
T ss_pred EEEEEEeCCCcc-------cCCCeeEEEEEEcccccccCcceEEEEhhhCCCCc----CCEEEEEEEec
Confidence 999999999864 168899999999999987766678999873 3333 39999999885
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=137.56 Aligned_cols=104 Identities=22% Similarity=0.384 Sum_probs=88.5
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..|.|.|+|++|+||+.++ .. .|.+||||.+.+.+ ...+|+++++++||.|||+|.|.+... ...|.|+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~--~~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 12 KTGSLEVHIKECRNLAYAD--EK-KKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred CCCEEEEEEEEecCCCCcC--CC-CCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4578999999999997752 14 67899999998742 467999999999999999999998652 4589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEe
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSL 700 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 700 (983)
|||++..+ ++++||++.++|.++..+.....||+|
T Consensus 89 v~d~~~~~--------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFG--------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCc--------CCceeeEEEEecccccccCCCccEEEC
Confidence 99999887 678999999999999777767899986
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-14 Score=137.82 Aligned_cols=109 Identities=22% Similarity=0.276 Sum_probs=94.4
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCC-CCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFR-DLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
+.|.|+|++|++|+..+..+.+||||+++++++.++|++..+ +.||.|||+|.|.+..+.......|.|+|||.+...
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~- 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS- 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC-
Confidence 479999999999999988899999999999998889999875 899999999999997752112568999999988776
Q ss_pred CCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 86 RSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
++++||++.+++.++. .+.....|+.|.+.+
T Consensus 80 ~d~~iG~~~i~l~~l~-~~~~~~~~~~l~p~~ 110 (124)
T cd04049 80 DDDFIGEATIHLKGLF-EEGVEPGTAELVPAK 110 (124)
T ss_pred CCCeEEEEEEEhHHhh-hCCCCcCceEeeccc
Confidence 8999999999999998 445678999998864
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.7e-15 Score=139.99 Aligned_cols=113 Identities=28% Similarity=0.340 Sum_probs=95.3
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeec-CCCCCeeceEEEEEEecC-----CCEEEEEEEeC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTIL-DRFNPRWNEQYTWDVYDP-----CTVLTIGVFDN 661 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~-~t~nP~Wne~~~~~v~~~-----~~~l~i~v~D~ 661 (983)
.|+|+|++|++|+.. +. .+++||||++++++ ...+|+++. ++.||.|||.|.|.+.++ ...|.|+|||+
T Consensus 1 ~L~V~V~sA~~L~~~---~~-~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 1 TLEITIISAEDLKNV---NL-FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred CEEEEEEEcccCCCC---Cc-ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 388999999999654 55 78999999999988 889999986 589999999999999877 57999999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCCe-----EEEEEEeeecCCCCCccceEEEE
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV-----YLNSYSLTVLLPGGAKKMGEIEI 716 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~l~l 716 (983)
+.++ .|++||.+.++|.++..+.. ...||+|... .| +..|.|++
T Consensus 77 ~~~~--------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~--~g-~~~G~~~~ 125 (125)
T cd04051 77 RPSL--------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP--SG-KPQGVLNF 125 (125)
T ss_pred CCCC--------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC--CC-CcCeEEeC
Confidence 9876 67899999999999986543 4689999864 34 45798874
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-15 Score=139.81 Aligned_cols=118 Identities=20% Similarity=0.338 Sum_probs=97.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcC-CCCCCeeeeEEEEEeeecC-CCCCceEEEEEEeCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKF-RDLNPQWDERLEFLVHDAE-SMPTEILEINLYNDKKTG 84 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~-~t~nP~WnE~f~f~v~~~~-~l~~~~L~v~V~~~~~~~ 84 (983)
.|.|+|++|++|+..+..+.+||||+|++++ ++++|++.. ++.||.|||+|.|.+.... ......|.|+|||.+..+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3899999999999999889999999999988 899999975 5899999999999997641 012478999999887765
Q ss_pred CCCCccEEEEEECccceecCC----eeeEEEEceecCCcceeeeEEEE
Q 002002 85 KRSTFLGKVKIAGSTFAKVGS----ESSVYYPLEKRSVFSQIKGEIGL 128 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~----~~~~w~~L~~~~~~s~~~G~l~l 128 (983)
++++||++.+++.++..... ....||+|.+.++ +.+|+|++
T Consensus 81 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g--~~~G~~~~ 125 (125)
T cd04051 81 -GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG--KPQGVLNF 125 (125)
T ss_pred -CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC--CcCeEEeC
Confidence 89999999999999984333 3578999998663 46798864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=136.81 Aligned_cols=113 Identities=25% Similarity=0.340 Sum_probs=94.7
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECC---EEEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRY 664 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~---~~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~ 664 (983)
.|.|+|++|++|+.+ +. .|.+||||.+.+++ ...||+++.+++||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~~~V~v~~a~~L~~~---~~-~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~ 77 (126)
T cd04043 2 LFTIRIVRAENLKAD---SS-NGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFV 77 (126)
T ss_pred EEEEEEEEeECCCCC---CC-CCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCC
Confidence 588999999999765 55 78999999999864 467999999999999999999999774 46899999999987
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccC---CCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDT---NRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+ +|++||++.++|+++.. +.....|++|.. .|+|++.+.+.
T Consensus 78 ~--------~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--------~g~i~l~~~~~ 121 (126)
T cd04043 78 G--------KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--------QGRLLLRVSME 121 (126)
T ss_pred C--------CCceEEEEEEecCHHHcCCCCCCceEEEEcCC--------CCeEEEEEEEe
Confidence 6 68899999999987642 445578998862 48898888775
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=136.14 Aligned_cols=115 Identities=29% Similarity=0.458 Sum_probs=91.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECCe-EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ-RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
|.|+|++|++|+.. |.+||||.++++++ .++|+++++ .||.|||+|.|.+... .+....|.|.+|+.+... ++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~-~~~~~~l~i~v~d~~~~~-~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPP-DVTFFTLSFYNKDKRSKD-RD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCc-cccEEEEEEEEEecccCC-Ce
Confidence 78999999999976 78999999999984 579999989 9999999999999763 223567888899766553 56
Q ss_pred CccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
.++|.+.+. .+. .+.....||+|.+........|+|++.+.|
T Consensus 76 ~~~g~v~l~--~~~-~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVALS--KLD-LGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEEec--CcC-CCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 677765554 443 356678999999876655678999999865
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=138.62 Aligned_cols=106 Identities=28% Similarity=0.509 Sum_probs=91.1
Q ss_pred CCcEEEEEEEEeeCCCCCC-CCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKD-GQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
....|.|+|++|+||+..+ ..|.+||||++.+.. .+++|+++++++||.|||+|.|.+... ++....|.|.||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~-~l~~~~l~i~v~ 90 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS-QLETRTLQLSVW 90 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH-HhCCCEEEEEEE
Confidence 4578999999999999998 788999999998832 568999999999999999999998652 334578999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
|.+..+ ++++||++.+++.++. .+.....||+|
T Consensus 91 d~~~~~-~~~~iG~~~i~l~~l~-~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFG-RNTFLGEVEIPLDSWD-LDSQQSEWYPL 123 (123)
T ss_pred eCCCCc-CCceeeEEEEeccccc-ccCCCccEEEC
Confidence 888776 8899999999999986 45667899987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=169.95 Aligned_cols=105 Identities=19% Similarity=0.281 Sum_probs=93.5
Q ss_pred CCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccc
Q 002002 610 RGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL 688 (983)
Q Consensus 610 ~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l 688 (983)
.++|||||+|.+++. ..||+++++++||+|||+|.|.+.++.+.|+|+|||+|.++ . ++||++.|+|.+|
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g--------a-D~IG~a~IPL~~L 144 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG--------A-QIIGTAKIPVRDI 144 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC--------C-ceeEEEEEEHHHc
Confidence 458899999999875 66999999999999999999999999899999999999987 4 5999999999999
Q ss_pred cCCCeEEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 689 DTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 689 ~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
..|.....|++|.....+..+..|+|+++++|++.
T Consensus 145 ~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 145 ASGERISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred CCCCceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 99999999999998754444556899999999873
|
|
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=137.78 Aligned_cols=109 Identities=22% Similarity=0.337 Sum_probs=92.3
Q ss_pred CCCcEEEEEEEEeeCCCCCC-CCCCCCeEEEEEEC---CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 4 SCNRKLIVEVCNAKNLMPKD-GQGTASAYVIVDFD---GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
.....|.|+|++|++|+.++ ..|.+||||++.+. .+.++|+++++++||.|||+|.|.+... .+....|.|.|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~-~l~~~~l~i~v~d 89 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFK-ELQRRTLRLSVYD 89 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHH-HhcccEEEEEEEE
Confidence 34578999999999999998 68899999999983 3678899999999999999999998653 2234689999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEcee
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEK 115 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 115 (983)
.+..+ ++++||++.++++++. .......|++|++
T Consensus 90 ~~~~~-~~~~iG~~~i~L~~l~-~~~~~~~w~~L~~ 123 (123)
T cd08390 90 VDRFS-RHCIIGHVLFPLKDLD-LVKGGVVWRDLEP 123 (123)
T ss_pred CCcCC-CCcEEEEEEEecccee-cCCCceEEEeCCC
Confidence 88775 7899999999999988 3456679999974
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=140.84 Aligned_cols=94 Identities=24% Similarity=0.405 Sum_probs=81.4
Q ss_pred EEEEEceeccccccccC-----------CCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecC--CCEEEE
Q 002002 590 LEVGIRGATNLLPVKTK-----------DGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP--CTVLTI 656 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~-----------d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~--~~~l~i 656 (983)
|.|+|++|++|+.|+.. +. .+.+||||++.++++..||+++++++||+|||+|.|++..+ ...|.|
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~-~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEK-KELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCC-CCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 78999999999988521 11 35799999999999999999999999999999999998654 469999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCC
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNR 692 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 692 (983)
+|||+|..+ +|++||++.++++++....
T Consensus 81 ~v~D~d~~~--------~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 81 QIRDWDRVG--------NDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEECCCCC--------CCCEEEEEEEeHHHhccCC
Confidence 999999987 7889999999999986543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=143.21 Aligned_cols=105 Identities=24% Similarity=0.373 Sum_probs=88.8
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeeceEEEEEEecC----CCEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-----PKWVRTRTILDRFNPRWNEQYTWDVYDP----CTVLT 655 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-----~~~~rT~~~~~t~nP~Wne~~~~~v~~~----~~~l~ 655 (983)
...|.|.|+|++|+||+++ |. .|.+||||.+.+. ....||+++++++||.|||.|.|.+... ...|.
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~---d~-~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~ 99 (162)
T cd04020 24 PSTGELHVWVKEAKNLPAL---KS-GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLE 99 (162)
T ss_pred CCCceEEEEEEeeeCCCCC---CC-CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEE
Confidence 4689999999999999776 55 7899999999873 3578999999999999999999986432 34899
Q ss_pred EEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 656 IGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 656 i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|+|||++..+ +|++||++.+++.++.......+||.|.
T Consensus 100 i~V~d~d~~~--------~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 100 LTVWDHDKLS--------SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred EEEEeCCCCC--------CCceEEEEEEeCCccccCCCccccccCC
Confidence 9999999987 6889999999999987655557888665
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=138.13 Aligned_cols=103 Identities=26% Similarity=0.382 Sum_probs=91.4
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecC-CCCCeeceEEEEEEecC----CCEEEEEEEeCC
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILD-RFNPRWNEQYTWDVYDP----CTVLTIGVFDNG 662 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~-t~nP~Wne~~~~~v~~~----~~~l~i~v~D~d 662 (983)
|.|+|+|++|+||+.+ +. .+++||||++++++...+|+++.+ +.||.|||.|.|.+..+ ...|.|+|||.+
T Consensus 1 g~L~V~V~~A~~L~~~---~~-~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DF-LGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred CeEEEEEEecCCCCCC---CC-CCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 6899999999999655 55 789999999999998899999885 89999999999999887 568999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
..+ .|++||.+.+++.++..+.....||+|..
T Consensus 77 ~~~--------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 77 NFS--------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred cCC--------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 887 67899999999999987666788998874
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=136.79 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=88.0
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C----EEEEeeeecCCCCCeeceEEEEEEec---CCCEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P----KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLT 655 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~----~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~ 655 (983)
+..+.|.|+|++|+||+++ +. .|.+||||.+.+- . .+.||+++++++||+|||+|+|++.. ....|.
T Consensus 11 ~~~~~L~V~V~~arnL~~~---~~-~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 11 SGDSSLVISVEQLRNLSAL---SI-PENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCEEEEEEeEecCCccc---cc-CCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 4567899999999999876 44 7789999999973 2 47899999999999999999999864 346999
Q ss_pred EEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCC-CeEEEEEEe
Q 002002 656 IGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN-RVYLNSYSL 700 (983)
Q Consensus 656 i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 700 (983)
|+|||.+..+ ++++||.+.|+|+++... ....+||+|
T Consensus 87 ~~V~~~~~~~--------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ--------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC--------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999877 678999999999999544 456889875
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-14 Score=136.38 Aligned_cols=89 Identities=22% Similarity=0.440 Sum_probs=83.0
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR 86 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~ 86 (983)
+.|.|+|++|++|+..+. +++||||++++++++++|+++++++||.|||+|.|.+..+ ...|.|+|||.+.++ +
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~----~~~l~~~V~D~d~~~-~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP----MAPLKLEVFDKDTFS-K 75 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC----CCEEEEEEEECCCCC-C
Confidence 579999999999999887 8999999999999999999999999999999999999876 678999999988886 8
Q ss_pred CCccEEEEEECccce
Q 002002 87 STFLGKVKIAGSTFA 101 (983)
Q Consensus 87 d~~lG~~~i~l~~l~ 101 (983)
|++||++.+++..+.
T Consensus 76 dd~iG~a~i~l~~l~ 90 (145)
T cd04038 76 DDSMGEAEIDLEPLV 90 (145)
T ss_pred CCEEEEEEEEHHHhh
Confidence 999999999999876
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=133.97 Aligned_cols=113 Identities=27% Similarity=0.431 Sum_probs=96.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
|+|+|++|++|+..+..|.+||||++.+++ +.++|+++.++.||.|||+|.|.+.... ...|.|+|||.+..+ ++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~---~~~l~~~v~d~~~~~-~~ 76 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRV---RAVLKVEVYDWDRGG-KD 76 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCC---CCEEEEEEEeCCCCC-CC
Confidence 579999999999999889999999999976 5689999999999999999999987642 678999999888775 89
Q ss_pred CccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEE
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGL 128 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l 128 (983)
++||++.+++.++. .+.....|++|.+++.. ..|.|.+
T Consensus 77 ~~iG~~~~~l~~l~-~~~~~~~~~~L~~~g~~--~~~~~~~ 114 (115)
T cd04040 77 DLLGSAYIDLSDLE-PEETTELTLPLDGQGGG--KLGAVFL 114 (115)
T ss_pred CceEEEEEEHHHcC-CCCcEEEEEECcCCCCc--cCceEEc
Confidence 99999999999987 55678999999877543 3466653
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=139.67 Aligned_cols=106 Identities=26% Similarity=0.448 Sum_probs=92.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEEC----CeEEeeeCcCCCCCCeeeeEEEEEeeec------------CCCCCce
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFD----GQRRRTKTKFRDLNPQWDERLEFLVHDA------------ESMPTEI 72 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~~~~t~nP~WnE~f~f~v~~~------------~~l~~~~ 72 (983)
|.|+|++|++|+.+ ..|.+||||+|.++ +++++|+++.++.||.|||+|.|.+... .++....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 67999999999998 78899999999998 6889999999999999999999998764 2334678
Q ss_pred EEEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 73 LEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 73 L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
|.|+|||.+..+ +++|||++.+++..+. .......||+|.+++
T Consensus 80 l~i~V~d~~~~~-~~~~IG~~~i~l~~l~-~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVS-GDDFLGEVRIPLQGLQ-QAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCc-CCcEEEEEEEehhhcc-CCCcccceEecCCcC
Confidence 999999888775 8999999999999987 445678999998874
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-14 Score=134.20 Aligned_cols=117 Identities=25% Similarity=0.369 Sum_probs=96.9
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCe-EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ-RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
..|.|+|++|+ |...+..+.+||||+++++++ .++|+++++++||.|||+|.|.+.. ...|.|+|||.+..+
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-----~~~l~~~V~d~~~~~- 74 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-----QSTLEFKVWSHHTLK- 74 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-----CCEEEEEEEeCCCCC-
Confidence 47999999998 666666889999999999987 8999999999999999999999853 578999999988775
Q ss_pred CCCccEEEEEECccceec--CCe--eeEEEEceecCC-cceeeeEEEEEE
Q 002002 86 RSTFLGKVKIAGSTFAKV--GSE--SSVYYPLEKRSV-FSQIKGEIGLKV 130 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~--~~~--~~~w~~L~~~~~-~s~~~G~l~l~i 130 (983)
.+++||++.+++.++... +.. ...|++|.+.+. .....|+|.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 899999999999998732 222 335899987763 346789998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=135.15 Aligned_cols=103 Identities=29% Similarity=0.371 Sum_probs=90.9
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCC
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKR 666 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~ 666 (983)
|.|+|+|++|++|+.. +. .|.+||||++.+++ ...+|+++.++.||.|||.|.|++..+...|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~---d~-~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EG-VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cC-CCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC-
Confidence 7899999999999655 55 78999999999976 578999999999999999999999888789999999999887
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 667 DEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 667 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
+|++||++.++|.++..+ ....||-|.+.
T Consensus 76 -------~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 -------KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred -------CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 688999999999999876 34788877754
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=134.19 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=89.4
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVF 659 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~ 659 (983)
..+.|.|+|++|+||+.++. . .|.+||||.+++. ....+|+++++++||.|||.|.|.+... ...|.|.||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~--~-~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTK--D-VAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCEEEEEEEEecCCCCccC--C-CCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 45689999999999976521 3 6789999999984 3567999999999999999999998653 358999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|++..+ +|++||++.++|+++........|++|.
T Consensus 89 d~~~~~--------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS--------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC--------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 999876 6789999999999998877778999885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=140.05 Aligned_cols=101 Identities=28% Similarity=0.456 Sum_probs=87.2
Q ss_pred cCCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----------------------------eEEeeeCcCCCCCCe
Q 002002 3 ESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----------------------------QRRRTKTKFRDLNPQ 53 (983)
Q Consensus 3 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----------------------------~~~~T~~~~~t~nP~ 53 (983)
+.+.+.|.|+|++|++|.++|..|.+||||+|.+.. +.++|+++++++||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 356789999999999999999999999999999853 237899999999999
Q ss_pred eeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 54 WDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 54 WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
|||+|.|.+.... ...|.|+|||.+ ++|||++.++++++. . ...+.||+|
T Consensus 104 WnE~F~f~v~~~~---~~~L~i~V~D~d-----d~~IG~v~i~l~~l~-~-~~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDVS---NDQLHLDIWDHD-----DDFLGCVNIPLKDLP-S-CGLDSWFKL 153 (153)
T ss_pred cccEEEEEeccCC---CCEEEEEEEecC-----CCeEEEEEEEHHHhC-C-CCCCCeEeC
Confidence 9999999996542 678999999765 789999999999987 2 346899987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-14 Score=134.81 Aligned_cols=94 Identities=23% Similarity=0.369 Sum_probs=82.0
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT 83 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~ 83 (983)
.+.+.|.|+|++|++|.. +..|.+||||+|.+++++++|+++++++||+|||+|.|...... ....|.|+|||.+..
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d~~ 101 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDRDNG 101 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeCCCC
Confidence 456899999999999984 67788999999999999999999999999999999999753321 267999999998887
Q ss_pred CCCCCccEEEEEECccce
Q 002002 84 GKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~ 101 (983)
+ +|++||++.+++....
T Consensus 102 s-~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 102 W-DDDLLGTCSVVPEAGV 118 (127)
T ss_pred C-CCCeeEEEEEEecCCc
Confidence 6 8999999999999765
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-14 Score=132.70 Aligned_cols=112 Identities=30% Similarity=0.419 Sum_probs=94.5
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCCCc
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~~~ 667 (983)
|+|+|++|++|+.. +. .|.+||||++.+++ ...+|+++.++.||.|||.|.|.+.+. ...+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~---~~-~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~-- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DR-NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG-- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CC-CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC--
Confidence 57899999999765 45 78899999999965 567999999999999999999999764 568999999999876
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEE
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEI 716 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l 716 (983)
+|++||++.+++.++..+..+..|++|... |..+.|.|.+
T Consensus 75 ------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---g~~~~~~~~~ 114 (115)
T cd04040 75 ------KDDLLGSAYIDLSDLEPEETTELTLPLDGQ---GGGKLGAVFL 114 (115)
T ss_pred ------CCCceEEEEEEHHHcCCCCcEEEEEECcCC---CCccCceEEc
Confidence 688999999999999988888999998743 3344576643
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.9e-14 Score=132.78 Aligned_cols=112 Identities=27% Similarity=0.441 Sum_probs=88.3
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEEeCCCCC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVFDNGRYK 665 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~D~d~~~ 665 (983)
|.|+|++|+||+.+ |.+||||++++++ ++.+|+++.+ .||.|||+|.|.+... ...|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~-------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 2 LRLRILEAKNLPSK-------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD 73 (117)
T ss_pred eEEEEEEecCCCcC-------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC
Confidence 78999999999642 6799999999987 4689999999 9999999999999763 347888888887654
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
.+..+|++.|. .+..+.....||+|......+ +..|+|+++++|
T Consensus 74 --------~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 74 --------RDIVIGKVALS--KLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred --------CeeEEEEEEec--CcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 56677766554 455566678999998764433 457999999976
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-14 Score=133.08 Aligned_cols=103 Identities=21% Similarity=0.218 Sum_probs=87.4
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEE-Eec---CCCEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWD-VYD---PCTVLTIGV 658 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~-v~~---~~~~l~i~v 658 (983)
..+.|.|+|++|+||+++ +. .|.+||||.+.+. ....||++.++ .||+|||+|.|+ +.. ....|.+.|
T Consensus 14 ~~~~L~V~Vi~a~nL~~~---~~-~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 14 SARKLTVTVIRAQDIPTK---DR-GGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred CCCEEEEEEEEecCCCch---hc-CCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 345799999999999876 45 7889999998763 25779999888 999999999998 532 245899999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
||++..+ ++++||++.|+|+++..+.....||+|.
T Consensus 89 ~~~~~~~--------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 89 YGVERMR--------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EECCCcc--------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999887 6789999999999998888889999885
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-15 Score=140.70 Aligned_cols=107 Identities=24% Similarity=0.351 Sum_probs=89.0
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
....|.|+|++|+||++.+..|.+||||++++.. .+++|+++++++||+|||+|.|.+... .+....|.|.||+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~-~l~~~~l~~~V~~ 91 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI-VLQDLSLRVTVAE 91 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH-HhCCcEEEEEEEe
Confidence 3468999999999999999999999999999932 367899999999999999999998663 4567899999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.+.++ ++++||++.+.... .++....|..+...
T Consensus 92 ~d~~~-~~~~iG~v~lg~~~---~g~~~~hW~~ml~~ 124 (136)
T cd08406 92 STEDG-KTPNVGHVIIGPAA---SGMGLSHWNQMLAS 124 (136)
T ss_pred CCCCC-CCCeeEEEEECCCC---CChhHHHHHHHHHC
Confidence 88876 89999999997653 34556677665443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-15 Score=158.57 Aligned_cols=107 Identities=28% Similarity=0.486 Sum_probs=95.7
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
....|.|+|.+|+||.++|.+|.+||||.+.+- .-+++|++++.++||+|||+|.|.+...+. +..|.|+|||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk--drRlsiEvWD 255 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK--DRRLSIEVWD 255 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc--cceeEEEEec
Confidence 456899999999999999999999999999992 257889999999999999999999976554 7789999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.|+++ ++||+|...+.++++.+ ...+.||.|...
T Consensus 256 WDrTs-RNDFMGslSFgisEl~K--~p~~GWyKlLsq 289 (683)
T KOG0696|consen 256 WDRTS-RNDFMGSLSFGISELQK--APVDGWYKLLSQ 289 (683)
T ss_pred ccccc-cccccceecccHHHHhh--cchhhHHHHhhh
Confidence 99997 99999999999999974 567889999866
|
|
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-14 Score=131.71 Aligned_cols=104 Identities=28% Similarity=0.376 Sum_probs=91.2
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
+.|.|+|++|++|+..+..|.+||||++.+++ ..++|+++.++.||.|||+|.|.+... ...|.|+|||.+..+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~----~~~L~v~v~d~~~~~- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP----NQKITLEVMDYEKVG- 75 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC----CCEEEEEEEECCCCC-
Confidence 46899999999999999889999999999987 678999999999999999999998765 578999999888775
Q ss_pred CCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 86 RSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
+|++||++.+++.++... ....||.|.+.+
T Consensus 76 ~d~~IG~~~~~l~~l~~~--~~~~~~~~~~~~ 105 (120)
T cd04045 76 KDRSLGSVEINVSDLIKK--NEDGKYVEYDDE 105 (120)
T ss_pred CCCeeeEEEEeHHHhhCC--CCCceEEecCCC
Confidence 889999999999999843 457788877654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-14 Score=160.28 Aligned_cols=122 Identities=30% Similarity=0.566 Sum_probs=110.4
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC---
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT--- 83 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~--- 83 (983)
.++.++|++|++|.++|..|++||||.+.++..+.||+++...+||+|||.|.|...+. ...+++.|||.++-
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns----tdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS----TDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC----CceeEEEEecCcccHHH
Confidence 57899999999999999999999999999999999999999999999999999999987 78999999987653
Q ss_pred -------CCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecC
Q 002002 84 -------GKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 84 -------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~ 135 (983)
..+|+|||+..|.+..+. ...+.||.|+++..+|.+.|.|+|.|...-.
T Consensus 371 klrqkl~resddflgqtvievrtls---gemdvwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEecc---cchhhhcchhhccchhhccceEEEEEEEEEc
Confidence 236899999999988876 5788999999999999999999998877543
|
|
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.2e-14 Score=134.17 Aligned_cols=92 Identities=23% Similarity=0.282 Sum_probs=80.2
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-------CEEEEeeeecCCCCCeeceEEEEEEecC-----CCEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-------PKWVRTRTILDRFNPRWNEQYTWDVYDP-----CTVL 654 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-------~~~~rT~~~~~t~nP~Wne~~~~~v~~~-----~~~l 654 (983)
.+.|.|+|++|++|+.+ +. .|.+||||++++. ....||+++++|+||+|||+|.|++... ...|
T Consensus 15 ~~~L~V~Vi~A~~L~~~---~~-~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 15 EQSLRVEILNARNLLPL---DS-NGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred CCEEEEEEEEeeCCCCc---CC-CCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 45799999999999765 45 7899999999985 2478999999999999999999998653 3489
Q ss_pred EEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccC
Q 002002 655 TIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT 690 (983)
Q Consensus 655 ~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 690 (983)
.|+|||++..+ +|++||++.++|++|..
T Consensus 91 ~~~V~d~d~~~--------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 91 LFTVKDYDLLG--------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEEecCCCC--------CCcEeEEEEEeHHHCCc
Confidence 99999999887 78899999999999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=129.88 Aligned_cols=99 Identities=23% Similarity=0.275 Sum_probs=83.6
Q ss_pred CCCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCC-CEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcc
Q 002002 609 TRGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLS 686 (983)
Q Consensus 609 ~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~ 686 (983)
..|++||||++.++++ ..+|+++.++.||.|||.|.|.+.++. ..|.|.|||++..+ |++||++.++|+
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~---------d~~iG~~~v~L~ 79 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRH---------DPVLGSVSISLN 79 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCC---------CCeEEEEEecHH
Confidence 3889999999999874 679999999999999999999998764 68999999999763 669999999999
Q ss_pred cccC-CCeEEEEEEeeecCCCCCccceEEEEEEEEEe
Q 002002 687 TLDT-NRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTC 722 (983)
Q Consensus 687 ~l~~-~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~ 722 (983)
++.. +.....||+|.. ++.|+|++++.|++
T Consensus 80 ~l~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 80 DLIDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred HHHhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 9853 344578999873 24699999999863
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-14 Score=135.63 Aligned_cols=105 Identities=25% Similarity=0.377 Sum_probs=87.0
Q ss_pred CCcEEEEEEEEeeCCCCCC--CCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKD--GQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINL 77 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V 77 (983)
..+.|.|.|++|+||.++| ..+.+||||+|++.. .+++|+++++++||+|||+|.|.+.. +.+....|.|+|
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~-~~L~~~~L~~~V 91 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPS-ELLAASSVELEV 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCH-HHhCccEEEEEE
Confidence 4578999999999999998 335599999999843 36789999999999999999999875 355678899999
Q ss_pred EeCCCCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 78 YNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 78 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
||.+.++ ++++||++.+++.. .|+....|..+.
T Consensus 92 ~d~d~~~-~~d~iG~v~lg~~~---~g~~~~hW~~ml 124 (138)
T cd08407 92 LNQDSPG-QSLPLGRCSLGLHT---SGTERQHWEEML 124 (138)
T ss_pred EeCCCCc-CcceeceEEecCcC---CCcHHHHHHHHH
Confidence 9998886 89999999999875 345556666553
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.8e-14 Score=136.00 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=90.2
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEEC----CEEEEeeeecCCCCCeeceEEEEEEecC---------------
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG----PKWVRTRTILDRFNPRWNEQYTWDVYDP--------------- 650 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~----~~~~rT~~~~~t~nP~Wne~~~~~v~~~--------------- 650 (983)
|.|.|++|++|+.+ . .|.+||||.++++ +...+|+++.++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~----~-~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~ 75 (137)
T cd08675 1 LSVRVLECRDLALK----S-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDL 75 (137)
T ss_pred CEEEEEEccCCCcc----c-CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccc
Confidence 57899999999654 2 6889999999998 6789999999999999999999999765
Q ss_pred -CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCC
Q 002002 651 -CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLP 705 (983)
Q Consensus 651 -~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 705 (983)
...|.|+|||++..+ .+++||++.++|.++........||+|.....
T Consensus 76 ~~~~l~i~V~d~~~~~--------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 76 EKSELRVELWHASMVS--------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred cccEEEEEEEcCCcCc--------CCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 348999999999876 67899999999999987767789999987653
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=129.98 Aligned_cols=116 Identities=25% Similarity=0.341 Sum_probs=92.8
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCc
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~ 667 (983)
.|.|+|++|+ |... +. .+++||||.+++++. ..+|+++.+++||.|||.|.|.+. ....|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~---~~-~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~-- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SK-SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK-- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---Cc-CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC--
Confidence 5899999998 5332 34 678999999999886 899999999999999999999985 4579999999999987
Q ss_pred CCCCCCCCceeEEEEEEcccccCCCe-----EEEEEEeeecCCCCCccceEEEEEE
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLDTNRV-----YLNSYSLTVLLPGGAKKMGEIEIAV 718 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~l~l~~ 718 (983)
.|++||++.++|.++..+.. +..|++|........+..|.|++.+
T Consensus 75 ------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ------ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ------CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 68899999999999874321 3457888754321224579998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-14 Score=134.60 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=84.2
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTI 656 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i 656 (983)
+..|.|.|.|++|+||.+++.. . .+.+||||++.+.. ++.||+++++++||+|||.|.|.+... ...|.|
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~-~-~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~ 89 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLK-L-LLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL 89 (138)
T ss_pred CCCCeEEEEEEEecCCCccccC-C-CCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence 3457899999999999887421 2 34589999999854 356999999999999999999998642 458999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
+|||+|..+ ++++||++.+.+.. .|...+||..+.
T Consensus 90 ~V~d~d~~~--------~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 90 EVLNQDSPG--------QSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred EEEeCCCCc--------CcceeceEEecCcC--CCcHHHHHHHHH
Confidence 999999988 77899999999975 454456776544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-13 Score=129.82 Aligned_cols=118 Identities=26% Similarity=0.291 Sum_probs=91.7
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECC-------------EEEEeeeecCCCCCee-ceEEEEEEecCCCEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-------------KWVRTRTILDRFNPRW-NEQYTWDVYDPCTVL 654 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-------------~~~rT~~~~~t~nP~W-ne~~~~~v~~~~~~l 654 (983)
.+.|.+++|+||+ +|. .|++||||.+.+.+ +..+|+++++++||+| ||+|.|.+. ....|
T Consensus 2 ~~~~~~~~A~~L~----~~~-fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK----KGM-FFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVL 75 (137)
T ss_pred EEEEEEEEeCCCC----Ccc-CCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEE
Confidence 4678999999994 356 79999999999842 3689999999999999 999999985 45689
Q ss_pred EEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCC---eEEEEEEeeecCCCCCccceEEEEEE
Q 002002 655 TIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNR---VYLNSYSLTVLLPGGAKKMGEIEIAV 718 (983)
Q Consensus 655 ~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~g~~~~G~l~l~~ 718 (983)
.|+|||++..+. ...|++||++.|++++|..+. ....||+|......+ ..+|+|.+.+
T Consensus 76 ~v~V~D~~~~~~-----~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSR-----PIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCC-----ccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEEEEEe
Confidence 999999875431 002679999999999997542 356788887543332 4569998875
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-14 Score=166.08 Aligned_cols=382 Identities=17% Similarity=0.186 Sum_probs=229.1
Q ss_pred CEEEEEEEEeecCCCC---CCCCcEEEEEEcCeeeeeeec--CC-CccceEEEEeecCCC---------CCeEEEEEEcC
Q 002002 273 PFLYVRVLKAKRAGNV---SNGSLYAKLVIGTHSIKTKSQ--AD-KDWDQVFAFDKEGLN---------STSLEVSVWSE 337 (983)
Q Consensus 273 ~~L~V~v~~a~~L~~~---~~~dPyv~v~~~~~~~kTk~~--~~-P~Wne~f~f~~~~~~---------~~~l~v~V~d~ 337 (983)
..+++.|.+|+.|..+ +-+|||+.+.+-++...|.++ ++ |.||++..|...++. -..+.++|+|.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 4588999999999854 468999999999999999999 88 999999999865443 23577899998
Q ss_pred CcCCccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccCCCCCceEEEEEEeccCcchhhhhhcccCCCCCCcccc
Q 002002 338 EKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQADEAFQEAWQSDSGGLIPETR 417 (983)
Q Consensus 338 d~~~~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~~~~~g~i~l~~~~g~~~de~~~~~~~s~~~~~~~~~~ 417 (983)
+. .+.++++|.......=... ++ +-.|+++..++...|++.++.-.-.+.- +-.|..+.... ....
T Consensus 286 dr----~g~~ef~gr~~~~p~V~~~--~p----~lkw~p~~rg~~l~gd~l~a~eliq~~~---~i~~p~~~~~~-~~~~ 351 (1105)
T KOG1326|consen 286 DR----SGINEFKGRKKQRPYVMVQ--CP----ALKWVPTMRGAFLDGDVLIAAELIQIGK---PIPQPPPQREI-IFSL 351 (1105)
T ss_pred hh----hchHHhhcccccceEEEec--CC----ccceEEeecccccccchhHHHHHHhhcC---CCCCCCccccc-ceec
Confidence 85 6899999998765542221 22 2389999888777788766542100000 11111110000 0000
Q ss_pred cccccCCceEEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECCeEEEeeeeeeccCCCCCCCCcccceEEEE-ecCC-
Q 002002 418 AKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDLVFV-AAEP- 495 (983)
Q Consensus 418 ~~~~~~p~l~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~~~~rT~~~~~~~~~~~t~nP~wne~f~f~-~~~~- 495 (983)
-.....|.+..-.++|. +.+|..++. ........|-+.+.+|++...+..+. +.-.||.+...+.+- +.-|
T Consensus 352 vp~~iRp~~q~~~~evl-~wgLrn~k~-~~m~~~~~P~~~~e~g~e~v~s~~I~-----~~k~npnf~s~~~~~~v~lpd 424 (1105)
T KOG1326|consen 352 VPKKIRPKTQIGKAELL-MWGLRNPKK-SGMASTFSPALLVEFGGERVSSFSIF-----NRKKNPNFPSRVLGRLVILPD 424 (1105)
T ss_pred cccCCCcceeeeeeehh-hhhhccccc-ccccccCCcceeEeeCCceEeeeeeh-----hhhhCCCCceeEEEEEEeccc
Confidence 00112344433333332 334443210 02234457888888899999998885 356789888765442 2222
Q ss_pred ---CCCcEEEEEEeCc---CCceeEEEEEeccc-c----------cccc------------cCC-CCCcceEEec-----
Q 002002 496 ---FEPFLVVTVEDVT---NGCSVGHARIQMST-V----------ERRI------------DDR-AEPKSRWFNL----- 540 (983)
Q Consensus 496 ---~~~~L~i~V~D~d---~d~~lG~~~i~L~~-l----------~~~~------------~~~-~~~~~~w~~L----- 540 (983)
....+.+.|.|.+ ....+|.|.|+-.. + .... +.. ....+.|+..
T Consensus 425 ~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 504 (1105)
T KOG1326|consen 425 EELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLPASPHED 504 (1105)
T ss_pred hHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCCCCcccc
Confidence 2457899999877 67888988775321 0 0000 000 0001111111
Q ss_pred ------------cCCCCCC-------cceEEEEEEEE---e-------------------cccc--cccccc--------
Q 002002 541 ------------VGDETRP-------YAGRIHLRACL---E-------------------GGYH--VLDEAA-------- 569 (983)
Q Consensus 541 ------------~~~~~~~-------~~G~l~l~i~l---~-------------------g~~~--v~~~~~-------- 569 (983)
....+.. .++...|.|+- + |... ..++..
T Consensus 505 ~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~ 584 (1105)
T KOG1326|consen 505 EEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIVGEFKGLF 584 (1105)
T ss_pred ccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCcccchhhhhhcce
Confidence 1100000 11112222220 0 0000 000000
Q ss_pred -------ccCCchhHHH-Hhhc--cCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEE--EEeeeecCCCCC
Q 002002 570 -------HVTSDVRAAA-KQLA--KSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW--VRTRTILDRFNP 637 (983)
Q Consensus 570 -------~~~~d~~~~~-~~l~--~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~--~rT~~~~~t~nP 637 (983)
..+++..|.. ..+. .+-.-.++|.|++|.+|.+. |. +|++|||+.+.+|.+. -+++.+.+|+||
T Consensus 585 rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~-ng~adpYv~l~lGk~~~~d~~~yip~tlnP 660 (1105)
T KOG1326|consen 585 RIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DG-NGDADPYVKLLLGKKRTLDRAHYIPNTLNP 660 (1105)
T ss_pred eeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CC-CCCcCceeeeeeccchhhhhhhcCcCCCCc
Confidence 0000101110 0111 12344678999999999665 77 9999999999999876 477889999999
Q ss_pred eeceEEEEEEecCCC-EEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEccc
Q 002002 638 RWNEQYTWDVYDPCT-VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 638 ~Wne~~~~~v~~~~~-~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~ 687 (983)
++.+.|++....|.. .++++|||+|..+ .|+.||...|.|..
T Consensus 661 Vfgkmfel~~~lp~ek~l~v~vyd~D~~~--------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 661 VFGKMFELECLLPFEKDLIVEVYDHDLEA--------QDEKIGETTIDLEN 703 (1105)
T ss_pred HHHHHHHhhcccchhhcceeEEEEeeccc--------ccchhhceehhhhh
Confidence 999999999887754 8999999999988 78899999998865
|
|
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.4e-14 Score=129.52 Aligned_cols=101 Identities=24% Similarity=0.421 Sum_probs=85.9
Q ss_pred CCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECcccee
Q 002002 24 GQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAK 102 (983)
Q Consensus 24 ~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~ 102 (983)
.+|.+||||.+.+++ ..++|++++++.||.|||+|.|.+.+.. ...|.|.|||.+.. ++++||++.++|+++..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~--~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR---KSRVTVVVKDDRDR--HDPVLGSVSISLNDLID 83 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC---CCEEEEEEEECCCC--CCCeEEEEEecHHHHHh
Confidence 468899999999988 4679999999999999999999997642 57899999987766 78999999999999874
Q ss_pred cCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 103 VGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 103 ~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
.+.....||+|.+. ..|+|++++.|.+
T Consensus 84 ~~~~~~~w~~L~~~-----~~G~i~~~~~~~p 110 (111)
T cd04052 84 ATSVGQQWFPLSGN-----GQGRIRISALWKP 110 (111)
T ss_pred hhhccceeEECCCC-----CCCEEEEEEEEec
Confidence 44557899999852 3599999999874
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.8e-14 Score=179.66 Aligned_cols=121 Identities=26% Similarity=0.453 Sum_probs=105.6
Q ss_pred hccCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecCC--CEEEEEE
Q 002002 582 LAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDPC--TVLTIGV 658 (983)
Q Consensus 582 l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~~--~~l~i~v 658 (983)
|+....|.|.|+|++|+||. . + .|++||||++.+|+ ...||++++++.||+|||+|+|.+.+|. ..|+|+|
T Consensus 1974 ~~~~~~G~L~V~V~~a~nl~-~---~--~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev 2047 (2102)
T PLN03200 1974 LLQCLPGSLTVTIKRGNNLK-Q---S--MGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISC 2047 (2102)
T ss_pred HHhhCCcceEEEEeeccccc-c---c--cCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEE
Confidence 44567999999999999995 2 2 78999999999996 4889999999999999999999998876 6899999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceE---EEEEEEEE
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGE---IEIAVRFT 721 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---l~l~~~f~ 721 (983)
||+|.++ +| .||++.|++.++..+..|..||+|... | +|.|. |+++++|+
T Consensus 2048 ~d~d~f~--------kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2048 KSKNTFG--------KS-SLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred EecCccC--------CC-CCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEec
Confidence 9999987 56 899999999999999999999999843 2 34577 99999885
|
|
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-14 Score=137.30 Aligned_cols=107 Identities=20% Similarity=0.390 Sum_probs=90.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|++.|..|.+||||++.+.+ .+++|+++++++||.|||+|.|.+... ++....|.|+|||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~-~l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS-DLAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHH-HhCCCEEEEEEEe
Confidence 3578999999999999999999999999999842 578999999999999999999998753 2345789999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.+..+ ++++||++.+++.. .++....|+.+.+.
T Consensus 90 ~d~~~-~~~~lG~~~i~l~~---~~~~~~~W~~~l~~ 122 (133)
T cd08384 90 KDIGK-SNDYIGGLQLGINA---KGERLRHWLDCLKN 122 (133)
T ss_pred CCCCC-CccEEEEEEEecCC---CCchHHHHHHHHhC
Confidence 87765 88999999999985 44566789887654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=133.22 Aligned_cols=102 Identities=21% Similarity=0.313 Sum_probs=87.6
Q ss_pred cCCceEEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECC-----------------------------eEEEeeeeee
Q 002002 422 LSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGA-----------------------------QLFKTGRTSV 472 (983)
Q Consensus 422 ~~p~l~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~-----------------------------~~~rT~~~~~ 472 (983)
..|..+.|+|+|++|++|..+ |..|.+||||++.++. +..+|+++.
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~----d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~- 97 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAK----DVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP- 97 (153)
T ss_pred cCCCeEEEEEEEEeccCCccc----CCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec-
Confidence 367789999999999999987 8889999999999853 236777764
Q ss_pred ccCCCCCCCCcccceEEEEecCCCCCcEEEEEEeCcCCceeEEEEEecccccccccCCCCCcceEEec
Q 002002 473 GLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNL 540 (983)
Q Consensus 473 ~~~~~~t~nP~wne~f~f~~~~~~~~~L~i~V~D~d~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L 540 (983)
+++||.|||.|.|.+.++..+.|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 98 -----~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d-d~~IG~v~i~l~~l~~------~~~d~W~~L 153 (153)
T cd08676 98 -----QTLNPVWNETFRFEVEDVSNDQLHLDIWDHD-DDFLGCVNIPLKDLPS------CGLDSWFKL 153 (153)
T ss_pred -----CCCCCccccEEEEEeccCCCCEEEEEEEecC-CCeEEEEEEEHHHhCC------CCCCCeEeC
Confidence 6899999999999998776789999999987 8999999999999983 245899986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-14 Score=136.99 Aligned_cols=108 Identities=20% Similarity=0.329 Sum_probs=90.7
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
....|.|+|++|++|+..|..|.+||||++.+.. .+.+|+++++++||.|||+|.|.+... .+....|.|.|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~-~~~~~~l~~~v~d 91 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSE-ELEDISVEFLVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHH-HhCCCEEEEEEEE
Confidence 3578999999999999999999999999999842 367899999999999999999998653 2335679999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
.+..+ ++++||++.+++.. .+.....|+.|....
T Consensus 92 ~d~~~-~~~~iG~~~~~~~~---~~~~~~~w~~l~~~~ 125 (136)
T cd08404 92 SDRVT-KNEVIGRLVLGPKA---SGSGGHHWKEVCNPP 125 (136)
T ss_pred CCCCC-CCccEEEEEECCcC---CCchHHHHHHHHhCC
Confidence 88886 89999999999988 245577898886553
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=131.58 Aligned_cols=103 Identities=33% Similarity=0.461 Sum_probs=88.8
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC--CCEEEEEEEe
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP--CTVLTIGVFD 660 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~--~~~l~i~v~D 660 (983)
|.|.|+|++|++|+.. +. .|.+||||.+.+.+ ...+|+++.++.||.|||+|.|.+... ...|.|+|||
T Consensus 13 ~~l~v~i~~a~nL~~~---~~-~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d 88 (131)
T cd04026 13 NKLTVEVREAKNLIPM---DP-NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWD 88 (131)
T ss_pred CEEEEEEEEeeCCCCc---CC-CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEE
Confidence 5799999999999654 55 67899999999863 678999999999999999999998754 4589999999
Q ss_pred CCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 661 NGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 661 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
++..+ +|++||++.++|+++... ....||+|...
T Consensus 89 ~~~~~--------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 89 WDRTT--------RNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCCC--------CcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 99876 688999999999999754 55789999865
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-14 Score=135.26 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=85.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C---EEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P---KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~---~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~ 657 (983)
..+.|.|+|++|+||+.+ |. .|.+||||.+.+. + ...||+++++++||.|||+|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~---d~-~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~ 88 (136)
T cd08404 13 TTNRLTVVVLKARHLPKM---DV-SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFL 88 (136)
T ss_pred CCCeEEEEEEEeeCCCcc---cc-CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 345799999999999765 55 7899999999984 2 35689999999999999999999864 34579999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
|||++.++ ++++||++.+++... +....+|+.|..
T Consensus 89 v~d~d~~~--------~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 89 VLDSDRVT--------KNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred EEECCCCC--------CCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 99999987 678999999999983 444578887754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=132.71 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=83.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~ 657 (983)
..+.|.|+|++|+||+++ |. .|.+||||.+.+.+ .+.||+++++++||+|||+|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~---~~-~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 13 TAERLTVVVVKARNLVWD---NG-KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred CCCEEEEEEEEeeCCCCc---cC-CCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 445899999999999876 45 78999999999832 25689999999999999999999864 34589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|||+|..+ ++++||++.|.... .|...++|..+.
T Consensus 89 V~~~d~~~--------~~~~iG~v~lg~~~--~g~~~~hW~~ml 122 (136)
T cd08406 89 VAESTEDG--------KTPNVGHVIIGPAA--SGMGLSHWNQML 122 (136)
T ss_pred EEeCCCCC--------CCCeeEEEEECCCC--CChhHHHHHHHH
Confidence 99999887 67799999997764 444457776555
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=132.47 Aligned_cols=108 Identities=26% Similarity=0.388 Sum_probs=89.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC--C---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD--G---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|+.++..|.+||||+|.+. + .+++|+++++++||.|||+|.|.+... .+....|.|+|||
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFE-QIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHH-HhCCCEEEEEEEe
Confidence 457899999999999999999999999999984 2 467899999999999999999998653 2334589999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
.+..+ ++++||++.+++... +.....|+++...+
T Consensus 92 ~~~~~-~~~~iG~~~i~~~~~---~~~~~~W~~~~~~~ 125 (136)
T cd08402 92 YDRIG-KNDPIGKVVLGCNAT---GAELRHWSDMLASP 125 (136)
T ss_pred CCCCC-CCceeEEEEECCccC---ChHHHHHHHHHhCC
Confidence 88876 899999999999763 45566787775543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-14 Score=135.89 Aligned_cols=104 Identities=25% Similarity=0.279 Sum_probs=86.4
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTI 656 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i 656 (983)
+..|.|.|+|++|++|+.+ |. .|.+||||.+.+++ ...+|+++++++||.|||+|.|.+... ...|.|
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~---d~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKM---DV-GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred CCCCeEEEEEEEeeCCCcc---cC-CCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 4678999999999999765 55 78999999999842 356899999999999999999998643 237999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
+|||++..+ +|++||++.|++... +....+|+++..
T Consensus 88 ~v~d~~~~~--------~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 88 TVLDYDRIG--------KNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEEeCCCCC--------CCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 999999987 788999999999864 445578887763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=159.72 Aligned_cols=104 Identities=23% Similarity=0.325 Sum_probs=90.2
Q ss_pred CCCCeEEEEEECCe-EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECccceecC
Q 002002 26 GTASAYVIVDFDGQ-RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVG 104 (983)
Q Consensus 26 g~~dPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~ 104 (983)
+++||||+|.++++ ..||+++++++||+|||+|.|.+..+ ...|.|.|||++.++ +++||++.||+.++. .+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~----~s~L~f~VkD~D~~g--aD~IG~a~IPL~~L~-~G 147 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP----FAYLEFQVKDDDVFG--AQIIGTAKIPVRDIA-SG 147 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC----CceEEEEEEcCCccC--CceeEEEEEEHHHcC-CC
Confidence 47899999999875 56999999999999999999999876 579999999988884 689999999999988 67
Q ss_pred CeeeEEEEceecCCcce-eeeEEEEEEEEecCC
Q 002002 105 SESSVYYPLEKRSVFSQ-IKGEIGLKVYYIDED 136 (983)
Q Consensus 105 ~~~~~w~~L~~~~~~s~-~~G~l~l~i~~~~~~ 136 (983)
+..+.|++|.+..++.. ..|+|++++.|.+..
T Consensus 148 e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 148 ERISGWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred CceEEEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 88899999988866543 457999999998744
|
|
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-14 Score=135.70 Aligned_cols=104 Identities=22% Similarity=0.316 Sum_probs=86.9
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTI 656 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i 656 (983)
+..|.|.|+|++|+||+++ |. .|.+||||++.+.+ ...+|+++++++||.|||+|.|.+... ...|.|
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~---d~-~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~ 85 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAM---DA-NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEI 85 (133)
T ss_pred CCCCEEEEEEEEEcCCCCc---CC-CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEE
Confidence 3568999999999999776 55 78899999999853 467999999999999999999998643 358999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
+|||++..+ +|++||.+.+++.. .+....+||.+..
T Consensus 86 ~V~d~d~~~--------~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 86 TVWDKDIGK--------SNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEEeCCCCC--------CccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999999876 67899999999986 3444578887764
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-13 Score=122.49 Aligned_cols=80 Identities=23% Similarity=0.401 Sum_probs=67.7
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCC--
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNG-- 662 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d-- 662 (983)
|.|+|++|+|| .|.+||||.+.+.+ ...||+++.+|+||+|||+|.|++.. ...|.+.|||++
T Consensus 1 L~V~V~~A~~L---------~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGF---------KQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCC---------CCCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccc
Confidence 57999999999 45699999998853 46899999999999999999999964 679999999984
Q ss_pred -----CCCCcCCCCCCCCceeEEEEEEccc
Q 002002 663 -----RYKRDEAGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 663 -----~~~~~~~~~~~~d~~lG~~~i~l~~ 687 (983)
..+ .|+++|+..|.|..
T Consensus 71 ~~~~d~~~--------~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGEG--------TDAIMGKGQIQLDP 92 (118)
T ss_pred cccccccC--------cccEEEEEEEEECH
Confidence 333 78899888887743
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-13 Score=127.66 Aligned_cols=117 Identities=19% Similarity=0.268 Sum_probs=97.0
Q ss_pred cEEEEEEEEeeCCCCCC--CCCCCCeEEEEEEC------CeEEeeeCcCCCC-CCeeeeEEEEEeeecCCCCCceEEEEE
Q 002002 7 RKLIVEVCNAKNLMPKD--GQGTASAYVIVDFD------GQRRRTKTKFRDL-NPQWDERLEFLVHDAESMPTEILEINL 77 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~------~~~~~T~~~~~t~-nP~WnE~f~f~v~~~~~l~~~~L~v~V 77 (983)
+.|+|+|++|++|+..+ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+..++ ...|.|+|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE---LAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC---eEEEEEEE
Confidence 57999999999999988 47899999999993 4678999988775 9999999999998653 45799999
Q ss_pred EeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 78 YNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 78 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
||.+.. ++++||++.++++++. . ...|++|.+..+.....|.|.+++.+
T Consensus 79 ~d~~~~--~~~~iG~~~~~l~~l~-~---g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDSG--DDDFLGQACLPLDSLR-Q---GYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCCC--CCcEeEEEEEEhHHhc-C---ceEEEEecCCCCCCCcceeEEEEEEE
Confidence 987765 7899999999999985 2 35789998776654566999998864
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-13 Score=131.39 Aligned_cols=96 Identities=27% Similarity=0.422 Sum_probs=83.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-------CeEEeeeCcCCCCCCeeeeEEEEEeeecC-CCCCceEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-------GQRRRTKTKFRDLNPQWDERLEFLVHDAE-SMPTEILEIN 76 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-------~~~~~T~~~~~t~nP~WnE~f~f~v~~~~-~l~~~~L~v~ 76 (983)
....|.|+|++|++|+..+..|.+||||+|.+. ..+++|+++++++||+|||+|.|.+.... .+....|.|.
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 347899999999999999988999999999985 35789999999999999999999986531 1235689999
Q ss_pred EEeCCCCCCCCCccEEEEEECccce
Q 002002 77 LYNDKKTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 77 V~~~~~~~~~d~~lG~~~i~l~~l~ 101 (983)
|||.+..+ ++++||++.+++.++.
T Consensus 94 V~d~d~~~-~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 94 VKDYDLLG-SNDFEGEAFLPLNDIP 117 (133)
T ss_pred EEecCCCC-CCcEeEEEEEeHHHCC
Confidence 99988875 7999999999999987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-13 Score=131.03 Aligned_cols=106 Identities=32% Similarity=0.535 Sum_probs=92.2
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
..|.|+|++|++|+..+..|.+||||+|.+.+ .+++|++++++.||.|||+|.|.+...+ ....|.|.|||.+
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d~~ 90 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWDWD 90 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEECC
Confidence 68999999999999999889999999999953 6899999999999999999999987542 2568999999887
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
..+ ++++||++.+++.++... ....||+|.+..
T Consensus 91 ~~~-~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~~ 123 (131)
T cd04026 91 RTT-RNDFMGSLSFGVSELIKM--PVDGWYKLLNQE 123 (131)
T ss_pred CCC-CcceeEEEEEeHHHhCcC--ccCceEECcCcc
Confidence 765 889999999999998732 677899998763
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=128.73 Aligned_cols=90 Identities=23% Similarity=0.345 Sum_probs=79.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeE--EeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQR--RRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
.|+|.|++|++|...|..|.+||||++.++++. .+|+++++++||.|||+|.|.+..+. ...|.|+|||.+..+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~---~~~L~~~V~d~d~~~- 76 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG---NSILKISVMDYDLLG- 76 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCC---CCEEEEEEEECCCCC-
Confidence 379999999999999999999999999998854 57888899999999999999986543 578999999988876
Q ss_pred CCCccEEEEEECccce
Q 002002 86 RSTFLGKVKIAGSTFA 101 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~ 101 (983)
+|++||++.+++.+..
T Consensus 77 ~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 77 SDDLIGETVIDLEDRF 92 (124)
T ss_pred CCceeEEEEEeecccc
Confidence 8999999999998754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-14 Score=149.98 Aligned_cols=102 Identities=32% Similarity=0.481 Sum_probs=88.0
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec--CCCEEEEEEEeC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD--PCTVLTIGVFDN 661 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~--~~~~l~i~v~D~ 661 (983)
.|.|.|.+|+||.+| |. +|-||||+.+++-. .+.+|+|++.++||+|||+|+|.+.. ....|.|+||||
T Consensus 181 ~l~v~i~ea~NLiPM---Dp-NGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPM---DP-NGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred eEEEEehhhcccccc---CC-CCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 689999999999999 56 89999999999853 46799999999999999999999864 455899999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
|+.+ +++|+|...+.+++|... +...||.|...
T Consensus 257 DrTs--------RNDFMGslSFgisEl~K~-p~~GWyKlLsq 289 (683)
T KOG0696|consen 257 DRTS--------RNDFMGSLSFGISELQKA-PVDGWYKLLSQ 289 (683)
T ss_pred cccc--------cccccceecccHHHHhhc-chhhHHHHhhh
Confidence 9988 667999999999998753 34678887754
|
|
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.8e-13 Score=129.50 Aligned_cols=103 Identities=24% Similarity=0.259 Sum_probs=84.7
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEE--CC---EEEEeeeecCCCCCeeceEEEEEEec--C-CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY--GP---KWVRTRTILDRFNPRWNEQYTWDVYD--P-CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~--~~---~~~rT~~~~~t~nP~Wne~~~~~v~~--~-~~~l~i~ 657 (983)
..|.|.|+|++|+||+.+ |. .|++||||++.+ ++ ...||+++++++||.|||.|.|.+.. . ...|.|+
T Consensus 13 ~~~~L~v~vi~a~~L~~~---~~-~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~ 88 (136)
T cd08405 13 TANRITVNIIKARNLKAM---DI-NGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIIT 88 (136)
T ss_pred CCCeEEEEEEEeeCCCcc---cc-CCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 457899999999999665 55 789999999987 32 35689999999999999999999752 2 3489999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
|||++..+ +|++||++.+++.+. +...++|+.+..
T Consensus 89 v~d~~~~~--------~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 89 VMDKDRLS--------RNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EEECCCCC--------CCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 99999887 678999999999886 444567776654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-13 Score=130.65 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=89.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC---C---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD---G---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
...+|.|+|++|+||++++..|.+||||++.+. + .+++|+++++++||+|||+|.|.+.. +++....|.|.||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~-~~l~~~~L~~~V~ 91 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVAL-FQLSEVTLMFSVY 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCH-HHhCccEEEEEEE
Confidence 468899999999999999999999999999983 2 35789999999999999999999875 3455789999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
+.+..+ ++++||++.+++...- .+...+|+.+...
T Consensus 92 ~~~~~~-~~~~iG~v~l~~~~~~--~~~~~hW~~~l~~ 126 (138)
T cd08408 92 NKRKMK-RKEMIGWFSLGLNSSG--EEEEEHWNEMKES 126 (138)
T ss_pred ECCCCC-CCcEEEEEEECCcCCC--chHHHHHHHHHhC
Confidence 988876 8999999999887532 1234577776543
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-13 Score=127.72 Aligned_cols=90 Identities=28% Similarity=0.384 Sum_probs=78.2
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEE--EEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW--VRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYK 665 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~--~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~ 665 (983)
+|+|.|++|+||+.+ |. .|++||||++++++.. .||+++++++||+|||+|.|.+..+ ...|.|+|||++..+
T Consensus 1 ~lrV~Vi~a~~L~~~---d~-~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~ 76 (124)
T cd04037 1 LVRVYVVRARNLQPK---DP-NGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLG 76 (124)
T ss_pred CEEEEEEECcCCCCC---CC-CCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCC
Confidence 378999999999765 56 7899999999998854 5788899999999999999998655 458999999999987
Q ss_pred CcCCCCCCCCceeEEEEEEcccccC
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDT 690 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~ 690 (983)
+|++||++.++|.+..-
T Consensus 77 --------~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 77 --------SDDLIGETVIDLEDRFF 93 (124)
T ss_pred --------CCceeEEEEEeeccccc
Confidence 68899999999987653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.2e-14 Score=134.54 Aligned_cols=107 Identities=23% Similarity=0.368 Sum_probs=88.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC--C---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD--G---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|+||...+..|.+||||+|.+. + .+++|+++++++||.|||+|.|.+... .+....|.|+|||
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~-~~~~~~l~~~v~d 91 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE-RLRETTLIITVMD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH-HhCCCEEEEEEEE
Confidence 457899999999999999999999999999982 2 467899999999999999999998642 2335689999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.+..+ ++++||++.+++... +.....|+.+...
T Consensus 92 ~~~~~-~~~~lG~~~i~~~~~---~~~~~~w~~~~~~ 124 (136)
T cd08405 92 KDRLS-RNDLIGKIYLGWKSG---GLELKHWKDMLSK 124 (136)
T ss_pred CCCCC-CCcEeEEEEECCccC---CchHHHHHHHHhC
Confidence 88876 889999999999874 4556677776544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.9e-13 Score=127.07 Aligned_cols=95 Identities=22% Similarity=0.279 Sum_probs=80.7
Q ss_pred ceeccccccccCCCCCCCCCcEEEEEECCE-------EEEeeeecCCCCCeeceEEEEEEe-cCCCEEEEEEEeCCC---
Q 002002 595 RGATNLLPVKTKDGTRGTTDAYVVAKYGPK-------WVRTRTILDRFNPRWNEQYTWDVY-DPCTVLTIGVFDNGR--- 663 (983)
Q Consensus 595 ~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-------~~rT~~~~~t~nP~Wne~~~~~v~-~~~~~l~i~v~D~d~--- 663 (983)
++|++|+.+ |. .|++||||++++.+. ..||+++++++||.|||.|.|.+. +....|.|+|||++.
T Consensus 7 i~a~~L~~~---d~-~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~ 82 (120)
T cd04048 7 ISCRNLLDK---DV-LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSK 82 (120)
T ss_pred EEccCCCCC---CC-CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcC
Confidence 789999765 56 789999999998653 489999999999999999999864 455689999999997
Q ss_pred -CCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 664 -YKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 664 -~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
.+ .|++||.+.+++++|..+.....+++|.
T Consensus 83 ~~~--------~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 83 DLS--------DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCC--------CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 55 6789999999999998776567788884
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-13 Score=133.04 Aligned_cols=108 Identities=22% Similarity=0.331 Sum_probs=88.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
....|.|+|++|+||++.+ .+.+||||++.+.. .+++|+++++++||.|||+|.|.+.. +.+....|.|.||+
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~-~~l~~~~L~~~V~~ 90 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTS-RQLDTASLSLSVMQ 90 (137)
T ss_pred CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCH-HHhCccEEEEEEEe
Confidence 4578999999999999998 78899999999843 46789999999999999999999865 34556789999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.+..+ ++++||++.+...... .++....|..+...
T Consensus 91 ~~~~~-~~~~lG~v~ig~~~~~-~~~~~~hW~~~~~~ 125 (137)
T cd08409 91 SGGVR-KSKLLGRVVLGPFMYA-RGKELEHWNDMLSK 125 (137)
T ss_pred CCCCC-CcceEEEEEECCcccC-CChHHHHHHHHHhC
Confidence 88765 8999999999865543 44556677776544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-13 Score=132.28 Aligned_cols=104 Identities=26% Similarity=0.264 Sum_probs=84.4
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C---EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P---KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTI 656 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~---~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i 656 (983)
+..|.|+|+|++|++|+++ |. .|.+||||.+++. + ...+|+++.+++||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~L~V~v~~A~~L~~~---d~-~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~ 86 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAM---DI-TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLII 86 (134)
T ss_pred CCCCEEEEEEEEeeCCCcc---cc-CCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 3568999999999999766 55 7899999999984 2 366999999999999999999998532 236999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
+|||++..+ +|++||++.|++... +....+|+.+..
T Consensus 87 ~v~d~~~~~--------~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 87 AVVDYDRVG--------HNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EEEECCCCC--------CCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 999999987 688999999998743 333477776653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-13 Score=132.77 Aligned_cols=109 Identities=18% Similarity=0.345 Sum_probs=87.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-C----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-G----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|+..|..|.+||||++.+. + .+++|+++++++||.|||+|.|.+... .+....|.|.|||
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~-~l~~~~l~~~V~d 90 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQE-ELENVSLVFTVYG 90 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHH-HhCCCEEEEEEEe
Confidence 347899999999999999999999999999972 2 467899999999999999999998542 2334579999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
.+..+ ++++||++.+..... .+.....|+.|....
T Consensus 91 ~d~~~-~~~~iG~~~l~~~~~--~~~~~~~W~~l~~~~ 125 (135)
T cd08410 91 HNVKS-SNDFIGRIVIGQYSS--GPSETNHWRRMLNSQ 125 (135)
T ss_pred CCCCC-CCcEEEEEEEcCccC--CchHHHHHHHHHhCC
Confidence 87765 899999998765332 233457788876653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.4e-13 Score=126.16 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=83.3
Q ss_pred EEEEeeCCCCCCCCCCCCeEEEEEECCe-------EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCC--
Q 002002 12 EVCNAKNLMPKDGQGTASAYVIVDFDGQ-------RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKK-- 82 (983)
Q Consensus 12 ~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~-- 82 (983)
-.++|++|+.++..|.+||||++.+.+. .++|+++++++||.|||+|.|.+.... ...|.|+|||.+.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~---~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE---VQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe---eeEEEEEEEEecCCc
Confidence 3478999999999999999999999664 489999999999999999999865432 5689999999876
Q ss_pred --CCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 83 --TGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 83 --~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
.+ ++++||++.+++.++. .+.....|++|.
T Consensus 82 ~~~~-~~d~iG~~~i~l~~l~-~~~~~~~~~~l~ 113 (120)
T cd04048 82 KDLS-DHDFLGEAECTLGEIV-SSPGQKLTLPLK 113 (120)
T ss_pred CCCC-CCcEEEEEEEEHHHHh-cCCCcEEEEEcc
Confidence 54 8999999999999998 445666788883
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.4e-13 Score=125.22 Aligned_cols=104 Identities=23% Similarity=0.328 Sum_probs=83.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC--C---eEEeeeCcCCCC-CCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD--G---QRRRTKTKFRDL-NPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~-nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
..++|.|+|++|+||++.+..+.+||||+|++. + .+++|+++++|+ ||.|||+|.|.+.... .+-.|.|+||
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~--~~v~l~v~v~ 89 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE--HGIQFLIKLY 89 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh--heeEEEEEEE
Confidence 457899999999999998667788999999983 2 578899999995 6999999999998642 3568899999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
|.+..+ ++++||++.+..+... +....+|...
T Consensus 90 d~~~~~-~n~~IG~v~lG~~~~~--~~~~~hW~~m 121 (135)
T cd08692 90 SRSSVR-RKHFLGQVWISSDSSS--SEAVEQWKDT 121 (135)
T ss_pred eCCCCc-CCceEEEEEECCccCC--chhhhhHHHH
Confidence 888776 8999999999987632 2334566554
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=7e-13 Score=126.04 Aligned_cols=95 Identities=24% Similarity=0.421 Sum_probs=81.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|++.+..+.+||||++.+. ..+++|+++++++||.|||+|.|......++....|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 457899999999999999888999999999983 257899999999999999999997443333345789999998
Q ss_pred CCCCCCCCCccEEEEEECccce
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~ 101 (983)
.+.. ++++||++.++++++.
T Consensus 93 ~~~~--~~~~iG~~~i~l~~l~ 112 (123)
T cd04035 93 EDRF--GNDFLGETRIPLKKLK 112 (123)
T ss_pred cCCc--CCeeEEEEEEEcccCC
Confidence 7766 6889999999999988
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.6e-13 Score=126.95 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=82.8
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C---EEEEeeeecCCCCCeeceEEEEEEec--CC-CEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P---KWVRTRTILDRFNPRWNEQYTWDVYD--PC-TVLTI 656 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~---~~~rT~~~~~t~nP~Wne~~~~~v~~--~~-~~l~i 656 (983)
+..|.|.|+|++|++|+.+ |. .|.+||||.+.+. . ...+|+++++++||.|||+|.|.+.. .+ ..|.|
T Consensus 11 ~~~~~L~V~vi~a~~L~~~---d~-~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~ 86 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQT---DM-SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVF 86 (135)
T ss_pred CCCCeEEEEEEEecCCCcc---cC-CCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEE
Confidence 4568999999999999766 55 7899999999973 2 35799999999999999999999853 22 37999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
+|||++..+ +|++||++.|....... ...++|+.+..
T Consensus 87 ~V~d~d~~~--------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 87 TVYGHNVKS--------SNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEEeCCCCC--------CCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 999999877 78899999876544322 22367776654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=123.75 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=93.7
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEE------CCEEEEeeeecCCC-CCeeceEEEEEEecCC-CEEEEEEEe
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY------GPKWVRTRTILDRF-NPRWNEQYTWDVYDPC-TVLTIGVFD 660 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~------~~~~~rT~~~~~t~-nP~Wne~~~~~v~~~~-~~l~i~v~D 660 (983)
.|+|+|++|+||+.++. +. .+..||||++++ .....||+++.++. ||.|||+|.|.+..+. ..|.|+|||
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d 80 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DK-GSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYD 80 (128)
T ss_pred EEEEEEEeeecCCCCCC-CC-CCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEe
Confidence 58999999999977631 13 678999999998 34678999998876 9999999999998665 479999999
Q ss_pred CCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 661 NGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 661 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
++.. +|++||.+.+++++|..|. .+++|....... ...|.|.+.+++
T Consensus 81 ~~~~---------~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 81 EDSG---------DDDFLGQACLPLDSLRQGY---RHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCCC---------CCcEeEEEEEEhHHhcCce---EEEEecCCCCCC-CcceeEEEEEEE
Confidence 9875 3669999999999997764 578888653331 335889888765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-13 Score=131.11 Aligned_cols=107 Identities=22% Similarity=0.382 Sum_probs=87.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC--C---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD--G---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|++++..|.+||||+|.+. + .+++|+++++++||.|||+|.|.+... .+....|.|+|||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPE-NVDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHH-HhCCCEEEEEEEE
Confidence 457899999999999999999999999999983 2 367899999999999999999998542 2334579999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.+..+ ++++||++.+++.. .+.....|+.+...
T Consensus 91 ~~~~~-~~~~IG~~~l~~~~---~~~~~~~w~~~~~~ 123 (134)
T cd08403 91 YDRVG-HNELIGVCRVGPNA---DGQGREHWNEMLAN 123 (134)
T ss_pred CCCCC-CCceeEEEEECCCC---CCchHHHHHHHHHC
Confidence 88876 89999999999773 33445677776444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-13 Score=130.24 Aligned_cols=108 Identities=27% Similarity=0.440 Sum_probs=92.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|+..+..+.+||||++.+.+ .+++|+++.++.||.|||+|.|.+... .+....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~-~l~~~~l~~~v~d 90 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE-QLEEVSLVITVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHH-HhCCcEEEEEEEe
Confidence 3578999999999999999889999999999854 367999999999999999999998663 2335789999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
.+..+ ++++||++.++++. .+.....|++|.+..
T Consensus 91 ~~~~~-~~~~lG~~~i~l~~---~~~~~~~W~~l~~~~ 124 (134)
T cd00276 91 KDSVG-RNEVIGQVVLGPDS---GGEELEHWNEMLASP 124 (134)
T ss_pred cCCCC-CCceeEEEEECCCC---CCcHHHHHHHHHhCC
Confidence 88775 89999999999999 446678899988764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.4e-13 Score=129.59 Aligned_cols=104 Identities=24% Similarity=0.307 Sum_probs=87.7
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..|.|.|.|++|+||+.. +. .+.+||||.+.+.+ ...+|+++.++.||.|||+|.|.+... ...|.|+
T Consensus 12 ~~~~L~V~v~~a~~L~~~---~~-~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~ 87 (134)
T cd00276 12 TAERLTVVVLKARNLPPS---DG-KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVIT 87 (134)
T ss_pred CCCEEEEEEEEeeCCCCc---cC-CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEE
Confidence 346899999999999765 45 77899999999854 256999999999999999999998764 4689999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
|||.+..+ ++++||.+.+++++ .+...++|++|...
T Consensus 88 v~d~~~~~--------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 88 VVDKDSVG--------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred EEecCCCC--------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 99999876 67899999999999 55556889888754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=121.61 Aligned_cols=96 Identities=27% Similarity=0.358 Sum_probs=79.6
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeeceEEEEEEecC----CCEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-----PKWVRTRTILDRFNPRWNEQYTWDVYDP----CTVLTIG 657 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-----~~~~rT~~~~~t~nP~Wne~~~~~v~~~----~~~l~i~ 657 (983)
.+.|+|+|++|++|+.. +. .+.+||||++.+. ....||+++.+++||.|||.|.|..... ...|.|+
T Consensus 14 ~~~L~V~v~~a~~L~~~---~~-~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 14 NSALHCTIIRAKGLKAM---DA-NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred CCEEEEEEEEeeCCCCC---CC-CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 46899999999999765 55 6889999999973 2478999999999999999999974432 3589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEE
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYL 695 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~ 695 (983)
|||++..+ +++||.+.++|++|..++...
T Consensus 90 v~d~~~~~---------~~~iG~~~i~l~~l~~~~~~~ 118 (123)
T cd04035 90 VLDEDRFG---------NDFLGETRIPLKKLKPNQTKQ 118 (123)
T ss_pred EEEcCCcC---------CeeEEEEEEEcccCCCCcceE
Confidence 99998753 569999999999998877333
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-13 Score=127.70 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=84.8
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec--CC-CEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD--PC-TVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~--~~-~~l~i~ 657 (983)
..+.|.|+|++|+||++++ .+.+||||.+.+.+ ...||++++++.||.|||.|.|.+.. .. ..|.|+
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-----~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~ 87 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-----HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLS 87 (137)
T ss_pred CCCeEEEEEEEecCCCccc-----CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEE
Confidence 3468999999999997763 56799999999743 35699999999999999999999853 23 489999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
|||.+..+ ++++||++.|.......|...++|+.+..
T Consensus 88 V~~~~~~~--------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 88 VMQSGGVR--------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EEeCCCCC--------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 99999876 77899999999776666666677876653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=118.59 Aligned_cols=80 Identities=23% Similarity=0.399 Sum_probs=68.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC---
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND--- 80 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~--- 80 (983)
|.|+|.+|+||. |.+||||++.++. .+++|+++++|+||+|||+|.|.+.. ...|.+.|||.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-----s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-----SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-----CCEEEEEEEEcccc
Confidence 689999999995 5699999999953 46899999999999999999999863 57999999986
Q ss_pred ----CCCCCCCCccEEEEEECcc
Q 002002 81 ----KKTGKRSTFLGKVKIAGST 99 (983)
Q Consensus 81 ----~~~~~~d~~lG~~~i~l~~ 99 (983)
+.. ++|+++|++.+.|+.
T Consensus 71 ~~~~d~~-~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGE-GTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccc-CcccEEEEEEEEECH
Confidence 233 389999888888764
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=120.70 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=75.3
Q ss_pred EceeccccccccCCCCCCCCCcEEEEEECC------EEEEeeeecCCCCCeeceEEEEEEec-----CCCEEEEEEEeCC
Q 002002 594 IRGATNLLPVKTKDGTRGTTDAYVVAKYGP------KWVRTRTILDRFNPRWNEQYTWDVYD-----PCTVLTIGVFDNG 662 (983)
Q Consensus 594 v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~------~~~rT~~~~~t~nP~Wne~~~~~v~~-----~~~~l~i~v~D~d 662 (983)
.++|++|+.+ |. .|++||||++++.+ ...+|+++++++||.|| +|.|++.+ +...|.|+|||++
T Consensus 6 ~i~a~~L~~~---d~-~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 6 QFSGKKLDKK---DF-FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEeCCCCCC---CC-CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 3689999655 66 78999999998754 25899999999999999 68887643 2569999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEe
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSL 700 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 700 (983)
..+ +|++||++.+++++|..++ ..++.+
T Consensus 81 ~~~--------~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 81 SSG--------KHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred CCC--------CCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 987 7889999999999998655 444444
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-12 Score=122.10 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=80.9
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C---EEEEeeeecCCC-CCeeceEEEEEEecC--CCEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P---KWVRTRTILDRF-NPRWNEQYTWDVYDP--CTVLTI 656 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~---~~~rT~~~~~t~-nP~Wne~~~~~v~~~--~~~l~i 656 (983)
+..|.|.|.|++|+||+++. + .+..||||.+++- + .+.||+++++|+ ||.|||.|.|+|... ...|.|
T Consensus 11 p~~~rLtV~VikarnL~~~~--~--~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSS--T--PLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred CcCCeEEEEEEEccCCCccc--C--CCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 56789999999999998763 3 5667999999873 2 567999999996 699999999999643 237889
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEe
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSL 700 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 700 (983)
+|||++..+ ++++||++.+..+.. .+...+||...
T Consensus 87 ~v~d~~~~~--------~n~~IG~v~lG~~~~-~~~~~~hW~~m 121 (135)
T cd08692 87 KLYSRSSVR--------RKHFLGQVWISSDSS-SSEAVEQWKDT 121 (135)
T ss_pred EEEeCCCCc--------CCceEEEEEECCccC-CchhhhhHHHH
Confidence 999999877 677999999998763 22223566543
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-12 Score=122.13 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=84.1
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC------EEEEeeeecCCCCCeeceEEEEEEec---CCCEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP------KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLT 655 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~------~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~ 655 (983)
+..+.|.|+|++|+||+++ +. .|.+||||.+.+.+ .+.||+++++++||+|||+|.|++.. ....|.
T Consensus 12 ~~~~~L~V~VikarnL~~~---~~-~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~ 87 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNL---AM-NKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLM 87 (138)
T ss_pred CCCCeEEEEEEEecCCCcc---cc-CCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEE
Confidence 4567999999999999776 55 78899999999842 25699999999999999999999863 345899
Q ss_pred EEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 656 IGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 656 i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|+|||.+..+ ++++||.+.+++.....+ ...+|+.+.
T Consensus 88 ~~V~~~~~~~--------~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 88 FSVYNKRKMK--------RKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EEEEECCCCC--------CCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 9999999877 788999999988764322 225676554
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-12 Score=161.16 Aligned_cols=118 Identities=21% Similarity=0.326 Sum_probs=100.1
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCe-EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ-RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
-+.|.|+|++|+||. +..|.+||||++.++++ +++|++++++.||+|||.|+|.+.++.. ...|.|+|||.+.++
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~--~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPK--GQKLHISCKSKNTFG 2054 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCC--CCceEEEEEecCccC
Confidence 378999999999998 33689999999999965 8899999999999999999999877631 467999999988773
Q ss_pred CCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeE---EEEEEEEe
Q 002002 85 KRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGE---IGLKVYYI 133 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~---l~l~i~~~ 133 (983)
++.||.+.|++.++. .+.....||+|.+.+.+ .|. |.+.+.|.
T Consensus 2055 --kd~~G~~~i~l~~vv-~~~~~~~~~~L~~~~~k---~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2055 --KSSLGKVTIQIDRVV-MEGTYSGEYSLNPESNK---DGSSRTLEIEFQWS 2100 (2102)
T ss_pred --CCCCceEEEEHHHHh-cCceeeeeeecCccccc---CCCcceEEEEEEec
Confidence 559999999999998 56788899999965433 376 99988885
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=114.05 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=73.9
Q ss_pred EEEEEeeCCCCCCCCCCCCeEEEEEECC------eEEeeeCcCCCCCCeeeeEEEEEeeecCC-CCCceEEEEEEeCCCC
Q 002002 11 VEVCNAKNLMPKDGQGTASAYVIVDFDG------QRRRTKTKFRDLNPQWDERLEFLVHDAES-MPTEILEINLYNDKKT 83 (983)
Q Consensus 11 V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~WnE~f~f~v~~~~~-l~~~~L~v~V~~~~~~ 83 (983)
+-.++|++|+.+|..|.+||||+|++.+ ..++|+++++++||.|| +|.|.+..... -....|.|+|||.+..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 4456999999999999999999999854 35899999999999999 68877543211 0146899999998887
Q ss_pred CCCCCccEEEEEECccce
Q 002002 84 GKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~ 101 (983)
+ +|++||++.++++.+.
T Consensus 83 ~-~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 83 G-KHDLIGEFETTLDELL 99 (110)
T ss_pred C-CCcEEEEEEEEHHHHh
Confidence 6 8999999999999987
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-11 Score=106.67 Aligned_cols=82 Identities=33% Similarity=0.643 Sum_probs=73.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
|+|+|.+|++|...+..+.+||||++.+.+ ..++|+++.++.+|.|||+|.|.+..+. ...|.|+||+.+..+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~~~V~~~~~~~- 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD---LDSLSFEVWDKDSFG- 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC---GTEEEEEEEEETSSS-
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc---ccceEEEEEECCCCC-
Confidence 789999999999988888999999999977 6799999999999999999999976654 456999999888775
Q ss_pred CCCccEEEE
Q 002002 86 RSTFLGKVK 94 (983)
Q Consensus 86 ~d~~lG~~~ 94 (983)
++++||++.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 699999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-12 Score=132.24 Aligned_cols=97 Identities=25% Similarity=0.320 Sum_probs=81.6
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
..+.++.++|..|++|.+++.+|..|||+++++.. .+.+|++..+++||.|+|+........+......+.+.|+
T Consensus 90 ~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vc 169 (362)
T KOG1013|consen 90 SESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVC 169 (362)
T ss_pred hhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeec
Confidence 34578999999999999999999999999999853 5688999999999999998877655545555677888898
Q ss_pred eCCCCCCCCCccEEEEEECccce
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~ 101 (983)
+.+.+. .++++|+..+++..+.
T Consensus 170 dn~~~~-~~~sqGq~r~~lkKl~ 191 (362)
T KOG1013|consen 170 DNDKKT-HNESQGQSRVSLKKLK 191 (362)
T ss_pred cCcccc-cccCcccchhhhhccC
Confidence 888876 8899999998887765
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-12 Score=130.90 Aligned_cols=219 Identities=21% Similarity=0.235 Sum_probs=154.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEECC-----eEEEeeeeeeccCCCCCCCCcccceEEE--EecCCC-CCc
Q 002002 428 YLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGA-----QLFKTGRTSVGLSPSSSANPTWNEDLVF--VAAEPF-EPF 499 (983)
Q Consensus 428 ~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg~-----~~~rT~~~~~~~~~~~t~nP~wne~f~f--~~~~~~-~~~ 499 (983)
.+..+|..|++|.++ +.++..|||++..++. ..+||++.. +++||.|+|.... ...++. ...
T Consensus 94 ~~~~tl~~a~~lk~~----~~~~~~d~~~~~~llpga~kl~slr~~t~~------n~lN~~w~etev~~~i~~~~~~~K~ 163 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPM----DINGLADPYVKLHLLPGAGKLNSLRTKTTR------NTLNPEWNETEVYEGITDDDTHLKV 163 (362)
T ss_pred hcceeechhcccchh----hhhhhcchHHhhhcccchhhhhhhhHHhhc------cCcCcceeccceecccccchhhhhh
Confidence 377889999999998 9999999999999953 346777663 6999999998654 333332 457
Q ss_pred EEEEEEeCc---CCceeEEEEEecccccccccCCCCCcceEEeccCCCC------CCcceEEEEEEEEeccccccccccc
Q 002002 500 LVVTVEDVT---NGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDET------RPYAGRIHLRACLEGGYHVLDEAAH 570 (983)
Q Consensus 500 L~i~V~D~d---~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~------~~~~G~l~l~i~l~g~~~v~~~~~~ 570 (983)
+++.|+|.+ ..+++|+..++|..+..++. +....|+.-.-+.+ .+..|++.+.+..+
T Consensus 164 ~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~----------- 229 (362)
T KOG1013|consen 164 LRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEERGAILISLAYS----------- 229 (362)
T ss_pred hheeeccCcccccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhccceeeeeccC-----------
Confidence 888898887 67999999999998875432 23344544222211 23355555543211
Q ss_pred cCCchhHHHHhhccCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEE
Q 002002 571 VTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTW 645 (983)
Q Consensus 571 ~~~d~~~~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~ 645 (983)
....-|.++++++..|..+ |. +|.+|||+..++.. .+.+|.+.++++||++|++|.+
T Consensus 230 --------------s~~~~l~vt~iRc~~l~ss---Ds-ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~ 291 (362)
T KOG1013|consen 230 --------------STTPGLIVTIIRCSHLASS---DS-NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFY 291 (362)
T ss_pred --------------cCCCceEEEEEEeeeeecc---cc-CCCCCccceeecCCCcchhhcccCcchhccCCccccccccc
Confidence 1334688999999999888 45 78899999998753 3569999999999999999999
Q ss_pred EEecC---CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEE
Q 002002 646 DVYDP---CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSY 698 (983)
Q Consensus 646 ~v~~~---~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 698 (983)
.+... ...+.|.|||++..++ .| ++|-+...+. ..+....+|+
T Consensus 292 ~i~pgdLa~~kv~lsvgd~~~G~s-------~d-~~GG~~~g~~--rr~~v~~h~g 337 (362)
T KOG1013|consen 292 DIGPGDLAYKKVALSVGDYDIGKS-------ND-SIGGSMLGGY--RRGEVHKHWG 337 (362)
T ss_pred cCCccchhcceEEEeecccCCCcC-------cc-CCCccccccc--ccchhhcCcc
Confidence 88542 2389999999998652 34 7776654332 3334444554
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=136.83 Aligned_cols=128 Identities=15% Similarity=0.142 Sum_probs=105.9
Q ss_pred cEEEEEEEceecccccccc--------------CCCCCCCCCcEEEEEECCE-EEEeeeecCC-CCCeeceEEEEEEecC
Q 002002 587 IGLLEVGIRGATNLLPVKT--------------KDGTRGTTDAYVVAKYGPK-WVRTRTILDR-FNPRWNEQYTWDVYDP 650 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~--------------~d~~~g~sDpy~~~~~~~~-~~rT~~~~~t-~nP~Wne~~~~~v~~~ 650 (983)
-|.|.++|++|++|+.++- .....++||||+.|.+++. ..||+++.+. .||+|||.|.+++..+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 4789999999999975310 0111468899999999884 5699999885 6999999999999999
Q ss_pred CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 651 CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 651 ~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
.+.|+|.|.|.|.++ . .+||++.||+.+|..|.....||++.....+-.+..-.|+++++|+..
T Consensus 87 ~~~v~f~vkd~~~~g--------~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIG--------A-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccC--------c-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 999999999999998 3 499999999999999999999999997754433333479999999874
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-10 Score=102.98 Aligned_cols=81 Identities=31% Similarity=0.545 Sum_probs=70.9
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC---EEEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYK 665 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~---~~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~ 665 (983)
|+|+|++|+||+.. +. .+..||||.+.+++ ...+|+++.++.+|.|||+|.|++..+ ...|.|+|||++..+
T Consensus 1 L~v~I~~a~~L~~~---~~-~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSK---DS-NGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFG 76 (85)
T ss_dssp EEEEEEEEESSSSS---ST-TSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSS
T ss_pred CEEEEEEEECCCCc---cc-CCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCC
Confidence 78999999999654 44 77899999999977 779999999999999999999997544 457999999999987
Q ss_pred CcCCCCCCCCceeEEEE
Q 002002 666 RDEAGKPGKDVRVGKIR 682 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~ 682 (983)
+|.+||++.
T Consensus 77 --------~~~~iG~~~ 85 (85)
T PF00168_consen 77 --------KDELIGEVK 85 (85)
T ss_dssp --------SEEEEEEEE
T ss_pred --------CCCEEEEEC
Confidence 688999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.6e-11 Score=132.82 Aligned_cols=127 Identities=23% Similarity=0.360 Sum_probs=100.4
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKR 666 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~ 666 (983)
...+.++|+.|+||.+. |. .|+|||||.+.+|..+.||++|...+||+|||.|.|+.......|.+.|||+|..-+
T Consensus 294 sakitltvlcaqgl~ak---dk-tg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAK---DK-TGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLK 369 (1283)
T ss_pred ceeeEEeeeecccceec---cc-CCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHH
Confidence 45788999999999654 66 899999999999999999999999999999999999999988999999999987531
Q ss_pred cCC---CCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 667 DEA---GKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 667 ~~~---~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
... =....|+|||+..|.+..|... ..-||.|.....+. ..+|.|++.|..
T Consensus 370 sklrqkl~resddflgqtvievrtlsge--mdvwynlekrtdks-avsgairlhisv 423 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDKS-AVSGAIRLHISV 423 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecccc--hhhhcchhhccchh-hccceEEEEEEE
Confidence 100 0124688999999999998543 37899988653333 235776655544
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.09 E-value=6e-10 Score=100.85 Aligned_cols=101 Identities=36% Similarity=0.621 Sum_probs=86.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 9 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
|.|.|++|++|......+.++|||.+.+.+ ..++|+++.++.||.|||.|.|.+... ....|.|.||+..... .+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~---~~~~l~i~v~~~~~~~-~~ 76 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP---ESDTLTVEVWDKDRFS-KD 76 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC---CCCEEEEEEEecCCCC-CC
Confidence 579999999998877777899999999998 899999999999999999999999763 1678999999877764 68
Q ss_pred CccEEEEEECccceecCCeeeEEEEc
Q 002002 88 TFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
.++|++.+++..+.........|++|
T Consensus 77 ~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 77 DFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ceeEEEEEeHHHhhhcCCcCcceecC
Confidence 99999999999987334556677764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.7e-11 Score=134.07 Aligned_cols=125 Identities=24% Similarity=0.487 Sum_probs=104.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC--------------------------C-----eEEeeeCcCCCCCCe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD--------------------------G-----QRRRTKTKFRDLNPQ 53 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--------------------------~-----~~~~T~~~~~t~nP~ 53 (983)
+.+-|.|.+.+|+||.++|.+|.+|||+...+- | -.+-|+++++|+||.
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 445677888899999999999999999988761 1 134588999999999
Q ss_pred eeeEEEEEeeecCCCCCceEEEEEEeCCCC--------------------------------CCC---CCccEEEEEECc
Q 002002 54 WDERLEFLVHDAESMPTEILEINLYNDKKT--------------------------------GKR---STFLGKVKIAGS 98 (983)
Q Consensus 54 WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~--------------------------------~~~---d~~lG~~~i~l~ 98 (983)
|+|.|.|.+.+- ....+.+-+||.|+- ++. |||||.+.||+.
T Consensus 192 W~EkF~F~IeDv---~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 192 WSEKFQFTIEDV---QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred hhhheeeehhcc---ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 999999999654 478999999986651 223 799999999999
Q ss_pred cceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 99 TFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 99 ~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
++.. .-.++||.|++++..|+++|.++|++++..
T Consensus 269 EiP~--~Gld~WFkLepRS~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 269 EIPP--DGLDQWFKLEPRSDKSKVQGQVKLKLWLST 302 (1103)
T ss_pred cCCc--chHHHHhccCcccccccccceEEEEEEEee
Confidence 9864 346899999999999999999999998864
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=103.14 Aligned_cols=92 Identities=24% Similarity=0.402 Sum_probs=78.2
Q ss_pred EEEEEEEeeCCCCCC--CCC--CCCeEEEEEECC---eEEeeeCcCCCCC--CeeeeEEEEEeeec--------------
Q 002002 9 LIVEVCNAKNLMPKD--GQG--TASAYVIVDFDG---QRRRTKTKFRDLN--PQWDERLEFLVHDA-------------- 65 (983)
Q Consensus 9 L~V~v~~a~~L~~~d--~~g--~~dPyv~v~~~~---~~~~T~~~~~t~n--P~WnE~f~f~v~~~-------------- 65 (983)
|+|.|.+|++++..+ ..| ++||||++.+.+ .+++|.++++++| |.||++|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966543 356 599999999965 6789999999999 99999999987652
Q ss_pred ------CCCCCceEEEEEEeCCCCCCCCCccEEEEEECccce
Q 002002 66 ------ESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 66 ------~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~ 101 (983)
+.+....|.++|||.|.++ +|++||++.+++..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s-~dd~iG~~~l~l~~l~ 122 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFS-PDDFLGSLELDLSILP 122 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccC-CCCcceEEEEEhhhcc
Confidence 2345678999999999886 8999999999999886
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=98.40 Aligned_cols=99 Identities=31% Similarity=0.497 Sum_probs=83.6
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEec-CCCEEEEEEEeCCCCCCc
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYD-PCTVLTIGVFDNGRYKRD 667 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~-~~~~l~i~v~D~d~~~~~ 667 (983)
|.|.|++|++|... .. .+..+|||.+.+.+ ...+|+++.++.||.||+.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~---~~-~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~-- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DL-NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS-- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CC-CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC--
Confidence 46899999999653 23 56799999999987 88999999999999999999999987 5679999999999876
Q ss_pred CCCCCCCCceeEEEEEEccccc-CCCeEEEEEEe
Q 002002 668 EAGKPGKDVRVGKIRVRLSTLD-TNRVYLNSYSL 700 (983)
Q Consensus 668 ~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 700 (983)
.+.+||.+.+++..+. .+.....|++|
T Consensus 75 ------~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 ------KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ------CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 5779999999999987 55555666654
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-09 Score=121.14 Aligned_cols=118 Identities=15% Similarity=0.262 Sum_probs=92.0
Q ss_pred cEEEEEEEEeeCCCCC-----CCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEE
Q 002002 7 RKLIVEVCNAKNLMPK-----DGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEIN 76 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~-----d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~ 76 (983)
..|.|+|+.|++++.. +.....||||+|.+.| .+++|++..|+.||.|||+|.|.+..++ -..|.|.
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PE---LAlLrf~ 485 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPD---LALISFE 485 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccC---ceEEEEE
Confidence 5699999999987521 2234579999999965 4677888888999999999999998874 4578999
Q ss_pred EEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 77 LYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 77 V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
|+|+|... .++|+|++.+|+..+. ...++++|.++.+..-..-.|.+++.|
T Consensus 486 V~D~D~~~-~ddfiGQ~~LPv~~Lr----~GyR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 486 VYDYEVST-ADAFCGQTCLPVSELI----EGIRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEecCCCC-CCcEEEEEecchHHhc----CCceeEeccCCCcCCCCCceEEEEEEe
Confidence 99887665 7999999999999987 356788998776554333466666544
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=97.26 Aligned_cols=91 Identities=32% Similarity=0.543 Sum_probs=78.6
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCE---EEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEeCCCCC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK---WVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFDNGRYK 665 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~---~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D~d~~~ 665 (983)
|.+.|+.|++|... +. .+..+|||.+++... ..+|+++.++.||.||++|.|++..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~---~~-~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~ 77 (101)
T smart00239 2 LTVKIISARNLPKK---DK-KGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG 77 (101)
T ss_pred eEEEEEEeeCCCCC---CC-CCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc
Confidence 67899999999543 22 357899999999764 79999999999999999999999887 779999999998765
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCC
Q 002002 666 RDEAGKPGKDVRVGKIRVRLSTLDTNR 692 (983)
Q Consensus 666 ~~~~~~~~~d~~lG~~~i~l~~l~~~~ 692 (983)
.+.+||.+.+++.++..+.
T Consensus 78 --------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 --------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred --------CCceeEEEEEEHHHcccCc
Confidence 5779999999999987665
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-09 Score=100.85 Aligned_cols=93 Identities=22% Similarity=0.280 Sum_probs=77.4
Q ss_pred EEEEEceeccccccccCCCCCC--CCCcEEEEEECC---EEEEeeeecCCCC--CeeceEEEEEEecC------------
Q 002002 590 LEVGIRGATNLLPVKTKDGTRG--TTDAYVVAKYGP---KWVRTRTILDRFN--PRWNEQYTWDVYDP------------ 650 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g--~sDpy~~~~~~~---~~~rT~~~~~t~n--P~Wne~~~~~v~~~------------ 650 (983)
|+|.|.+|+|++..+. +. .| .+||||.+.+.+ ...+|.+.++++| |.||+.|.|++.-+
T Consensus 2 LRViIw~~~~v~~~~~-~~-~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NI-TGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred EEEEEEECcCCccccc-cc-CCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 7899999999765443 22 45 499999999854 6789999999999 99999999987541
Q ss_pred ------------CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCC
Q 002002 651 ------------CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNR 692 (983)
Q Consensus 651 ------------~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 692 (983)
...|+|+|||+|.++ +|++||.+.++|..+..+.
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s--------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFS--------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccC--------CCCcceEEEEEhhhccccc
Confidence 247999999999988 7889999999999987654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-09 Score=96.53 Aligned_cols=90 Identities=39% Similarity=0.671 Sum_probs=79.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCe---EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ---RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
.|.|.|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|.+..+. ...|.|+||+.+..+
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~~ 77 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRFG 77 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc---cCEEEEEEEecCCcc
Confidence 37899999999998876678999999999874 899999999999999999999997753 689999999877664
Q ss_pred CCCCccEEEEEECccce
Q 002002 85 KRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~ 101 (983)
.+.++|.+.+++.++.
T Consensus 78 -~~~~~G~~~~~l~~~~ 93 (101)
T smart00239 78 -RDDFIGQVTIPLSDLL 93 (101)
T ss_pred -CCceeEEEEEEHHHcc
Confidence 6899999999998876
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.97 E-value=6e-09 Score=118.53 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=85.5
Q ss_pred cEEEEEEEceecccccc--ccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCCC-EEEEEE
Q 002002 587 IGLLEVGIRGATNLLPV--KTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPCT-VLTIGV 658 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~--~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~~-~l~i~v 658 (983)
...|.|+|+.|++++.- ++.+. ....||||.|.+.+ ...+|.+..++.||.|||+|+|++..|.- .|+|+|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~-~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGR-LSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCC-CCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEE
Confidence 46899999999998521 11122 45679999999854 45688877788999999999999988775 799999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecC
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLL 704 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 704 (983)
+|+|..+ .|+|+|+..+|++.|..|- +..||.+..
T Consensus 487 ~D~D~~~--------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~ 521 (537)
T PLN02223 487 YDYEVST--------ADAFCGQTCLPVSELIEGI---RAVPLYDER 521 (537)
T ss_pred EecCCCC--------CCcEEEEEecchHHhcCCc---eeEeccCCC
Confidence 9999876 6789999999999999996 567887653
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=118.49 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=92.6
Q ss_pred cEEEEEEEceecccccccc---CCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCC-CEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKT---KDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIG 657 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~---~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~ 657 (983)
...|.|+|+.|++|+.-.. .+. ....||||.+.+-+ ...+|+++.++.||.|||+|.|++..|. ..|.|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~-~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDS-YSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCc-cCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEE
Confidence 4679999999999853211 122 23459999998743 5679999999999999999999998775 479999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
|||+|..+ .|+++|+..+|++.|..|. +++||.+. .| ...+.+.|-++|.
T Consensus 548 V~D~D~~~--------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~--~G-~~l~~a~Llv~f~ 597 (599)
T PLN02952 548 VREYDMSE--------KDDFGGQTCLPVSELRPGI---RSVPLHDK--KG-EKLKNVRLLMRFI 597 (599)
T ss_pred EEecCCCC--------CCCeEEEEEcchhHhcCCc---eeEeCcCC--CC-CCCCCEEEEEEEE
Confidence 99999876 6789999999999999997 57888754 33 2235566666664
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.7e-09 Score=121.48 Aligned_cols=123 Identities=17% Similarity=0.311 Sum_probs=101.6
Q ss_pred cEEEEEEEEeeCCCCCC------------------CCCCCCeEEEEEECC-eEEeeeCcCCC-CCCeeeeEEEEEeeecC
Q 002002 7 RKLIVEVCNAKNLMPKD------------------GQGTASAYVIVDFDG-QRRRTKTKFRD-LNPQWDERLEFLVHDAE 66 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d------------------~~g~~dPyv~v~~~~-~~~~T~~~~~t-~nP~WnE~f~f~v~~~~ 66 (983)
+.|.|+|.+|++|+..+ ..+++||||+|.+++ ...||+++.+. .||.|||+|.+.+...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~- 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM- 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC-
Confidence 67899999999998521 235789999999988 67899999885 6999999999999876
Q ss_pred CCCCceEEEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceee-eEEEEEEEEecCC
Q 002002 67 SMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIK-GEIGLKVYYIDED 136 (983)
Q Consensus 67 ~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~-G~l~l~i~~~~~~ 136 (983)
...+.|.|-|++-+ ...+||.+.+|..++. .++..+.||++....++.... -.|++++.|.+..
T Consensus 87 ---~~~v~f~vkd~~~~--g~~~ig~~~~p~~~~~-~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 87 ---ASNIIFTVKDDNPI--GATLIGRAYIPVEEIL-DGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ---cceEEEEEecCCcc--CceEEEEEEEEHHHhc-CCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 68899999765555 4679999999999998 677899999998877654322 3899999998743
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=117.66 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=91.1
Q ss_pred CcEEEEEEEEeeCCCCC------CCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEE
Q 002002 6 NRKLIVEVCNAKNLMPK------DGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILE 74 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~ 74 (983)
...|.|+|+.|++|+.. +.....||||+|.+-| .+++|+++.++.||.|||+|.|.+..++ -..|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE---LAllr 545 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE---LALLR 545 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC---ccEEE
Confidence 36799999999987531 1112359999999854 6789999999999999999999998764 35789
Q ss_pred EEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 75 INLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 75 v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
|.|||++..+ .++|+|++.+|+..+. ...+|++|.+..+.....-.|.+++.+
T Consensus 546 f~V~D~D~~~-~ddfiGq~~lPv~~Lr----~GyR~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 546 IEVREYDMSE-KDDFGGQTCLPVSELR----PGIRSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EEEEecCCCC-CCCeEEEEEcchhHhc----CCceeEeCcCCCCCCCCCEEEEEEEEe
Confidence 9999887765 7999999999999987 345699998766544333455555543
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=116.51 Aligned_cols=118 Identities=20% Similarity=0.390 Sum_probs=96.8
Q ss_pred EEEEEEEEeeCCCCCCCC----CCCCeEEEEEECC-----eEEeee-CcCCCCCCeeeeEEEEEeeecCCCCCceEEEEE
Q 002002 8 KLIVEVCNAKNLMPKDGQ----GTASAYVIVDFDG-----QRRRTK-TKFRDLNPQWDERLEFLVHDAESMPTEILEINL 77 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~----g~~dPyv~v~~~~-----~~~~T~-~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V 77 (983)
.|.|.|+.++++.+.... ..+||||.|++-| .+.+|+ +..|+-||.|+|+|+|.+..|+ -..|.|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE---LAliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPE---LALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccc---eeEEEEEE
Confidence 599999999977765432 3579999999855 578899 5667899999999999999885 46789999
Q ss_pred EeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 78 YNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 78 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
+|++..+ +|+|+|++.+|+..|. .+.+.++|.++.+.....-.|.+++.+.
T Consensus 694 ~d~d~~~-~ddF~GQ~tlP~~~L~----~GyRhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 694 HDYDYIG-KDDFIGQTTLPVSELR----QGYRHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred EecCCCC-cccccceeeccHHHhh----CceeeeeecCCCCccccceeEEEEEEEe
Confidence 9887775 8999999999999987 4667788988877666667888888765
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-08 Score=110.91 Aligned_cols=122 Identities=28% Similarity=0.432 Sum_probs=104.2
Q ss_pred cEEEEEEEEeeCCCCCCCC-CCCCeEEEEEECCeEEeeeCcCCCCCCeee-eEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQ-GTASAYVIVDFDGQRRRTKTKFRDLNPQWD-ERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~~~~~T~~~~~t~nP~Wn-E~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
++|.|.|+.|++|+-+|.. ...|.||.+++.+..++|.+..+++||+|| +.|.|.+.+ .+++++.|.+.+.|+|..+
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevdd-adlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDD-ADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecCh-hhhccCCeeEEEecccccc
Confidence 6899999999999999874 357999999999999999999999999999 789999977 4688999999999988886
Q ss_pred CCCCccEEEEEECcccee---------cCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 85 KRSTFLGKVKIAGSTFAK---------VGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~---------~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
.+|-||++.|+++.+.- ++.....||++.+.-+ .++|||.+-+..
T Consensus 82 -andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih--girgeinvivkv 135 (1169)
T KOG1031|consen 82 -ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH--GIRGEINVIVKV 135 (1169)
T ss_pred -cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc--cccceeEEEEEE
Confidence 89999999999998751 3455678999987644 378998876654
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-08 Score=115.09 Aligned_cols=119 Identities=18% Similarity=0.321 Sum_probs=92.4
Q ss_pred CcEEEEEEEEeeCCCCC------CCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEE
Q 002002 6 NRKLIVEVCNAKNLMPK------DGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILE 74 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~ 74 (983)
...|.|+|+.+.+++.. +.....||||+|.+-| .+++|++..++.||.|||+|.|.+.-++ -..|.
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE---LAllR 544 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE---LALLR 544 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc---eeEEE
Confidence 36799999999987521 1223469999999944 5678999999999999999999998774 46789
Q ss_pred EEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 75 INLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 75 v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
|.|+|++... +|+|+|+..+|+..|. ...+.++|.++.+..-..-.|.+++.+
T Consensus 545 f~V~d~d~~~-~ddfiGQ~~lPv~~Lr----~GyR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 545 VEVHEHDINE-KDDFGGQTCLPVSEIR----QGIHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEECCCCC-CCCEEEEEEcchHHhh----CccceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999877665 8999999999999987 456678888776554333466666654
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.76 E-value=5e-08 Score=113.43 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=90.7
Q ss_pred cEEEEEEEceeccccccccC---CCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCC-CEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTK---DGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIG 657 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~---d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~ 657 (983)
...|.|+|+.+.+++....+ +. ....||||.|.+-+ ...+|++..++.||.|||+|.|++.-|. ..|+|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~-~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDS-YSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCC-CCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence 45799999999997532211 22 33569999999733 3568999999999999999999998876 489999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
|+|+|..+ +|+|||+..||++.|..|- +..+|.+....... .-.|-+.+.|
T Consensus 547 V~d~d~~~--------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDINE--------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred EEECCCCC--------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 99999876 6889999999999999986 45678765322222 2345555444
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.9e-08 Score=111.26 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=90.1
Q ss_pred cEEEEEEEceeccccc--cc-cCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCC-CEEEEE
Q 002002 587 IGLLEVGIRGATNLLP--VK-TKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIG 657 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~--~~-~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~ 657 (983)
...|.|+|+.|.+++- .+ ..+. ....||||.|.+.+ ...||+++.++.||.|||+|+|.+..|. ..|+|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~-~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQ-YSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCC-CCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEE
Confidence 4679999999998531 11 1122 34579999999743 4679999999999999999999998776 489999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
|+|+|..+ .|+|||+..+|++.|..|- +..||.+....... .-+|-+.+.|
T Consensus 530 V~d~D~~~--------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 530 VHEYDMSE--------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred EEECCCCC--------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 99999866 6789999999999999986 45678765322222 2345555443
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.5e-08 Score=109.60 Aligned_cols=120 Identities=27% Similarity=0.447 Sum_probs=99.1
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeece-EEEEEEecC---CCEEEEEEEeCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNE-QYTWDVYDP---CTVLTIGVFDNG 662 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne-~~~~~v~~~---~~~l~i~v~D~d 662 (983)
.|.|.|+|..|++||.||+. ...+|.||.+++++..++|.+..+++||.||. =|.|+|.|. ..+|.|.+.|+|
T Consensus 2 pgkl~vki~a~r~lpvmdka---sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKA---SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred CCcceeEEEeccCCcccccc---cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence 37889999999999999632 56789999999999999999999999999996 588888764 458999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEccccc----------CCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLD----------TNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
..+ .++-||++.|++..|. .|.+...|+|.-+. ..|. +|+|.+-++.
T Consensus 79 tys--------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt-ihgi--rgeinvivkv 135 (1169)
T KOG1031|consen 79 TYS--------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-IHGI--RGEINVIVKV 135 (1169)
T ss_pred ccc--------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee-cccc--cceeEEEEEE
Confidence 998 4558999999998874 24678899998765 3553 4888866554
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-08 Score=113.49 Aligned_cols=121 Identities=18% Similarity=0.250 Sum_probs=92.3
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeec-CCCCCeeceEEEEEEecCCC-EEEEEEEeC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTIL-DRFNPRWNEQYTWDVYDPCT-VLTIGVFDN 661 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~-~t~nP~Wne~~~~~v~~~~~-~l~i~v~D~ 661 (983)
+|.|+|++++|+++...+......+||||.+++.+ ...+|+++. ++.||.|+|+|+|++..|.- -|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 89999999998876432222135689999999855 466999555 56699999999999998874 899999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
|..+ +|+|+|+..+|+++|..|- +-.||....... -...+|-+.+.+.
T Consensus 697 d~~~--------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~-~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIG--------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEA-LSSASLFVRIAIV 744 (746)
T ss_pred CCCC--------cccccceeeccHHHhhCce---eeeeecCCCCcc-ccceeEEEEEEEe
Confidence 9988 7889999999999999986 346787653222 1235566665553
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.8e-08 Score=111.71 Aligned_cols=119 Identities=20% Similarity=0.281 Sum_probs=91.7
Q ss_pred CcEEEEEEEEeeCCC---CC---CCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEE
Q 002002 6 NRKLIVEVCNAKNLM---PK---DGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILE 74 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~---~~---d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~ 74 (983)
...|.|+|+.+.++. ++ +.....||||+|.+.| .+++|+++.++.||.|||+|.|.+..++ -..|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe---LAllR 527 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE---LALLR 527 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc---eeEEE
Confidence 357999999998753 11 1223579999999954 5789999999999999999999998774 46789
Q ss_pred EEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 75 INLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 75 v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
|.|+|+|... .++|+|+..+|+..+. .+.+.++|.+..+..-..-.|.+++.+
T Consensus 528 f~V~d~D~~~-~ddfigq~~lPv~~Lr----~GyR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 528 LEVHEYDMSE-KDDFGGQTCLPVWELS----QGIRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEECCCCC-CCcEEEEEEcchhhhh----CccceEEccCCCcCCCCCeeEEEEEEe
Confidence 9999877665 7999999999999987 456778888776554333466666644
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.5e-08 Score=111.11 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=95.1
Q ss_pred cEEEEEEEEeeCCC---CCC---CCCCCCeEEEEEECC-----eEEeeeCcCCCCCCee-eeEEEEEeeecCCCCCceEE
Q 002002 7 RKLIVEVCNAKNLM---PKD---GQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQW-DERLEFLVHDAESMPTEILE 74 (983)
Q Consensus 7 ~~L~V~v~~a~~L~---~~d---~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W-nE~f~f~v~~~~~l~~~~L~ 74 (983)
..|.|+|++|++|+ +.+ .....||||+|.+.| .+++|+++.++.||.| ||+|.|.+..++ -..|.
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE---LA~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE---LALLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc---eeEEE
Confidence 46999999999873 122 123479999999854 5679999999999999 999999998774 45789
Q ss_pred EEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 75 INLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 75 v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
|.|+|++..+ .++|+|++.+|+..|. .+.+.++|.+..+..-....|.+++.+.+
T Consensus 508 f~V~D~d~~~-~d~figq~~lPv~~Lr----~GYR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 508 FKVQDYDNDT-QNDFAGQTCLPLPELK----SGVRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEEEeCCCCC-CCCEEEEEEcchhHhh----CCeeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9999877665 8999999999999986 45678889877665545578888887653
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.4e-08 Score=86.47 Aligned_cols=86 Identities=27% Similarity=0.388 Sum_probs=69.2
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDE 668 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~ 668 (983)
|.|+|..|+++.-...... .++.|||+++++++. ..||++ +.||.|||.|.|+| +....+.|.|||....
T Consensus 1 L~I~V~~~RdvdH~~~~~~-~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~~---- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRF-SKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGGD---- 71 (109)
T ss_pred CEEEEEEEecCccccchhh-ccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCCC----
Confidence 5789999999943321113 778899999999985 899998 48999999999999 6688999999998653
Q ss_pred CCCCCCCceeEEEEEEccccc
Q 002002 669 AGKPGKDVRVGKIRVRLSTLD 689 (983)
Q Consensus 669 ~~~~~~d~~lG~~~i~l~~l~ 689 (983)
..-.||-.=+++++|.
T Consensus 72 -----~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 72 -----QPVPVGLLWLRLSDIA 87 (109)
T ss_pred -----eecceeeehhhHHHHH
Confidence 3557898888888875
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-07 Score=108.72 Aligned_cols=122 Identities=18% Similarity=0.193 Sum_probs=91.9
Q ss_pred cEEEEEEEceeccccc---cccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCee-ceEEEEEEecCC-CEEEE
Q 002002 587 IGLLEVGIRGATNLLP---VKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRW-NEQYTWDVYDPC-TVLTI 656 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~---~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~W-ne~~~~~v~~~~-~~l~i 656 (983)
...|.|+|++|++|+. ....+. ....||||.+.+.+ ...||+++.++.||.| ||+|.|.+..|. ..|+|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~-~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQ-YSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCC-CCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEE
Confidence 4579999999999732 111122 33479999999743 4579999999999999 999999998776 48999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
.|+|+|..+ .|++||+..||++.|..|- +..+|.+...... ...+|-+.+.+.
T Consensus 509 ~V~D~d~~~--------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~ 561 (567)
T PLN02228 509 KVQDYDNDT--------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALD 561 (567)
T ss_pred EEEeCCCCC--------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEc
Confidence 999999776 6789999999999999886 4568876533222 235577766653
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.7e-08 Score=84.36 Aligned_cols=83 Identities=22% Similarity=0.350 Sum_probs=69.0
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 9 LIVEVCNAKNLMPKD---GQGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 9 L~V~v~~a~~L~~~d---~~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
|.|+|.+|+|+.-.+ ..+.++|||.+++++ ++.||++ +.||.|||+|.|.+.. ...+++.|||...-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-----~nEiel~VyDk~~~- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-----NNEEEVIVYDKGGD- 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-----CcEEEEEEEeCCCC-
Confidence 679999999998877 467899999999988 5899988 4799999999999943 68999999964322
Q ss_pred CCCCccEEEEEECccce
Q 002002 85 KRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~ 101 (983)
..--+|...+.++++.
T Consensus 72 -~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 72 -QPVPVGLLWLRLSDIA 87 (109)
T ss_pred -eecceeeehhhHHHHH
Confidence 4567888888888876
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.8e-07 Score=103.65 Aligned_cols=118 Identities=20% Similarity=0.275 Sum_probs=89.3
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC------eEEeeeCcCCCCCCeee-eEEEEEeeecCCCCCceEEEEEEe
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG------QRRRTKTKFRDLNPQWD-ERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~Wn-E~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..|.|.|+.|+.|+. .+.|-+.|||.|++-| ..++|.+..|.+||+|| |+|+|.+.+|+ -..|.|.|++
T Consensus 1065 ~~lsv~vigaRHL~k-~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe---~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK-LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE---FAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc-CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc---eEEEEEEEec
Confidence 578899999999984 4556778999999843 45566777889999999 99999999985 6789999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
.|-++ ...|||++.+|+..+. ...+-.+|.+.-...-.-..|.+.+...
T Consensus 1141 eDmfs-~~~FiaqA~yPv~~ik----~GfRsVpLkN~ySEdlELaSLLv~i~m~ 1189 (1267)
T KOG1264|consen 1141 EDMFS-DPNFLAQATYPVKAIK----SGFRSVPLKNGYSEDLELASLLVFIEMR 1189 (1267)
T ss_pred ccccC-Ccceeeeeecchhhhh----ccceeeecccCchhhhhhhhheeeeEec
Confidence 88886 6679999999999886 3445667765522111234555555443
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.6e-08 Score=109.90 Aligned_cols=97 Identities=27% Similarity=0.449 Sum_probs=82.4
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-------eEEeeeCcCCCCCCeeeeEEEEEeeecC-CCCCceEEE
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-------QRRRTKTKFRDLNPQWDERLEFLVHDAE-SMPTEILEI 75 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~t~nP~WnE~f~f~v~~~~-~l~~~~L~v 75 (983)
.....|.|.|+.|+++.+-|.+|.+||||+|++.. ..++|+|+.+|+||+|+|+|+|.|.... .-...-|.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 44578999999999999999999999999999964 4689999999999999999999997532 222556899
Q ss_pred EEEeCCCCCCCCCccEEEEEECccce
Q 002002 76 NLYNDKKTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 76 ~V~~~~~~~~~d~~lG~~~i~l~~l~ 101 (983)
+|+|.|-.. .+||-|++.+.|..+.
T Consensus 1024 TVMDHD~L~-sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1024 TVMDHDYLR-SNDFAGEAFLELGDVP 1048 (1103)
T ss_pred Eeeccceec-ccccchHHHHhhCCCC
Confidence 999877665 8999999999888765
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=102.48 Aligned_cols=121 Identities=19% Similarity=0.196 Sum_probs=91.1
Q ss_pred CcEEEEEEEceecccccccc-CCCCCCCCCcEEEEEECCE-EEEeeeecCCCCCeeceEEEEEEecCC-CEEEEEEEeCC
Q 002002 586 PIGLLEVGIRGATNLLPVKT-KDGTRGTTDAYVVAKYGPK-WVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIGVFDNG 662 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~-~d~~~g~sDpy~~~~~~~~-~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~v~D~d 662 (983)
.-|.|.++|++|+-+...-. .+......|||+.+.+++. ..|| .+.-||+|||.|.+++..+. ..++|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 45889999999984321100 0110122399999999884 5588 55669999999999999888 689999998
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCCe-EEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV-YLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
+ -.+||++.||+.+|..|.. ...|||+.....+..+ ...|++.++|+..
T Consensus 83 --~---------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~ 132 (758)
T PLN02352 83 --K---------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNP-ELKLRFMLWFRPA 132 (758)
T ss_pred --C---------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCC-CCEEEEEEEEEEh
Confidence 2 2489999999999999865 8999999976543322 2589999999874
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-06 Score=99.16 Aligned_cols=100 Identities=21% Similarity=0.322 Sum_probs=81.4
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEee-eecCCCCCeec-eEEEEEEecCCC-EEEEEEE
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTR-TILDRFNPRWN-EQYTWDVYDPCT-VLTIGVF 659 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~-~~~~t~nP~Wn-e~~~~~v~~~~~-~l~i~v~ 659 (983)
-.|.|.|+.|+.|+. .+ .|...|||+|++-+ ..++|. ++.+.+||+|| |.|+|.+.+|.- -|++.|+
T Consensus 1065 ~~lsv~vigaRHL~k----~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVY 1139 (1267)
T ss_pred eEEEEEEeecccccc----CC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEe
Confidence 478999999999972 23 66778999999743 455555 55567799999 999999999875 8999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
|.|.++ ...|||++..|+..|..|- +..||++.
T Consensus 1140 eeDmfs--------~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ 1172 (1267)
T KOG1264|consen 1140 EEDMFS--------DPNFLAQATYPVKAIKSGF---RSVPLKNG 1172 (1267)
T ss_pred cccccC--------Ccceeeeeecchhhhhccc---eeeecccC
Confidence 999998 3449999999999999885 67788754
|
|
| >PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.7e-06 Score=94.23 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=112.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccCCchhhHHHHHHHHHHhh-------------------hhc-cccccCCCCC
Q 002002 793 RSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTILVHVLLVAVVL-------------------SLR-FRYRQRVPQN 852 (983)
Q Consensus 793 ~~~~n~~R~~~~~~~~~~~~~~~~~~~~W~~~~~s~~~~~~~~~~v~-------------------~~~-y~~~~~~~~~ 852 (983)
..-.|+.=+++++.++..++.||..+..|+.|..|+...+++.+++| +|. |..+.+.+
T Consensus 484 GI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~-- 561 (683)
T PF04842_consen 484 GIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGKS-- 561 (683)
T ss_pred CCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc--
Confidence 34569999999999999999999999999999999888777666554 221 10011100
Q ss_pred CCCCCCcccCCCCCccccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccccChhhHHHHHHHHH
Q 002002 853 MDPRLSYVDVVGPDELDEEFDGFPTSRPSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCL 932 (983)
Q Consensus 853 ~d~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~r~~~l~~~~~~vQ~~~~~~a~~~Er~~~l~~w~~p~~t~~~~~~~~ 932 (983)
-++. ++. ..++..-.++.=++|+-..++.+.+..+=-.+=|+++++-|..|.+|-.+.+.++
T Consensus 562 ----------------~~~v-~V~-~pP~~nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll 623 (683)
T PF04842_consen 562 ----------------FGEV-TVR-DPPPKNTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALL 623 (683)
T ss_pred ----------------cceE-Eec-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 0111 111 1122233566777777788888888888888999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhheeeec-ccCCCCCCC
Q 002002 933 VASLVFYAVPFKLFVLGSGFYY-LRHPRFRGD 963 (983)
Q Consensus 933 ~~~~~l~~vp~r~~~~~~g~~~-~r~p~~~~~ 963 (983)
++|+++.++|+||++++.-+.. .|+=.+|..
T Consensus 624 ~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~ 655 (683)
T PF04842_consen 624 GLAAVLAVVPFKYILLFVFLEVFTRESPFRRE 655 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCchh
Confidence 9999999999999999988776 344336654
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-05 Score=95.55 Aligned_cols=118 Identities=14% Similarity=0.276 Sum_probs=88.8
Q ss_pred cEEEEEEEEeeCCCCCCC----C-CCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 7 RKLIVEVCNAKNLMPKDG----Q-GTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~----~-g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
+.|.++|.+|+-+...-. . ...+|||+|.+++ ...|| .+.-||.|+|+|.+.+...- ...+.|.|-|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~---~~~~~f~vk~- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPL---DSTITITLKT- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeec---CCcEEEEEec-
Confidence 679999999984433211 1 1239999999988 56788 55669999999999997751 2579999953
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecCC
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDED 136 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~ 136 (983)
...+||.+.+|..++...+...+.||++....++......|++++.|.+..
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 257999999999999843344899999988776643224999999998643
|
|
| >PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-05 Score=90.76 Aligned_cols=161 Identities=19% Similarity=0.283 Sum_probs=104.9
Q ss_pred eehhhhhHHHHHHHHHHHHHHHHH---HHhhcccccCCchhhHHHHHHHHHHhh-------------------hhccccc
Q 002002 789 WSMRRSKANWFRVVGCLTRAATLA---RWLDGIRTWAHTPTTILVHVLLVAVVL-------------------SLRFRYR 846 (983)
Q Consensus 789 ~s~~~~~~n~~R~~~~~~~~~~~~---~~~~~~~~W~~~~~s~~~~~~~~~~v~-------------------~~~y~~~ 846 (983)
+|...+.+|+.|+.+.+..+..+. ..+.++++|++|..|..+.++|.++|+ +..|..+
T Consensus 3 lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll~~il~~~yl~~ 82 (359)
T PF06398_consen 3 LSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLLFGILLPSYLYR 82 (359)
T ss_pred cChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 577888999999999999998888 999999999999777666665554443 1223222
Q ss_pred cCCCCCCCCCCCcccCCCCCccccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhh----hccccChh
Q 002002 847 QRVPQNMDPRLSYVDVVGPDELDEEFDGFPTSRPSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEA----LFNWRDPR 922 (983)
Q Consensus 847 ~~~~~~~d~~~s~~~~~~~~~~~~e~d~~~~~~~~~~~~~r~~~l~~~~~~vQ~~~~~~a~~~Er~~~----l~~w~~p~ 922 (983)
+|..... +.. ...+.+.+.+..| .+......+....+.+||.++.+.+....+.. .++|+++.
T Consensus 83 --~p~~~~~-~~~----~~~~~~~~~~~~p------tl~~~s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~~e~ 149 (359)
T PF06398_consen 83 --HPSPTSS-LPK----SYEDHNPEPSEGP------TLDKPSREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNFSDEN 149 (359)
T ss_pred --cCCCccc-ccc----cccccCCCcCCCC------CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccc
Confidence 1111100 000 0001111111111 11111234555667889999988888887764 55699999
Q ss_pred hHHHHHHHHHHHHHHHh----hhhhhhhhhheeeec-ccCCCCCC
Q 002002 923 ATWIFVVLCLVASLVFY----AVPFKLFVLGSGFYY-LRHPRFRG 962 (983)
Q Consensus 923 ~t~~~~~~~~~~~~~l~----~vp~r~~~~~~g~~~-~r~p~~~~ 962 (983)
.|.++.++|+++.+.++ ++|.|++++++|... +-||..+.
T Consensus 150 ~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 150 LSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 99999888887777654 679999999999443 56777764
|
Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p []. |
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.5e-05 Score=72.73 Aligned_cols=111 Identities=20% Similarity=0.316 Sum_probs=78.9
Q ss_pred EEEEEceecccccccc------CCC---CCCCCCcEEEEEEC----CEEEEeeeecCCCCCeeceEEEEEEe--------
Q 002002 590 LEVGIRGATNLLPVKT------KDG---TRGTTDAYVVAKYG----PKWVRTRTILDRFNPRWNEQYTWDVY-------- 648 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~------~d~---~~g~sDpy~~~~~~----~~~~rT~~~~~t~nP~Wne~~~~~v~-------- 648 (983)
|.|.|++|.||.++-. .+. ..-..++||.+.+. .+..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678889999854211 010 01235899999853 47889999999999999999999875
Q ss_pred cC--------CCEEEEEEEeCCCCCCcC--CCCCCCCceeEEEEEEcccccCCC-eEEEEEEe
Q 002002 649 DP--------CTVLTIGVFDNGRYKRDE--AGKPGKDVRVGKIRVRLSTLDTNR-VYLNSYSL 700 (983)
Q Consensus 649 ~~--------~~~l~i~v~D~d~~~~~~--~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L 700 (983)
+. ...+.++||..+.-+..+ ......|-.||.+.||+.+|...+ -.+.|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 21 247999999988754211 011357889999999999987543 35789875
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.87 E-value=1e-05 Score=96.72 Aligned_cols=109 Identities=24% Similarity=0.269 Sum_probs=89.0
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
+++|.|-|..|++|.-...+..+||||+..+-- -+++|+++++|.||.|||.+.......+.+....|.+.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 578999999999996554455799999999942 478899999999999999998885554556678999999977
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
+... .+.|+|.+.++|..+. ...+...||.|...
T Consensus 1603 ~~~~-en~~lg~v~i~L~~~~-l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLL-ENVFLGGVNIPLLKVD-LLKESVGWYNLGAC 1636 (1639)
T ss_pred ccee-eeeeeeeeecchhhcc-hhhhhcceeecccc
Confidence 7665 7899999999999886 33455589999765
|
|
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00017 Score=83.69 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=47.4
Q ss_pred CCcceeehhhhhHHHHHHHH-HHHHHHHHHHHhhcccccCCchhhHHHHHHHHHH
Q 002002 784 TDTHVWSMRRSKANWFRVVG-CLTRAATLARWLDGIRTWAHTPTTILVHVLLVAV 837 (983)
Q Consensus 784 ~~~~~~s~~~~~~n~~R~~~-~~~~~~~~~~~~~~~~~W~~~~~s~~~~~~~~~~ 837 (983)
.+...||..++++|+.|+-- ++-++.++.+.+..+.+|+.|.+|....++|+++
T Consensus 83 a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~a 137 (642)
T PF11696_consen 83 AEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIA 137 (642)
T ss_pred cccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH
Confidence 46788999999999999976 7789999999999999999999998887776543
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00053 Score=78.10 Aligned_cols=178 Identities=13% Similarity=0.178 Sum_probs=115.5
Q ss_pred eeeeec--CC-CccceEEEEeecCCCCCeEEEEEEcCCcCCccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccC
Q 002002 304 IKTKSQ--AD-KDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESE 380 (983)
Q Consensus 304 ~kTk~~--~~-P~Wne~f~f~~~~~~~~~l~v~V~d~d~~~~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~ 380 (983)
.+|.++ .+ |.|-+.|.+...-...+.|++.++|.+....++...+|+|++...++.+........++ .++..
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l-----~~~~~ 117 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPL-----LLKPG 117 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhh-----hcccC
Confidence 478777 55 99999988764333367899999997743334668899999999999887544322111 12211
Q ss_pred -CCCCceEEEEEEeccCcchhhhhhcccCCCCCCcccccccccCCceEEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEE
Q 002002 381 -KLPGNDVMLAVWIGTQADEAFQEAWQSDSGGLIPETRAKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQ 459 (983)
Q Consensus 381 -~~~~g~i~l~~~~g~~~de~~~~~~~s~~~~~~~~~~~~~~~~p~l~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~ 459 (983)
....|.|.+.+- .+.++ +. ...-.++|++|... |..+++|||..++
T Consensus 118 ~~~~~g~iti~ae-----------e~~~~----------------~~--~~~~~~~~~~ld~k----d~f~ksd~~l~~~ 164 (529)
T KOG1327|consen 118 KNAGSGTITISAE-----------EDESD----------------ND--VVQFSFRAKNLDPK----DFFSKSDPYLEFY 164 (529)
T ss_pred ccCCcccEEEEee-----------ccccc----------------Cc--eeeeeeeeeecCcc----cccccCCcceEEE
Confidence 112355544441 01110 00 11123457888877 8899999998774
Q ss_pred E--C----CeEEEeeeeeeccCCCCCCCCcccceEE-E--EecCCCCCcEEEEEEeCc---CCceeEEEEEecccccc
Q 002002 460 L--G----AQLFKTGRTSVGLSPSSSANPTWNEDLV-F--VAAEPFEPFLVVTVEDVT---NGCSVGHARIQMSTVER 525 (983)
Q Consensus 460 l--g----~~~~rT~~~~~~~~~~~t~nP~wne~f~-f--~~~~~~~~~L~i~V~D~d---~d~~lG~~~i~L~~l~~ 525 (983)
= + ...+||.+.+ +++||.|..... + ......+..+.+.+||.+ +++++|++..+++++..
T Consensus 165 ~~~~d~s~~~~~~tEv~~------n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 165 KRVDDGSTQMLYRTEVVK------NTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred EecCCCceeeccccceec------cCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 3 2 2457898885 599999987421 1 111122457889999988 67999999999999864
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00016 Score=86.94 Aligned_cols=100 Identities=26% Similarity=0.291 Sum_probs=81.7
Q ss_pred cCEEEEEEEEeecCC---CCCCCCcEEEEEEcCe-----eeeeeec--CC-CccceEEEEe---ecCCCCCeEEEEEEcC
Q 002002 272 MPFLYVRVLKAKRAG---NVSNGSLYAKLVIGTH-----SIKTKSQ--AD-KDWDQVFAFD---KEGLNSTSLEVSVWSE 337 (983)
Q Consensus 272 ~~~L~V~v~~a~~L~---~~~~~dPyv~v~~~~~-----~~kTk~~--~~-P~Wne~f~f~---~~~~~~~~l~v~V~d~ 337 (983)
.+.|.|-|..|++|+ .+..+||||+.++-.. +.|||++ +. |.|||.+.+. ++.++...|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 488999999999996 2346799999999643 4789988 88 9999988854 6777788999999997
Q ss_pred CcCCccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccC
Q 002002 338 EKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESE 380 (983)
Q Consensus 338 d~~~~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~ 380 (983)
+. +..+.+||.+.++|.++...+. ...||+|...
T Consensus 1603 ~~----~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GG----LLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGAC 1636 (1639)
T ss_pred cc----eeeeeeeeeeecchhhcchhhh-----hcceeecccc
Confidence 63 6689999999999998877654 2489999653
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.36 E-value=9.8e-05 Score=67.50 Aligned_cols=105 Identities=24% Similarity=0.399 Sum_probs=76.7
Q ss_pred EEEEEEEeeCCCCCC-------C--C----CCCCeEEEEEE----CCeEEeeeCcCCCCCCeeeeEEEEEeee-------
Q 002002 9 LIVEVCNAKNLMPKD-------G--Q----GTASAYVIVDF----DGQRRRTKTKFRDLNPQWDERLEFLVHD------- 64 (983)
Q Consensus 9 L~V~v~~a~~L~~~d-------~--~----g~~dPyv~v~~----~~~~~~T~~~~~t~nP~WnE~f~f~v~~------- 64 (983)
|.|.|.+|.+|...- . . =-.|+||++.+ +++..+|+++-++.-|.|+-+++|.+.-
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 468889998887421 0 0 02589999986 3478899999999999999999998751
Q ss_pred -----cCCCCCceEEEEEEeCCCCC---------CCCCccEEEEEECccceecCCeeeEEEEc
Q 002002 65 -----AESMPTEILEINLYNDKKTG---------KRSTFLGKVKIAGSTFAKVGSESSVYYPL 113 (983)
Q Consensus 65 -----~~~l~~~~L~v~V~~~~~~~---------~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (983)
.+.|....+.++||+...-+ .+|-+||.+.||+.+|.....-...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 12345778999999754321 14558999999999998544445678874
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.039 Score=60.91 Aligned_cols=239 Identities=15% Similarity=0.250 Sum_probs=145.4
Q ss_pred EEEEEEEeecCCCCCCCCcEEEEEEcCeeeeeeec--CC-CccceEEEEeec-------CCCCCeEEEEEEcCCcCCccc
Q 002002 275 LYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQ--AD-KDWDQVFAFDKE-------GLNSTSLEVSVWSEEKKENEE 344 (983)
Q Consensus 275 L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kTk~~--~~-P~Wne~f~f~~~-------~~~~~~l~v~V~d~d~~~~d~ 344 (983)
+.|+|++|++.+....-.-+++.+++|+...|..+ +. |.||...++..+ ..+..+|.+++|..|.. -
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~---~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS---T 78 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC---C
Confidence 67899999997755455778999999999999987 55 999999998754 44688999999987621 3
Q ss_pred cCCceeEEEEEeccccCCCCCCCCCCCCceEEcccC----CCCCceEEEEEEeccCcch---hhhh-hccc--CCCC---
Q 002002 345 CTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESE----KLPGNDVMLAVWIGTQADE---AFQE-AWQS--DSGG--- 411 (983)
Q Consensus 345 ~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~----~~~~g~i~l~~~~g~~~de---~~~~-~~~s--~~~~--- 411 (983)
...+.+|++.+||.........+...++.||+|-+. .+.+-+|.+.+.+...... .+.. .+.. +..+
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 578999999999988722222333567899999876 2346777777765332221 0000 0000 0000
Q ss_pred ----CCcc-------ccccccc-------CCceEEEEEEEEEeeCCCCCCCCC--CCCCCCCcEEEEEE-CCeEEEeeee
Q 002002 412 ----LIPE-------TRAKVYL-------SPKLWYLRLTVIQTQDLQPGSGSE--PKVRSPELYVKGQL-GAQLFKTGRT 470 (983)
Q Consensus 412 ----~~~~-------~~~~~~~-------~p~l~~L~V~Viea~~L~~~~~~~--d~~~~sdpyv~v~l-g~~~~rT~~~ 470 (983)
.... .....+. ...+..|.|++-.|.+|....... +..+.+..|....+ |+. ..|...
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~-Vt~~~F 237 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND-VTTEPF 237 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE-eEeeec
Confidence 0000 0000000 123566999999999876431100 11123455555655 553 444444
Q ss_pred eeccCCCCCCCCccc--ceEEEEec---------CCCCCcEEEEEEeCcCCceeEEEEEecccccc
Q 002002 471 SVGLSPSSSANPTWN--EDLVFVAA---------EPFEPFLVVTVEDVTNGCSVGHARIQMSTVER 525 (983)
Q Consensus 471 ~~~~~~~~t~nP~wn--e~f~f~~~---------~~~~~~L~i~V~D~d~d~~lG~~~i~L~~l~~ 525 (983)
. ...+|.|. +...+.+. ......|.|.++- .+..||.+.|++..+..
T Consensus 238 ~------~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~--g~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 238 K------SLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC--GNQSLGSTSVPLQPLLP 295 (340)
T ss_pred c------ccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee--CCcEEEEEEEEhhhccC
Confidence 3 24566543 33323332 1223467777766 47889999999999864
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00039 Score=82.58 Aligned_cols=88 Identities=24% Similarity=0.326 Sum_probs=72.9
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEE-EECCEEEEeeeecCCCCCeeceEEEEEEecCC-CEEEEEEEeCC
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVA-KYGPKWVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIGVFDNG 662 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~-~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~v~D~d 662 (983)
.-.|...+++++|+ |+ . .|+|+++ .+|.+.+||.+.++|+||+||+...|.|.... ...+|.|||++
T Consensus 51 ~~~~~~~~~~~~~~----~~---~----~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---F----KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETN 119 (644)
T ss_pred cccCeEEEEeehhh----hc---c----CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecC
Confidence 35789999999987 32 2 4888865 57889999999999999999999999996533 35799999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCC
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDTN 691 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 691 (983)
.++ +++++|.+.++|..+...
T Consensus 120 ~~s--------~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 120 RLS--------KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCC--------HHHhhhheeecHhhccHH
Confidence 998 788999999988877543
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0011 Score=78.97 Aligned_cols=88 Identities=17% Similarity=0.335 Sum_probs=72.5
Q ss_pred cCCCcEEEEEEEEeeCCCCCCCCCCCCeE-EEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 3 ESCNRKLIVEVCNAKNLMPKDGQGTASAY-VIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 3 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPy-v~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
+.-.+.+.+++++|+ ++ ..||| +.+.++.+.+||.+.++|+||+||+...|.+...+ .....+.||+.+
T Consensus 50 ~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~ 119 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNG---PHLARISVFETN 119 (644)
T ss_pred ccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCC---cceEEEEEEecC
Confidence 344577889999987 22 35886 56788889999999999999999999999986643 445699999988
Q ss_pred CCCCCCCccEEEEEECccce
Q 002002 82 KTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~ 101 (983)
+++ .++++|.+.+++..+.
T Consensus 120 ~~s-~n~lv~~~e~~~t~f~ 138 (644)
T PLN02964 120 RLS-KNTLVGYCELDLFDFV 138 (644)
T ss_pred CCC-HHHhhhheeecHhhcc
Confidence 886 8999999999998887
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00061 Score=57.79 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=70.1
Q ss_pred EEEEEEeeCCCCCCCCC-CCCeEEE--EEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 10 IVEVCNAKNLMPKDGQG-TASAYVI--VDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 10 ~V~v~~a~~L~~~d~~g-~~dPyv~--v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
-++|+.|++|.=-..-| ...-|++ +.+.. ...+|+.++...||.|.|+|.|.+.. ..+.+-.|-|.|+. ...
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l-~qL~~V~L~fsv~~--~~~- 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKL-QNLQTVRLVFKIQT--QTP- 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHH-hhccceEEEEEeec--cCC-
Confidence 47899999987432222 2334554 34444 68899999999999999999999865 35667789999986 343
Q ss_pred CCCccEEEEEECccceecCCeeeEEEE
Q 002002 86 RSTFLGKVKIAGSTFAKVGSESSVYYP 112 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~w~~ 112 (983)
+...||.+.+.+.++- .+....|..
T Consensus 78 RKe~iG~~sL~l~s~g--eeE~~HW~e 102 (103)
T cd08684 78 RKRTIGECSLSLRTLS--TQETDHWLE 102 (103)
T ss_pred ccceeeEEEeecccCC--HHHhhhhhc
Confidence 6789999999999864 244555643
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0005 Score=73.87 Aligned_cols=109 Identities=23% Similarity=0.325 Sum_probs=88.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCC-CCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQG-TASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g-~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
..+.|.|.|++|++|..+.+.+ .++|||+|++-+ .+.+|+...+|++|.+.+...|.-..+ ...|.+.||
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~----~k~Lq~tv~ 342 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP----GKYLQGTVW 342 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC----ccEEEEEEe
Confidence 4568999999999999887654 589999999832 577899999999999999988887766 789999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
-+..-...+.|+|.+.+-+.++-........||+|...+
T Consensus 343 gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 343 GDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 644322256899999999999875555788999997654
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00066 Score=73.43 Aligned_cols=124 Identities=15% Similarity=0.233 Sum_probs=92.6
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecC--------CCCCceE
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAE--------SMPTEIL 73 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~--------~l~~~~L 73 (983)
..|.+.|+++.++.-..+.--.|-||+++|- .++.+|.++++|.+|.|+|.|-+++.... .+....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 4566778888877654433345789999882 26788999999999999999999986511 1235679
Q ss_pred EEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 74 EINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 74 ~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
.|++|+...+.++|.|+|.+.+.+..|. .......+|+|.+.. ..+.|.|.+++.+-
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Le-n~cei~e~~~l~DGR--K~vGGkLevKvRiR 503 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILE-NMCEICEYLPLKDGR--KAVGGKLEVKVRIR 503 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhh-cccchhhceeccccc--cccCCeeEEEEEEe
Confidence 9999998888889999999999999876 334455678876542 24668888888664
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0019 Score=54.84 Aligned_cols=95 Identities=23% Similarity=0.389 Sum_probs=66.5
Q ss_pred EEEEEEeeCCCCCCCCCCCCCCCCcEEEEEE--CC-eEEEeeeeeeccCCCCCCCCcccceEEEEecCCC--CCcEEEEE
Q 002002 430 RLTVIQTQDLQPGSGSEPKVRSPELYVKGQL--GA-QLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPF--EPFLVVTV 504 (983)
Q Consensus 430 ~V~Viea~~L~~~~~~~d~~~~sdpyv~v~l--g~-~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~--~~~L~i~V 504 (983)
-|+|+.|+||.-.. .-...+..|++--+ .. ...||.... .+.||.|.|+|.|.+.... +-.|.|+|
T Consensus 2 witv~~c~d~s~~~---~~~e~~~i~ikg~~tl~kpv~~KsS~rr------gs~d~~f~ETFVFqi~l~qL~~V~L~fsv 72 (103)
T cd08684 2 WITVLKCKDLSWPS---SCGENPTIYIKGILTLPKPVHFKSSAKE------GSNDIEFMETFVFAIKLQNLQTVRLVFKI 72 (103)
T ss_pred EEEEEEeccccccc---ccCcCCeeEEEEEEecCCCccccchhhc------CCCChhHHHHHHHHHHHhhccceEEEEEe
Confidence 47899999987531 22334566777655 22 334555442 6899999999999876444 44788999
Q ss_pred EeCc-CCceeEEEEEecccccccccCCCCCcceEEe
Q 002002 505 EDVT-NGCSVGHARIQMSTVERRIDDRAEPKSRWFN 539 (983)
Q Consensus 505 ~D~d-~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~ 539 (983)
+..- +.+.||.|.+.|.++..+ ...+|.+
T Consensus 73 ~~~~~RKe~iG~~sL~l~s~gee------E~~HW~e 102 (103)
T cd08684 73 QTQTPRKRTIGECSLSLRTLSTQ------ETDHWLE 102 (103)
T ss_pred eccCCccceeeEEEeecccCCHH------Hhhhhhc
Confidence 9865 899999999999988653 3455654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.03 Score=54.17 Aligned_cols=131 Identities=19% Similarity=0.232 Sum_probs=87.9
Q ss_pred CCCcEEEEEEEEeeCCCCCCCC--CCCC--eEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecC--------C--CC
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQ--GTAS--AYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAE--------S--MP 69 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~--g~~d--Pyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~--------~--l~ 69 (983)
.+...|+++|..++-....... |..+ -.+-+.|++|+++|+.+..+.+|.++|.|.|.+.... . ..
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 3457899999998766543221 2333 3455667899999999999999999999999986532 0 12
Q ss_pred CceEEEEEEeCCCCCCCCCccEEEEEECccceecCCe-eeEEEEceecCCcce-eeeEEEEEEEEecC
Q 002002 70 TEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSE-SSVYYPLEKRSVFSQ-IKGEIGLKVYYIDE 135 (983)
Q Consensus 70 ~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~-~~~w~~L~~~~~~s~-~~G~l~l~i~~~~~ 135 (983)
.+.|.+.|..-+..+ ...++|+..++-..+...+.. ...-..|...+..++ ..|-|.+++.+.+.
T Consensus 86 ~~pihivli~~d~~~-~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSG-ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCceEEEEEEecCCC-ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 456777777555544 458999999998887733221 123334444433322 67999999987753
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0018 Score=69.82 Aligned_cols=108 Identities=21% Similarity=0.261 Sum_probs=85.3
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-C----EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-P----KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVF 659 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-~----~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~ 659 (983)
..+|.|+|.|++|++|.+. -+....++||+.|++- + ...+|+...+|++|.+..+..|.-.-+...|.+.||
T Consensus 266 d~~g~l~vEii~ar~l~~k---~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~ 342 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVK---PGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVW 342 (405)
T ss_pred cccCceeEEEEeccccccc---CCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEe
Confidence 3589999999999999763 1213478999999973 3 355899999999999988888887777789999998
Q ss_pred eCC-CCCCcCCCCCCCCceeEEEEEEcccccCCC-eEEEEEEeeec
Q 002002 660 DNG-RYKRDEAGKPGKDVRVGKIRVRLSTLDTNR-VYLNSYSLTVL 703 (983)
Q Consensus 660 D~d-~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 703 (983)
-.- .. .++.|+|-+.|.+.+|.-.. ....||+|...
T Consensus 343 gdygRm--------d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 343 GDYGRM--------DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cccccc--------chHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 532 22 36789999999999998655 67899988754
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0042 Score=67.42 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=89.9
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeeceEEEEEEec---CC---------
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-----PKWVRTRTILDRFNPRWNEQYTWDVYD---PC--------- 651 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-----~~~~rT~~~~~t~nP~Wne~~~~~v~~---~~--------- 651 (983)
.|++.|+++.+++... + ....|-|+.+++- ....+|.++++|.+|.|+|.|.+.+.. .+
T Consensus 368 elel~ivrg~~~pvp~---g-p~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPG---G-PMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred HhHHHHhhcccCCCCC---C-chhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 5777888888886541 1 2234788888752 256799999999999999999999865 11
Q ss_pred CEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecC-CCCCccceEEEEEEEEE
Q 002002 652 TVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLL-PGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 652 ~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-~~g~~~~G~l~l~~~f~ 721 (983)
.-+.|++|....+- ..|.++|.++|.|..|++.-.+...|+|++-+ .. .|.|++.+|..
T Consensus 444 ~g~kfeifhkggf~-------rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~v----GGkLevKvRiR 503 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFN-------RSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAV----GGKLEVKVRIR 503 (523)
T ss_pred cCeeEEEeeccccc-------cccceeceeeeeehhhhcccchhhceecccccccc----CCeeEEEEEEe
Confidence 25899999987765 47999999999999998866666778887532 22 38899999886
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.078 Score=58.62 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=89.8
Q ss_pred EEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEe--------cCCCEEEEEEEeC
Q 002002 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVY--------DPCTVLTIGVFDN 661 (983)
Q Consensus 590 L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~--------~~~~~l~i~v~D~ 661 (983)
+.|.|++|+|.+.. -+..-.+.+++++....|..+..+-.|.||..+.|++. ...++|+++||--
T Consensus 2 ivl~i~egr~F~~~-------~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQR-------PRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCC-------CCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence 56889999999643 23456788899999999999999999999999999984 2356999999998
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccc---cCC--CeEEEEEEeeecCCCCCccceEEEEEEEEEe
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTL---DTN--RVYLNSYSLTVLLPGGAKKMGEIEIAVRFTC 722 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~ 722 (983)
|.... .-+.||.+.++|... ..+ ..-.+||+|...+.+-.+.+-+|.+.+....
T Consensus 75 ~~~~~-------~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~ 133 (340)
T PF12416_consen 75 DGSTG-------KRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIED 133 (340)
T ss_pred cCCCC-------cceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEec
Confidence 83331 345899999999998 555 4557899999773322222456777766654
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.051 Score=64.55 Aligned_cols=112 Identities=23% Similarity=0.259 Sum_probs=80.3
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-------eEEeeeCcC-CCCCCeeee-EEEEE-eeecCCCCCceEEEE
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-------QRRRTKTKF-RDLNPQWDE-RLEFL-VHDAESMPTEILEIN 76 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~-~t~nP~WnE-~f~f~-v~~~~~l~~~~L~v~ 76 (983)
+.+.|+|+++.-|..++. .-||.|.+-| ..+||+++. |++||+|+| .|.|. |.-++ -..|.|.
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe---LA~lRia 775 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE---LASLRIA 775 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc---hhheeee
Confidence 678999999999987753 4799999855 457888876 579999996 56665 22332 4679999
Q ss_pred EEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 77 LYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 77 V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
||++ ...|||+-.+|++.+. ...+.+-|...++.+-.--.|.+.+...+
T Consensus 776 vyeE-----ggK~ig~RIlpvd~l~----~GYrhv~LRse~Nqpl~lp~Lfv~i~~kd 824 (1189)
T KOG1265|consen 776 VYEE-----GGKFIGQRILPVDGLN----AGYRHVCLRSESNQPLTLPALFVYIVLKD 824 (1189)
T ss_pred eecc-----CCceeeeeccchhccc----CcceeEEecCCCCCccccceeEEEEEeec
Confidence 9953 3469999999999876 45666778777655433345555555443
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.083 Score=62.87 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=83.5
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-------EEEEeeeecC-CCCCeece-EEEEEE-ecC-CCEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-------KWVRTRTILD-RFNPRWNE-QYTWDV-YDP-CTVLT 655 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-------~~~rT~~~~~-t~nP~Wne-~~~~~v-~~~-~~~l~ 655 (983)
.+.+.|+|++|.=|..+ +.-.||.|.+-+ +.+||+++.+ ++||+|+| .|.|.- .-| -..|+
T Consensus 702 A~t~sV~VISgqFLSdr--------kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lR 773 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDR--------KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLR 773 (1189)
T ss_pred EeeEEEEEEeeeecccc--------ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhhee
Confidence 46899999999999543 233799998633 5679998875 55999997 577753 333 34899
Q ss_pred EEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEE--EEEEE-EEecChHHHHHHh
Q 002002 656 IGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEI--EIAVR-FTCSSWLNLIQAY 732 (983)
Q Consensus 656 i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l--~l~~~-f~~~~~~~~~~~~ 732 (983)
|.||++.. .+||.-.+|+..|.+|.. ..-|......... .-.| .+.+. |.+..+.+++.+-
T Consensus 774 iavyeEgg------------K~ig~RIlpvd~l~~GYr---hv~LRse~Nqpl~-lp~Lfv~i~~kdyvpd~~~d~~~AL 837 (1189)
T KOG1265|consen 774 IAVYEEGG------------KFIGQRILPVDGLNAGYR---HVCLRSESNQPLT-LPALFVYIVLKDYVPDDLSDLVEAL 837 (1189)
T ss_pred eeeeccCC------------ceeeeeccchhcccCcce---eEEecCCCCCccc-cceeEEEEEeeccCCchhhhHHHHH
Confidence 99999642 599999999999999862 2335543211111 1222 22222 4445666777666
Q ss_pred cCCC
Q 002002 733 ATPM 736 (983)
Q Consensus 733 ~~p~ 736 (983)
.+|.
T Consensus 838 ~nPi 841 (1189)
T KOG1265|consen 838 ANPI 841 (1189)
T ss_pred hChH
Confidence 6664
|
|
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.074 Score=55.91 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=93.7
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCC
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGR 663 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~ 663 (983)
...|.|.++++.++||.-... .. +-+.+-||+++.+. ...||.+......=.|.|.|..++.. .+++.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~-~k-glt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQ-QK-GLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChh-cc-CceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCc
Confidence 457999999999999953321 11 33568999999874 45566665555555899999998864 4588899999886
Q ss_pred CCCcCCCCCCCCce--eEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEecChHHHHHHhcCCCCCccc
Q 002002 664 YKRDEAGKPGKDVR--VGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCSSWLNLIQAYATPMLPRMH 741 (983)
Q Consensus 664 ~~~~~~~~~~~d~~--lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~~~~~~~~~~~~p~~p~~h 741 (983)
-. ++.+ .| .+.+..+.... -.+-+.|.. .++|.+.+.+.|+ +..+.|-+..+|++.
T Consensus 125 q~--------RHKLC~~g--~l~~~~v~rqs-pd~~~Al~l------ePrgq~~~r~~~~-----Dp~av~rR~~~Prlr 182 (442)
T KOG1452|consen 125 QR--------RHKLCHLG--LLEAFVVDRQS-PDRVVALYL------EPRGQPPLRLPLA-----DPEAVTRRTVNPRLR 182 (442)
T ss_pred hh--------hccccccc--hhhhhhhhhcC-Ccceeeeec------ccCCCCceecccC-----ChHHHhhcccCcccc
Confidence 44 3332 34 22222221111 122233332 3468999998886 677777766666532
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHHhhcCCC
Q 002002 742 YVRPLGPAQQDILRHTAMRIVTARLARSEP 771 (983)
Q Consensus 742 y~~p~~~~q~~~l~~~a~~~v~~~l~~~~p 771 (983)
.+.+.....+..|..++.|
T Consensus 183 -----------gvfG~~L~~lV~RE~~~~P 201 (442)
T KOG1452|consen 183 -----------GVFGISLSRLVQREPESPP 201 (442)
T ss_pred -----------cccchhhHhHhhcCCCCCc
Confidence 1234445566667666666
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.46 Score=46.81 Aligned_cols=106 Identities=18% Similarity=0.268 Sum_probs=73.0
Q ss_pred CEEEEEEEEeecCCCCCCCCcEEEEEE--cCee----eeeeec-CC-CccceEEEEeec--CC-CCCeEEEEEEcCCcCC
Q 002002 273 PFLYVRVLKAKRAGNVSNGSLYAKLVI--GTHS----IKTKSQ-AD-KDWDQVFAFDKE--GL-NSTSLEVSVWSEEKKE 341 (983)
Q Consensus 273 ~~L~V~v~~a~~L~~~~~~dPyv~v~~--~~~~----~kTk~~-~~-P~Wne~f~f~~~--~~-~~~~l~v~V~d~d~~~ 341 (983)
.-++|+|+.+.++.....+|-||++.+ |++. ..|+.+ .. +.|||.+.|++. ++ .+..|.|+||+.....
T Consensus 8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~ 87 (158)
T cd08398 8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRK 87 (158)
T ss_pred CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCCCCCccceeEEcccchhcCChhheEEEEEEEEeccc
Confidence 358899999999887677788988854 6653 245544 45 999999999863 43 3778999999975210
Q ss_pred ccccCCceeEEEEEeccccCCCCCCCCCCCCceEEcccCCCCCceEEEEEEeccC
Q 002002 342 NEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQ 396 (983)
Q Consensus 342 ~d~~~d~~lG~~~i~l~~l~~~~~~~~~l~~~w~~L~~~~~~~g~i~l~~~~g~~ 396 (983)
........+|.+.+.|-+-. + .| .+|...+.+|.+..
T Consensus 88 ~~k~~~~~iG~~ni~LFd~~-~-----~L------------r~G~~~L~lW~~~~ 124 (158)
T cd08398 88 GAKEEHCPLAWGNINLFDYT-D-----TL------------VSGKMALNLWPVPH 124 (158)
T ss_pred CCCCceEEEEEEEEEEECCC-C-----hh------------hCCCEEEEEEcCCc
Confidence 00012356999999987621 1 11 46999999997543
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.22 Score=48.96 Aligned_cols=90 Identities=19% Similarity=0.200 Sum_probs=61.2
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CCeE----EeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQR----RRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
...++|+|++++++.-.+ .++-||++.+ +++. ..|+.+.. .++.|||...|.+.-.+--....|.|.||+
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEE
Confidence 457899999999988653 4688888876 4432 23444443 679999999998765322236789999997
Q ss_pred CCCCC---CCCCccEEEEEECcc
Q 002002 80 DKKTG---KRSTFLGKVKIAGST 99 (983)
Q Consensus 80 ~~~~~---~~d~~lG~~~i~l~~ 99 (983)
..... .....+|.+.++|-+
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EecccCCCCceEEEEEEEEEEEC
Confidence 54321 012468888888665
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.33 Score=48.67 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=51.6
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CCe----EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQ----RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
...++|+|+.+.+|..+ ....+-||.+.+ |++ ...|+.+.-..++.|||.+.|.+.-.+--....|.|.||+
T Consensus 7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 45789999999999862 234677887765 443 3355555545679999999998754322236689999997
Q ss_pred CC
Q 002002 80 DK 81 (983)
Q Consensus 80 ~~ 81 (983)
..
T Consensus 85 ~~ 86 (173)
T cd08693 85 VS 86 (173)
T ss_pred ec
Confidence 54
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.3 Score=38.60 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=57.5
Q ss_pred CCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECccceecCC
Q 002002 27 TASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGS 105 (983)
Q Consensus 27 ~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~ 105 (983)
.++-.+++.+++ ...+|.-+. -.+..|++.|.+.+.- +..|+|.||-.| . ..+.|-..+-|.+..
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-----sRELEI~VywrD-~---RslCav~~lrLEd~~---- 73 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-----SRELEIAVYWRD-W---RSLCAVKFLKLEDER---- 73 (98)
T ss_pred ccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-----ccEEEEEEEEec-c---hhhhhheeeEhhhhc----
Confidence 478899999988 667776654 3688999999999954 689999998533 2 235666666666632
Q ss_pred eeeEEEEceecCCcceeeeEEEEEEEE
Q 002002 106 ESSVYYPLEKRSVFSQIKGEIGLKVYY 132 (983)
Q Consensus 106 ~~~~w~~L~~~~~~s~~~G~l~l~i~~ 132 (983)
...-.+|++ +|.+...++|
T Consensus 74 -~~~~~~lep-------qg~l~~ev~f 92 (98)
T cd08687 74 -HEVQLDMEP-------QLCLVAELTF 92 (98)
T ss_pred -ccceecccc-------ccEEEEEEEe
Confidence 122334443 4888777766
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.2 Score=52.75 Aligned_cols=115 Identities=20% Similarity=0.263 Sum_probs=73.3
Q ss_pred CCcEEEEEEEEeeCCCCCCC--CCCCCeEEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDG--QGTASAYVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
.++.|.+++..+++|.-... +-+.+-||++.++. ++.||.+.....-=.|.|+|...+.+. ..+.+-||.++
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-----~vl~~lvySW~ 123 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-----EVLHYLVYSWP 123 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-----eeeeEEEeecC
Confidence 45789999999999985432 44678999999988 566777766666667999999988763 57777777654
Q ss_pred CCCCCCCc--cEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 82 KTGKRSTF--LGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 82 ~~~~~d~~--lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
.-. +.++ +| -+.+..+.+.+.....-+.|++ +|.+-+++-+.+
T Consensus 124 pq~-RHKLC~~g--~l~~~~v~rqspd~~~Al~leP-------rgq~~~r~~~~D 168 (442)
T KOG1452|consen 124 PQR-RHKLCHLG--LLEAFVVDRQSPDRVVALYLEP-------RGQPPLRLPLAD 168 (442)
T ss_pred chh-hccccccc--hhhhhhhhhcCCcceeeeeccc-------CCCCceecccCC
Confidence 432 3333 44 2333333222222222233443 488888876553
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.67 Score=45.75 Aligned_cols=94 Identities=22% Similarity=0.298 Sum_probs=61.5
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CCe----EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQ----RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
...++|+|....++...+ ....+-||.+.+ +++ ...|.......++.|||...|.+.-.+--....|.|.||+
T Consensus 7 ~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 7 NFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 346788888888877621 234667777765 443 2234333334689999999998755322236689999997
Q ss_pred CCCCC-CCCCccEEEEEECccc
Q 002002 80 DKKTG-KRSTFLGKVKIAGSTF 100 (983)
Q Consensus 80 ~~~~~-~~d~~lG~~~i~l~~l 100 (983)
.+... ..+..||.+.+++=+.
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EecCCCCcceEEEEEeEEeEcc
Confidence 55432 1457899999987663
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=92.06 E-value=5.2 Score=38.62 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=74.6
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEE---EEeeee-cCCCCCeeceEEEEEEe---cC------CCEEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW---VRTRTI-LDRFNPRWNEQYTWDVY---DP------CTVLT 655 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~---~rT~~~-~~t~nP~Wne~~~~~v~---~~------~~~l~ 655 (983)
.+.+.|++..+++. ....-|+..+.++.. ..|... ..+..-.||+.|.+++. +. ...++
T Consensus 8 ~~~l~i~~l~~~p~--------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 8 QFDLTIHELENLPS--------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred EEEEEEEEeECcCC--------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 56788888888853 123456666666542 444433 34567899999998873 11 12688
Q ss_pred EEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCC--CeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 656 IGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN--RVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 656 i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
|.|+.....+ +...||++.|+|++..+. ......++|... .+....|++.+.+.
T Consensus 80 ~~v~~~~~~~--------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~ 135 (143)
T PF10358_consen 80 FSVFEVDGSG--------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLS 135 (143)
T ss_pred EEEEEecCCC--------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence 9999875433 225899999999998763 455667777643 12346788887775
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=92.00 E-value=3.6 Score=39.77 Aligned_cols=122 Identities=16% Similarity=0.260 Sum_probs=79.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeE---EeeeCcC-CCCCCeeeeEEEEEeeec-----CCCCCceEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQR---RRTKTKF-RDLNPQWDERLEFLVHDA-----ESMPTEILEI 75 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~---~~T~~~~-~t~nP~WnE~f~f~v~~~-----~~l~~~~L~v 75 (983)
....+.|.|.+..+++. ....-||...-++.. ..|.... .+-.-.|||.|.+.+.-. ..+....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 45678899999998876 233455555555532 3444333 344568999998876431 1256778999
Q ss_pred EEEeCCCCCCCCCccEEEEEECccceecC-CeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 76 NLYNDKKTGKRSTFLGKVKIAGSTFAKVG-SESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 76 ~V~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
.|+.....+ +...+|.+.++|+++.... .....-++|.+.. .....|.+.+.+..
T Consensus 81 ~v~~~~~~~-~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~---~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 81 SVFEVDGSG-KKKVLGKVSINLAEYANEDEEPITVRLLLKKCK---KSNATLSISISLSE 136 (143)
T ss_pred EEEEecCCC-ccceEEEEEEEHHHhhCcCCCcEEEEEeCccCC---CCCcEEEEEEEEEE
Confidence 998654332 2369999999999998542 4555667887662 23466777776653
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.04 Score=65.49 Aligned_cols=197 Identities=19% Similarity=0.248 Sum_probs=119.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEE---C--CEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEe
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY---G--PKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFD 660 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~---~--~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D 660 (983)
..|.+.+.+++|.+|. ....-||...+ | ....+|+++.+|..|.||+++++++.. .+..+|.+++
T Consensus 757 ~ygflh~~vhsat~lk---------qs~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~e 826 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLK---------QSRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKTE 826 (1112)
T ss_pred cccceeeeeccccccc---------cccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-ccccchhhhc
Confidence 4789999999999993 33567887764 3 367799999999999999999999854 4456688887
Q ss_pred CCCCCCcCC--CCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEecChHHHHHHhcCCCC-
Q 002002 661 NGRYKRDEA--GKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCSSWLNLIQAYATPML- 737 (983)
Q Consensus 661 ~d~~~~~~~--~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~~~~~~~~~~~~p~~- 737 (983)
.+.-..... -.-..+...|+.++.+.--.... ..||.-. -...| -.++..+.|+..+.-.. ..|..
T Consensus 827 k~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~d--~d~~t~v-~~~n~----~~ve~~v~~ssss~Ss~----~~~~~~ 895 (1112)
T KOG4269|consen 827 KSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPHHD--ADWYTQV-IDMNG----IVVETSVKFSSSSTSSK----RKPSVK 895 (1112)
T ss_pred ccchHHHhhhccchhhcccccccccccCcccccc--ccCccCh-hhhcC----cceeeeEEecccccccc----CCCcce
Confidence 765321000 00023445666555544322211 2333211 11122 34667777764321100 01100
Q ss_pred CcccccCCCChhhHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhcCCCcceeehhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 002002 738 PRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVVQFMLDTDTHVWSMRRSKANWFRVVGCLTRAATLARWLDG 817 (983)
Q Consensus 738 p~~hy~~p~~~~q~~~l~~~a~~~v~~~l~~~~p~l~~~vv~~~~d~~~~~~s~~~~~~n~~R~~~~~~~~~~~~~~~~~ 817 (983)
-..-|-.|+ ..++.++..|--..-|.+...|++|+.. .++.-...|+||.+....+.++.+.|+.
T Consensus 896 qTgIFG~~~---------~~kisv~t~~n~s~lP~VVyrCvEyle~------~RgieEeGIyRlSGsaT~Ik~Lke~Fd~ 960 (1112)
T KOG4269|consen 896 QTGIFGLPL---------NVKISVVTKRNVSGLPYVVYRCVEYLES------CRGIEEEGIYRLSGSATDIKALKEQFDE 960 (1112)
T ss_pred eceeccccc---------eeeEeeeeeecccCCchHHHHHHHHHHh------ccccchhceEEecccHHHHHHHHHHhcc
Confidence 000111111 1345556666666778888999999972 2345567999999999999999999876
Q ss_pred c
Q 002002 818 I 818 (983)
Q Consensus 818 ~ 818 (983)
-
T Consensus 961 ~ 961 (1112)
T KOG4269|consen 961 N 961 (1112)
T ss_pred c
Confidence 6
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.97 Score=45.36 Aligned_cols=93 Identities=17% Similarity=0.294 Sum_probs=60.1
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEE--ECCEEE----EeeeecCCCCCeeceEEEEEEe--c--CCCEEEEEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAK--YGPKWV----RTRTILDRFNPRWNEQYTWDVY--D--PCTVLTIGV 658 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~--~~~~~~----rT~~~~~t~nP~Wne~~~~~v~--~--~~~~l~i~v 658 (983)
.++|+|+.+.+|... ....+-|+.+. .|++.+ .|+.+.-+.++.|||.++|++. + ....|.|+|
T Consensus 9 ~f~i~i~~~~~~~~~------~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti 82 (173)
T cd08693 9 KFSITLHKISNLNAA------ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAI 82 (173)
T ss_pred CEEEEEEEeccCccC------CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEE
Confidence 588999999999541 23466777764 466543 5554444567999999999774 2 245899999
Q ss_pred EeCCCCCCcC--------CCCCCCCceeEEEEEEccc
Q 002002 659 FDNGRYKRDE--------AGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 659 ~D~d~~~~~~--------~~~~~~d~~lG~~~i~l~~ 687 (983)
|+........ ......+..||.+.++|=+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 9976432100 0001235689999888755
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.73 Score=45.51 Aligned_cols=92 Identities=21% Similarity=0.296 Sum_probs=62.5
Q ss_pred CCCCeEEEEEE--CCe----EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCCCccEEEEEECcc
Q 002002 26 GTASAYVIVDF--DGQ----RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGST 99 (983)
Q Consensus 26 g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d~~lG~~~i~l~~ 99 (983)
..++-||++.+ +++ ..+|+.+.-+..+.|||...|.+.-.+--....|.|.||+....+ ....+|.+.+++=+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~-~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG-KAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC-CceEEEEEEEeeEC
Confidence 45788888876 443 235555555677899999999986643334678999999865543 56789999988765
Q ss_pred ceecCCeeeEEEEceecCCcceeeeEEEEEEEEecC
Q 002002 100 FAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 100 l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~ 135 (983)
.. + .| -+|...+.++....
T Consensus 107 ~~--g-------~L--------r~G~~~l~lw~~~~ 125 (159)
T cd08397 107 KD--G-------TL--------RRGRQKLRVWPDVE 125 (159)
T ss_pred CC--C-------cE--------ecCCEEEEEEeCCC
Confidence 32 0 01 24888888865433
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=91.15 E-value=1.7 Score=37.89 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=57.5
Q ss_pred CCCCCcEEEEEECCEE-EEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccc
Q 002002 610 RGTTDAYVVAKYGPKW-VRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL 688 (983)
Q Consensus 610 ~g~sDpy~~~~~~~~~-~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l 688 (983)
.|.++-.|+++++|+. .+|.- +...+..|++.|++++ |.+..|+|+||=.|--+ +=|-.-++|.+.
T Consensus 6 ~~~~eV~avLklDn~~VgqT~W-k~~s~q~WDQ~Fti~L-dRsRELEI~VywrD~Rs-----------lCav~~lrLEd~ 72 (98)
T cd08687 6 MGCSEVSAVLKLDNTVVGQTQW-KPKSNQAWDQSFTLEL-ERSRELEIAVYWRDWRS-----------LCAVKFLKLEDE 72 (98)
T ss_pred ecccceEEEEEEcCeEEeeccc-cccccccccceeEEEe-ecccEEEEEEEEecchh-----------hhhheeeEhhhh
Confidence 3557889999999854 45543 3335789999999998 55779999998766422 445556667763
Q ss_pred cCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 689 DTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 689 ~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
..+ ...+| .+.|.|..+++|
T Consensus 73 ~~~----~~~~l--------epqg~l~~ev~f 92 (98)
T cd08687 73 RHE----VQLDM--------EPQLCLVAELTF 92 (98)
T ss_pred ccc----ceecc--------ccccEEEEEEEe
Confidence 221 12222 345888888877
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.58 Score=55.20 Aligned_cols=83 Identities=25% Similarity=0.359 Sum_probs=62.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccccChhhHHHHHHHHHHHHHHHhhhhhhhhhhheeeecccCCC
Q 002002 880 PSEVVRIRYDRLRALAGRAQTLLGDVAAQGERLEALFNWRDPRATWIFVVLCLVASLVFYAVPFKLFVLGSGFYYLRHPR 959 (983)
Q Consensus 880 ~~~~~~~r~~~l~~~~~~vQ~~~~~~a~~~Er~~~l~~w~~p~~t~~~~~~~~~~~~~l~~vp~r~~~~~~g~~~~r~p~ 959 (983)
+++.||..++|+.... +=-++.+.-.|.-|-+|++|+-|+.||++-++|.++=+++|.-+.+|+ +.+.+|.
T Consensus 89 spdkLRa~lERlY~tv------~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~---~li~~P~ 159 (642)
T PF11696_consen 89 SPDKLRANLERLYMTV------VVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLI---ALILSPP 159 (642)
T ss_pred ChHHHHHHhHhheeeh------HHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCcc
Confidence 3567888888887622 223556667777899999999999999999999999999998777776 4556777
Q ss_pred CCCC-CCCchhhh
Q 002002 960 FRGD-MPSVPVNF 971 (983)
Q Consensus 960 ~~~~-~p~~~~~f 971 (983)
.|.- .|+.+...
T Consensus 160 ~r~~lFPpap~al 172 (642)
T PF11696_consen 160 ARSILFPPAPPAL 172 (642)
T ss_pred cccccCCCCCccc
Confidence 7764 56555443
|
|
| >cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.29 Score=52.18 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=34.5
Q ss_pred HHHHHhcCCCCC-cccccCCCChhhHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhcCCCcce
Q 002002 727 NLIQAYATPMLP-RMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVVQFMLDTDTHV 788 (983)
Q Consensus 727 ~~~~~~~~p~~p-~~hy~~p~~~~q~~~l~~~a~~~v~~~l~~~~p~l~~~vv~~~~d~~~~~ 788 (983)
|+.++|+.|..| ++||.+|-.+|+| ++|+ +.|++.++.||.++
T Consensus 39 DfT~SNg~p~~~~SLHy~~~~~~N~Y----q~aI---------------~~vg~il~~yD~D~ 82 (254)
T cd01459 39 DFTKSNGWPGEKRSLHYISPGRLNPY----QKAI---------------RIVGEVLQPYDSDK 82 (254)
T ss_pred EeCCCCCCCCCCCCcccCCCCCccHH----HHHH---------------HHHHHHHHhcCCCC
Confidence 555899999999 9999999989999 6677 45677777777554
|
They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding. |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.95 Score=45.41 Aligned_cols=94 Identities=21% Similarity=0.214 Sum_probs=62.4
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CCeE----EeeeCcC--C--CCCCeeeeEEEEEeeecCCCCCceEEE
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQR----RRTKTKF--R--DLNPQWDERLEFLVHDAESMPTEILEI 75 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~--~--t~nP~WnE~f~f~v~~~~~l~~~~L~v 75 (983)
...+.|+|.++++++........|-||.+.+ +++. ..|+... + ...+.|||...|.+.-.+--....|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 4568899999999998776556788888876 4432 2343221 1 235779999999885432223568999
Q ss_pred EEEeCCCCCC--------CCCccEEEEEECcc
Q 002002 76 NLYNDKKTGK--------RSTFLGKVKIAGST 99 (983)
Q Consensus 76 ~V~~~~~~~~--------~d~~lG~~~i~l~~ 99 (983)
.+|+...... .+..||.+.++|=+
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 9997543320 24578888877655
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=90.34 E-value=3.1 Score=40.53 Aligned_cols=125 Identities=11% Similarity=0.174 Sum_probs=78.1
Q ss_pred EEEEEEEceecccccccc-CCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEec--------------CCC
Q 002002 588 GLLEVGIRGATNLLPVKT-KDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYD--------------PCT 652 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~-~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~--------------~~~ 652 (983)
-.|+|+|++++-....-. .++ ...+--++-+.+++++++|+.+.-+.+|.++|.|-|++.. .++
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~-~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEG-QVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCC-CCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 356677776665431100 001 2233334455678999999999999999999999999853 245
Q ss_pred EEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccC-CC-eEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 653 VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT-NR-VYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 653 ~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~-~~-~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
.|++.|.-.|..+ .-.++|.-.+.=..+.. +. .......|........-..|.|++.+...
T Consensus 88 pihivli~~d~~~--------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELl 150 (156)
T PF15627_consen 88 PIHIVLIRTDPSG--------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELL 150 (156)
T ss_pred ceEEEEEEecCCC--------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEee
Confidence 7888888877765 33688887776655432 22 11233445554333222468888887653
|
|
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.47 E-value=3.5 Score=41.35 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=48.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CCe---EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQ---RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~---~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
...++|+|.++.++... ......-||++.+ +++ ..+|+.+.-+.++.|||.+.|.+.-.+--....|.|.||+.
T Consensus 9 ~~~friki~~~~~~~~~-~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 9 DRKFRVKILGIDIPVLP-RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCCEEEEEEeecccCcC-CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 34678888888744332 2223345666654 443 23566666677899999999988654323467899999975
Q ss_pred C
Q 002002 81 K 81 (983)
Q Consensus 81 ~ 81 (983)
.
T Consensus 88 ~ 88 (178)
T cd08399 88 K 88 (178)
T ss_pred e
Confidence 3
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.27 E-value=1.4 Score=43.42 Aligned_cols=70 Identities=24% Similarity=0.264 Sum_probs=49.7
Q ss_pred CCCCCcEEEEEE--CCEE----EEeeeecCCCCCeeceEEEEEEe--c--CCCEEEEEEEeCCCCCCcCCCCCCCCceeE
Q 002002 610 RGTTDAYVVAKY--GPKW----VRTRTILDRFNPRWNEQYTWDVY--D--PCTVLTIGVFDNGRYKRDEAGKPGKDVRVG 679 (983)
Q Consensus 610 ~g~sDpy~~~~~--~~~~----~rT~~~~~t~nP~Wne~~~~~v~--~--~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG 679 (983)
...+|-||.+.+ |++. ++|+.+.-+..+.|||-.+|++. + ....|.|+|||.+..+ +...||
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~--------~~~~vg 98 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG--------KAVPFG 98 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC--------CceEEE
Confidence 345677887754 5543 35555555567899999999874 2 2458999999987544 466899
Q ss_pred EEEEEccc
Q 002002 680 KIRVRLST 687 (983)
Q Consensus 680 ~~~i~l~~ 687 (983)
.+.++|=+
T Consensus 99 ~~~~~lFd 106 (159)
T cd08397 99 GTTLSLFN 106 (159)
T ss_pred EEEEeeEC
Confidence 99998765
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=87.78 E-value=8.1 Score=39.08 Aligned_cols=57 Identities=12% Similarity=0.269 Sum_probs=40.2
Q ss_pred EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCC-CCccEEEEEEC
Q 002002 40 RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKR-STFLGKVKIAG 97 (983)
Q Consensus 40 ~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~-d~~lG~~~i~l 97 (983)
.++|.+...+.+|.|+|++.+.+.. +......|.|..++....... ...+|-+.+||
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~-~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPI-DKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecCh-hhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 5788899999999999999999865 345577898988763211111 14566666665
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PTZ00447 apical membrane antigen 1-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.15 E-value=3.4 Score=44.49 Aligned_cols=108 Identities=13% Similarity=0.220 Sum_probs=82.2
Q ss_pred CEEEEEEEEeecCCCCCCCCcEEEEEEcCeeeeeeec--CC---CccceEEEEeecCCCCCeEEEEEEcCCcCCccccCC
Q 002002 273 PFLYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQ--AD---KDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTE 347 (983)
Q Consensus 273 ~~L~V~v~~a~~L~~~~~~dPyv~v~~~~~~~kTk~~--~~---P~Wne~f~f~~~~~~~~~l~v~V~d~d~~~~d~~~d 347 (983)
-+|-|.|.+-.++. -...-|+++..|....+|..+ +. -.-.|.....+... ...|.|.|+-.. +.+.
T Consensus 58 F~LLVeI~EI~~i~--k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQc-DnTLkI~lfKKk-----Lvkk 129 (508)
T PTZ00447 58 FYLLVKINEIFNIN--KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQC-DETLRVDLFTTK-----LTKK 129 (508)
T ss_pred eeEEEEehhhhccc--cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeec-CceEEEEEEecc-----ccce
Confidence 35888888877743 445779999999999999766 22 44555666666555 788999999864 7799
Q ss_pred ceeEEEEEecc-ccCCCCCCCCCCCCceEEcccCCCCCceEEEEEE
Q 002002 348 NCLGTVLFDLQ-EVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVW 392 (983)
Q Consensus 348 ~~lG~~~i~l~-~l~~~~~~~~~l~~~w~~L~~~~~~~g~i~l~~~ 392 (983)
..||.+.+++. ++..+.-| ..+||.+...|+..+.|.|+.+
T Consensus 130 ~hIgdI~InIn~dIIdk~FP----KnkWy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 130 VHIGQIKIDINASVISKSFP----KNEWFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred eEEEEEEecccHHHHhccCC----ccceEEEecCCceeeeEEEEeh
Confidence 99999999996 55544443 3699999888888899999884
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=86.99 E-value=3.1 Score=41.02 Aligned_cols=88 Identities=24% Similarity=0.330 Sum_probs=57.0
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEE--ECCEEE----EeeeecCCCCCeeceEEEEEEe--c--CCCEEEEEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAK--YGPKWV----RTRTILDRFNPRWNEQYTWDVY--D--PCTVLTIGV 658 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~--~~~~~~----rT~~~~~t~nP~Wne~~~~~v~--~--~~~~l~i~v 658 (983)
.++|+|....++...+ ....+-|+.+. .|++.. .|.....+.++.|||.++|++. + ....|.|++
T Consensus 9 ~~~i~i~~~~~~~~~~-----~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl 83 (156)
T cd08380 9 NLRIKIHGITNINLLD-----SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSI 83 (156)
T ss_pred CeEEEEEeeccccccC-----CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEE
Confidence 4667777777775411 23456677664 355422 3433333368999999999864 2 245899999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEccc
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~ 687 (983)
|+.+..+. .++..||.+.++|=+
T Consensus 84 ~~~~~~~~------~~~~~iG~~~~~lFd 106 (156)
T cd08380 84 YAVSEPGS------KKEVPLGWVNVPLFD 106 (156)
T ss_pred EEEecCCC------CcceEEEEEeEEeEc
Confidence 99775430 135789999998865
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=85.24 E-value=4.9 Score=36.28 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=49.9
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CCe----EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQ----RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
..+.+.+...++.........++-||++.+ +++ ...|+.+.-...+.|||...|.+.-.+--....|.|.+|+.
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 11 RNLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred CceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 346677888887766544333588888876 443 23455554456689999999987553322366899999964
Q ss_pred C
Q 002002 81 K 81 (983)
Q Consensus 81 ~ 81 (983)
.
T Consensus 91 ~ 91 (100)
T smart00142 91 K 91 (100)
T ss_pred e
Confidence 3
|
Outlier of C2 family. |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=83.17 E-value=10 Score=36.67 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=47.3
Q ss_pred eeeCcCCC-CCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC----CccEEEEEECccceecCCeeeEEEEceec
Q 002002 42 RTKTKFRD-LNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS----TFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 42 ~T~~~~~t-~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d----~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.|+...-+ .++.|||.+.|.+.-.+--....|.|.||..+... .. ..||.+.+++-+...
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-~~~~~~~~lgw~n~~lFd~~~-------------- 87 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-KSKKKKVPLGWVNLPLFDYRG-------------- 87 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-TT--EEEEEEEEEEESB-TTS--------------
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-ccccceeEEEEEEEEeECCCC--------------
Confidence 56655555 79999999999975532223678999999755443 33 589999988776431
Q ss_pred CCcceeeeEEEEEEEEec
Q 002002 117 SVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 117 ~~~s~~~G~l~l~i~~~~ 134 (983)
.-.+|...+.+ |..
T Consensus 88 ---~L~~G~~~L~l-W~~ 101 (142)
T PF00792_consen 88 ---QLRQGPQKLSL-WPD 101 (142)
T ss_dssp ---BBEEEEEEEE--EET
T ss_pred ---cccCCCEEEEE-EcC
Confidence 01258888888 443
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=82.85 E-value=10 Score=38.14 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=54.7
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEE--ECCEE---EEeeeecCCCCCeeceEEEEEEe--c--CCCEEEEEEE
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAK--YGPKW---VRTRTILDRFNPRWNEQYTWDVY--D--PCTVLTIGVF 659 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~--~~~~~---~rT~~~~~t~nP~Wne~~~~~v~--~--~~~~l~i~v~ 659 (983)
.++|+|+++..+... . .....-||.+. .|+.. .+|....-+.++.|||-++|++. + ....|.|+||
T Consensus 11 ~friki~~~~~~~~~----~-~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~ 85 (178)
T cd08399 11 KFRVKILGIDIPVLP----R-NTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIY 85 (178)
T ss_pred CEEEEEEeecccCcC----C-CCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEE
Confidence 467777777644221 1 11223444443 24432 36666555668999999888874 2 2458999999
Q ss_pred eCCCCCC--cC------CCCCCCCceeEEEEEEccc
Q 002002 660 DNGRYKR--DE------AGKPGKDVRVGKIRVRLST 687 (983)
Q Consensus 660 D~d~~~~--~~------~~~~~~d~~lG~~~i~l~~ 687 (983)
+...... .. ...+..+..||.+.+.|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 86 CGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred EEecCcccccccccccccccccccceEEEEEEEEEc
Confidence 9743211 00 0112346788999988855
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=82.71 E-value=5.2 Score=40.10 Aligned_cols=89 Identities=22% Similarity=0.299 Sum_probs=58.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEE--CCeEE----EeeeeeeccCCCCCCCCcccceEEEEec---CCCCCc
Q 002002 429 LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQL--GAQLF----KTGRTSVGLSPSSSANPTWNEDLVFVAA---EPFEPF 499 (983)
Q Consensus 429 L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~l--g~~~~----rT~~~~~~~~~~~t~nP~wne~f~f~~~---~~~~~~ 499 (983)
++|+|..+.+++.. ......|-||.+.+ |++.. .|+.... ...-...+.|||-+.|.+. -|.+..
T Consensus 10 ~~i~v~~~h~~~~~----~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~--~~~f~~~~~Wnewl~F~i~i~~LPrear 83 (171)
T cd04012 10 LSVTVSSLHRIPPT----WVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKI--TKSFFPRVVWDEWIEFPIPVCQLPRESR 83 (171)
T ss_pred EEEEEEEeecCChH----HhhccccEEEEEEEEECCEECcCceecccccc--ccCccccccccceEECccchhcCChhHE
Confidence 88999999999875 44445788887755 76654 3322110 0011235779999988663 345778
Q ss_pred EEEEEEeCc--C----------CceeEEEEEecccc
Q 002002 500 LVVTVEDVT--N----------GCSVGHARIQMSTV 523 (983)
Q Consensus 500 L~i~V~D~d--~----------d~~lG~~~i~L~~l 523 (983)
|.|++|+.. . +..||.+.++|=+.
T Consensus 84 L~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 84 LVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999999865 2 25788888777663
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=82.33 E-value=2.8 Score=40.93 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccCCchhhHHHHHHHHHH
Q 002002 793 RSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTILVHVLLVAV 837 (983)
Q Consensus 793 ~~~~n~~R~~~~~~~~~~~~~~~~~~~~W~~~~~s~~~~~~~~~~ 837 (983)
+++.=..|++.++..+...++-++.+++|+.|.+|.++.++.+++
T Consensus 63 rlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~ 107 (156)
T PF08372_consen 63 RLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVA 107 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH
Confidence 556667788889999999999999999999999998887765543
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=81.48 E-value=15 Score=35.47 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=38.9
Q ss_pred EeeeecCC-CCCeeceEEEEEEe--c--CCCEEEEEEEeCCCCCCcCCCCCCCC----ceeEEEEEEcccc
Q 002002 627 RTRTILDR-FNPRWNEQYTWDVY--D--PCTVLTIGVFDNGRYKRDEAGKPGKD----VRVGKIRVRLSTL 688 (983)
Q Consensus 627 rT~~~~~t-~nP~Wne~~~~~v~--~--~~~~l~i~v~D~d~~~~~~~~~~~~d----~~lG~~~i~l~~l 688 (983)
.|....-+ .++.|||.++|++. + ..+.|.|+||..+... .+ ..||.+.++|=+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~--------~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK--------KSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST--------TT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC--------ccccceeEEEEEEEEeECC
Confidence 56655555 79999999999874 2 3458999999987654 23 6899999988663
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 983 | ||||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 1e-07 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 9e-06 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 5e-04 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 6e-05 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 6e-05 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 8e-05 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 2e-04 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 4e-04 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 6e-04 |
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-34
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
K+ + V A+ L KD G++ YV V ++RTKT + +LNP W+E F H+
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHN--- 74
Query: 68 MPTEILEINLY----------NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
++ +++ + + + FLG+ I T + E V+Y L+KR+
Sbjct: 75 -SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRT---LSGEMDVWYNLDKRT 130
Query: 118 VFSQIKGEIGLKVYY 132
S + G I L +
Sbjct: 131 DKSAVSGAIRLHISV 145
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 4e-18
Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 10/147 (6%)
Query: 575 VRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDR 634
V+ + + + + A L KD T G++D YV + G RT+TI
Sbjct: 4 VKQSVLDGTSKWSAKISITVVCAQGLQA---KDKT-GSSDPYVTVQVGKTKKRTKTIYGN 59
Query: 635 FNPRWNEQYTWDVYDPCTVLTIGVFD---NGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN 691
NP W E + ++ ++ + + V D + + + + K D +G+ + + TL
Sbjct: 60 LNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE 119
Query: 692 RVYLNSYSLTVLLPGGAKKMGEIEIAV 718
Y+L A G I + +
Sbjct: 120 --MDVWYNLDKRTDKSAVS-GAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-08
Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 26/134 (19%)
Query: 275 LYVRVLKAKR-AGNVSNGSL--YAKLVIGTHSIKTKSQADKD----WDQVFAFDKEGLNS 327
+ + V+ A+ GS Y + +G +TK+ + W++ F F+ +S
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKT-IYGNLNPVWEENFHFECHN-SS 76
Query: 328 TSLEVSVWSEEKKENEECTENC-------LGTVLFDLQEVPKRVPPDSPLAPQWYSLESE 380
++V V E+ + LG + +++ + + WY+L+
Sbjct: 77 DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMD-------VWYNLDKR 129
Query: 381 KLPGND---VMLAV 391
+ L +
Sbjct: 130 TDKSAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 8e-08
Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 39/163 (23%)
Query: 416 TRAKVYLSPKLW--YLRLTVIQTQDLQP--GSG-SEPKVRSPELYVKGQLGAQLFKTGRT 470
+ V W + +TV+ Q LQ +G S+P YV Q+G +T +T
Sbjct: 4 VKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDP-------YVTVQVGKTKKRT-KT 55
Query: 471 SVGLSPSSSANPTWNEDLVFVAAEPFEPFLV-VTVEDVTNGCSV------------GHAR 517
+ NP W E+ F + V V ED V G
Sbjct: 56 I-----YGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTI 110
Query: 518 IQMSTVERRIDDRAEPKSRWFNLVG-DETRPYAGRIHLRACLE 559
I++ T+ +D W+NL + +G I L +E
Sbjct: 111 IEVRTLSGEMD-------VWYNLDKRTDKSAVSGAIRLHISVE 146
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 9e-25
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
L V+V A +L+ D G + + +++ R +T T +++LNP+W++ F + D
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKD--- 70
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIG 127
++LE+ ++ D+ K FLGKV I + + Y L+ + + KG I
Sbjct: 71 -IHDVLEVTVF-DEDGDKPPDFLGKVAIPLLS---IRDGQPNCYVLKNKDLEQAFKGVIY 125
Query: 128 LKVYYID 134
L++ I
Sbjct: 126 LEMDLIY 132
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 15/135 (11%)
Query: 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTW 645
+G+L+V + A +LL D + G +D + + + G ++T T+ NP WN+ +T+
Sbjct: 11 DVGILQVKVLKAADLLA---ADFS-GKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 66
Query: 646 DVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLP 705
+ D VL + VFD K + +GK+ + L ++ + N Y L
Sbjct: 67 PIKDIHDVLEVTVFDEDGDKPPD--------FLGKVAIPLLSIRDGQP--NCYVLKNKDL 116
Query: 706 GGAKKMGEIEIAVRF 720
A K G I + +
Sbjct: 117 EQAFK-GVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-11
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 23/140 (16%)
Query: 262 SRSAYDLVDRMPFLYVRVLKAKR-AGNVSNGSL--YAKLVIGTHSIKTKSQADKD----W 314
S + V + L V+VLKA +G + L +G ++T + K+ W
Sbjct: 2 SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTV-YKNLNPEW 60
Query: 315 DQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQW 374
++VF F + ++ LEV+V+ E+ + + LG V L + P
Sbjct: 61 NKVFTFPIKDIHDV-LEVTVFDEDGDKPPD----FLGKVAIPLLSIRDG-------QPNC 108
Query: 375 YSLESEKLPGND---VMLAV 391
Y L+++ L + L +
Sbjct: 109 YVLKNKDLEQAFKGVIYLEM 128
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 5e-07
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 30/136 (22%)
Query: 428 YLRLTVIQTQDLQP----GSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPT 483
L++ V++ DL G S+P + +LG +T T + NP
Sbjct: 14 ILQVKVLKAADLLAADFSGK-SDP-------FCLLELGNDRLQT-HTV-----YKNLNPE 59
Query: 484 WNEDLVFVAAEPFEPFLVVTV--EDVTNGC-SVGHARIQMSTVERRIDDRAEPKSRWFNL 540
WN+ F + + L VTV ED +G I + ++ + + L
Sbjct: 60 WNKVFTFPIKDIHDV-LEVTVFDEDGDKPPDFLGKVAIPLLSIRDG-------QPNCYVL 111
Query: 541 VG-DETRPYAGRIHLR 555
D + + G I+L
Sbjct: 112 KNKDLEQAFKGVIYLE 127
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 6e-21
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
L V V +A N+ PK G V V F ++++TK +LNP W+E LEF +
Sbjct: 8 MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQ--IKGE 125
+ L I + D +T ++ +G +A S+ Y L
Sbjct: 67 DFSSSLGIIVK-DFETIGQNKLIGTATVALKDLTG-DQSRSLPYKLISLLNEKGQDTGAT 124
Query: 126 IGLKVYYIDEDPPA 139
I L + Y PP+
Sbjct: 125 IDLVIGYD---PPS 135
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 1e-16
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 18/144 (12%)
Query: 583 AKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQ 642
+ G+L V + A+N+ K G D V + + +T+ + + NP WNE
Sbjct: 2 SSGSSGMLRVIVESASNIPKTKF-----GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEI 56
Query: 643 YTWDVY----DPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSY 698
+D+ D + L I V D +++ +G V L L ++ Y
Sbjct: 57 LEFDLRGIPLDFSSSLGIIVKDFETIGQNK--------LIGTATVALKDLTGDQSRSLPY 108
Query: 699 SLTVLL-PGGAKKMGEIEIAVRFT 721
L LL G I++ + +
Sbjct: 109 KLISLLNEKGQDTGATIDLVIGYD 132
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 18/128 (14%)
Query: 275 LYVRVLKAKRAGNVSNGSL--YAKLVIGTHSIKTKSQADKD----WDQVFAF---DKEGL 325
L V V A G ++ KTK D + W+++ F
Sbjct: 9 LRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKV-DNELNPVWNEILEFDLRGIPLD 67
Query: 326 NSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEK--LP 383
S+SL + V E + +GT L+++ P + SL +EK
Sbjct: 68 FSSSLGIIVKDFETIGQNKL----IGTATVALKDLTGDQSRSLPY--KLISLLNEKGQDT 121
Query: 384 GNDVMLAV 391
G + L +
Sbjct: 122 GATIDLVI 129
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 29/138 (21%)
Query: 429 LRLTVIQTQDL--QPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNE 486
LR+ V ++ +P V + KT + + NP WNE
Sbjct: 9 LRVIVESASNIPKTKFGKPDP-------IVSVIFKDEKKKT-KKV-----DNELNPVWNE 55
Query: 487 DLVF-VAAEPFEP--FLVVTVED---VTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNL 540
L F + P + L + V+D + +G A + + + + +S + L
Sbjct: 56 ILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGD-----QSRSLPYKL 110
Query: 541 V---GDETRPYAGRIHLR 555
+ ++ + I L
Sbjct: 111 ISLLNEKGQDTGATIDLV 128
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 2e-20
Identities = 27/143 (18%), Positives = 49/143 (34%), Gaps = 10/143 (6%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
+L + V +AK K S YV V DGQ ++T+ +P+W + L +V
Sbjct: 37 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT---- 92
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKV--GSESSVYYPLEKRSVFSQIK-- 123
P L ++ +T K LG + K V L+ +
Sbjct: 93 -PVSKLHFRVW-SHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETI 150
Query: 124 GEIGLKVYYIDEDPPAPAPEAAA 146
G++ + + + +
Sbjct: 151 GDLSICLDGLQLESEVVTNGETT 173
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 3e-13
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 17/136 (12%)
Query: 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYT 644
+ L++ + A K YV + +T + +P+W + T
Sbjct: 33 TMKSQLQITVISAKLKEN---KKNW-FGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLT 88
Query: 645 WDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLST-LDTNRVYLNSYSLTVL 703
V P + L V+ + DV +G + + L +N + L +T+
Sbjct: 89 VIV-TPVSKLHFRVWSHQTL--------KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ 139
Query: 704 LPG---GAKKMGEIEI 716
L G + +G++ I
Sbjct: 140 LGGDKEPTETIGDLSI 155
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 429 LRLTVIQTQDLQP---GSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWN 485
L++TVI + + G P YV+ + Q KT +++ +P W
Sbjct: 38 LQITVISAKLKENKKNWFGPSP-------YVEVTVDGQSKKT-EKC-----NNTNSPKWK 84
Query: 486 EDLVFVAAEPFEPFLVVTVED---VTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVG 542
+ L + P L V + + +G A + + + + + E L G
Sbjct: 85 QPLTVI-VTPVSK-LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG 142
Query: 543 DETRPYAGRIHLRACLEG 560
D+ P L CL+G
Sbjct: 143 DK-EPTETIGDLSICLDG 159
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 4e-19
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 271 RMPFLYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQADKD--WDQVFAFDKEGLNST 328
M L V V KAK G + Y L + T + W+Q F F+ L+
Sbjct: 3 VMSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDL- 61
Query: 329 SLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGND 386
L V VW++ + +GTV L+ + + + +W +L+S+ + +
Sbjct: 62 GLTVEVWNKGLIWDT-----MVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMADS 111
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 3e-07
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 13/119 (10%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESM 68
L V V AK ++ + YV + + T R P W++ F ++ +
Sbjct: 7 LCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIA-VRGSQPSWEQDFMFEINRLDLG 62
Query: 69 PTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESS-VYYPLEKRSVFSQIKGEI 126
L + ++N T +G V I T + E + L+ +++ + EI
Sbjct: 63 ----LTVEVWNKGLIWD--TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMA--DSEI 113
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 4e-04
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDR-FNPRWNEQYTWD 646
LL VG++ A DG + + YV K V++ TI R P W + + ++
Sbjct: 5 SLLCVGVKKAKF-------DGAQEKFNTYVTLKVQN--VKSTTIAVRGSQPSWEQDFMFE 55
Query: 647 VYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL 688
+ LT+ V++ G D VG + + L T+
Sbjct: 56 INRLDLGLTVEVWNKGLI---------WDTMVGTVWIPLRTI 88
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 5e-19
Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 9/131 (6%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKT-KFRDLNPQWDERLEFLVHDAE 66
L V + +AK L D YV + Q +++ + P+W+E F V +
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-- 68
Query: 67 SMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEI 126
T L+ ++ DK G +G+ I GS Y + K + KGEI
Sbjct: 69 --GTTELKAKIF-DKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEY---KGEI 122
Query: 127 GLKVYYIDEDP 137
+ + + P
Sbjct: 123 WVALSFKPSGP 133
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-16
Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 16/140 (11%)
Query: 583 AKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDR-FNPRWNE 641
+ P G LEV + A L + D D YV + ++ P WNE
Sbjct: 5 SSGPHGTLEVVLVSAKGL---EDAD-FLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNE 60
Query: 642 QYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701
+ + V + T L +FD D+ VG+ + L + +
Sbjct: 61 TFIFTVSEGTTELKAKIFDKDVGTEDD--------AVGEATIPLEPVFVEG---SIPPTA 109
Query: 702 VLLPGGAKKMGEIEIAVRFT 721
+ + GEI +A+ F
Sbjct: 110 YNVVKDEEYKGEIWVALSFK 129
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 25/133 (18%)
Query: 429 LRLTVIQTQDLQ---PGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWN 485
L + ++ + L+ + +P YV+ Q K+ + G P WN
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDP-------YVQLTCRTQDQKS-NVAEG----MGTTPEWN 59
Query: 486 EDLVFVAAEPFEPFLVVTVED---VTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVG 542
E +F +E L + D T +VG A I + V +N+V
Sbjct: 60 ETFIFTVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVF----VEGSIPPTAYNVVK 114
Query: 543 DETRPYAGRIHLR 555
DE Y G I +
Sbjct: 115 DEE--YKGEIWVA 125
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 9e-19
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 7 RKLIVEVCNAKNLMPKDGQGTASAYVIV--DFDGQRRRTKTKFRDLNPQWDERLEFLVHD 64
K+ + V AKNL KD + + D GQ T T L+P+W++ + V
Sbjct: 5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV-- 62
Query: 65 AESMPTEILEINLYNDKKTGKRS--TFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQ- 121
T+ + I+++N KK K+ FLG V++ + +++ L K +
Sbjct: 63 ---GKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTD 119
Query: 122 -IKGEIGLKV 130
++G+I + +
Sbjct: 120 AVRGQIVVSL 129
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-10
Identities = 21/136 (15%), Positives = 51/136 (37%), Gaps = 16/136 (11%)
Query: 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW--VRTRTILDRFNPRWNEQYTWDV 647
+ + + A NL KD D + T T+ + +P+WN+ Y V
Sbjct: 7 IRLTVLCAKNLAK---KDFF-RLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV 62
Query: 648 YDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGG 707
+ +TI V+++ + + + +G +R+ + + + L +
Sbjct: 63 GKTDS-ITISVWNHKKIHKKQ-----GAGFLGCVRLLSNAISRLKDT-GYQRLDLCKLNP 115
Query: 708 AKKM---GEIEIAVRF 720
+ G+I ++++
Sbjct: 116 SDTDAVRGQIVVSLQT 131
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 7e-18
Identities = 41/200 (20%), Positives = 67/200 (33%), Gaps = 41/200 (20%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV------DFDGQRRRTKTKFRDLNPQWDERLE 59
R + V+V L KD G + YV V +TKT + LNP+W+E +
Sbjct: 7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEIL 66
Query: 60 FLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSV-----YYPLE 114
F V + ++ D+ R FLG+V + + L
Sbjct: 67 FRVLP----QRHRILFEVF-DENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH 121
Query: 115 KRSVFSQIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEE 174
RS S++KG + LK+ Y+ E ++ +E
Sbjct: 122 PRSHKSRVKGYLRLKMTYLP-------------------------KNGSEDENADQAEEL 156
Query: 175 KPATVEGKKEEEKPKEEKPP 194
+P V + + PP
Sbjct: 157 EPGWVVLDQPDAATHLPHPP 176
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 1e-14
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 23/151 (15%)
Query: 581 QLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW------VRTRTILDR 634
+L ++ V + L KD G +D YV V+T+TI
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAK---KDIL-GASDPYVRVTLYDPMSGILTSVQTKTIKKS 56
Query: 635 FNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVY 694
NP+WNE+ + V + VFD R RD+ +G++ V L L T
Sbjct: 57 LNPKWNEEILFRVLPQRHRILFEVFDENRLTRDD--------FLGQVDVPLYPLPTENPR 108
Query: 695 LNSYSLTVLLP-----GGAKKMGEIEIAVRF 720
+ ++ G + + + +
Sbjct: 109 MERPYTFKDFVLHPRSHKSRVKGYLRLKMTY 139
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 1e-17
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 16/139 (11%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV------DFDGQRRRTKTKFRDLNPQWDERLE 59
+R + V V L KD G + YV V + +TKT + LNP+W+E +
Sbjct: 19 SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78
Query: 60 FLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVY-----YPLE 114
F VH L ++ D+ R FLG+V + + L
Sbjct: 79 FRVHP----QQHRLLFEVF-DENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLH 133
Query: 115 KRSVFSQIKGEIGLKVYYI 133
RS S++KG + LK+ Y+
Sbjct: 134 PRSHKSRVKGYLRLKMTYL 152
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 7e-14
Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 23/148 (15%)
Query: 584 KSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW------VRTRTILDRFNP 637
+ ++ V + L KD G +D YV V+T+TI NP
Sbjct: 16 EENSRIVRVRVIAGIGLAK---KDIL-GASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNP 71
Query: 638 RWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNS 697
+WNE+ + V+ L VFD R RD+ +G++ V L L T L
Sbjct: 72 KWNEEILFRVHPQQHRLLFEVFDENRLTRDD--------FLGQVDVPLYPLPTENPRLER 123
Query: 698 YSLTVLLP-----GGAKKMGEIEIAVRF 720
++ G + + + +
Sbjct: 124 PYTFKDFVLHPRSHKSRVKGYLRLKMTY 151
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 9e-08
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 23/141 (16%)
Query: 269 VDRMPFLYVRVLKAKR-AGNVSNGSL--YAKLVIG------THSIKTKSQADKD----WD 315
+ + VRV+ A G+ Y ++ + S++TK+ K W+
Sbjct: 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTI-KKSLNPKWN 74
Query: 316 QVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDS-PLAPQW 374
+ F L V+ E + ++ LG V L +P P P +
Sbjct: 75 EEILFRVHPQQHR-LLFEVFDENRLTRDD----FLGQVDVPLYPLPTENPRLERPYTFKD 129
Query: 375 YSLESEKLPGN---DVMLAVW 392
+ L + L +
Sbjct: 130 FVLHPRSHKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 24/150 (16%)
Query: 420 VYLSPKLWYLRLTVIQTQDLQP----GSGSEPKVRSPELYVKGQLG---AQLFKTGRTSV 472
+ +R+ VI L G+ S+P YV+ L + + +T
Sbjct: 13 LEDEENSRIVRVRVIAGIGLAKKDILGA-SDP-------YVRVTLYDPMNGVLTSVQTKT 64
Query: 473 GLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVED---VTNGCSVGHARIQMSTVERRIDD 529
S NP WNE+++F P + L+ V D +T +G + + +
Sbjct: 65 ---IKKSLNPKWNEEILFR-VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120
Query: 530 RAEPK-SRWFNLVG-DETRPYAGRIHLRAC 557
P + F L G + L+
Sbjct: 121 LERPYTFKDFVLHPRSHKSRVKGYLRLKMT 150
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 2e-17
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV-----DFDGQRRRTKTKFRDLNPQWDERLEF 60
+LIV + AK+L ++ + YV + D +RRTKT + L P+W++ +
Sbjct: 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76
Query: 61 LVHDAESMPTEILEINLYN-DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114
+LEI L++ + + S FLG++ I T + +Y L+
Sbjct: 77 SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL--DDEPHWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 19/115 (16%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWV-----RTRTILDRFNPRWNEQ 642
L V I GA +L ++ + YV + P RT+T+ P+WN+
Sbjct: 18 HQLIVTILGAKDLPS---REDG-RPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 73
Query: 643 YTWDVYDPCT----VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV 693
+ + +L I ++D R + +E + +G+I + L T +
Sbjct: 74 FIYSPVHRREFRERMLEITLWDQARVREEE-----SEF-LGEILIELETALLDDE 122
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 9e-05
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 22/118 (18%)
Query: 275 LYVRVLKAKRAGNVSNGSL---YAKLVI---GTHSIKTKSQADKD-----WDQVFAFD-- 321
L V +L AK + +G Y K+ + K +++ K W+Q F +
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 79
Query: 322 -KEGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLE 378
+ LE+++W + + EE LG +L +L+ P WY L+
Sbjct: 80 HRREFRERMLEITLWDQARVREEE--SEFLGEILIELETA------LLDDEPHWYKLQ 129
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 4e-17
Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 11/129 (8%)
Query: 270 DRMPFLYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQADKD--WDQVFAFDKEGLNS 327
+ L V V KAK G + Y L + T + W+Q F F+ L+
Sbjct: 11 GILSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGSQPSWEQDFMFEINRLD- 69
Query: 328 TSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDV 387
L V VW++ + +GTV L+ + + + +W +L+S+ + +
Sbjct: 70 LGLTVEVWNKGLIWDT-----MVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMADSE 121
Query: 388 MLAVWIGTQ 396
+ T
Sbjct: 122 ICGTKDPTF 130
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 4e-05
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 11/118 (9%)
Query: 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAE 66
L V V AK ++ T YV + T R P W++ F ++
Sbjct: 14 SLLCVGVKKAKFDGAQEKFNT---YVTLKVQNVESTTIA-VRGSQPSWEQDFMFEINR-- 67
Query: 67 SMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESS-VYYPLEKRSVFSQIK 123
L + ++N T +G V I T + E + L+ +++ + +
Sbjct: 68 --LDLGLTVEVWNKGLI--WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSE 121
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 8e-17
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF---DGQRRRTKTKFRDLNPQWDERLEFLV 62
L V++ A+ L KD GT+ +V + + TK K ++LNP W+E F
Sbjct: 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84
Query: 63 HDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
E + IL + + + + R+ +G+V I + + + + L+ S
Sbjct: 85 FPYEKVVQRILYLQVLDYDRFS-RNDPIGEVSIPLNKV-DLTQMQTFWKDLKPSGPSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 19/121 (15%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYT 644
L V I A L KD + GT+D +V P + T+ NP WNE +
Sbjct: 26 STLTVKIMKAQELPA---KDFS-GTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFL 81
Query: 645 WDVYDPCTV----LTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSL 700
++ + V L + V D R+ R++ +G++ + L+ +D ++ L
Sbjct: 82 FEGFPYEKVVQRILYLQVLDYDRFSRND--------PIGEVSIPLNKVDLTQMQTFWKDL 133
Query: 701 T 701
Sbjct: 134 K 134
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 23/120 (19%)
Query: 275 LYVRVLKAKRAGNVSNGSL---YAKLVI---GTHSIKTKSQ---ADKDWDQVFAFD---K 322
L V+++KA+ + K+ + H ++TK + + W++ F F+
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 323 EGLNSTSLEVSVWSEEK-KENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEK 381
E + L + V ++ N+ +G V L +V + + W L+
Sbjct: 88 EKVVQRILYLQVLDYDRFSRND-----PIGEVSIPLNKVDL-----TQMQTFWKDLKPSG 137
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-16
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV-----DFDGQRRRTKTKFRDLNPQWDERLEF 60
N L + AK L P D G A YV + + RTKT NP W+E L++
Sbjct: 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEK 115
E M + L I++ ++ K G + F+G+ + + K + LE+
Sbjct: 88 HGITEEDMQRKTLRISVCDEDKFG-HNEFIGETRFSLKKL-KANQRKNFNICLER 140
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 7e-08
Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 21/122 (17%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW-----VRTRTILDRFNPRWNEQ 642
L+ I A L P D G D YV P +RT+T+ + NP WNE
Sbjct: 29 SNLQCTIIRAKGLKP---MDSN-GLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNET 84
Query: 643 YTWDVYDPC----TVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSY 698
+ L I V D ++ +E +G+ R L L N+ +
Sbjct: 85 LQYHGITEEDMQRKTLRISVCDEDKFGHNE--------FIGETRFSLKKLKANQRKNFNI 136
Query: 699 SL 700
L
Sbjct: 137 CL 138
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 4e-16
Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV-----DFDGQRRRTKTKFRDLNPQWDERLEF 60
+R L++ + K L+ K GT YV + D + ++T+T +P + E F
Sbjct: 26 DRVLLLHIIEGKGLISKQP-GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFF 84
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
V + + + L + ++N ++S +G + + E S +Y L +
Sbjct: 85 PVQEEDD--QKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGR 142
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 19/112 (16%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVR-----TRTILDRFNPRWNEQ 642
+L + I L+ K GT D YV P+ R T+T+ D +P ++E
Sbjct: 27 RVLLLHIIEGKGLIS---KQP--GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEH 81
Query: 643 YTWDV--YDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNR 692
+ + V D L + V++ R + +G + + +L T
Sbjct: 82 FFFPVQEEDDQKRLLVTVWNRASQSR-------QSGLIGCMSFGVKSLLTPD 126
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 4e-16
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV-----DFDGQRRRTKTKFRDLNPQWDERLEF 60
+LIV + AK+L ++ + YV + D +RRTKT + L P+W++ +
Sbjct: 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79
Query: 61 LVHDAESMPTEILEINLYN-DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
+LEI L++ + + S FLG++ I T + +Y L+
Sbjct: 80 SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL--DDEPHWYKLQTHD 135
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 5e-05
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVR-----TRTILDRFNPRWNEQ 642
L V I GA +L + + YV + P T+T+ P+WN+
Sbjct: 21 HQLIVTILGAKDLPSREDG----RPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 76
Query: 643 YTWDVYDPCT----VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV 693
+ + +L I ++D R + +E + +G+I + L T +
Sbjct: 77 FIYSPVHRREFRERMLEITLWDQARVREEE-----SEF-LGEILIELETALLDDE 125
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 22/121 (18%)
Query: 275 LYVRVLKAKRAGNVSNGSL---YAKLVI---GTHSIKTKSQADKD-----WDQVFAFD-- 321
L V +L AK + +G Y K+ + K +++ K W+Q F +
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82
Query: 322 -KEGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESE 380
+ LE+++W + + EE LG +L +L+ P WY L++
Sbjct: 83 HRREFRERMLEITLWDQARVREEES--EFLGEILIELETA------LLDDEPHWYKLQTH 134
Query: 381 K 381
Sbjct: 135 D 135
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 1e-15
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIV--------------DFDGQRRRTKTKFRDL 50
LI+ + A+NL+P+D G + +V V +RRTK + L
Sbjct: 16 DLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSL 75
Query: 51 NPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVY 110
NP+W++ + + E + + LE+ ++ D + FLG+V I S+ + + +
Sbjct: 76 NPEWNQTVIYKSISMEQLMKKTLEVTVW-DYDRFSSNDFLGEVLIDLSSTSH-LDNTPRW 133
Query: 111 YPLEKRS 117
YPL++++
Sbjct: 134 YPLKEQT 140
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 30/132 (22%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWV--------------RTRTILD 633
G L + I A NL+P +D G +D +V P RT+ +
Sbjct: 18 GNLIIHILQARNLVP---RDNN-GYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK 73
Query: 634 RFNPRWNEQYTWDVYDP----CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD 689
NP WN+ + L + V+D R+ ++ +G++ + LS+
Sbjct: 74 SLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSND--------FLGEVLIDLSSTS 125
Query: 690 TNRVYLNSYSLT 701
Y L
Sbjct: 126 HLDNTPRWYPLK 137
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 314 WDQVFAFD---KEGLNSTSLEVSVWSEEK-KENEECTENCLGTVLFDLQEVPKRVPPDSP 369
W+Q + E L +LEV+VW ++ N+ LG VL DL
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSND-----FLGEVLIDLSSTSHLDN---- 129
Query: 370 LAPQWYSLESE 380
P+WY L+ +
Sbjct: 130 -TPRWYPLKEQ 139
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-15
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF---DGQRRRTKTKFRDLNPQWDERLEFLV 62
N +L+V + A L D GT+ YV V ++ TK + LNP ++E+ F V
Sbjct: 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 63 HDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114
+E + + L + +Y D + +G+ K+ +T G + + L+
Sbjct: 93 PYSE-LGGKTLVMAVY-DFDRFSKHDIIGEFKVPMNTV-DFGHVTEEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYT 644
L VGI A L + GT+D YV P K T+ NP +NEQ+T
Sbjct: 34 NQLLVGIIQAAELPALDMG----GTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 89
Query: 645 WDVYD---PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD 689
+ V L + V+D R+ + + +G+ +V ++T+D
Sbjct: 90 FKVPYSELGGKTLVMAVYDFDRFSKHDI--------IGEFKVPMNTVD 129
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 2e-15
Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 26/138 (18%)
Query: 6 NRKLIVEVCNAKNLMPKD-----------GQGTASAYVIVDFDGQR-RRTKTKFRDLNPQ 53
N L +++C A +L P Y+ ++ D R +T TK + +P
Sbjct: 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPA 64
Query: 54 WDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSES-SVYYP 112
W + V + +E+ ++ F+ I + GS +
Sbjct: 65 WHDEFVTDVCNGRK-----IELAVF-HDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118
Query: 113 LEKRSVFSQIKGEIGLKV 130
LE +G++ + +
Sbjct: 119 LEP-------EGKVYVII 129
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-12
Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 27/149 (18%)
Query: 586 PIGLLEVGIRGATNLLP-------VKTKDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNP 637
GLL++ I A +L P D Y+ + +T T +P
Sbjct: 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSP 63
Query: 638 RWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL--DTNRVYL 695
W++++ DV + + + VF + G D V ++ L + +R +
Sbjct: 64 AWHDEFVTDVCNG-RKIELAVFHDAPI--------GYDDFVANCTIQFEELLQNGSRHFE 114
Query: 696 NSYSLTVLLPGGAKKMGEIEIAVRFTCSS 724
+ L + G++ + + + SS
Sbjct: 115 DWIDL--------EPEGKVYVIIDLSGSS 135
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-08
Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 26/143 (18%)
Query: 428 YLRLTVIQTQDLQPGSGSEPKVRSPEL-------YVKGQLGAQLFKTGRTSVGLSPSSSA 480
L++ + + L+P + S P Y+ + + G+T+ +
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDS--RIGQTAT---KQKTN 61
Query: 481 NPTWNEDLVFVAAEPFEPFLVVTVED---VTNGCSVGHARIQMSTVERRIDDRAEPKSRW 537
+P W+++ V + + + V + V + IQ + + E W
Sbjct: 62 SPAWHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFE---DW 116
Query: 538 FNLVGDETRPYAGRIHLRACLEG 560
+L P G++++ L G
Sbjct: 117 IDL-----EP-EGKVYVIIDLSG 133
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-15
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV-----DFDGQRRRTKTKFRDLNPQWDERLEF 60
N L + V + K+L+ +DG + YV +R+TK + NP ++E L +
Sbjct: 19 NGTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVY 77
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
+ E++ L++++ + + + FLG + + F + E+ +Y L +
Sbjct: 78 SGYSKETLRQRELQLSVLSAESLR-ENFFLGGITLPLKDF-NLSKETVKWYQLTAAT 132
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 26/125 (20%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYV-------VAKYGPKWVRTRTILDRFNPRWN 640
G L + + +L+ +DG + YV K + +T+ NP +N
Sbjct: 20 GTLFIMVMHIKDLVT---EDG--ADPNPYVKTYLLPDTHKTSKR--KTKISRKTRNPTFN 72
Query: 641 EQYTWDVYDPCT----VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLN 696
E + Y T L + V + + +G I + L + ++ +
Sbjct: 73 EMLVYSGYSKETLRQRELQLSVLSAESLRENFF--------LGGITLPLKDFNLSKETVK 124
Query: 697 SYSLT 701
Y LT
Sbjct: 125 WYQLT 129
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 28/122 (22%)
Query: 275 LYVRVLKAK----RAGNVSNGSLYAKLVI---GTHSIKTKSQADKD-----WDQVFAFD- 321
L++ V+ K G N Y K + + K K++ + ++++ +
Sbjct: 22 LFIMVMHIKDLVTEDGADPNP--YVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSG 79
Query: 322 --KEGLNSTSLEVSVWSEEK-KENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLE 378
KE L L++SV S E +EN LG + L++ +WY L
Sbjct: 80 YSKETLRQRELQLSVLSAESLRENF-----FLGGITLPLKD----FNLSKET-VKWYQLT 129
Query: 379 SE 380
+
Sbjct: 130 AA 131
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 4e-15
Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 22/141 (15%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYT 644
V + AT + D T D YV RTR + NP WNE +
Sbjct: 3 HKFTVVVLRATKVTKGAFGDML-DTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61
Query: 645 WDVYDPCT-VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703
+ + VL I + D + D +G +S++ +
Sbjct: 62 FILDPNQENVLEITLMD-----AN----YVMDETLGTATFTVSSMKVGEKKEVPFIF--- 109
Query: 704 LPGGAKKMGEIEIAVRFTCSS 724
++ E+ + + +S
Sbjct: 110 -----NQVTEMVLEMSLEVAS 125
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-14
Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 17/131 (12%)
Query: 6 NRKLIVEVCNAKNLM---PKDGQGTASAYVIV---DFDGQRRRTKTKFRDLNPQWDERLE 59
+ K V V A + D T YV + R+RT+ D+NP W+E E
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61
Query: 60 FLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVF 119
F++ + +LEI L D LG S+ KVG + V + + +
Sbjct: 62 FILDPNQE---NVLEITLM-DANYVM-DETLGTATFTVSSM-KVGEKKEVPFIFNQVT-- 113
Query: 120 SQIKGEIGLKV 130
+ + + +
Sbjct: 114 ---EMVLEMSL 121
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 7e-11
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 24/120 (20%)
Query: 275 LYVRVLKAKRAGNVSNGSL------YAKLVIGT---HSIKTKSQADKD----WDQVFAFD 321
V VL+A + + G + Y +L I T +T+ + D W++ F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF-NNDINPVWNETFEFI 63
Query: 322 KEGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEK 381
+ LE+++ +E LGT F + + + +
Sbjct: 64 LDPNQENVLEITLMDANYVMDET-----LGTATFTVSSMKVGEKKE-----VPFIFNQVT 113
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 17/131 (12%)
Query: 428 YLRLTVIQTQDLQPGSGSEPKVRS-PELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNE 486
+ V++ + G+ + P YV+ + RT ++ NP WNE
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDP--YVELFISTTPDSRKRTRH---FNNDINPVWNE 58
Query: 487 DLVFVAAEPFEPFLVVTV--EDVTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDE 544
F+ E L +T+ + ++G A +S+++ E K F
Sbjct: 59 TFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVG-----EKKEVPFIFNQVT 113
Query: 545 TRPYAGRIHLR 555
+ +
Sbjct: 114 E----MVLEMS 120
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 6e-15
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF---DGQRRRTKTKFRDLNPQWDERLEFLV 62
N +L+V + A L D GT+ YV V ++ TK + LNP ++E+ F V
Sbjct: 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100
Query: 63 HDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114
+E + + L + +Y D + +G+ K+ +T G + + L+
Sbjct: 101 PYSE-LGGKTLVMAVY-DFDRFSKHDIIGEFKVPMNTV-DFGHVTEEWRDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 8e-07
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYT 644
L VGI A L D GT+D YV P K T+ NP +NEQ+T
Sbjct: 42 NQLLVGIIQAAELPA---LDMG-GTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 97
Query: 645 WDVYD---PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD 689
+ V L + V+D R+ + + +G+ +V ++T+D
Sbjct: 98 FKVPYSELGGKTLVMAVYDFDRFSKHDI--------IGEFKVPMNTVD 137
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 22/119 (18%)
Query: 275 LYVRVLKAK--RAGNVSNGS-LYAKLVI---GTHSIKTKSQADK---DWDQVFAFD--KE 323
L V +++A A ++ S Y K+ + +TK +++ F F
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 324 GLNSTSLEVSVWSEEK-KENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEK 381
L +L ++V+ ++ +++ +G + V +W L+S +
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHD-----IIGEFKVPMNTVDFGHV-----TEEWRDLQSAE 152
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-14
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQR---RRTKTKFRDLNPQWDERLEF 60
+IV + A+NL D GT+ YV V +R ++T TK R+LNP ++E F
Sbjct: 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAF 74
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGST 99
+ E + + I + DK R+ +GK+ ++ +
Sbjct: 75 DI-PTEKLRETTIIITVM-DKDKLSRNDVIGKIYLSWKS 111
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 28/127 (22%)
Query: 275 LYVRVLKAK--RAGNVSNGS-LYAKLVI---GTHSIKTKSQADKD-----WDQVFAFD-- 321
+ V ++KA+ +A ++ S Y K+ + K K+ K +++ FAFD
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 322 KEGLNSTSLEVSVWSEEK-KENEECTENCLGTVLFDLQEVPKRVP--------PDSPLAP 372
E L T++ ++V ++K N+ +G + + P V P P+A
Sbjct: 78 TEKLRETTIIITVMDKDKLSRNDV-----IGKIYLSWKSGPGEVKHWKDMIARPRQPVA- 131
Query: 373 QWYSLES 379
QW+ L++
Sbjct: 132 QWHQLKA 138
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 20/111 (18%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAK--YGPKWV---RTRTILDRFNPRWNEQ 642
+ V I A NL + GT+D YV Y K V +T T NP +NE
Sbjct: 16 NSIIVNIIKARNLKAMDIG----GTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNES 71
Query: 643 YTWDVYD---PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT 690
+ +D+ T + I V D + R++ +GKI + +
Sbjct: 72 FAFDIPTEKLRETTIIITVMDKDKLSRNDV--------IGKIYLSWKSGPG 114
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 1e-14
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQR---RRTKTKFRDLNPQWDERLEF 60
KLIV V +NL+ G + YV + D +R R+T + LNP +D+ +F
Sbjct: 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81
Query: 61 LVHDAESMPTEILEINLYN-DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
V E + L++ + N K LGKV +A ++ + + +Y L + S
Sbjct: 82 SVSLPE-VQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEE-LAKGWTQWYDLTEDS 137
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 23/124 (18%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYV-------VAKYGPKWVRTRTILDRFNPRWN 640
L V + NL+ + +D YV + G + +T NP ++
Sbjct: 24 NKLIVVVHACRNLIAF-----SEDGSDPYVRMYLLPDKRRSGRR--KTHVSKKTLNPVFD 76
Query: 641 EQYTWDVYD---PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNS 697
+ + + V L + V ++G + + +GK+ V L++ + + +
Sbjct: 77 QSFDFSVSLPEVQRRTLDVAVKNSGGFLSKD------KGLLGKVLVALASEELAKGWTQW 130
Query: 698 YSLT 701
Y LT
Sbjct: 131 YDLT 134
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 19/122 (15%)
Query: 275 LYVRVLKAKR-AGNVSNGSL-YAKLVI---GTHSIKTKSQADKD-----WDQVFAFD--K 322
L V V + +GS Y ++ + S + K+ K +DQ F F
Sbjct: 26 LIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL 85
Query: 323 EGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKL 382
+ +L+V+V + +++ + LG VL L QWY L +
Sbjct: 86 PEVQRRTLDVAVKNSGGFLSKD--KGLLGKVLVALASEELAKG-----WTQWYDLTEDSG 138
Query: 383 PG 384
P
Sbjct: 139 PS 140
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 2e-14
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 27/137 (19%)
Query: 8 KLIVEVCNAKNLMPKD----------GQGTASAYVIVDFDGQR-RRTKTKFRDLNPQWDE 56
L V + A L P G Y+ V D R +T TK + P ++E
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 57 RLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVY---YPL 113
V D LE+ ++ + F+ + + S + L
Sbjct: 90 EFCANVTDG-----GHLELAVF-HETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDL 143
Query: 114 EKRSVFSQIKGEIGLKV 130
E +G++ + +
Sbjct: 144 EP-------EGKVFVVI 153
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 4e-12
Identities = 29/153 (18%), Positives = 48/153 (31%), Gaps = 20/153 (13%)
Query: 576 RAAAKQLAKSPIGLLEVGIRGATNLLPVKTK------DGTRGTTDAYVVAKYGPKWV-RT 628
R + G L V I A L P + D Y+ V +T
Sbjct: 17 RGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQT 76
Query: 629 RTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL 688
T P +NE++ +V D L + VF G D V ++ L
Sbjct: 77 STKQKTNKPTYNEEFCANVTDG-GHLELAVFHETPL--------GYDHFVANCTLQFQEL 127
Query: 689 DTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721
+++ V L + G++ + + T
Sbjct: 128 LRTTGASDTFEGWVDL----EPEGKVFVVITLT 156
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 2e-09
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 23/142 (16%)
Query: 428 YLRLTVIQTQDLQPGSGSEPKVRSPEL------YVKGQLGAQLFKTGRTSVGLSPSSSAN 481
YLR+ + + LQP S + Y+ + + G+TS +
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQV--RVGQTST---KQKTNK 84
Query: 482 PTWNEDLVFVAAEPFEPFLVVTVED---VTNGCSVGHARIQMSTVERRIDDRAEPKSRWF 538
PT+NE+ + L + V + V + +Q + R + W
Sbjct: 85 PTYNEEFCANVTDGGH--LELAVFHETPLGYDHFVANCTLQFQELLRTTGAS-DTFEGWV 141
Query: 539 NLVGDETRPYAGRIHLRACLEG 560
+L P G++ + L G
Sbjct: 142 DL-----EP-EGKVFVVITLTG 157
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-14
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTAS-AYVIVDF---DGQRRRTKTKFRDLNPQWDERLEFL 61
+ +V + A+ L D Q S Y+ + + +T+ + L+P +DE F
Sbjct: 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80
Query: 62 VHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
+ L + R +G+V I
Sbjct: 81 GIPYTQIQELALHFTIL-SFDRFSRDDIIGEVLI 113
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 18/109 (16%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYT 644
V I+ A L D T+D Y+ P V+TR + +P ++E +T
Sbjct: 22 KAFVVNIKEARGLPA---MDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFT 78
Query: 645 WDVYDPCTV----LTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD 689
+ + L + R+ RD+ +G++ + LS ++
Sbjct: 79 FYGIPYTQIQELALHFTILSFDRFSRDDI--------IGEVLIPLSGIE 119
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 3e-14
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV----DFDGQ-RRRTKTKFRDLNPQWDERLEF 60
LIV V +AKNL+P D G + YV + D + +++TKT LNP+W+E F
Sbjct: 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
+ +++ L + ++ D R+ F+G + S K G + ++ L +
Sbjct: 90 QLKESDKDRR--LSVEIW-DWDLTSRNDFMGSLSFGISELQKAGVDG--WFKLLSQE--- 141
Query: 121 QIKGEI 126
+GE
Sbjct: 142 --EGEY 145
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-08
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 21/114 (18%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP------KWVRTRTILDRFNPRWNE 641
+L V +R A NL+P D G +D YV K P K +T+TI NP WNE
Sbjct: 31 EVLIVVVRDAKNLVP---MD-PNGLSDPYVKLKLIPDPKSESKQ-KTKTIKCSLNPEWNE 85
Query: 642 QYTWDVY--DPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV 693
+ + + D L++ ++D R++ +G + +S L V
Sbjct: 86 TFRFQLKESDKDRRLSVEIWDWDLTSRND--------FMGSLSFGISELQKAGV 131
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 6e-14
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV----DFDGQRRRTKTKFRDLNPQWDERLEFL 61
+ +L+V + A +L KD G + YV + D ++ +TK + LNP ++E +F
Sbjct: 19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKTLNPIFNETFQFS 77
Query: 62 VHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI-AGSTFAKVGSESSVYYPLEKRSVFS 120
V AE + L ++Y D R +G+V + A+ + ++ + +
Sbjct: 78 VPLAE-LAQRKLHFSVY-DFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK 135
Query: 121 QIKGEIGLKVYY 132
GE+ + Y
Sbjct: 136 ADLGELNFSLCY 147
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQR---RRTKTKFRDLNPQWDERLEF 60
L V + A NL D G + YV +G+R R+T K LNP ++E L F
Sbjct: 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 210
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
V ES+ L I + D + +G ++
Sbjct: 211 DVA-PESVENVGLSIAVV-DYDCIGHNEVIGVCRV 243
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 8e-10
Identities = 57/277 (20%), Positives = 90/277 (32%), Gaps = 61/277 (22%)
Query: 429 LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDL 488
L + ++Q DL + P YVK L K +T V + NP +NE
Sbjct: 22 LVVRILQALDLPAKDSN--GFSDP--YVKIYLLPDRKKKFQTKV---HRKTLNPIFNETF 74
Query: 489 VF--VAAEPFEPFLVVTVED---VTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNLV-G 542
F AE + L +V D + +G + + ++ + W +++ G
Sbjct: 75 QFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDN---LLELAEQPPDRPLWRDILEG 131
Query: 543 DETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIRGATNLLP 602
+ G ++ C GLL V I A+NL
Sbjct: 132 GSEKADLGELNFSLCYL-------------------------PTAGLLTVTIIKASNLKA 166
Query: 603 VKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVL 654
+ G +D YV A K +T + NP +NE +DV L
Sbjct: 167 MDLT----GFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 222
Query: 655 TIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN 691
+I V D +E +G RV D +
Sbjct: 223 SIAVVDYDCIGHNEV--------IGVCRVGPEAADPH 251
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 64/330 (19%), Positives = 109/330 (33%), Gaps = 75/330 (22%)
Query: 275 LYVRVLKAKR-AGNVSNGSL--YAKLVI---GTHSIKTKSQ---ADKDWDQVFAFD--KE 323
L VR+L+A SNG Y K+ + +TK + +++ F F
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 324 GLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLP 383
L L SV+ ++ + +G V+ D PPD PL W +
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDL----IGQVVLDNLLELAEQPPDRPL---WRDIL----- 129
Query: 384 GNDVMLAVWIGTQADEAFQEAWQSDSGGLIPETRAKVYLSPKLWYLRLTVIQTQDLQPGS 443
+ E + P L +T+I+ +L+
Sbjct: 130 ---------------------EGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMD 168
Query: 444 GSEPKVRSPELYVKGQL--GAQLFKTGRTSVGLSPSSSANPTWNEDLVF-VAAEPFEPF- 499
+ + YVK L + K +TS+ ++ NPT+NE LVF VA E E
Sbjct: 169 LT----GFSDPYVKASLISEGRRLKKRKTSI---KKNTLNPTYNEALVFDVAPESVENVG 221
Query: 500 LVVTVED---VTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDETRPYAGRIHLRA 556
L + V D + + +G R+ + W ++ + +P
Sbjct: 222 LSIAVVDYDCIGHNEVIGVCRVGPEAA------DPHGREHWAEMLANPRKPVE------- 268
Query: 557 CLEGGYHVLDEAAHVTSDVRAAAKQLAKSP 586
+H L E ++S + K
Sbjct: 269 ----HWHQLVEEKTLSSFTKGGKGLSEKEN 294
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYT 644
L V I A +L KD G +D YV P K +T+ NP +NE +
Sbjct: 20 DQLVVRILQALDLPA---KDSN-GFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 75
Query: 645 WDVYD---PCTVLTIGVFDNGRYKRDE 668
+ V L V+D R+ R +
Sbjct: 76 FSVPLAELAQRKLHFSVYDFDRFSRHD 102
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 8e-14
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 7/131 (5%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV----DFDGQRRRTKTKFRDLNPQWDERLEFL 61
N +L+V + A L D GT+ YV V D ++ TK + LNP ++E+ F
Sbjct: 18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKTLNPVFNEQFTFK 76
Query: 62 VHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQ 121
V +E + + L + +Y D + +G+ K+ +T +
Sbjct: 77 VPYSE-LAGKTLVMAVY-DFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134
Query: 122 IKGEIGLKVYY 132
G+I + Y
Sbjct: 135 KLGDICFSLRY 145
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQR---RRTKTKFRDLNPQWDERLEF 60
KL V + AKNL D G + YV + +G+R ++T K LNP ++E F
Sbjct: 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 208
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
V + + + + + D ++ +GKV +
Sbjct: 209 EVPFEQ-IQKVQVVVTVL-DYDKIGKNDAIGKVFV 241
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 8e-10
Identities = 51/253 (20%), Positives = 80/253 (31%), Gaps = 52/253 (20%)
Query: 429 LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDL 488
L + +IQ +L P YVK L K T V + NP +NE
Sbjct: 21 LLVGIIQAAELPALDMG--GTSDP--YVKVFLLPDKKKKFETKV---HRKTLNPVFNEQF 73
Query: 489 VF--VAAEPFEPFLVVTVED---VTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGD 543
F +E LV+ V D + +G ++ M+TV D W +L
Sbjct: 74 TFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV-----DFGHVTEEWRDLQSA 128
Query: 544 ETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPV 603
E + L G L V I A NL +
Sbjct: 129 EKEEQEKLGDICFSLRY-----------------------VPTAGKLTVVILEAKNLKKM 165
Query: 604 KTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLT 655
G +D YV K +T + NP +NE ++++V +
Sbjct: 166 DVG----GLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVV 221
Query: 656 IGVFDNGRYKRDE 668
+ V D + +++
Sbjct: 222 VTVLDYDKIGKND 234
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 47/304 (15%), Positives = 100/304 (32%), Gaps = 66/304 (21%)
Query: 275 LYVRVLKAKR-AGNVSNGSL--YAKLVI---GTHSIKTKSQ---ADKDWDQVFAFD--KE 323
L V +++A G+ Y K+ + +TK + +++ F F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 324 GLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLP 383
L +L ++V+ ++ + +G + V + Q E ++
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDI----IGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKL 136
Query: 384 GNDVMLAVWIGTQADEAFQEAWQSDSGGLIPETRAKVYLSPKLWYLRLTVIQTQDLQPGS 443
G D+ ++ A + L + +++ ++L+
Sbjct: 137 G-DICFSLRYVPTAGK-----------------------------LTVVILEAKNLKKMD 166
Query: 444 GSEPKVRSPELYVKGQL--GAQLFKTGRTSVGLSPSSSANPTWNEDLVF-VAAEPFEPF- 499
+ YVK L + K +T++ ++ NP +NE F V E +
Sbjct: 167 VG----GLSDPYVKIHLMQNGKRLKKKKTTI---KKNTLNPYYNESFSFEVPFEQIQKVQ 219
Query: 500 LVVTVEDVTNGCS---VGHARIQMSTVERRIDDRAEPKSRWFNLVGDETRPYAGRIHLRA 556
+VVTV D +G + ++ W +++ + RP A L+
Sbjct: 220 VVVTVLDYDKIGKNDAIGKVFVGYNS-------TGAELRHWSDMLANPRRPIAQWHTLQV 272
Query: 557 CLEG 560
E
Sbjct: 273 EEEV 276
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWD 646
L VGI A L D GT+D YV P K T+ NP +NEQ+T+
Sbjct: 21 LLVGIIQAAELPA---LDMG-GTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 76
Query: 647 VYD---PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703
V L + V+D R+ + + +G+ +V ++T+D V L
Sbjct: 77 VPYSELAGKTLVMAVYDFDRFSKHDI--------IGEFKVPMNTVDFGHVTEEWRDLQSA 128
Query: 704 LPGGAKKMGEIEIAVRFTCSS 724
+K+G+I ++R+ ++
Sbjct: 129 EKEEQEKLGDICFSLRYVPTA 149
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-13
Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 10/116 (8%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV----DFDGQRRRTKTKFRDLNPQWDERLEFL 61
+L V A + G YV +T K R L+ W+E L
Sbjct: 25 KAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81
Query: 62 VHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
+ + E +PT L + L R + G++++ V ++ + L+
Sbjct: 82 LAEEE-LPTATLTLTLR-TCDRFSRHSVAGELRLGLDGT-SVPLGAAQWGELKTSG 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 22/107 (20%)
Query: 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW----VRTRTILDRFNPRWNEQYTW 645
L V A G D YV + +T + + W E
Sbjct: 28 LFVTRLEAVTSNH-------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVL 80
Query: 646 DVYD---PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD 689
+ + P LT+ + R+ R G++R+ L
Sbjct: 81 PLAEEELPTATLTLTLRTCDRFSRHSV--------AGELRLGLDGTS 119
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-13
Identities = 16/114 (14%), Positives = 36/114 (31%), Gaps = 8/114 (7%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF------DGQRRRTKTKFRDLNPQWDERLE 59
N++ + + NL Q + V RT+ ++E
Sbjct: 42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFW 101
Query: 60 FLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPL 113
+ + + L +++ LG +I+ + + G S+ +Y L
Sbjct: 102 VSMSYPA-LHQKTLRVDVC-TTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 26/129 (20%)
Query: 266 YDLVDRMPFLYVRVLKAK--RAGNVSNGS-LYAKLVI------GTHSIKTKSQADKD--- 313
YD ++ + +++ A + ++ + T +T+ D
Sbjct: 38 YDEKNKQ--FAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLV 95
Query: 314 WDQVFAFD--KEGLNSTSLEVSVWSEEK-KENEECTENCLGTVLFDLQEVPKRVPPDSPL 370
+++VF L+ +L V V + ++ E CLG L E V
Sbjct: 96 FNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEE-----CLGGAQISLAE----VCRSGER 146
Query: 371 APQWYSLES 379
+ +WY+L S
Sbjct: 147 STRWYNLLS 155
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 21/111 (18%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYV------VAKYGPKWVRTRTILDRFNPRWNE 641
+ I +NL + + + ++ RTR + +NE
Sbjct: 43 KQFAILIIQLSNLSALLQQ----QDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNE 98
Query: 642 QYTWDVYD---PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD 689
+ + L + V R +E +G ++ L+ +
Sbjct: 99 VFWVSMSYPALHQKTLRVDVCTTDRSHLEEC--------LGGAQISLAEVC 141
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-13
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQR---RRTKTKFRDLNPQWDERLEF 60
KL V + AKNL D G + YV + +G+R ++T K LNP ++E F
Sbjct: 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
V E + + + + D ++ +GKV +
Sbjct: 84 EV-PFEQIQKVQVVVTVL-DYDKIGKNDAIGKVFV 116
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 28/129 (21%)
Query: 275 LYVRVLKAK--RAGNVSNGS-LYAK--LVIGTHSIKT------KSQADKDWDQVFAFD-- 321
L V +L+AK + +V S Y K L+ +K K+ + +++ F+F+
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 322 KEGLNSTSLEVSVWSEEK-KENEECTENCLGTVLFDLQEVPKRV--------PPDSPLAP 372
E + + V+V +K +N+ +G V + P P+A
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDA-----IGKVFVGYNSTGAELRHWSDMLANPRRPIA- 140
Query: 373 QWYSLESEK 381
QW++L+ E+
Sbjct: 141 QWHTLQVEE 149
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-13
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 6 NRKLIVEVCNAKNLMPKD-GQGTASAYVIVDF--DGQR---RRTKTKFRDLNPQWDERLE 59
+ L+V V L D + ++ YV D R R+T K +NP +DE L
Sbjct: 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLR 81
Query: 60 FLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
+ + ++ + L+ +++ R+TFLG+ +I ++ K+ + PL +
Sbjct: 82 YEIPESL-LAQRTLQFSVW-HHGRFGRNTFLGEAEIQMDSW-KLDKKLDHCLPLHGKI 136
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 7e-07
Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 23/112 (20%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYV-------VAKYGPKWVRTRTILDRFNPRWN 640
L V ++ L D + ++ YV ++ G + +T D NP ++
Sbjct: 23 QSLVVHVKECHQLAY---ADEAKKRSNPYVKTYLLPDKSRQGKR--KTSIKRDTVNPLYD 77
Query: 641 EQYTWDVYD---PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD 689
E +++ + L V+ +GR+ R+ +G+ +++ +
Sbjct: 78 ETLRYEIPESLLAQRTLQFSVWHHGRFGRNTF--------LGEAEIQMDSWK 121
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 25/124 (20%)
Query: 275 LYVRVLKAK--RAGNVSNGSL--YAKLVI---GTHSIKTKSQADKD-----WDQVFAFD- 321
L V V + + + Y K + + K K+ +D +D+ ++
Sbjct: 25 LVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEI 84
Query: 322 -KEGLNSTSLEVSVWSEEK-KENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLES 379
+ L +L+ SVW + N LG + D L L
Sbjct: 85 PESLLAQRTLQFSVWHHGRFGRNT-----FLGEAEIQMDS----WKLDKKL-DHCLPLHG 134
Query: 380 EKLP 383
+
Sbjct: 135 KISA 138
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 4e-13
Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 13/122 (10%)
Query: 6 NRKLIVEVCNAKNLMP-------KDGQGTASAYVIVDF---DGQRRRTKTKFRDLNPQWD 55
+ L V V A++L P + ++ YV + ++T K + P ++
Sbjct: 25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFE 84
Query: 56 ERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEK 115
ER F + E L + + D R +GKV + + + L
Sbjct: 85 ERYTFEIPFLE-AQRRTLLLTVV-DFDKFSRHCVIGKVSVPLCE-VDLVKGGHWWKALIP 141
Query: 116 RS 117
Sbjct: 142 SG 143
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-09
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 17/123 (13%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTR---GTTDAYVVAKYGP---KWVRTRTILDRFNPRWNE 641
L V + A +L P + DG+R ++ YV P +T P + E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 642 QYTWDVYD---PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSY 698
+YT+++ L + V D ++ R +GK+ V L +D +
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCV--------IGKVSVPLCEVDLVKGGHWWK 137
Query: 699 SLT 701
+L
Sbjct: 138 ALI 140
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 13/71 (18%)
Query: 314 WDQVFAFD--KEGLNSTSLEVSVWSEEK-KENEECTENCLGTVLFDLQEVPKRVPPDSPL 370
+++ + F+ +L ++V +K + +G V L EV
Sbjct: 83 FEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHC-----VIGKVSVPLCEVDL-----VKG 132
Query: 371 APQWYSLESEK 381
W +L
Sbjct: 133 GHWWKALIPSG 143
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 5e-13
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQR---RRTKTKFRDLNPQWDERLEF 60
L V V A++L D G + YV V+ +R ++T K N ++E F
Sbjct: 29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 88
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
+ ES+ +E + D + G R+ +G++ +
Sbjct: 89 DI-PCESLEEISVEFLVL-DSERGSRNEVIGRLVL 121
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 9e-04
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 17/93 (18%)
Query: 406 QSDSGGLIPETRAKVYLSPKLWYL----RLTV--IQTQDLQPGSGSEPKVRSPELYVKGQ 459
S GG IP R ++ +S L Y LTV ++ + L S + YVK
Sbjct: 5 ISGGGGGIPSGRGELLVS--LCYQSTTNTLTVVVLKARHLPKSDVS----GLSDPYVKVN 58
Query: 460 L--GAQLFKTGRTSVGLSPSSSANPTWNEDLVF 490
L + +T V + N +NE VF
Sbjct: 59 LYHAKKRISKKKTHV---KKCTPNAVFNELFVF 88
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 6e-13
Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQR---RRTKTKFRDLNPQWDERLEF 60
LIV + +L D G + +V + D + +T+ K + LNP+++E +
Sbjct: 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
+ + + L+I+++ D GK + ++G ++
Sbjct: 96 DIK-HSDLAKKSLDISVW-DYDIGKSNDYIGGCQL 128
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 28/134 (20%)
Query: 275 LYVRVLKAK--RAGNVSNGS-LYAKLVI---GTHSIKTKSQADKD-----WDQVFAFD-- 321
L V +++ A + + S + KL + K K+Q K +++ F +D
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 322 KEGLNSTSLEVSVW-SEEKKENEECTENCLGTVLFDLQEVPKRVP--------PDSPLAP 372
L SL++SVW + K N+ +G + +R+ D +
Sbjct: 99 HSDLAKKSLDISVWDYDIGKSND-----YIGGCQLGISAKGERLKHWYECLKNKDKKIE- 152
Query: 373 QWYSLESEKLPGND 386
+W+ L++E +D
Sbjct: 153 RWHQLQNENHVSSD 166
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 24/115 (20%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAK----YGPKWV---RTRTILDRFNPRWN 640
G L VGI +L + G +D +V K +T+ NP +N
Sbjct: 37 GGLIVGIIRCVHLAAMDAN----GYSDPFV--KLWLKPDMGKKAKHKTQIKKKTLNPEFN 90
Query: 641 EQYTWDVYD---PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNR 692
E++ +D+ L I V+D K ++ +G ++ +S
Sbjct: 91 EEFFYDIKHSDLAKKSLDISVWDYDIGKSNDY--------IGGCQLGISAKGERL 137
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 1e-12
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASA-YVIVDF--DGQR---RRTKTKFRDLNPQWDERLE 59
+L VEV A++L K G + A YV V +G ++T+ + L+P + + L
Sbjct: 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88
Query: 60 FLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
F ++L++ ++ D F+G +I
Sbjct: 89 FDESPQG----KVLQVIVWGDYGRMDHKCFMGVAQI 120
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 17/120 (14%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAK--YGPKWV---RTRTILDRFNPRWNEQ 642
G LEV + A +L K G++ T YV + +TR +P + +
Sbjct: 30 GQLEVEVIRARSLTQ---KPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQS 86
Query: 643 YTWDVYDPCTVLTIGVF-DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701
+D VL + V+ D GR +G ++ L LD + + + Y L
Sbjct: 87 LVFDESPQGKVLQVIVWGDYGRMDHKCF--------MGVAQILLEELDLSSMVIGWYKLF 138
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 68.4 bits (166), Expect = 6e-12
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 11 VEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPT 70
V A++L T AY+ V F GQ RT + + NP+W ++++F +
Sbjct: 398 VSNFRAEHLWGDYTTAT-DAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDF--ENVLLSTG 454
Query: 71 EILEINLYNDKKTGKRSTFLGKVKI 95
L + ++ D G LG
Sbjct: 455 GPLRVQVW-DADYGWDDDLLGSCDR 478
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 1e-05
Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 11/130 (8%)
Query: 545 TRPYAGRIHLRACLEGGYHVLDEAA----HVTSDVRAAAKQLAKSPIGLLEVGIRGATNL 600
A + G H + S V + + L V A +L
Sbjct: 347 IMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVTNQDCCPRQRGLAHLVVSNFRAEHL 406
Query: 601 LPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYT-WDVYD-PCTVLTIGV 658
T TDAY+ +G + RT + + NPRW ++ +V L + V
Sbjct: 407 WGDYTTA-----TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQV 461
Query: 659 FDNGRYKRDE 668
+D D+
Sbjct: 462 WDADYGWDDD 471
|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
Score = 63.1 bits (152), Expect = 4e-10
Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 2/115 (1%)
Query: 134 DEDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKP 193
+ P + + ++ ADK E E K EK V E P +
Sbjct: 23 ETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEA 82
Query: 194 PEENT--NPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKTQE 246
T A+ A+ V A + P + + + + E+K
Sbjct: 83 ATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137
|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 1e-08
Identities = 32/189 (16%), Positives = 50/189 (26%), Gaps = 3/189 (1%)
Query: 135 EDPPAPAPEAAAVAEPATKPEAAVADKPPEK--AVGEEKKEEKPATVEGKKEEEKPKEEK 192
+ E E + VA A E E K EEK E
Sbjct: 45 TNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVV 104
Query: 193 PPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKTQELRLNEH 252
+ KP A AT ++ P A + + + V + + L+ E
Sbjct: 105 AETPSAEAKPKSDKETEAKPEATNQGDESKP-AAEANKTEKEVQPDVPKNTEKTLKPKEI 163
Query: 253 ELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQADK 312
+ S D VL ++R G++ N + + S D
Sbjct: 164 KFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALSNTNSKAKDH 223
Query: 313 DWDQVFAFD 321
F
Sbjct: 224 ASVGGEEFK 232
|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
Score = 55.7 bits (133), Expect = 7e-08
Identities = 16/99 (16%), Positives = 26/99 (26%)
Query: 148 AEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPP 207
E PE + A+ E E EG+ E E+ + + A
Sbjct: 21 GEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASN 80
Query: 208 AAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKTQE 246
AA P ++ + A +E
Sbjct: 81 EAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKE 119
|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
Score = 47.3 bits (111), Expect = 2e-05
Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 1/101 (0%)
Query: 147 VAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNP-KPAEA 205
+ PE + + + + +++ + E E +
Sbjct: 11 HHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVAT 70
Query: 206 PPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTETKTQE 246
A+ A+ A S K V ET + E
Sbjct: 71 ASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAE 111
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 2e-09
Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 5/101 (4%)
Query: 581 QLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNP 637
+ V + AT + D T D YV RTR + NP
Sbjct: 11 IVEHQYSHKFTVVVLRATKVTKGAFGD-MLDTPDPYVELFISTTPDSRKRTRHFNNDINP 69
Query: 638 RWNEQYTWDVYDP-CTVLTIGVFDNGRYKRDEAGKPGKDVR 677
WNE + + + VL I + D + G V
Sbjct: 70 VWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVS 110
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 55.3 bits (132), Expect = 7e-08
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 8 KLIVEVCNAKNLMPKDGQ---GTASAYVIV---DFDGQRRRTKTKFRDLNPQWDERLEFL 61
K V V A + T YV + R+RT+ D+NP W+E EF+
Sbjct: 19 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 78
Query: 62 VHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
+ + +LEI L D LG
Sbjct: 79 LDPNQE---NVLEITLM-DANYVM-DETLGTATF 107
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 53.8 bits (128), Expect = 3e-07
Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 21/194 (10%)
Query: 266 YDLVDRMPF--LYVRVLKAKRAGNVSNGSL------YAKLVIGTHS---IKTKSQADKD- 313
+ +V+ V VL+A + + G + Y +L I T +T+ + D
Sbjct: 9 HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF-NNDI 67
Query: 314 ---WDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPL 370
W++ F F + LE+++ +E GT F + + + P
Sbjct: 68 NPVWNETFEFILDPNQENVLEITLMDANYVMDETL-----GTATFTVSSMKVGEKKEVPF 122
Query: 371 APQWYSLESEKLPGNDVMLAVWIGTQADEAFQEAWQSDSGGLIPETRAKVYLSPKLWYLR 430
+ ++ + A ++ ++ I E+ K+ L
Sbjct: 123 IFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGLH 182
Query: 431 LTVIQTQDLQPGSG 444
GSG
Sbjct: 183 SARDVPVVAILGSG 196
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 7e-05
Identities = 29/208 (13%), Positives = 57/208 (27%), Gaps = 8/208 (3%)
Query: 412 LIPETRAKVYLSPKLWYLRLTVIQTQDLQPGSGSEPKVRS-PELYVKGQLGAQLFKTGRT 470
+ P V + V++ + G+ + P YV+ + RT
Sbjct: 4 IDPYQHIIVEHQYS-HKFTVVVLRATKVTKGAFGDMLDTPDP--YVELFISTTPDSRKRT 60
Query: 471 SVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQMSTVERRIDDR 530
++ NP WNE F+ E L +T+ D + ++ ++
Sbjct: 61 RH---FNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEK 117
Query: 531 AEPKSRWFNLVGDETRPYAGRIHLRACLEGGYHVLDEAAHVTSDVRAAAKQLAKSPIGLL 590
E + + E + ++ K +G
Sbjct: 118 KEVPFIFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQR-KEHIRESMKKLLGPK 176
Query: 591 EVGIRGATNLLPVKTKDGTRGTTDAYVV 618
+ +PV G+ G A V
Sbjct: 177 NSEGLHSARDVPVVAILGSGGGFRAMVG 204
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 3e-07
Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 13/133 (9%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNP-QWDERLEFLVHDAE 66
LIV + L +G A V F GQ ++ + +DE + V +
Sbjct: 22 ALIVHLKTVSEL-----RGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSI 76
Query: 67 SMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEI 126
E+LEI ++N K +G ++ + ++ + + IK +
Sbjct: 77 -DRNEVLEIQIFNYSKVFSNK-LIGTFRMVLQKVVEENRVEVSDTLIDDNN--AIIKTSL 132
Query: 127 GLKVYYIDEDPPA 139
++V Y
Sbjct: 133 SMEVRYQ---AAD 142
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 14/123 (11%)
Query: 603 VKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPR-WNEQYTWDVYDPCT---VLTIGV 658
+KT RG D + + +R + + + ++E + W V VL I +
Sbjct: 27 LKTVSELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQI 86
Query: 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAV 718
F+ + ++ +G R+ L + S +L + A + + V
Sbjct: 87 FNYSKVFSNKL--------IGTFRMVLQKVVEENRVEVSDTL--IDDNNAIIKTSLSMEV 136
Query: 719 RFT 721
R+
Sbjct: 137 RYQ 139
|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 7e-07
Identities = 18/103 (17%), Positives = 32/103 (31%)
Query: 138 PAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEEN 197
P + P V + PE E +E P +E K + KPK + +
Sbjct: 38 TMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQ 97
Query: 198 TNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVT 240
PK P + + + + + +K +V
Sbjct: 98 EQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVA 140
|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 8e-07
Identities = 16/99 (16%), Positives = 24/99 (24%)
Query: 137 PPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEE 196
P EP +PE P E+ + K + K +E+P +
Sbjct: 44 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 103
Query: 197 NTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKD 235
+ A P A S A
Sbjct: 104 VKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASG 142
|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 3e-06
Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 2/105 (1%)
Query: 135 EDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPP 194
E P P + + PA PPE V E + E + K + P
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86
Query: 195 EENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATV 239
+ PKP + PVE + ++ P+
Sbjct: 87 KP--KPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTAT 129
|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 4e-06
Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 2/99 (2%)
Query: 137 PPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEK--KEEKPATVEGKKEEEKPKEEKPP 194
PP + + P E V EK + KP KK +E+PK + P
Sbjct: 47 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKP 106
Query: 195 EENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNA 233
E+ P E A ++T + P+ A
Sbjct: 107 VESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRA 145
|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 8e-05
Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 2/96 (2%)
Query: 135 EDPPAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPP 194
P V K + + K + KP KK +E+PK + P
Sbjct: 47 PPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKP 106
Query: 195 EENTNPKP--AEAPPAAAAVAATPVEVQNPPLAQSD 228
E+ P AP + AT + S
Sbjct: 107 VESRPASPFENTAPARLTSSTATAATSKPVTSVASG 142
|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 2/104 (1%)
Query: 139 APAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENT 198
E A A+P + AD P +AV + E E + E ++ P
Sbjct: 23 HQVIELPAPAQPISVTMVTPADLEPPQAV--QPPPEPVVEPEPEPEPIPEPPKEAPVVIE 80
Query: 199 NPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVTET 242
PKP P ++ +S S ++ A T
Sbjct: 81 KPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLT 124
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 3e-06
Identities = 71/532 (13%), Positives = 137/532 (25%), Gaps = 193/532 (36%)
Query: 485 NEDLVFVAAEPF---------EPFL--VVTVEDVTNGCSVGHA-----RI-------QMS 521
+D++ V + F + +++ E++ + A R+ Q
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 522 TVERRIDD-------------RAEPK-------------SRWFNLVGDETRPY-AGRIH- 553
V++ +++ + E + R +N Y R+
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQP 136
Query: 554 ---LRACL-----------EG----GYHVLDEAAHVTSDVRAAAKQLAKSPIGL--LEVG 593
LR L +G G + A V K K + L +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLS----YKVQCKMDFKIFWLNLK 190
Query: 594 --------IRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRT---RTILDRFNPR---- 638
+ LL + T + D K ++ R + +
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 639 ----WNEQYTWDVYDP-CTVL--TIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN 691
N + W+ ++ C +L T R K D +S +
Sbjct: 250 LLNVQNAK-AWNAFNLSCKILLTT----------RF---KQVTDFLSAATTTHISLDHHS 295
Query: 692 RVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCSSWLNLIQAYATPMLPR-MHYVRPL---- 746
++L +L+ LPR + P
Sbjct: 296 MTLTPDEVKSLL-------------------LKYLDC----RPQDLPREVLTTNPRRLSI 332
Query: 747 -------GPAQQDILRHTA----MRIVTARLARSEPPLGQEVVQ--FMLDTDTHV----- 788
G A D +H I+ + L EP +++ + H+
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 789 ---WSMRRSKANWFRVVGCLTRAATLARWLDGIRTWAHTPTTILVHVLLVAVVLSLRFRY 845
W K++ VV L + + + + +TI + + + + + L Y
Sbjct: 393 SLIWF-DVIKSDVMVVVNKLHKYSLVEKQPK--------ESTISIPSIYLELKVKLENEY 443
Query: 846 ---RQRVPQNMDPRLSYVDVVGPDELD-----------------EEFDGFPT 877
R V P+ D + P LD E F
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 2e-05
Identities = 106/709 (14%), Positives = 193/709 (27%), Gaps = 201/709 (28%)
Query: 34 VDFD-GQRRRTKTKFRDLNPQWDERL--EFLVHDAESMPTEIL---EI-NLYNDKKTGKR 86
+DF+ G+ + +++D+ +++ F D + MP IL EI ++ K
Sbjct: 7 MDFETGEH---QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 87 STFL-GKVKIAGSTFAK--VGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDE------DP 137
+ L + + V + Y + ++ + + YI++ D
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 138 PAPAPEAAAVAEPATKPEAAVADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEEN 197
A + +P K A+ + P K V ++G K
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNV----------LIDGVLGSGK---------- 163
Query: 198 TNPKPAEAPPAAAAVAATPVEVQNP------PLAQSDKP-----------SNAKDKATVT 240
A + V+ + L + P T
Sbjct: 164 -------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 241 ETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVR---VLKAKRAGNVSNGS----- 292
+ ++L H ++ R L+ P Y VL NV N
Sbjct: 217 SDHSSNIKLRIHSIQ----AELR---RLLKSKP--YENCLLVLL-----NVQNAKAWNAF 262
Query: 293 -LYAKLVIGTHSIKTKSQADKDWDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLG 351
L K+++ T + K D SL+ + E + L
Sbjct: 263 NLSCKILLTT---RFKQVTD-------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 352 TVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQ--ADEAFQEAWQSDS 409
DL P+ V +P S+ +E + LA W + + +S
Sbjct: 313 CRPQDL---PREVLTTNPRR---LSIIAESI---RDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 410 GGLIPETRAKVYLS----PK-----------LWYLRLTVIQTQDLQPGSGSEPKVRSPEL 454
L P K++ P +W+ + +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF-----------------DVIKSDVMV 406
Query: 455 YVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVG 514
V +L K S E + + + E L V +E+
Sbjct: 407 VVN-----KLHK----------YSLVEKQPKESTISIPSIYLE--LKVKLENEYA----L 445
Query: 515 HARIQMSTVER-RI------DDRAEPKSR--WFNLVGDETRPYAGRIHLRACLEGGYHVL 565
H I V+ I DD P +++ +G + HL+ +
Sbjct: 446 HRSI----VDHYNIPKTFDSDDLIPPYLDQYFYSHIG-----H----HLKNIEH--PERM 490
Query: 566 DEAAHVTSDVRAAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAY--VVAKYGP 623
V D R +++ N L Y + P
Sbjct: 491 TLFRMVFLDFRFLEQKIRHD--STAWNASGSILNTL---------QQLKFYKPYICDNDP 539
Query: 624 KWVRTRTILDRFNPRWNEQYTWDVYDPCT-VLTIGVFDNGRYKRDEAGK 671
K+ R + F P+ E + T +L I + +EA K
Sbjct: 540 KYERLVNAILDFLPKIEENL---ICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 9e-05
Identities = 65/488 (13%), Positives = 143/488 (29%), Gaps = 142/488 (29%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVI--VDFDGQRRRTKTK-------FRDLNPQWDERLE 59
+ ++VC + + K I ++ +T ++P W R +
Sbjct: 166 VALDVCLSYKVQCKMDFK------IFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 60 FL------VHDAESMPTEILEINLYN----------DKKTGKRSTFLGKVKI-----AGS 98
+H ++ +L+ Y + K F KI
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN--AFNLSCKILLTTRFKQ 276
Query: 99 TFAKVGSESSVYYPLEKRS-VFSQIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAA 157
+ + ++ + L+ S + + + L + Y+D P E P
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTTN-----PRRL 330
Query: 158 VADKPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPV 217
+ E ++ AT + K K + ++ +
Sbjct: 331 -------SIIAESIRDG-LATWDNWKHVNCDKLTT------------------IIESS-L 363
Query: 218 EVQNPPLAQS--DK----PSNAKDKATV-----TETKTQELRLNEHEL--RSL-TSDRSR 263
V P + D+ P +A + + ++ + ++L SL
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 264 SAYDLVDRMPFLYVRVLKAKRAGNVSNGSLYAKLV------------------------- 298
S + +Y+ LK K + L+ +V
Sbjct: 424 STISIPS----IYLE-LKVKLENEYA---LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 299 -IGTHSIKTKSQADKD--WDQVFAFDKEGLNSTSLEVSVWSEEKKENEECTENCLGTVLF 355
IG H +K ++ + VF D + E+K ++ N G++L
Sbjct: 476 HIGHH-LKNIEHPERMTLFRMVF-LD---FR--------FLEQKIRHDSTAWNASGSILN 522
Query: 356 DLQEVP---KRVPPDSPLAPQWYSLESEKLPGNDVMLAVWIGTQADEAFQEAWQSDSGGL 412
LQ++ + + P + + + LP + L I ++ + + A ++ +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL---ICSKYTDLLRIALMAEDEAI 579
Query: 413 IPETRAKV 420
E +V
Sbjct: 580 FEEAHKQV 587
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
+L+V V A L G ++ Y + Q T+T LNP+W+ +F + D
Sbjct: 388 RLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKD--- 444
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQI-KGEI 126
+ ++L + L+ D+ FLG+ +I AK+ +E P+ +R + ++ GE+
Sbjct: 445 LYQDVLCLTLF-DRDQFSPDDFLGRTEIP---VAKIRTEQESKGPMTRRLLLHEVPTGEV 500
Query: 127 GLKV 130
++
Sbjct: 501 WVRF 504
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 2e-05
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRR-RTKTKFRDL---NPQWDERLEFLV 62
L + + A+ L PK Y + D RT +K R W E EF
Sbjct: 11 NVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNN 65
Query: 63 HDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
A L + +K K + ++G V +
Sbjct: 66 LPAVRALRLHLYRDSDKKRKKDK-AGYVGLVTV 97
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 983 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.97 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.96 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.96 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.95 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.81 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.8 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.8 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.79 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.79 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.79 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.79 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.78 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.78 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.78 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.78 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.77 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.76 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.75 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.75 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.74 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.74 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.73 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.73 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.71 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.71 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.7 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.69 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.69 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.68 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.68 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.68 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.68 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.68 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.67 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.67 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.67 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.66 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.66 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.65 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.65 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.65 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.65 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.65 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.65 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.64 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.64 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.64 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.64 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.64 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.63 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.63 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.63 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.63 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.63 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.63 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.63 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.62 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.62 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.62 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.62 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.62 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.62 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.62 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.61 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.6 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.6 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.59 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.59 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.59 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.58 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.58 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.57 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.57 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.53 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.52 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.52 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.51 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.5 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.47 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.46 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.45 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.4 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.39 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.33 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.32 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.27 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.08 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.07 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.05 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.03 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.99 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.99 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.98 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 98.97 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 98.96 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.86 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.53 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.44 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 85.0 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 83.36 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=269.49 Aligned_cols=225 Identities=25% Similarity=0.292 Sum_probs=184.5
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEEC---CeEEEeeeeeeccCCCCCCCCcccceEEEEecCC--CCCcEE
Q 002002 427 WYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLG---AQLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEP--FEPFLV 501 (983)
Q Consensus 427 ~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~lg---~~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~--~~~~L~ 501 (983)
+.|+|+|++|++|+.+ |..+.+||||+++++ .++++|+++. +++||.|||.|.|.+..+ ....|.
T Consensus 19 ~~L~v~v~~a~~L~~~----d~~~~~dpyv~v~~~~~~~~~~~T~~~~------~~~nP~wne~f~f~v~~~~~~~~~l~ 88 (284)
T 2r83_A 19 NQLLVGIIQAAELPAL----DMGGTSDPYVKVFLLPDKKKKFETKVHR------KTLNPVFNEQFTFKVPYSELAGKTLV 88 (284)
T ss_dssp TEEEEEEEEEECCCCC----SSSSSCCEEEEEEEETCTTSCEECCCCC------SCSSCEEEEEEEECCCGGGCTTCEEE
T ss_pred CEEEEEEEEeeCCCCC----CCCCCCCeEEEEEEEcCCCceEeCCccc------CCCCCeeCceEEEEechHHhCcCEEE
Confidence 3599999999999987 788899999999995 3578898885 589999999999987643 357899
Q ss_pred EEEEeCc---CCceeEEEEEecccccccccCCCCCcceEEeccCCCC--CCcceEEEEEEEEeccccccccccccCCchh
Q 002002 502 VTVEDVT---NGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDET--RPYAGRIHLRACLEGGYHVLDEAAHVTSDVR 576 (983)
Q Consensus 502 i~V~D~d---~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~l~l~i~l~g~~~v~~~~~~~~~d~~ 576 (983)
|+|||++ ++++||++.++|.++... .....|++|....+ ....|.|.+.+...
T Consensus 89 ~~V~d~d~~~~~~~lG~~~i~l~~l~~~-----~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~----------------- 146 (284)
T 2r83_A 89 MAVYDFDRFSKHDIIGEFKVPMNTVDFG-----HVTEEWRDLQSAEKEEQEKLGDICFSLRYV----------------- 146 (284)
T ss_dssp EEEEECCSSSCCCEEEEEEEEGGGCCCS-----SCEEEEEECBCCSSCCCCCCCEEEEEEEEE-----------------
T ss_pred EEEEECCCCCCCceeEEEEEcchhcccC-----CcceeEEEeeccccccccccccEEEEEEec-----------------
Confidence 9999998 789999999999998753 35678999976532 23568887765322
Q ss_pred HHHHhhccCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C---EEEEeeeecCCCCCeeceEEEEEEecC-
Q 002002 577 AAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P---KWVRTRTILDRFNPRWNEQYTWDVYDP- 650 (983)
Q Consensus 577 ~~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~---~~~rT~~~~~t~nP~Wne~~~~~v~~~- 650 (983)
+..|.|.|.|++|+||+++ |. .|.+||||++++. + ...+|+++++++||.|||+|.|.+...
T Consensus 147 --------p~~~~l~v~v~~a~~L~~~---d~-~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 214 (284)
T 2r83_A 147 --------PTAGKLTVVILEAKNLKKM---DV-GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ 214 (284)
T ss_dssp --------TTTTEEEEEEEEEESCCCC---ST-TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTT
T ss_pred --------CcCCceEEEEEEeECCCCc---CC-CCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHH
Confidence 2356899999999999766 55 7899999999984 2 467999999999999999999998654
Q ss_pred --CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccc------------cCCCeEEEEEEeeec
Q 002002 651 --CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL------------DTNRVYLNSYSLTVL 703 (983)
Q Consensus 651 --~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~~~~L~~~ 703 (983)
...|.|+|||++.++ +|++||++.|+++.+ ..+....+||+|...
T Consensus 215 l~~~~l~i~V~d~d~~~--------~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 215 IQKVQVVVTVLDYDKIG--------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp GGGEEEEEEEEECCSSS--------CCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred hCceEEEEEEEeCCCCC--------CCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 237999999999988 788999999999863 234567889998754
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=264.00 Aligned_cols=232 Identities=22% Similarity=0.338 Sum_probs=183.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
..+.|.|+|++|++|+++|..|.+||||++.++. ++++|+++++++||.|||+|.|.+... ++....|.|.|||.+
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~-~~~~~~l~~~V~d~d 95 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS-ELAGKTLVMAVYDFD 95 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGG-GCTTCEEEEEEEECC
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechH-HhCcCEEEEEEEECC
Confidence 4579999999999999999999999999999953 688999999999999999999998653 344679999999988
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEceecCCc-ceeeeEEEEEEEEecCCCCCCCcccccccCCCCCCCcccCC
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVF-SQIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVAD 160 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~-s~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (983)
.++ ++++||++.+++..+. .+.....|++|.+.... ....|+|++.+.|.+
T Consensus 96 ~~~-~~~~lG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p-------------------------- 147 (284)
T 2r83_A 96 RFS-KHDIIGEFKVPMNTVD-FGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVP-------------------------- 147 (284)
T ss_dssp SSS-CCCEEEEEEEEGGGCC-CSSCEEEEEECBCCSSCCCCCCCEEEEEEEEET--------------------------
T ss_pred CCC-CCceeEEEEEcchhcc-cCCcceeEEEeeccccccccccccEEEEEEecC--------------------------
Confidence 876 8999999999999987 45677899999876432 234577776654420
Q ss_pred CCCCcccccccccCCcccccCcccccCCCCCCCCCCCCCCCCCCCCchhhccCCCCCccCCCCCCCCCCCCccccccccc
Q 002002 161 KPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVT 240 (983)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 240 (983)
T Consensus 148 -------------------------------------------------------------------------------- 147 (284)
T 2r83_A 148 -------------------------------------------------------------------------------- 147 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCccccccccCCCCCCcccccCCcCEEEEEEEEeecCCC---CCCCCcEEEEEEc--C---eeeeeeec--C
Q 002002 241 ETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAGN---VSNGSLYAKLVIG--T---HSIKTKSQ--A 310 (983)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~V~v~~a~~L~~---~~~~dPyv~v~~~--~---~~~kTk~~--~ 310 (983)
..+.|.|+|++|++|+. .|.+||||++++. + .+.+|+++ +
T Consensus 148 ------------------------------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t 197 (284)
T 2r83_A 148 ------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT 197 (284)
T ss_dssp ------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSC
T ss_pred ------------------------------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCC
Confidence 11569999999999973 4689999999995 3 35788888 7
Q ss_pred C-CccceEEEEeecC--CCCCeEEEEEEcCCcCCccccCCceeEEEEEeccccCCC--------CCCCCCCCCceEEccc
Q 002002 311 D-KDWDQVFAFDKEG--LNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKR--------VPPDSPLAPQWYSLES 379 (983)
Q Consensus 311 ~-P~Wne~f~f~~~~--~~~~~l~v~V~d~d~~~~d~~~d~~lG~~~i~l~~l~~~--------~~~~~~l~~~w~~L~~ 379 (983)
+ |+|||+|.|.+.. +....|.|+|||++. ++++++||.+.+++..+... ..+..+. .+||+|..
T Consensus 198 ~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~----~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~-~~W~~L~~ 272 (284)
T 2r83_A 198 LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK----IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPI-AQWHTLQV 272 (284)
T ss_dssp SSCEEEEEEEEECCTTTGGGEEEEEEEEECCS----SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCE-EEEEECBC
T ss_pred CCCEEceeEEEeCCHHHhCceEEEEEEEeCCC----CCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCch-heeeecCC
Confidence 7 9999999998753 345689999999985 67999999999999864221 1112222 48999876
Q ss_pred C
Q 002002 380 E 380 (983)
Q Consensus 380 ~ 380 (983)
.
T Consensus 273 ~ 273 (284)
T 2r83_A 273 E 273 (284)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=269.40 Aligned_cols=226 Identities=23% Similarity=0.287 Sum_probs=180.5
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEE---CCeEEEeeeeeeccCCCCCCCCcccceEEEEecCCC--CCcEE
Q 002002 427 WYLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQL---GAQLFKTGRTSVGLSPSSSANPTWNEDLVFVAAEPF--EPFLV 501 (983)
Q Consensus 427 ~~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~l---g~~~~rT~~~~~~~~~~~t~nP~wne~f~f~~~~~~--~~~L~ 501 (983)
+.|+|+|++|++|+.+ |..+.+||||++++ +.+++||++++ +++||.|||.|.|.+..+. ...|.
T Consensus 20 ~~L~v~v~~a~~L~~~----d~~g~~dPyv~v~l~~~~~~~~kT~v~~------~t~nP~wne~f~f~v~~~~l~~~~L~ 89 (296)
T 1dqv_A 20 DQLVVRILQALDLPAK----DSNGFSDPYVKIYLLPDRKKKFQTKVHR------KTLNPIFNETFQFSVPLAELAQRKLH 89 (296)
T ss_dssp CEEEEEEEEEECCCCC----STTSCCCEEEEEECTTSTTSCEECCCCC------SCSSCEEEEEEEEECCGGGGSSCCCE
T ss_pred CEEEEEEEEeECCCCc----CCCCCcCeEEEEEEEcCCCeeEeCCccC------CCCCCcEeeEEEEEecHHHhcCCEEE
Confidence 4699999999999987 88899999999999 66889999985 5899999999999986443 45899
Q ss_pred EEEEeCc---CCceeEEEEEe-cccccccccCCCCCcceEEeccCCCC-CCcceEEEEEEEEeccccccccccccCCchh
Q 002002 502 VTVEDVT---NGCSVGHARIQ-MSTVERRIDDRAEPKSRWFNLVGDET-RPYAGRIHLRACLEGGYHVLDEAAHVTSDVR 576 (983)
Q Consensus 502 i~V~D~d---~d~~lG~~~i~-L~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~l~l~i~l~g~~~v~~~~~~~~~d~~ 576 (983)
|+|||++ ++++||++.++ +..+... . .....|+.|....+ ....|.|.+.+...
T Consensus 90 ~~V~d~d~~~~~~~iG~~~i~~l~~~~~~--~--~~~~~w~~L~~~~~~~~~~G~i~vsl~y~----------------- 148 (296)
T 1dqv_A 90 FSVYDFDRFSRHDLIGQVVLDNLLELAEQ--P--PDRPLWRDILEGGSEKADLGELNFSLCYL----------------- 148 (296)
T ss_dssp EEEEECCSSSCCCEEEEEECCCTTGGGSS--C--SSCCCCEECBCCSSCCSCCCEEEEEEEEE-----------------
T ss_pred EEEEEcCCCCCCceEEEEEeccccccccC--C--ccceeeeccccccccccccceEEEEEEec-----------------
Confidence 9999988 78999999996 5444321 1 24568999975432 34468887765432
Q ss_pred HHHHhhccCCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC--C---EEEEeeeecCCCCCeeceEEEEEEecC-
Q 002002 577 AAAKQLAKSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG--P---KWVRTRTILDRFNPRWNEQYTWDVYDP- 650 (983)
Q Consensus 577 ~~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~--~---~~~rT~~~~~t~nP~Wne~~~~~v~~~- 650 (983)
+..|.|.|.|++|+||+++ |. .|.+||||++++. + ...||+++++++||.|||.|.|.+...
T Consensus 149 --------~~~~~l~v~v~~a~~L~~~---d~-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 216 (296)
T 1dqv_A 149 --------PTAGLLTVTIIKASNLKAM---DL-TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPES 216 (296)
T ss_dssp --------TTTTEEEEEEEEEESCCCC---SS-SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGG
T ss_pred --------cccceeEEEEEEeecCCcc---CC-CCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHH
Confidence 2457999999999999766 56 7889999999985 2 578999999999999999999998654
Q ss_pred --CCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccC-------------CCeEEEEEEeeec
Q 002002 651 --CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT-------------NRVYLNSYSLTVL 703 (983)
Q Consensus 651 --~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~-------------~~~~~~~~~L~~~ 703 (983)
...|.|+|||++..+ +|++||.+.|++..+.. ++...+|++|...
T Consensus 217 l~~~~L~i~V~d~d~~~--------~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~ 276 (296)
T 1dqv_A 217 VENVGLSIAVVDYDCIG--------HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE 276 (296)
T ss_dssp GGSCCCCCEEEECCSSS--------CCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred ccCcEEEEEEEeCCCCC--------CCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence 347999999999988 78899999999987642 3445566666543
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=260.99 Aligned_cols=215 Identities=19% Similarity=0.294 Sum_probs=174.0
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE---CCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF---DGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
..+.|.|+|++|++|+++|..|.+||||++.+ +.++++|+++++++||.|||+|.|.+... ++....|.|.|||.+
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~L~~~V~d~d 96 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA-ELAQRKLHFSVYDFD 96 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGG-GGSSCCCEEEEEECC
T ss_pred CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHH-HhcCCEEEEEEEEcC
Confidence 46789999999999999999999999999999 45889999999999999999999998653 334568999999988
Q ss_pred CCCCCCCccEEEEEE-CccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecCCCCCCCcccccccCCCCCCCcccCC
Q 002002 82 KTGKRSTFLGKVKIA-GSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDEDPPAPAPEAAAVAEPATKPEAAVAD 160 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~-l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (983)
.++ ++++||++.++ +..+...+.....|++|..........|+|.+.+.|.+
T Consensus 97 ~~~-~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~-------------------------- 149 (296)
T 1dqv_A 97 RFS-RHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLP-------------------------- 149 (296)
T ss_dssp SSS-CCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEET--------------------------
T ss_pred CCC-CCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecc--------------------------
Confidence 886 89999999996 54554334456779999765443345677777765430
Q ss_pred CCCCcccccccccCCcccccCcccccCCCCCCCCCCCCCCCCCCCCchhhccCCCCCccCCCCCCCCCCCCccccccccc
Q 002002 161 KPPEKAVGEEKKEEKPATVEGKKEEEKPKEEKPPEENTNPKPAEAPPAAAAVAATPVEVQNPPLAQSDKPSNAKDKATVT 240 (983)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 240 (983)
T Consensus 150 -------------------------------------------------------------------------------- 149 (296)
T 1dqv_A 150 -------------------------------------------------------------------------------- 149 (296)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCccccccccCCCCCCcccccCCcCEEEEEEEEeecCCC---CCCCCcEEEEEEc--C---eeeeeeec--C
Q 002002 241 ETKTQELRLNEHELRSLTSDRSRSAYDLVDRMPFLYVRVLKAKRAGN---VSNGSLYAKLVIG--T---HSIKTKSQ--A 310 (983)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~V~v~~a~~L~~---~~~~dPyv~v~~~--~---~~~kTk~~--~ 310 (983)
..+.|.|+|++|++|+. .|.+||||+++++ + .+.+|+++ +
T Consensus 150 ------------------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t 199 (296)
T 1dqv_A 150 ------------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNT 199 (296)
T ss_dssp ------------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSC
T ss_pred ------------------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCC
Confidence 01579999999999973 4678999999996 3 35789988 7
Q ss_pred C-CccceEEEEeecC--CCCCeEEEEEEcCCcCCccccCCceeEEEEEeccccC
Q 002002 311 D-KDWDQVFAFDKEG--LNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVP 361 (983)
Q Consensus 311 ~-P~Wne~f~f~~~~--~~~~~l~v~V~d~d~~~~d~~~d~~lG~~~i~l~~l~ 361 (983)
+ |+|||.|.|.+.. +....|.|+|||++. +++|++||.+.+++.++.
T Consensus 200 ~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~~~ 249 (296)
T 1dqv_A 200 LNPTYNEALVFDVAPESVENVGLSIAVVDYDC----IGHNEVIGVCRVGPEAAD 249 (296)
T ss_dssp SSCEEEECCCCCCCSGGGGSCCCCCEEEECCS----SSCCEEEEECCCSSCTTC
T ss_pred CCCeECceEEEEcCHHHccCcEEEEEEEeCCC----CCCCceEEEEEECCccCC
Confidence 7 9999999998753 335689999999985 678999999999998764
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=174.10 Aligned_cols=123 Identities=26% Similarity=0.438 Sum_probs=110.0
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCC
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRY 664 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~ 664 (983)
...|.|.|+|++|+||+++ |. .|++||||+++++++..||+++++++||.|||+|.|.+.++...|.|+|||++..
T Consensus 10 ~~~~~L~v~v~~a~~L~~~---d~-~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 10 KDVGILQVKVLKAADLLAA---DF-SGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 85 (133)
T ss_dssp CCSEEEEEEEEEEESCCCS---SS-SSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred CCceEEEEEEEeeECCCCC---CC-CCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence 5789999999999999765 55 7899999999999999999999999999999999999998888999999999998
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEe
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTC 722 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~ 722 (983)
+ +|++||++.|+|.++..+. .+||+|......+ +..|+|+++++|.+
T Consensus 86 ~--------~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 86 K--------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIY 132 (133)
T ss_dssp E--------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEE
T ss_pred C--------CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEEe
Confidence 7 6889999999999998876 6899998765443 45799999999863
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=168.19 Aligned_cols=128 Identities=23% Similarity=0.278 Sum_probs=109.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
..+.|.|+|++|++|+.++. |.+||||++++++++++|+++++++||+|||+|.|.+..+.......|.|+|||.+..+
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~ 83 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG 83 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS
T ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC
Confidence 35799999999999999998 99999999999999999999999999999999999997542223689999999988886
Q ss_pred CCCCccEEEEEECccceecCCeeeEEEE---ceecCCcceeeeEEEEEEEEecCC
Q 002002 85 KRSTFLGKVKIAGSTFAKVGSESSVYYP---LEKRSVFSQIKGEIGLKVYYIDED 136 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~---L~~~~~~s~~~G~l~l~i~~~~~~ 136 (983)
+|++||++.+++..+. .+.....|++ |.+... ....|+|++++.|.+.+
T Consensus 84 -~~~~lG~~~i~l~~l~-~~~~~~~w~~l~~l~~~~~-~~~~G~l~l~~~~~p~~ 135 (140)
T 2dmh_A 84 -QNKLIGTATVALKDLT-GDQSRSLPYKLISLLNEKG-QDTGATIDLVIGYDPPS 135 (140)
T ss_dssp -SCCCCEEEEEEGGGTC-SSSCEEEEEEEEEEECTTC-CEEEEEEEEEEEECCCB
T ss_pred -CCceEEEEEEEHHHhc-cCCCceeEEeeeeccCCCC-CCCCCEEEEEEEEECCC
Confidence 8999999999999987 4566778988 655433 24679999999998643
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=170.54 Aligned_cols=122 Identities=30% Similarity=0.559 Sum_probs=109.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC-
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT- 83 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~- 83 (983)
..+.|.|+|++|++|+++|..|.+||||++.+++++++|+++++++||.|||+|.|.+..+ ...|.|+|||.+..
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~----~~~l~~~v~d~d~~~ 90 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS----SDRIKVRVLDEDDDI 90 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST----TCEEEEEEEECCCSH
T ss_pred cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC----CCEEEEEEEECCCCc
Confidence 4689999999999999999999999999999999999999999999999999999999775 57899999998874
Q ss_pred ---------CCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 84 ---------GKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 84 ---------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
.++++|||++.+++..+. .....||+|.+++..+...|+|+|++.|.
T Consensus 91 ~~~~~~~~~~~~~~~lG~~~i~l~~l~---~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 91 KSRVKQRFKRESDDFLGQTIIEVRTLS---GEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHHHTTTSSCSSEEEEEEEEEGGGCC---SEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred cccccccccCCCCccEEEEEEEHHHCc---CCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 128999999999999984 46689999998877666889999999885
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.9e-19 Score=168.65 Aligned_cols=125 Identities=21% Similarity=0.290 Sum_probs=110.6
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcC-CCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCC
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKF-RDLNPQWDERLEFLVHDAESMPTEILEINLYNDKK 82 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~ 82 (983)
...+.|.|+|++|++|+.+|..|.+||||++++++++++|++++ +++||.|||+|.|.+... ...|.|+|||.+.
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~----~~~l~~~V~d~~~ 82 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG----TTELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS----CCEEEEEECCSSS
T ss_pred CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCC----CCEEEEEEEECCC
Confidence 45689999999999999999999999999999999999999998 899999999999999863 6899999998887
Q ss_pred CCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecCC
Q 002002 83 TGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDED 136 (983)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~ 136 (983)
++ +|++||++.+++..+...+.....||+|.+. ....|+|+|++.|.+..
T Consensus 83 ~~-~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~---~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 83 GT-EDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---EEYKGEIWVALSFKPSG 132 (136)
T ss_dssp CT-TTCCSEEEEEESHHHHHHSEEEEEEEEEEET---TEEEEEEEEEEEEEECC
T ss_pred CC-CCceEEEEEEEHHHhccCCCCCcEEEEeecC---CccCEEEEEEEEEEeCC
Confidence 76 8999999999999996456667899999832 35789999999998643
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=167.92 Aligned_cols=121 Identities=21% Similarity=0.346 Sum_probs=106.1
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCC-
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRY- 664 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~- 664 (983)
..|.|.|+|++|+||+++ |. .|++||||++.+++...+|+++++++||.|||+|.|.+..+...|.|+|||++..
T Consensus 15 ~~~~L~V~v~~a~~L~~~---d~-~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~ 90 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAK---DK-TGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDI 90 (148)
T ss_dssp CCEEEEEEEEEEESCCCC---ST-TSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSH
T ss_pred cccEEEEEEEeeeCCCCC---CC-CCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCc
Confidence 469999999999999765 55 7899999999999999999999999999999999999988888999999999985
Q ss_pred ----------CCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 665 ----------KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 665 ----------~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+ +|++||++.|+|.++. ....+||+|......+ +..|+|+|++.|.
T Consensus 91 ~~~~~~~~~~~--------~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~-~~~G~i~l~l~~e 146 (148)
T 3kwu_A 91 KSRVKQRFKRE--------SDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKS-AVSGAIRLHISVE 146 (148)
T ss_dssp HHHHHTTTSSC--------SSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTC-CCCCEEEEEEEEE
T ss_pred cccccccccCC--------CCccEEEEEEEHHHCc--CCCCEEEEcccCCCCC-CCceEEEEEEEEE
Confidence 4 6889999999999994 3458999998553333 3569999999986
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-19 Score=170.12 Aligned_cols=123 Identities=26% Similarity=0.496 Sum_probs=109.3
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT 83 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~ 83 (983)
...+.|.|+|++|++|+++|..|.+||||++.+++++++|+++++++||.|||+|.|.+... ...|.|+|||.+..
T Consensus 10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~----~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI----HDVLEVTVFDEDGD 85 (133)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT----TCEEEEEEEEEETT
T ss_pred CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC----CCEEEEEEEECCCC
Confidence 45689999999999999999999999999999999999999999999999999999999765 57899999998887
Q ss_pred CCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 84 GKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
+ ++++||++.+++..+.. + ...||+|.++.......|+|+|++.|..
T Consensus 86 ~-~~~~lG~~~i~l~~l~~-~--~~~w~~L~~~~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 86 K-PPDFLGKVAIPLLSIRD-G--QPNCYVLKNKDLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp E-EEEECCBCEEEGGGCCS-S--CCEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred C-CCCeeEEEEEEHHHccC-C--CceEEEeecCCCCCccceEEEEEEEEEe
Confidence 5 79999999999999863 2 3589999987655567899999998864
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=175.62 Aligned_cols=129 Identities=26% Similarity=0.394 Sum_probs=104.6
Q ss_pred CcCCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC------eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEE
Q 002002 2 AESCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG------QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEI 75 (983)
Q Consensus 2 a~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v 75 (983)
.....+.|.|+|++|++|+.++..|.+||||++.+++ ++++|+++++++||.|||+|.|.+... ...|.|
T Consensus 3 ~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~----~~~L~~ 78 (176)
T 3m7f_B 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ----RHRILF 78 (176)
T ss_dssp CCTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT----TCEEEE
T ss_pred CCCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC----CCEEEE
Confidence 4567799999999999999999999999999999975 678999999999999999999999754 578999
Q ss_pred EEEeCCCCCCCCCccEEEEEECccceecCCee-----eEEEEceecCCcceeeeEEEEEEEEecC
Q 002002 76 NLYNDKKTGKRSTFLGKVKIAGSTFAKVGSES-----SVYYPLEKRSVFSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 76 ~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~-----~~w~~L~~~~~~s~~~G~l~l~i~~~~~ 135 (983)
.|||.+.++ +++|||++.|+|..+....... ..||+|..+...++..|+|+|++.|.+.
T Consensus 79 ~V~d~d~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 79 EVFDENRLT-RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp EEEECC-----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred EEEECCCCC-CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 999988886 8999999999999988433221 2899999887766788999999999854
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=170.14 Aligned_cols=116 Identities=21% Similarity=0.295 Sum_probs=100.7
Q ss_pred CCcEEEEEEEEeeCCCCCCC----------CCCCCeEEEEEECCeE-EeeeCcCCCCCCeeeeEEEEEeeecCCCCCceE
Q 002002 5 CNRKLIVEVCNAKNLMPKDG----------QGTASAYVIVDFDGQR-RRTKTKFRDLNPQWDERLEFLVHDAESMPTEIL 73 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~----------~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L 73 (983)
..+.|+|+|++|++|+++|. .|++||||+|.+++++ .+|+++++|+||.|||+|.|.+.. ...|
T Consensus 27 ~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-----~~~L 101 (157)
T 2fk9_A 27 FNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-----GGHL 101 (157)
T ss_dssp EEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-----ECEE
T ss_pred CccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-----CCEE
Confidence 35789999999999999883 3789999999999854 799999999999999999999875 3689
Q ss_pred EEEEEeCCCCCCCCCccEEEEEECccceec---CCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 74 EINLYNDKKTGKRSTFLGKVKIAGSTFAKV---GSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 74 ~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
.|+|||++.++ +|+|||++.|++.++... +...+.||+|++ .|.|+|++.|.
T Consensus 102 ~~~V~D~d~~~-~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-------~G~i~l~l~~~ 156 (157)
T 2fk9_A 102 ELAVFHETPLG-YDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-------EGKVFVVITLT 156 (157)
T ss_dssp EEEEEECCSSS-SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-------SCEEEEEEEEC
T ss_pred EEEEEECCCCC-CCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-------CcEEEEEEEEE
Confidence 99999988876 899999999999998732 367889999975 49999999874
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=168.22 Aligned_cols=123 Identities=25% Similarity=0.331 Sum_probs=108.4
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeec-CCCCCeeceEEEEEEecCCCEEEEEEEeCCC
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTIL-DRFNPRWNEQYTWDVYDPCTVLTIGVFDNGR 663 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~-~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~ 663 (983)
.+.|.|.|+|++|++|+++ |. .|++||||++++++...||++++ +++||.|||+|.|.+.+....|.|+|||++.
T Consensus 7 ~~~~~L~v~v~~a~~L~~~---d~-~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~ 82 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDA---DF-LNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSC---CS-SCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred CCcEEEEEEEEeccCCCCc---cc-CCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCC
Confidence 4689999999999999765 55 78999999999999889999999 8999999999999999877899999999999
Q ss_pred CCCcCCCCCCCCceeEEEEEEcccc-cCCCeEEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 664 YKRDEAGKPGKDVRVGKIRVRLSTL-DTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 664 ~~~~~~~~~~~d~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
++ +|++||++.|+|.++ ..+.....||+|. . .+ +..|+|++++.|.+.
T Consensus 83 ~~--------~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~--~~-~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 83 GT--------EDDAVGEATIPLEPVFVEGSIPPTAYNVV-K--DE-EYKGEIWVALSFKPS 131 (136)
T ss_dssp CT--------TTCCSEEEEEESHHHHHHSEEEEEEEEEE-E--TT-EEEEEEEEEEEEEEC
T ss_pred CC--------CCceEEEEEEEHHHhccCCCCCcEEEEee-c--CC-ccCEEEEEEEEEEeC
Confidence 87 788999999999999 5566668899998 2 22 457999999999753
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=170.51 Aligned_cols=125 Identities=29% Similarity=0.439 Sum_probs=101.8
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC------eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEE
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG------QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINL 77 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V 77 (983)
...+.|.|+|++|++|+.+|..|.+||||++++.+ ..++|+++++++||.|||+|.|.+... ...|.|+|
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~l~~~V 92 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ----QHRLLFEV 92 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT----TCEEEEEE
T ss_pred CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC----CCEEEEEE
Confidence 45579999999999999999999999999999963 588999999999999999999999764 57899999
Q ss_pred EeCCCCCCCCCccEEEEEECccceecCCe-----eeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 78 YNDKKTGKRSTFLGKVKIAGSTFAKVGSE-----SSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 78 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~-----~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
||.+..+ ++++||++.+++.++...... ...||+|.++...+...|+|+|++.|.
T Consensus 93 ~d~d~~~-~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 93 FDENRLT-RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152 (153)
T ss_dssp EECCSSS-CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred EECCCCc-CCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence 9988876 899999999999998743321 259999988765556789999999986
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-18 Score=165.52 Aligned_cols=124 Identities=23% Similarity=0.327 Sum_probs=105.9
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecC----CCEEEEEEEeC
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDP----CTVLTIGVFDN 661 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~----~~~l~i~v~D~ 661 (983)
..|.|.|+|++|+||+.+ | .|++||||+++++++..||+++++++||+|||+|.|.+..+ ...|.|+|||+
T Consensus 5 ~~g~L~v~v~~a~~L~~~---~--~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~ 79 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKT---K--FGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF 79 (140)
T ss_dssp BCCEEEEEEEEEESCCCC---S--SSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred CCcEEEEEEEEeeCCCCC---C--CCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence 468999999999999776 3 37899999999999999999999999999999999999753 57999999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec-CCCCCccceEEEEEEEEEe
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL-LPGGAKKMGEIEIAVRFTC 722 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-~~~g~~~~G~l~l~~~f~~ 722 (983)
+..+ +|++||++.|+|.+|..+.....||+|... ...+.+..|+|++++.|.+
T Consensus 80 d~~~--------~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p 133 (140)
T 2dmh_A 80 ETIG--------QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133 (140)
T ss_dssp TCSS--------SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred CCCC--------CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence 9987 688999999999999988888899883322 2234345799999999963
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=169.37 Aligned_cols=119 Identities=22% Similarity=0.259 Sum_probs=101.8
Q ss_pred CCcEEEEEEEceeccccccccCC-------CCCCCCCcEEEEEECCEE-EEeeeecCCCCCeeceEEEEEEecCCCEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKD-------GTRGTTDAYVVAKYGPKW-VRTRTILDRFNPRWNEQYTWDVYDPCTVLTI 656 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d-------~~~g~sDpy~~~~~~~~~-~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i 656 (983)
...|.|+|+|++|++|++++... . .|.+||||++++++.. .||+++++|+||+|||+|.|.+.+ ...|.|
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~-~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~ 103 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKG-HQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLEL 103 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSS-CCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccC-CCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEE
Confidence 46899999999999998774110 1 3679999999998865 699999999999999999999976 458999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCC----CeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN----RVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+|||+|.++ +|++||++.|+|.++..+ .....||+|.. .|.|++.+.|.
T Consensus 104 ~V~D~d~~~--------~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--------~G~i~l~l~~~ 156 (157)
T 2fk9_A 104 AVFHETPLG--------YDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--------EGKVFVVITLT 156 (157)
T ss_dssp EEEECCSSS--------SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--------SCEEEEEEEEC
T ss_pred EEEECCCCC--------CCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--------CcEEEEEEEEE
Confidence 999999988 788999999999999754 67899999962 59999999884
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=168.03 Aligned_cols=124 Identities=24% Similarity=0.361 Sum_probs=101.6
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC------EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP------KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGV 658 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~------~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v 658 (983)
+..|.|.|+|++|+||+.+ |. .|++||||++++++ ...||+++++++||.|||+|.|.+......|.|+|
T Consensus 17 ~~~~~L~V~v~~a~~L~~~---d~-~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V 92 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKK---DI-LGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEV 92 (153)
T ss_dssp TTCEEEEEEEEEEESCC-----------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEE
T ss_pred CCccEEEEEEEEeeCCCCC---CC-CCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEE
Confidence 5679999999999999765 55 78999999999863 57899999999999999999999988778999999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCe------EEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV------YLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
||++..+ +|++||++.|+|.++..+.. ..+||+|......+ +..|+|++++.|.
T Consensus 93 ~d~d~~~--------~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 93 FDENRLT--------RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYL 152 (153)
T ss_dssp EECCSSS--------CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEEC
T ss_pred EECCCCc--------CCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEEEEEEe
Confidence 9999987 78899999999999976542 24899997654333 4579999999984
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.3e-18 Score=161.27 Aligned_cols=122 Identities=25% Similarity=0.362 Sum_probs=103.9
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC--eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG--QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT 83 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~ 83 (983)
...|.|+|++|++|+++|..|.+||||++.+++ ++++|+++++++||.|||+|.|.+... ..|.|+|||.+..
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-----~~l~~~v~d~d~~ 78 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-----DSITISVWNHKKI 78 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-----CCEEEEEEEGGGT
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-----CEEEEEEEECCCC
Confidence 468999999999999999999999999999975 899999999999999999999999764 3599999998877
Q ss_pred CC--CCCccEEEEEECccceecCCeeeEEEEceecC--CcceeeeEEEEEEEE
Q 002002 84 GK--RSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS--VFSQIKGEIGLKVYY 132 (983)
Q Consensus 84 ~~--~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~--~~s~~~G~l~l~i~~ 132 (983)
++ .|+|||++.+++..+........+|++|.+.. ......|+|++++.+
T Consensus 79 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 79 HKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp TSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 52 28999999999998854556667899998773 233468999999864
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=168.46 Aligned_cols=125 Identities=23% Similarity=0.342 Sum_probs=101.1
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC------EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEE
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP------KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGV 658 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~------~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v 658 (983)
...|.|.|+|++|++|+.+ |. .|++||||++.+++ ...+|+++++++||.|||.|.|.+......|.|+|
T Consensus 5 ~~~g~L~V~v~~a~~L~~~---d~-~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V 80 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKK---DI-LGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEV 80 (176)
T ss_dssp TTCEEEEEEEEEEESCC------C-CCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCc---CC-CCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEE
Confidence 4689999999999999765 55 78999999999875 67899999999999999999999987777999999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeE-E-----EEEEeeecCCCCCccceEEEEEEEEEe
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVY-L-----NSYSLTVLLPGGAKKMGEIEIAVRFTC 722 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~~~~L~~~~~~g~~~~G~l~l~~~f~~ 722 (983)
||++.++ +|++||++.|+|.++..+... . .||+|......+ +..|+|+|++.|.+
T Consensus 81 ~d~d~~~--------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~l~~~p 141 (176)
T 3m7f_B 81 FDENRLT--------RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLP 141 (176)
T ss_dssp EECC------------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEEEEEECC
T ss_pred EECCCCC--------CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCC-ccCEEEEEEEEEEe
Confidence 9999987 788999999999999876432 2 799998764444 45699999999963
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-18 Score=159.70 Aligned_cols=118 Identities=20% Similarity=0.228 Sum_probs=99.6
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC---EEEEeeeecCCCCCeeceEEEEEEec-CCCEEEEEEEeCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWDVYD-PCTVLTIGVFDNG 662 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~---~~~rT~~~~~t~nP~Wne~~~~~v~~-~~~~l~i~v~D~d 662 (983)
.|.|.|+|++|+||++++..|. .|++||||++++++ ...||+++++++||.|||+|.|.+.. ....|.|+|||++
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~-~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d 80 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDM-LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHH-HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred CcEEEEEEEeeeCCCCCCcccc-CCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECC
Confidence 5899999999999987533355 68999999999985 78999999999999999999999954 4568999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEE
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f 720 (983)
..+ |++||++.|+|.++..+.....||+|.. ...|.|++.+..
T Consensus 81 ~~~---------~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le~ 123 (126)
T 1rlw_A 81 YVM---------DETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEV 123 (126)
T ss_dssp SSC---------CEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEEC
T ss_pred CCC---------CceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEEe
Confidence 754 6799999999999999998899999863 234777776643
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=160.36 Aligned_cols=116 Identities=21% Similarity=0.373 Sum_probs=100.0
Q ss_pred CcEEEEEEEEeeCCCCCCCCCC-----------CCeEEEEEECCeE-EeeeCcCCCCCCeeeeEEEEEeeecCCCCCceE
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGT-----------ASAYVIVDFDGQR-RRTKTKFRDLNPQWDERLEFLVHDAESMPTEIL 73 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~-----------~dPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L 73 (983)
.+.|.|+|++|++|+++|..|. +||||++.++++. .+|+++++|+||.|||+|.|.+... ..|
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-----~~L 79 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-----RKI 79 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-----CEE
T ss_pred ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-----CEE
Confidence 5789999999999999875443 9999999998854 7999999999999999999998763 789
Q ss_pred EEEEEeCCCCCCCCCccEEEEEECccceecC-CeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 74 EINLYNDKKTGKRSTFLGKVKIAGSTFAKVG-SESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 74 ~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
.|+|||.+..+ +|++||++.+++.++...+ ...+.|++|++ +|+|+|++.|.+
T Consensus 80 ~~~V~d~d~~~-~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~i~l~l~~~~ 133 (136)
T 1gmi_A 80 ELAVFHDAPIG-YDDFVANCTIQFEELLQNGSRHFEDWIDLEP-------EGKVYVIIDLSG 133 (136)
T ss_dssp EEEEEECCSSS-SCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-------SCEEEEEEEEEE
T ss_pred EEEEEeCCCCC-CCCEEEEEEEEHHHhcccCCCCccEEEEcCC-------CeEEEEEEEEEe
Confidence 99999988876 8999999999999987432 34589999975 499999999874
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=159.57 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=99.3
Q ss_pred CcEEEEEEEceeccccccccCCC-------CCCCCCcEEEEEECCEE-EEeeeecCCCCCeeceEEEEEEecCCCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDG-------TRGTTDAYVVAKYGPKW-VRTRTILDRFNPRWNEQYTWDVYDPCTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~-------~~g~sDpy~~~~~~~~~-~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~ 657 (983)
..|.|+|+|++|+||++++.... ..+.+||||++.+++.. .+|+++++|+||.|||+|+|.+.+. ..|.|+
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~ 82 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA 82 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEE
Confidence 35899999999999987641100 01239999999998754 6999999999999999999999876 899999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCC--CeEEEEEEeeecCCCCCccceEEEEEEEEEe
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN--RVYLNSYSLTVLLPGGAKKMGEIEIAVRFTC 722 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~ 722 (983)
|||+|..+ +|++||++.|+|.++..+ .....|++|. +.|+|++.+.|..
T Consensus 83 V~d~d~~~--------~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~i~l~l~~~~ 133 (136)
T 1gmi_A 83 VFHDAPIG--------YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSG 133 (136)
T ss_dssp EEECCSSS--------SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEE
T ss_pred EEeCCCCC--------CCCEEEEEEEEHHHhcccCCCCccEEEEcC--------CCeEEEEEEEEEe
Confidence 99999987 788999999999999863 3457899875 2599999999964
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-17 Score=163.19 Aligned_cols=125 Identities=20% Similarity=0.251 Sum_probs=104.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
..+.|.|+|++|++|+.++..+.+||||+|.+++++++|+++++++||+|||+|.|.+. + ...|.|+|||.+.++
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~----~~~L~~~V~D~d~~~ 108 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-P----VSKLHFRVWSHQTLK 108 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-T----TCEEEEEEEECCSSS
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-C----CCEEEEEEEECCCCC
Confidence 56889999999999995444555999999999999999999999999999999999984 2 689999999988886
Q ss_pred CCCCccEEEEEECccceecC----CeeeEEEEceecCCcceeeeEEEEEEEEecC
Q 002002 85 KRSTFLGKVKIAGSTFAKVG----SESSVYYPLEKRSVFSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~----~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~ 135 (983)
+|+|||++.+++.++.... .....|++|.+........|+|.+.+.|...
T Consensus 109 -~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 109 -SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp -CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred -CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence 8999999999999987321 1236799999875444678999999998854
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-17 Score=152.98 Aligned_cols=115 Identities=24% Similarity=0.395 Sum_probs=98.9
Q ss_pred CcEEEEEEEEeeCCCCC---CCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 6 NRKLIVEVCNAKNLMPK---DGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~---d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
.+.|.|+|++|++|+++ |..|.+||||++.+++ ++++|+++++++||.|||+|.|.+..+. ...|.|+|||
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~l~i~V~d 78 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ---ENVLEITLMD 78 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS---CCEEEEEEEE
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCC---CCEEEEEEEE
Confidence 57899999999999984 6678999999999985 7899999999999999999999996543 6789999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEE
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVY 131 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~ 131 (983)
.+.. ++++||++.+++..+. .+.....|++|.+. ..|+|++++.
T Consensus 79 ~d~~--~~~~iG~~~i~l~~l~-~~~~~~~~~~L~~~-----~~g~i~~~le 122 (126)
T 1rlw_A 79 ANYV--MDETLGTATFTVSSMK-VGEKKEVPFIFNQV-----TEMVLEMSLE 122 (126)
T ss_dssp CCSS--CCEEEEEEEEEGGGSC-TTCEEEEEEEETTT-----EEEEEEEEEE
T ss_pred CCCC--CCceeEEEEEEHHHcc-CCCcEEEEEEcCCC-----ceEEEEEEEE
Confidence 8766 5889999999999987 67788899999863 3477777663
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.7e-17 Score=154.12 Aligned_cols=124 Identities=18% Similarity=0.252 Sum_probs=98.5
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC--EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP--KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRY 664 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~--~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~ 664 (983)
...|+|+|++|++|+++ |. .|++||||++++++ ...+|+++++++||.|||+|.|.+.++. .|.|+|||++..
T Consensus 4 ~~~L~V~v~~a~~L~~~---d~-~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~ 78 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKK---DF-FRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKI 78 (132)
T ss_dssp EEEEEEEEEEEESCCCC---ST-TCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGT
T ss_pred eEEEEEEEEEeECCCCC---CC-CCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCC
Confidence 45799999999999765 56 88999999999974 7899999999999999999999998765 499999999987
Q ss_pred CCcCCCCCCCCceeEEEEEEccccc-CCCeEEEEEEeeecCCCC-CccceEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLD-TNRVYLNSYSLTVLLPGG-AKKMGEIEIAVRF 720 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g-~~~~G~l~l~~~f 720 (983)
+.. ..|++||.+.|++..|. .+.....|++|....+.+ .+..|+|++++.+
T Consensus 79 ~~~-----~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 79 HKK-----QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp TSS-----TTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCC-----CCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 610 02789999999999882 222224678887653322 2447999998864
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=159.33 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=102.0
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCC
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRY 664 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~ 664 (983)
...+.|.|+|++|++|+..+ + .+++||||++++++...||+++++++||+|||+|.|.+. +...|.|+|||+|.+
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~--~--~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~ 107 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKK--N--WFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTL 107 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC------CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSS
T ss_pred CCceEEEEEEEEeECCCCcc--c--CCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCC
Confidence 35789999999999997322 3 455999999999999999999999999999999999984 578999999999998
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCC---C--eEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTN---R--VYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~---~--~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+ +|++||++.|+|.++..+ . ....|++|.... .+.+..|+|.+.+.|.
T Consensus 108 ~--------~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~-~~~~~~G~L~v~l~~l 160 (173)
T 2nq3_A 108 K--------SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK-EPTETIGDLSICLDGL 160 (173)
T ss_dssp S--------CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESS-CTTSEEEEEEEEEESE
T ss_pred C--------CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCC-CCCcccEEEEEEEeee
Confidence 7 788999999999998642 1 235699998763 2335679999998875
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=153.25 Aligned_cols=108 Identities=20% Similarity=0.395 Sum_probs=92.1
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE-----CCeEEeeeCcCCCCCCeeeeEEEEE-eeecCCCCCceEEEEEEe
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEFL-VHDAESMPTEILEINLYN 79 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~WnE~f~f~-v~~~~~l~~~~L~v~V~~ 79 (983)
.+.|.|+|++|++|+. +..|.+||||++.+ ...+++|+++++++||+|||+|.|. +... ++....|.|+|||
T Consensus 19 ~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~-~l~~~~L~~~V~d 96 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE-TLRQRELQLSVLS 96 (134)
T ss_dssp TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHH-HHTTCEEEEEEEE
T ss_pred CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHH-HhCcCEEEEEEEE
Confidence 4789999999999997 77889999999999 3478999999999999999999999 6542 2235799999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
.+..+ ++++||++.+++..+. .+.....||+|.+.+
T Consensus 97 ~d~~~-~~~~lG~~~i~l~~l~-~~~~~~~W~~L~~~~ 132 (134)
T 2b3r_A 97 AESLR-ENFFLGGITLPLKDFN-LSKETVKWYQLTAAT 132 (134)
T ss_dssp CCSSS-CCEEEEEEEEEGGGSC-TTSCEEEEEECBC--
T ss_pred CCCCC-CCcEEEEEEEEhhhcc-CCCCcceeEECCCcc
Confidence 88876 7899999999999987 456778999998763
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=156.43 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=90.9
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC------EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP------KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTI 656 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~------~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i 656 (983)
..|.|.|.|++|+||+++ |. .|++||||++++.+ ...||+++++|+||+|||+|.|.+... ...|.|
T Consensus 41 ~~~~L~V~Vi~a~~L~~~---d~-~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~ 116 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSAL---LQ-QQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRV 116 (155)
T ss_dssp TTTEEEEEEEEEECGGGT---CC-SCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEE
T ss_pred CCCEEEEEEEEccCcCCc---cc-CCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEE
Confidence 456899999999999876 56 88999999999864 278999999999999999999998642 458999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEccccc-CCCeEEEEEEee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD-TNRVYLNSYSLT 701 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~ 701 (983)
+|||+|..+ +|++||++.|+|.++. .+....+||+|.
T Consensus 117 ~V~d~d~~~--------~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 117 DVCTTDRSH--------LEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEEECTTS--------CEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EEEECCCCC--------CCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 999999988 7889999999999996 466778999985
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=154.88 Aligned_cols=105 Identities=30% Similarity=0.371 Sum_probs=92.9
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIGVF 659 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~v~ 659 (983)
..+.|.|+|++|+||+.+ |. .|.+||||++++. ....||+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 40 ~~~~L~V~v~~a~~L~~~---d~-~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~ 115 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPAL---DM-GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVY 115 (152)
T ss_dssp TTTEEEEEEEEEESCCCC---ST-TSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCc---cC-CCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEE
Confidence 346899999999999765 55 7899999999993 468899999999999999999999864 2568999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
|++.++ +|++||++.|+|.++..+....+||+|..
T Consensus 116 d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 116 DFDRFS--------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp ECCSSS--------CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred ECCCCC--------CCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 999987 78899999999999988888899999974
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.9e-17 Score=155.25 Aligned_cols=112 Identities=23% Similarity=0.349 Sum_probs=96.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC---CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD---GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
..+.|.|+|++|++|+.+|..|.+||||++.+. .++++|+++++++||.|||+|.|.+...+.+....|.|+|||.+
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d 103 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD 103 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECC
Confidence 457899999999999999999999999999994 37899999999999999999999864322233678999999988
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEceecCC
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSV 118 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~ 118 (983)
.++ ++++||++.+++..+. .+.....||+|.+.+.
T Consensus 104 ~~~-~~~~iG~~~i~l~~l~-~~~~~~~W~~L~~~~~ 138 (141)
T 2d8k_A 104 RFS-RNDPIGEVSIPLNKVD-LTQMQTFWKDLKPSGP 138 (141)
T ss_dssp SSS-SCEEEEEEEEETTTSC-TTSCEEEEECCEECCC
T ss_pred CCC-CCcEEEEEEEEhhhhc-CCCCccEEEECcCCCC
Confidence 876 8999999999999987 4557889999998754
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=150.60 Aligned_cols=106 Identities=23% Similarity=0.348 Sum_probs=93.0
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEEEec----CCCEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWDVYD----PCTVLTIGV 658 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~v~~----~~~~l~i~v 658 (983)
..+.|.|+|++|+||+.+ |. .|++||||++++. ....||+++++++||.|||+|.|.+.. ....|.|+|
T Consensus 24 ~~~~L~v~v~~a~~L~~~---d~-~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V 99 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAK---DF-SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQV 99 (141)
T ss_dssp SSCCEEEEEEEEESCCCC---SS-SSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEE
T ss_pred CCCEEEEEEEEeECCCCC---CC-CCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEE
Confidence 356899999999999765 55 7899999999994 368899999999999999999998632 246899999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
||++.++ +|++||++.|+|.++..+.....||+|...
T Consensus 100 ~d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 100 LDYDRFS--------RNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp EECCSSS--------SCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred EECCCCC--------CCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 9999987 788999999999999988888999999865
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=151.53 Aligned_cols=107 Identities=28% Similarity=0.497 Sum_probs=88.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE-----CCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|++++..|.+||||++.+ +..+++|+++++++||.|||+|.|.+.....+....|.|+|||
T Consensus 16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d 95 (129)
T 2bwq_A 16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD 95 (129)
T ss_dssp TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEE
Confidence 45789999999999999999999999999999 3479999999999999999999999644333346799999999
Q ss_pred CCCCCCC--CCccEEEEEECccceecCCeeeEEEEce
Q 002002 80 DKKTGKR--STFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 80 ~~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
.+..+ + +++||++.+++.++...+ ...||+|+
T Consensus 96 ~d~~~-~~~~~~lG~~~i~l~~l~~~~--~~~W~~Lq 129 (129)
T 2bwq_A 96 QARVR-EEESEFLGEILIELETALLDD--EPHWYKLQ 129 (129)
T ss_dssp C--------CEEEEEEEEEGGGCCCSS--CEEEEECC
T ss_pred CCcCc-CcCCceeEEEEEEccccCCCc--CCccEECc
Confidence 88875 5 899999999999987433 78999985
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-17 Score=159.76 Aligned_cols=108 Identities=15% Similarity=0.151 Sum_probs=94.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC------eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG------QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
..+.|.|+|++|+||+++|..|.+||||++.+.. .+++|+++++|+||+|||+|.|.+... .+....|.|+||
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~-~l~~~~L~~~V~ 119 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYP-ALHQKTLRVDVC 119 (155)
T ss_dssp TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHH-HHHHCEEEEEEE
T ss_pred CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHH-HhCcCEEEEEEE
Confidence 4578999999999999999999999999999954 379999999999999999999998652 223568999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
|.+..+ ++++||++.+++.++...+.....||+|.
T Consensus 120 d~d~~~-~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 120 TTDRSH-LEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EECTTS-CEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred ECCCCC-CCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 998886 89999999999999864456788999986
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=156.34 Aligned_cols=108 Identities=16% Similarity=0.312 Sum_probs=92.6
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..|.|.|+|++|+||++++ +. .|++||||++.+++ ...+|+++++|+||.|||+|.|.+... ...|.|+
T Consensus 21 ~~~~L~V~v~~a~~L~~~d--~~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~ 97 (148)
T 3fdw_A 21 QTQSLVVHVKECHQLAYAD--EA-KKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFS 97 (148)
T ss_dssp TTTEEEEEEEEEESCCCSB--TT-TTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEE
T ss_pred CCCEEEEEEEEecCCCCcc--cC-CCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEE
Confidence 4578999999999997763 23 78999999999862 488999999999999999999998653 3479999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecC
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLL 704 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 704 (983)
|||+|..+ +|++||++.|+|.++..+.....||+|..+.
T Consensus 98 V~d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 136 (148)
T 3fdw_A 98 VWHHGRFG--------RNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136 (148)
T ss_dssp EEEECGGG--------CEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred EEECCCCc--------CCcEEEEEEEEcccccccCCccceEECcCcc
Confidence 99999987 7889999999999998776678999998653
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=152.85 Aligned_cols=105 Identities=30% Similarity=0.388 Sum_probs=92.7
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEE---CCEEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY---GPKWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVF 659 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~---~~~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~ 659 (983)
..|.|.|+|++|++|+.+ |. .|++||||++++ +....+|+++++++||.|||+|.|.+... ...|.|+||
T Consensus 32 ~~~~L~v~v~~a~~L~~~---d~-~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~ 107 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPAL---DM-GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVY 107 (143)
T ss_dssp TTTEEEEEEEEEECCCCB---GG-GBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCC---CC-CCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEE
Confidence 457899999999999765 45 788999999999 44689999999999999999999998643 369999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
|++.++ +|++||++.|+|.++..+....+||+|..
T Consensus 108 d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 108 DFDRFS--------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp ECCSSS--------CCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred eCCCCC--------CCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 999987 78899999999999999988899999863
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-16 Score=148.88 Aligned_cols=103 Identities=23% Similarity=0.360 Sum_probs=84.5
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEE-----CCEEEEeeeecCCCCCeeceEEEEEEec----CCCEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY-----GPKWVRTRTILDRFNPRWNEQYTWDVYD----PCTVLTI 656 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~-----~~~~~rT~~~~~t~nP~Wne~~~~~v~~----~~~~l~i 656 (983)
..|.|.|+|++|+||+++ |. .|++||||++++ +....||+++++++||.|||+|.|.+.. ....|.|
T Consensus 16 ~~~~L~v~v~~a~~L~~~---d~-~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~ 91 (129)
T 2bwq_A 16 VGHQLIVTILGAKDLPSR---ED-GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEI 91 (129)
T ss_dssp TTTEEEEEEEEEESCCCC---TT-SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEE
T ss_pred CCCEEEEEEEEeeCCCCC---CC-CCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEE
Confidence 346899999999999765 55 789999999998 3578999999999999999999999632 2459999
Q ss_pred EEEeCCCCCCcCCCCCCC--CceeEEEEEEcccccCCCeEEEEEEee
Q 002002 657 GVFDNGRYKRDEAGKPGK--DVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
+|||++..+ + |++||++.|+|.++.... ..+||+|.
T Consensus 92 ~V~d~d~~~--------~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 92 TLWDQARVR--------EEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp EEEEC---------------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred EEEECCcCc--------CcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 999999887 5 889999999999987644 68999873
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-16 Score=148.88 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=90.9
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEE-----CCEEEEeeeecCCCCCeeceEEEEE-Eec---CCCEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY-----GPKWVRTRTILDRFNPRWNEQYTWD-VYD---PCTVLTIG 657 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~-----~~~~~rT~~~~~t~nP~Wne~~~~~-v~~---~~~~l~i~ 657 (983)
.|.|.|+|++|+||+. +. .|.+||||++++ +....||+++++|+||+|||+|.|. +.. ....|.|+
T Consensus 19 ~~~L~V~V~~a~~L~~----~~-~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~ 93 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVT----ED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLS 93 (134)
T ss_dssp TTEEEEEEEEEECCCC----TT-SCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEE
T ss_pred CCEEEEEEEEeeCCCC----CC-CCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEE
Confidence 4689999999999974 34 789999999998 3468899999999999999999999 753 34699999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
|||++..+ +|++||++.|+|.++..+.....||+|...
T Consensus 94 V~d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 131 (134)
T 2b3r_A 94 VLSAESLR--------ENFFLGGITLPLKDFNLSKETVKWYQLTAA 131 (134)
T ss_dssp EEECCSSS--------CCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred EEECCCCC--------CCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence 99999987 788999999999999988888999999753
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=154.91 Aligned_cols=112 Identities=22% Similarity=0.403 Sum_probs=94.5
Q ss_pred CCcEEEEEEEEeeCCCCCC-CCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKD-GQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
..+.|.|+|++|++|++++ ..|.+||||++.+. ..+++|+++++++||.|||+|.|.+... .+....|.|+||
T Consensus 21 ~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~~~L~~~V~ 99 (148)
T 3fdw_A 21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPES-LLAQRTLQFSVW 99 (148)
T ss_dssp TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCST-TGGGCEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChh-HhCceEEEEEEE
Confidence 4578999999999999988 57899999999995 2589999999999999999999998663 334567999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCc
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVF 119 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~ 119 (983)
|.+.++ ++++||++.+++..+. .+.....||+|.+++..
T Consensus 100 d~d~~~-~~~~iG~~~i~l~~l~-~~~~~~~W~~L~~~~~~ 138 (148)
T 3fdw_A 100 HHGRFG-RNTFLGEAEIQMDSWK-LDKKLDHCLPLHGKISA 138 (148)
T ss_dssp EECGGG-CEEEEEEEEEEHHHHH-HHCCSEEEEECBCC---
T ss_pred ECCCCc-CCcEEEEEEEEccccc-ccCCccceEECcCcccc
Confidence 988876 8999999999999987 34567799999988644
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=152.72 Aligned_cols=105 Identities=21% Similarity=0.258 Sum_probs=91.1
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeeceEEEEEE--ecCCCEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-----PKWVRTRTILDRFNPRWNEQYTWDV--YDPCTVLTIGV 658 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-----~~~~rT~~~~~t~nP~Wne~~~~~v--~~~~~~l~i~v 658 (983)
..|.|.|+|++|+||+++ | .|.+||||++.+. ....+|+++++++||.|||+|.|.+ .+....|.|+|
T Consensus 25 ~~~~L~V~v~~a~~L~~~---d--~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V 99 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISK---Q--PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTV 99 (153)
T ss_dssp SSSEEEEEEEEEESCCCC---S--SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCC---C--CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEE
Confidence 457899999999999876 3 5789999999983 3578999999999999999999999 45556899999
Q ss_pred EeCCCCCCcCCCCCCC-CceeEEEEEEcccccC-CCeEEEEEEeeec
Q 002002 659 FDNGRYKRDEAGKPGK-DVRVGKIRVRLSTLDT-NRVYLNSYSLTVL 703 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~ 703 (983)
||++..+ + |++||++.|+|.+|.. +.....||+|...
T Consensus 100 ~d~d~~~--------~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 100 WNRASQS--------RQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp EECCSSG--------GGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred EeCCCCC--------CCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 9999987 4 8899999999999985 7788999999865
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-16 Score=152.51 Aligned_cols=109 Identities=24% Similarity=0.379 Sum_probs=94.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE---CCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF---DGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
..+.|.|+|++|++|+.+|..|.+||||++.+ +.++++|+++++++||.|||+|.|.+... ++....|.|+|||.+
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~L~i~V~d~d 118 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS-ELGGKTLVMAVYDFD 118 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHH-HHTTCEEEEEEEECC
T ss_pred CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHH-HcCCCEEEEEEEECC
Confidence 45789999999999999999999999999999 34789999999999999999999988642 223578999999988
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.++ ++++||++.+++..+. .+.....||+|.+.
T Consensus 119 ~~~-~~~~iG~~~i~l~~l~-~~~~~~~W~~L~~~ 151 (152)
T 1rsy_A 119 RFS-KHDIIGEFKVPMNTVD-FGHVTEEWRDLQSA 151 (152)
T ss_dssp SSS-CCEEEEEEEEEGGGCC-CSSCEEEEEECBCC
T ss_pred CCC-CCcEEEEEEEEchhcc-CCCCcceEEECCCC
Confidence 876 8999999999999986 45678899999753
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-16 Score=151.92 Aligned_cols=108 Identities=24% Similarity=0.385 Sum_probs=94.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE---CCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF---DGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
..+.|.|+|++|++|+.++..|.+||||++.+ +.++++|+++++++||.|||+|.|.+... .+....|.|+|||.+
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~L~i~V~d~d 110 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS-ELGGKTLVMAVYDFD 110 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHH-HHTTCEEEEEEEECC
T ss_pred CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHh-hcCCCEEEEEEEeCC
Confidence 46789999999999999998899999999999 44789999999999999999999998653 223578999999988
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEcee
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEK 115 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 115 (983)
.++ ++++||++.+++..+. .+.....||+|++
T Consensus 111 ~~~-~~~~iG~~~i~l~~l~-~~~~~~~W~~L~~ 142 (143)
T 3f04_A 111 RFS-KHDIIGEFKVPMNTVD-FGHVTEEWRDLQS 142 (143)
T ss_dssp SSS-CCEEEEEEEEEGGGCC-TTSCEEEEEECBC
T ss_pred CCC-CCceEEEEEEEHHHcc-CCCCcceEEECcC
Confidence 886 8999999999999987 5667889999975
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.3e-16 Score=148.12 Aligned_cols=111 Identities=17% Similarity=0.265 Sum_probs=94.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCC-CCCCeEEEEEEC---CeEEeeeCcCCCCCCeeeeEEEEE-eeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQ-GTASAYVIVDFD---GQRRRTKTKFRDLNPQWDERLEFL-VHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~-v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|+++|.. |.+||||++.+. .++++|+++++++||+|||+|.|. +.. ..+....|.|+|||
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~-~~~~~~~l~i~V~d 98 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPY-TQIQELALHFTILS 98 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCS-TTGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCH-HHhccCEEEEEEEE
Confidence 357899999999999999985 899999999995 379999999999999999999996 543 33446799999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
.+.++ ++++||++.+++..+.........|++|.++.
T Consensus 99 ~d~~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~ 135 (138)
T 1ugk_A 99 FDRFS-RDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135 (138)
T ss_dssp ECSSC-CCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred CCCCC-CCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence 88876 89999999999999975445556789998764
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=147.51 Aligned_cols=105 Identities=21% Similarity=0.330 Sum_probs=87.4
Q ss_pred cEEEEEEEceeccccccccCCCCC-CCCCcEEEEEECC---EEEEeeeecCCCCCeeceEEEEE-Eec---CCCEEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTR-GTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWD-VYD---PCTVLTIGV 658 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~-g~sDpy~~~~~~~---~~~rT~~~~~t~nP~Wne~~~~~-v~~---~~~~l~i~v 658 (983)
.|.|.|+|++|+||+++ |. . |++||||++++.+ ...||+++++++||+|||+|.|. +.. ....|.|+|
T Consensus 21 ~~~L~v~v~~a~~L~~~---d~-~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V 96 (138)
T 1ugk_A 21 RKAFVVNIKEARGLPAM---DE-QSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTI 96 (138)
T ss_dssp GTEEEEEEEEEESCCCC---BT-TTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEE
T ss_pred CCEEEEEEEEeeCCCCC---CC-CCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEE
Confidence 46899999999999776 44 4 8899999999953 78999999999999999999996 543 235899999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCe-EEEEEEeeec
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV-YLNSYSLTVL 703 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~ 703 (983)
||++.++ +|++||++.|+|.++..+.. ...|++|...
T Consensus 97 ~d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 134 (138)
T 1ugk_A 97 LSFDRFS--------RDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp EEECSSC--------CCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred EECCCCC--------CCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence 9999987 68899999999999976543 3456777654
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-16 Score=151.79 Aligned_cols=111 Identities=27% Similarity=0.487 Sum_probs=95.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE-----CCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|+.+|..|.+||||++.+ ..++++|+++++++||+|||+|.|.+.....+....|.|+|||
T Consensus 19 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d 98 (141)
T 1v27_A 19 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD 98 (141)
T ss_dssp TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence 45789999999999999999999999999999 3478999999999999999999999644333446899999999
Q ss_pred CCCCCCC--CCccEEEEEECccceecCCeeeEEEEceecCC
Q 002002 80 DKKTGKR--STFLGKVKIAGSTFAKVGSESSVYYPLEKRSV 118 (983)
Q Consensus 80 ~~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~ 118 (983)
.+..+ + +++||++.+++..+... ....||+|.+...
T Consensus 99 ~d~~~-~~~~~~lG~~~i~l~~l~~~--~~~~W~~L~~~~~ 136 (141)
T 1v27_A 99 QARVR-EEESEFLGEILIELETALLD--DEPHWYKLQTHDS 136 (141)
T ss_dssp BCSSS-SCCBCCCEEEEEEGGGCCCS--SEEEEEECBCCSS
T ss_pred CCCCc-CCCCceEEEEEEEccccCCC--CCCceEECccccc
Confidence 88875 5 89999999999998743 2789999987753
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.5e-16 Score=150.64 Aligned_cols=105 Identities=23% Similarity=0.340 Sum_probs=90.1
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEE-----CCEEEEeeeecCCCCCeeceEEEEEEec----CCCEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY-----GPKWVRTRTILDRFNPRWNEQYTWDVYD----PCTVLTIG 657 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~-----~~~~~rT~~~~~t~nP~Wne~~~~~v~~----~~~~l~i~ 657 (983)
.+.|.|+|++|++|+++ |. .|++||||++++ +....||+++++++||+|||+|.|.+.. ....|.|+
T Consensus 20 ~~~L~v~v~~a~~L~~~---d~-~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 95 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSR---ED-GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEIT 95 (141)
T ss_dssp TTEEEEEEEEEESCCCC---SS-SCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEE
T ss_pred CCEEEEEEEEccCCCCc---CC-CCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEE
Confidence 46899999999999776 55 789999999998 3578899999999999999999999532 23699999
Q ss_pred EEeCCCCCCcCCCCCCC--CceeEEEEEEcccccCCCeEEEEEEeeecC
Q 002002 658 VFDNGRYKRDEAGKPGK--DVRVGKIRVRLSTLDTNRVYLNSYSLTVLL 704 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 704 (983)
|||++..+ + |++||++.|+|.++.... ..+||+|....
T Consensus 96 V~d~d~~~--------~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~ 135 (141)
T 1v27_A 96 LWDQARVR--------EEESEFLGEILIELETALLDD-EPHWYKLQTHD 135 (141)
T ss_dssp EEEBCSSS--------SCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCS
T ss_pred EEECCCCc--------CCCCceEEEEEEEccccCCCC-CCceEECcccc
Confidence 99999987 4 889999999999987654 78999998653
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=146.59 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=88.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---C-EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---P-KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGV 658 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~-~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v 658 (983)
..+.|.|+|++|++. |. .|++||||++.+. + ...||+++++|+||+|||+|.|.+... ...|.|+|
T Consensus 24 ~~~~L~V~v~~a~~~------d~-~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V 96 (138)
T 1wfm_A 24 QKAELFVTRLEAVTS------NH-DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTL 96 (138)
T ss_dssp TTTEEEEEEEEEECC------CC-SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEE
T ss_pred CCCEEEEEEEEEEcC------CC-CCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEE
Confidence 346899999999942 55 8899999999983 2 468999999999999999999998643 45899999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
||+|.++ +|++||++.|+|.++..+....+||+|...
T Consensus 97 ~d~d~~~--------~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 97 RTCDRFS--------RHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp EECCSSC--------TTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred EECCCCC--------CCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 9999987 788999999999999766667899999854
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-16 Score=149.02 Aligned_cols=107 Identities=22% Similarity=0.330 Sum_probs=89.7
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..|.|.|+|++|+||+++ |. .| +||||++++.+ ...||+++++|+||+|||+|.|.+... ...|.|+
T Consensus 22 ~~~~L~v~v~~a~~L~~~---d~-~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~ 96 (142)
T 2dmg_A 22 QRNKLIVVVHACRNLIAF---SE-DG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVA 96 (142)
T ss_dssp TTTEEEEEEEEEECCCCS---ST-TC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEE
T ss_pred CCCEEEEEEEEeECCCCC---CC-CC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEE
Confidence 346899999999999776 55 77 99999999842 578999999999999999999998532 3589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
|||++.+++ ..|++||++.|+|.++..+....+||+|...
T Consensus 97 V~d~d~~~~------~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 97 VKNSGGFLS------KDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp EEECCCSSC------CSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred EEECCCccc------cCCcEEEEEEEecccccccccccceeeccCC
Confidence 999998761 0246999999999999877777899999854
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-16 Score=154.79 Aligned_cols=109 Identities=28% Similarity=0.525 Sum_probs=93.1
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCe--------------EEeeeCcCCCCCCeeeeEEEEE-eeecCCCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ--------------RRRTKTKFRDLNPQWDERLEFL-VHDAESMPT 70 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~--------------~~~T~~~~~t~nP~WnE~f~f~-v~~~~~l~~ 70 (983)
.+.|.|+|++|++|+++|..|.+||||++.+.+. +++|+++++++||.|||+|.|. +.. +++..
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~-~~l~~ 95 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISM-EQLMK 95 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCH-HHHTT
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCH-HHccC
Confidence 3689999999999999999999999999999762 5789999999999999999997 543 22236
Q ss_pred ceEEEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 71 EILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 71 ~~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
..|.|+|||.+..+ ++++||++.+++..+. .+.....||+|.+++
T Consensus 96 ~~l~i~V~d~d~~~-~~~~lG~~~i~l~~l~-~~~~~~~W~~L~~~~ 140 (142)
T 1rh8_A 96 KTLEVTVWDYDRFS-SNDFLGEVLIDLSSTS-HLDNTPRWYPLKEQT 140 (142)
T ss_dssp CEEEEEEEEECSSS-CEEEEEEEEEETTSCG-GGTTCCEEEECBCCC
T ss_pred CEEEEEEEECCCCC-CCceEEEEEEeccccc-cCCCCCeEEECCccC
Confidence 79999999988876 8999999999999987 345677999998764
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-16 Score=152.47 Aligned_cols=104 Identities=26% Similarity=0.387 Sum_probs=90.1
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECCE--------------EEEeeeecCCCCCeeceEEEEE-Eec---
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK--------------WVRTRTILDRFNPRWNEQYTWD-VYD--- 649 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~--------------~~rT~~~~~t~nP~Wne~~~~~-v~~--- 649 (983)
|.|.|+|++|+||+++ |. .|++||||++++++. ..||+++++|+||.|||+|.|. +..
T Consensus 18 ~~L~V~v~~a~~L~~~---d~-~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l 93 (142)
T 1rh8_A 18 GNLIIHILQARNLVPR---DN-NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQL 93 (142)
T ss_dssp TEEEEEEEEEESCCCC---SS-SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHH
T ss_pred CEEEEEEEEecCCCCC---CC-CCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHc
Confidence 5799999999999776 55 789999999999762 4799999999999999999997 532
Q ss_pred CCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 650 PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 650 ~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
....|.|+|||++..+ +|++||++.|+|.++..+.....||+|...
T Consensus 94 ~~~~l~i~V~d~d~~~--------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 139 (142)
T 1rh8_A 94 MKKTLEVTVWDYDRFS--------SNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TTCEEEEEEEEECSSS--------CEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred cCCEEEEEEEECCCCC--------CCceEEEEEEeccccccCCCCCeEEECCcc
Confidence 3569999999999987 788999999999999876667899999854
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=147.49 Aligned_cols=104 Identities=28% Similarity=0.425 Sum_probs=89.8
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEE-EecC---CCEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWD-VYDP---CTVLTIG 657 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~-v~~~---~~~l~i~ 657 (983)
.|.|.|+|++|+||+++ |. .|++||||++++++ ...||+++++++||.|||+|.|. +... ...|.|+
T Consensus 28 ~~~L~V~v~~a~~L~~~---d~-~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~ 103 (142)
T 2chd_A 28 NSNLQCTIIRAKGLKPM---DS-NGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRIS 103 (142)
T ss_dssp GTEEEEEEEEEESCCCC---CT-TSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEE
T ss_pred CCEEEEEEEEecCCCCC---CC-CCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEE
Confidence 46899999999999776 55 78999999999965 78999999999999999999998 5322 2589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
|||++..+ +|++||++.|+|.++..+.....|++|..
T Consensus 104 V~d~d~~~--------~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 104 VCDEDKFG--------HNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp EEEECTTS--------CEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred EEECCCCC--------CCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 99999987 78899999999999998887677777753
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=149.11 Aligned_cols=111 Identities=21% Similarity=0.347 Sum_probs=92.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|+++| .|.+||||++.+. ..+++|+++++++||.|||+|.|.+...+ + ...|.|+|||
T Consensus 25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~-~~~L~i~V~d 101 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEED-D-QKRLLVTVWN 101 (153)
T ss_dssp SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGG-T-TSEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHH-h-CCEEEEEEEe
Confidence 4678999999999999999 6999999999992 36799999999999999999999985422 2 3469999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCC
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSV 118 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~ 118 (983)
.+.+++.|+|||++.+++..+...+.....||+|.+...
T Consensus 102 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~ 140 (153)
T 3fbk_A 102 RASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHL 140 (153)
T ss_dssp CCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTG
T ss_pred CCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhh
Confidence 888762389999999999998744577889999987643
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=145.16 Aligned_cols=107 Identities=21% Similarity=0.334 Sum_probs=91.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC---C-eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD---G-QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
..+.|.|+|++|+ ++|..|.+||||++.+. + .+++|+++++++||+|||+|.|.+.. .++....|.|.|||.
T Consensus 24 ~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~-~~l~~~~L~~~V~d~ 99 (138)
T 1wfm_A 24 QKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE-EELPTATLTLTLRTC 99 (138)
T ss_dssp TTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCT-TSSTTCEEEEEEEEC
T ss_pred CCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecH-HHcCCCEEEEEEEEC
Confidence 4679999999999 46788999999999993 3 46899999999999999999999865 344567899999998
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
+.++ ++++||++.+++..+. .+.....|++|.+..
T Consensus 100 d~~~-~dd~lG~~~i~l~~l~-~~~~~~~W~~L~~~~ 134 (138)
T 1wfm_A 100 DRFS-RHSVAGELRLGLDGTS-VPLGAAQWGELKTSG 134 (138)
T ss_dssp CSSC-TTSCSEEEEEESSSSS-SCTTCCEEEECCCCS
T ss_pred CCCC-CCcEEEEEEEEccccc-CcccccceeeCcCCC
Confidence 8886 8999999999999986 345678999998764
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-15 Score=147.64 Aligned_cols=106 Identities=26% Similarity=0.315 Sum_probs=89.6
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..|.|.|+|++|+||+++ |. .|.+||||++++++ ...||+++++++||.|||+|.|.+... ...|.|+
T Consensus 23 ~~~~L~V~v~~a~~L~~~---d~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~ 98 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKM---DV-GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVT 98 (159)
T ss_dssp TTTEEEEEEEEEESCCCC---ST-TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEE
T ss_pred CCCEEEEEEEEeeCCCCc---cC-CCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEE
Confidence 457899999999999776 55 78999999999852 478999999999999999999998643 3589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccc------------cCCCeEEEEEEeeec
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL------------DTNRVYLNSYSLTVL 703 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~~~~L~~~ 703 (983)
|||++.++ +|++||.+.|++..+ ..+.....||+|...
T Consensus 99 V~d~d~~~--------~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~ 148 (159)
T 1tjx_A 99 VLDYDKIG--------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (159)
T ss_dssp EEECCSSS--------CCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred EEECCCCC--------CCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence 99999987 788999999999853 235577889988754
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-16 Score=153.66 Aligned_cols=107 Identities=23% Similarity=0.361 Sum_probs=92.6
Q ss_pred CcEEEEEEEEeeCCCCCCC-CCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEE-
Q 002002 6 NRKLIVEVCNAKNLMPKDG-QGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLY- 78 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~- 78 (983)
.+.|.|+|++|++|+++|. .|.+||||+|.+.. .+++|+++++++||+|||+|.|.+... ...|.|+||
T Consensus 29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~L~~~V~~ 104 (171)
T 2q3x_A 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQ----GKVLQVIVWG 104 (171)
T ss_dssp TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCT----TEEEEEEEEE
T ss_pred CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCC----CCEEEEEEEE
Confidence 4789999999999999995 79999999999853 388999999999999999999998543 689999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCC
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSV 118 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~ 118 (983)
|.+.++ ++++||++.+++..+. .+.....||+|.+...
T Consensus 105 d~d~~~-~d~~iG~~~i~l~~l~-~~~~~~~W~~L~~~~~ 142 (171)
T 2q3x_A 105 DYGRMD-HKCFMGVAQILLEELD-LSSMVIGWYKLFPPSS 142 (171)
T ss_dssp ECSTTC-SSEEEEEEEECGGGSC-TTSCEEEEEECBCGGG
T ss_pred cCCCCC-CCCEEEEEEEEHHHcc-cCCCcceeEECCCccc
Confidence 888776 8899999999999987 4567889999988753
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=149.58 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=90.8
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeeceEEEEEEecC--CCEEEEEEEe
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-----PKWVRTRTILDRFNPRWNEQYTWDVYDP--CTVLTIGVFD 660 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-----~~~~rT~~~~~t~nP~Wne~~~~~v~~~--~~~l~i~v~D 660 (983)
|.|.|+|++|+||+++ |. .|++||||+++++ ....||+++++++||.|||+|.|.+... ...|.|+|||
T Consensus 31 ~~L~v~v~~a~~L~~~---d~-~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d 106 (149)
T 1a25_A 31 EVLIVVVRDAKNLVPM---DP-NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWD 106 (149)
T ss_dssp SEEEEEEEEEESCCCC---ST-TSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEE
T ss_pred CEEEEEEEEeeCCCCC---CC-CCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEE
Confidence 5799999999999766 55 7899999999996 3688999999999999999999999753 4589999999
Q ss_pred CCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 661 NGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 661 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
++..+ +|++||++.|+|.++..+. ..+||+|...
T Consensus 107 ~d~~~--------~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 140 (149)
T 1a25_A 107 WDLTS--------RNDFMGSLSFGISELQKAG-VDGWFKLLSQ 140 (149)
T ss_dssp CCSSS--------CCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred CCCCC--------CCCEEEEEEEEHHHhCcCc-cCCeEEccCC
Confidence 99987 7889999999999998764 6899999864
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.8e-16 Score=154.42 Aligned_cols=105 Identities=25% Similarity=0.337 Sum_probs=91.7
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEE-eC
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVF-DN 661 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~-D~ 661 (983)
|.|.|+|++|+||+++ |...|.+||||++++.+ ...||+++++|+||+|||+|.|.+......|.|+|| |+
T Consensus 30 ~~L~V~v~~a~~L~~~---d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 30 GQLEVEVIRARSLTQK---PGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDY 106 (171)
T ss_dssp TEEEEEEEEEESCCCC---C---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCC---CcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcC
Confidence 5899999999999776 42158899999999853 378999999999999999999999766679999999 99
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 662 GRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 662 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
|.++ +|++||++.|+|.++..+....+||+|...
T Consensus 107 d~~~--------~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 107 GRMD--------HKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp STTC--------SSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCC--------CCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 9987 788999999999999888888999999865
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=148.58 Aligned_cols=106 Identities=28% Similarity=0.508 Sum_probs=92.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
...|.|+|++|++|+.+|..|.+||||++.+. ..+++|+++++++||.|||+|.|.+...+. ...|.|+|||.
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~L~i~V~d~ 107 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK--DRRLSVEIWDW 107 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGG--GCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccC--CCEEEEEEEEC
Confidence 46799999999999999999999999999996 368999999999999999999999875321 46899999998
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
+..+ ++++||++.+++..+... ....||+|.+.
T Consensus 108 d~~~-~~~~iG~~~i~l~~l~~~--~~~~W~~L~~~ 140 (149)
T 1a25_A 108 DLTS-RNDFMGSLSFGISELQKA--GVDGWFKLLSQ 140 (149)
T ss_dssp CSSS-CCEEEEEEEEEHHHHTTC--CEEEEEECBCH
T ss_pred CCCC-CCCEEEEEEEEHHHhCcC--ccCCeEEccCC
Confidence 8876 899999999999998732 47789999865
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=144.65 Aligned_cols=92 Identities=27% Similarity=0.329 Sum_probs=80.6
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCC---CEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPC---TVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~---~~l~i~ 657 (983)
..|.|.|+|++|+||+.+ |. .|++||||++++++ ...+|+++++++||.|||+|.|.+.... ..|.|+
T Consensus 14 ~~~~L~v~v~~a~~L~~~---d~-~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~ 89 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAM---DI-GGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIIT 89 (138)
T ss_dssp TTTEEEEEEEEEESCCCC---BT-TTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEE
T ss_pred CCCeEEEEEEEeeCCCCc---CC-CCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEE
Confidence 457899999999999776 55 78999999999863 4789999999999999999999986544 589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEccccc
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD 689 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~ 689 (983)
|||++..+ +|++||++.|+|.++.
T Consensus 90 V~d~~~~~--------~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 90 VMDKDKLS--------RNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EEECCSSS--------CCEEEEEEEESSSSCH
T ss_pred EEECCCCC--------CCcEEEEEEEccccCC
Confidence 99999987 7889999999999764
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9.6e-16 Score=148.48 Aligned_cols=109 Identities=27% Similarity=0.455 Sum_probs=93.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEE-eeecCCCCCceEEEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFL-VHDAESMPTEILEINLY 78 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~-v~~~~~l~~~~L~v~V~ 78 (983)
..+.|.|+|++|++|+.++..|.+||||++.+.+ .+++|+++++++||.|||+|.|. +... ++....|.|+||
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~-~~~~~~l~i~V~ 105 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEE-DMQRKTLRISVC 105 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHH-HHHHCEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHH-HccCCEEEEEEE
Confidence 4578999999999999999999999999999964 78999999999999999999998 5432 122368999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
|.+..+ ++++||++.+++..+. .+.....|++|++.
T Consensus 106 d~d~~~-~d~~iG~~~i~l~~l~-~~~~~~~~~~L~~p 141 (142)
T 2chd_A 106 DEDKFG-HNEFIGETRFSLKKLK-ANQRKNFNICLERV 141 (142)
T ss_dssp EECTTS-CEEEEEEEEEEGGGCC-TTCCEEEEEECBCC
T ss_pred ECCCCC-CCcEEEEEEEEHHHcC-CCCccEEEEecccC
Confidence 988876 7899999999999987 55677888998764
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=148.69 Aligned_cols=109 Identities=19% Similarity=0.190 Sum_probs=90.4
Q ss_pred CcEEEEEEEceecccccc-ccC---CCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEEEecC---CCEEE
Q 002002 586 PIGLLEVGIRGATNLLPV-KTK---DGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLT 655 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~-~~~---d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~ 655 (983)
..|.|.|+|++|+||+.+ +.. +. .|++||||++++. ....||+++++++||+|||+|.|.+... ...|.
T Consensus 24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~-~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~ 102 (147)
T 2enp_A 24 LHNHLTVRVIEARDLPPPISHDGSRQD-MAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLL 102 (147)
T ss_dssp TTTEEEEEEEEEECCCCSCSSCCSSCT-TCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEE
T ss_pred CCCEEEEEEEEEeCCCCcccccccccc-CCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEE
Confidence 457899999999999873 211 22 4689999999986 3578999999999999999999998642 35899
Q ss_pred EEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 656 IGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 656 i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
|+|||++.++ +|++||++.|+|.++..+.....|++|...
T Consensus 103 ~~V~d~d~~~--------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 142 (147)
T 2enp_A 103 LTVVDFDKFS--------RHCVIGKVSVPLCEVDLVKGGHWWKALIPS 142 (147)
T ss_dssp EEEECCSTTC--------CSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred EEEEECCCCc--------CCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence 9999999987 678999999999999876666788888754
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-15 Score=147.34 Aligned_cols=92 Identities=26% Similarity=0.374 Sum_probs=81.1
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..|.|.|+|++|+||+++ |. .|++||||++++++ ...||+++++++||.|||+|.|.+... ...|.|+
T Consensus 35 ~~~~L~V~v~~a~~L~~~---d~-~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~ 110 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAM---DA-NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDIS 110 (166)
T ss_dssp TTTEEEEEEEEEESCCCC---ST-TSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEE
T ss_pred CCCEEEEEEEEeECCCCc---cC-CCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEE
Confidence 456899999999999776 55 78999999999975 688999999999999999999999642 4599999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEccccc
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD 689 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~ 689 (983)
|||++..+ +|++||.+.|+|.++.
T Consensus 111 V~d~d~~~--------~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 111 VWDYDIGK--------SNDYIGGCQLGISAKG 134 (166)
T ss_dssp EEECCSSS--------CCEEEEEEEEETTCCH
T ss_pred EEECCCCC--------CCcEEEeEEEecccCC
Confidence 99999987 7889999999999863
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=147.67 Aligned_cols=111 Identities=26% Similarity=0.363 Sum_probs=92.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|+++|..| +||||++.+.. .+++|+++++++||.|||+|.|.+... ++....|.|+|||
T Consensus 22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~L~i~V~d 99 (142)
T 2dmg_A 22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLP-EVQRRTLDVAVKN 99 (142)
T ss_dssp TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHH-HHHHCEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHH-HhCcCEEEEEEEE
Confidence 4578999999999999999999 99999999932 688999999999999999999998542 1224589999999
Q ss_pred CCCCCCC-CCccEEEEEECccceecCCeeeEEEEceecCC
Q 002002 80 DKKTGKR-STFLGKVKIAGSTFAKVGSESSVYYPLEKRSV 118 (983)
Q Consensus 80 ~~~~~~~-d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~ 118 (983)
.+.++++ +++||++.+++..+. .+.....||+|.+.+.
T Consensus 100 ~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 100 SGGFLSKDKGLLGKVLVALASEE-LAKGWTQWYDLTEDSG 138 (142)
T ss_dssp CCCSSCCSCCCCEEEEEECCCST-TTTCBCCBCCCBCSCS
T ss_pred CCCccccCCcEEEEEEEeccccc-ccccccceeeccCCCC
Confidence 8877533 579999999999986 3346788999987753
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=135.51 Aligned_cols=122 Identities=21% Similarity=0.269 Sum_probs=105.6
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcC-CCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCC
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKF-RDLNPQWDERLEFLVHDAESMPTEILEINLYNDKK 82 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~ 82 (983)
+..+-|+|+|.+|.+|+ |++|||+++.|.+.+++|++++ +++||+|||.|+|.+..+ ...+..|.|.|||.++
T Consensus 18 ~~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~-ld~~e~L~v~V~d~~~ 91 (144)
T 3l9b_A 18 GSHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASS-IDRNEVLEIQIFNYSK 91 (144)
T ss_dssp -CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSC-CCTTCEEEEEEEEECT
T ss_pred CCcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCC-CCCCCEEEEEEEECcc
Confidence 45577999999999998 5899999999999999999998 699999999999999873 4568899999999999
Q ss_pred CCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 83 TGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
++ ++++||++.++|.++... .....+-+|.+.+.. .+.++|.+.+.|.+
T Consensus 92 v~-~nrlIG~~~i~Lq~lv~~-~~l~l~~~LvD~n~~-~~~a~I~l~l~Y~p 140 (144)
T 3l9b_A 92 VF-SNKLIGTFRMVLQKVVEE-NRVEVSDTLIDDNNA-IIKTSLSMEVRYQA 140 (144)
T ss_dssp TS-CCEEEEEEEEESHHHHHH-SEEEEEEEEECTTSC-EEEEEEEEEEEEEE
T ss_pred cc-CCCEEEEEEEEhHHhccC-CeEEEeecccCCCCC-ccccEEEEEEEecC
Confidence 97 899999999999999843 455567888887655 35699999999985
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=147.79 Aligned_cols=94 Identities=18% Similarity=0.359 Sum_probs=83.7
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|+.+|..|.+||||++.+.+ .+++|+++++++||.|||+|.|.+... .+....|.|+|||
T Consensus 35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~L~i~V~d 113 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS-DLAKKSLDISVWD 113 (166)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGG-GGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchH-hcCCCEEEEEEEE
Confidence 4578999999999999999999999999999965 689999999999999999999998653 2335699999999
Q ss_pred CCCCCCCCCccEEEEEECccc
Q 002002 80 DKKTGKRSTFLGKVKIAGSTF 100 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l 100 (983)
.+.++ ++++||++.+++..+
T Consensus 114 ~d~~~-~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 114 YDIGK-SNDYIGGCQLGISAK 133 (166)
T ss_dssp CCSSS-CCEEEEEEEEETTCC
T ss_pred CCCCC-CCcEEEeEEEecccC
Confidence 88876 899999999999975
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=147.85 Aligned_cols=110 Identities=19% Similarity=0.256 Sum_probs=91.5
Q ss_pred CCcEEEEEEEEeeCCCCC-CC------CCCCCeEEEEEEC---CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEE
Q 002002 5 CNRKLIVEVCNAKNLMPK-DG------QGTASAYVIVDFD---GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILE 74 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~-d~------~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~ 74 (983)
..+.|.|+|++|++|+.+ |. .|.+||||+|.+. .++++|+++++++||+|||+|.|.+... .+....|.
T Consensus 24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~L~ 102 (147)
T 2enp_A 24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFL-EAQRRTLL 102 (147)
T ss_dssp TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHH-HHHHSEEE
T ss_pred CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChH-HhccCEEE
Confidence 457899999999999984 43 3589999999995 3688999999999999999999998652 12246899
Q ss_pred EEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 75 INLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 75 v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
|+|||.+.++ ++++||++.+++..+. .+.....|+.|.+++
T Consensus 103 ~~V~d~d~~~-~~~~iG~~~i~l~~l~-~~~~~~~w~~L~~~~ 143 (147)
T 2enp_A 103 LTVVDFDKFS-RHCVIGKVSVPLCEVD-LVKGGHWWKALIPSG 143 (147)
T ss_dssp EEEECCSTTC-CSCCCEEEEEETTTSC-TTTCCCEEECCBCCC
T ss_pred EEEEECCCCc-CCcEEEEEEEechhcC-CCCCccEEEEeecCC
Confidence 9999988876 7899999999999987 334567899999764
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-15 Score=145.92 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=93.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|+||+.+|..|.+||||++.+.+ .+++|+++++++||.|||+|.|.+... ++....|.|+|||
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~l~i~V~d 101 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE-QIQKVQVVVTVLD 101 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG-GGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHH-HhCCcEEEEEEEE
Confidence 4579999999999999999999999999999952 578999999999999999999998653 2335689999999
Q ss_pred CCCCCCCCCccEEEEEECccc----------e-ecCCeeeEEEEceecC
Q 002002 80 DKKTGKRSTFLGKVKIAGSTF----------A-KVGSESSVYYPLEKRS 117 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l----------~-~~~~~~~~w~~L~~~~ 117 (983)
.+.++ ++++||++.+++..+ . ..+....+||+|.+..
T Consensus 102 ~d~~~-~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~ 149 (159)
T 1tjx_A 102 YDKIG-KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE 149 (159)
T ss_dssp CCSSS-CCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred CCCCC-CCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcc
Confidence 88876 899999999999853 2 2245667999998764
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-15 Score=140.79 Aligned_cols=117 Identities=21% Similarity=0.314 Sum_probs=86.7
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeec-CCCCCeeceEEEEEEecCCCEEEEEEEeCCCC
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTIL-DRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRY 664 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~-~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~ 664 (983)
.+|.|.|+|++|++|+. .|++||||+++ + +..+|++++ +++||.|||+|.|.+.++...|.|+|||+| .
T Consensus 3 ~~~~L~V~V~~A~~l~~-------~g~~DPYv~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~ 72 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA-------QEKFNTYVTLK-V-QNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-L 72 (131)
T ss_dssp CCEEEEEEEEEEECSSC-------GGGCEEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-S
T ss_pred cceEEEEEEEEeECCCC-------CCCcCeEEEEE-e-cCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-C
Confidence 46899999999998831 67899999999 3 344676665 699999999999999888889999999999 7
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCC--eEEEEEEeeec--CCCC----C--ccceEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTNR--VYLNSYSLTVL--LPGG----A--KKMGEIEIAVRF 720 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~--~~~~~~~L~~~--~~~g----~--~~~G~l~l~~~f 720 (983)
+ +|++||++.|+|.++.... ....|.++... ...| . ...+.+.+.++|
T Consensus 73 ~--------~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 73 I--------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp S--------CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred C--------CCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 6 7889999999999985322 11245544422 1122 1 113558888887
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=7e-15 Score=141.58 Aligned_cols=95 Identities=26% Similarity=0.406 Sum_probs=83.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|+.+|..|.+||||++.+.+ .+++|+++++++||.|||+|.|.+... .+....|.|+|||
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~l~~~~l~~~V~d 92 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE-KLRETTIIITVMD 92 (138)
T ss_dssp TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGG-GGGGEEEEEEEEE
T ss_pred CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChh-hcCceEEEEEEEE
Confidence 4678999999999999999999999999999963 588999999999999999999998653 2334689999999
Q ss_pred CCCCCCCCCccEEEEEECccce
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFA 101 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~ 101 (983)
.+..+ ++++||++.+++..+.
T Consensus 93 ~~~~~-~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 93 KDKLS-RNDVIGKIYLSWKSGP 113 (138)
T ss_dssp CCSSS-CCEEEEEEEESSSSCH
T ss_pred CCCCC-CCcEEEEEEEccccCC
Confidence 88876 8999999999998643
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=142.47 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=80.6
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEE--CCE---EEEeeeecCCCCCeeceEEEEEEecCC---CEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY--GPK---WVRTRTILDRFNPRWNEQYTWDVYDPC---TVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~--~~~---~~rT~~~~~t~nP~Wne~~~~~v~~~~---~~l~i~ 657 (983)
..|.|.|+|++|+||+.+ |. .|++||||++++ ++. ..||+++++++||.|||+|.|.+.... ..|.|+
T Consensus 28 ~~~~L~v~v~~a~~L~~~---d~-~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~ 103 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKS---DV-SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFL 103 (153)
T ss_dssp TTTEEEEEEEEEESCC----------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEE
T ss_pred CCCEEEEEEEEeECCCCc---CC-CCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEE
Confidence 457899999999999766 55 788999999998 333 679999999999999999999987542 589999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 702 (983)
|||++.++ +|++||++.|+|++. +..+.+||+|..
T Consensus 104 V~d~d~~~--------~~~~lG~~~i~l~~~--~~~~~~W~~l~~ 138 (153)
T 1w15_A 104 VLDSERGS--------RNEVIGRLVLGATAE--GSGGGHWKEICD 138 (153)
T ss_dssp EEECCTTS--------CCEEEEEEEESTTCC--SHHHHHHHHHHH
T ss_pred EEeCCCCC--------CCcEEEEEEECCCCC--chHHHHHHHHHh
Confidence 99999987 788999999999883 233355555543
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=142.23 Aligned_cols=106 Identities=20% Similarity=0.312 Sum_probs=82.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CCe---EEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DGQ---RRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~---~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|++|+.+|..|.+||||++.+ ++. +++|+++++++||.|||+|.|.+... .+....|.|+|||
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~l~v~V~d 106 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE-SLEEISVEFLVLD 106 (153)
T ss_dssp TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSS-SSTTEEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHH-HhCceEEEEEEEe
Confidence 45789999999999999999999999999999 443 77999999999999999999998663 3445789999999
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEcee
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEK 115 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 115 (983)
.+.++ ++++||++.+++... +.....|+.|..
T Consensus 107 ~d~~~-~~~~lG~~~i~l~~~---~~~~~~W~~l~~ 138 (153)
T 1w15_A 107 SERGS-RNEVIGRLVLGATAE---GSGGGHWKEICD 138 (153)
T ss_dssp CCTTS-CCEEEEEEEESTTCC---SHHHHHHHHHHH
T ss_pred CCCCC-CCcEEEEEEECCCCC---chHHHHHHHHHh
Confidence 88876 899999999999882 233444555544
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.6e-15 Score=140.42 Aligned_cols=87 Identities=24% Similarity=0.258 Sum_probs=72.8
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcC-CCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKF-RDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
.+.|.|+|++|++|.. .|.+||||+++ ++..+|++++ +++||.|||+|.|.+... ...|.|+|||.+ .+
T Consensus 4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~----~~~L~~~V~D~d-~~ 73 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL----DLGLTVEVWNKG-LI 73 (131)
T ss_dssp CEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC----SSEEEEEEEECC-SS
T ss_pred ceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC----CCeEEEEEEECC-CC
Confidence 5799999999998852 67899999999 4444565554 799999999999999764 567999999988 65
Q ss_pred CCCCccEEEEEECccceec
Q 002002 85 KRSTFLGKVKIAGSTFAKV 103 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~ 103 (983)
+|++||++.|++..+...
T Consensus 74 -~dd~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 74 -WDTMVGTVWIPLRTIRQS 91 (131)
T ss_dssp -CEEEEEEEEEEGGGSCBC
T ss_pred -CCCeEEEEEEEHHHhhhc
Confidence 899999999999998743
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-14 Score=164.10 Aligned_cols=115 Identities=21% Similarity=0.259 Sum_probs=98.6
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEec--CCCEEEEEEEeCC
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYD--PCTVLTIGVFDNG 662 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~--~~~~l~i~v~D~d 662 (983)
...|.|.|+|++|+||+. |. .|++||||++++++...||+++++++||+|||+|.|.+.+ ....|.|+|||+|
T Consensus 391 ~~~~~L~V~V~~A~~L~~----D~-~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D 465 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG----DY-TTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDAD 465 (540)
T ss_dssp TTEEEEEEEEEEEESCCC----SS-CSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECC
T ss_pred CcccEEEEEEEEccCCCc----cc-CCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECC
Confidence 358999999999999954 56 8899999999999989999999999999999999999754 5678999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEecCh
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCSSW 725 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~~~ 725 (983)
..+ +|++||.+.++|. .|. ...|++|. .|+|++.+..+|...
T Consensus 466 ~~~--------~dD~LG~~~~~L~---~g~-~~~~~~l~---------~G~l~~~~~~~c~p~ 507 (540)
T 3nsj_A 466 YGW--------DDDLLGSCDRSPH---SGF-HEVTCELN---------HGRVKFSYHAKCLPH 507 (540)
T ss_dssp SSS--------CCEEEEEEEECCC---SEE-EEEEEECS---------SSEEEEEEEEEECTT
T ss_pred CCC--------CCCEEEEEEEEee---CCc-EEEEEEcC---------CeEEEEEEEEEECCC
Confidence 987 7889999999987 343 46677643 499999999998643
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.2e-14 Score=129.39 Aligned_cols=116 Identities=18% Similarity=0.250 Sum_probs=99.5
Q ss_pred EEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeec-CCCCCeeceEEEEEEec---CCCEEEEEEEeCCCC
Q 002002 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTIL-DRFNPRWNEQYTWDVYD---PCTVLTIGVFDNGRY 664 (983)
Q Consensus 589 ~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~-~t~nP~Wne~~~~~v~~---~~~~l~i~v~D~d~~ 664 (983)
-|+|.|.+|.|| .|++|||+.+.+.+.+.+|+++. .+.||+|||.|+|++.. ....|.|.|||++++
T Consensus 22 sL~V~l~~a~~L---------pg~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v 92 (144)
T 3l9b_A 22 ALIVHLKTVSEL---------RGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV 92 (144)
T ss_dssp EEEEEEEEEESC---------CSCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred EEEEEEEEecCC---------CCCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence 588999999999 46899999999999999999998 59999999999999964 456999999999999
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
+ +|.+||++.++|.++..+.....+.+|.+.+.+ ...|+|.++++|.+.
T Consensus 93 ~--------~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~--~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 93 F--------SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNA--IIKTSLSMEVRYQAA 141 (144)
T ss_dssp S--------CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSC--EEEEEEEEEEEEEET
T ss_pred c--------CCCEEEEEEEEhHHhccCCeEEEeecccCCCCC--ccccEEEEEEEecCC
Confidence 8 789999999999999877666666777765332 234899999999753
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.9e-14 Score=137.58 Aligned_cols=118 Identities=19% Similarity=0.129 Sum_probs=88.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcC-CCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKF-RDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKT 83 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~ 83 (983)
....|.|+|++|++|. ..|.+||||+|+ ++..+|++++ +++||.|||+|.|.+... ...|.|+|||.+ .
T Consensus 12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~----~~~L~~~V~D~d-~ 81 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL----DLGLTVEVWNKG-L 81 (167)
T ss_dssp CCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT----TSEEEEEEEECC-S
T ss_pred ceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC----CCEEEEEEEECC-C
Confidence 4579999999999884 267899999999 4445676665 699999999999999865 568999999987 6
Q ss_pred CCCCCccEEEEEECccceecC-----CeeeEEEEceecCCc-----ceeeeEEEEEEEEe
Q 002002 84 GKRSTFLGKVKIAGSTFAKVG-----SESSVYYPLEKRSVF-----SQIKGEIGLKVYYI 133 (983)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~~~-----~~~~~w~~L~~~~~~-----s~~~G~l~l~i~~~ 133 (983)
+ +|++||++.|+|..+...+ .-...|+.+....+. ....|.+++++.+.
T Consensus 82 ~-~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 82 I-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp S-CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred C-CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 5 8999999999999986433 123345555433221 12345677887764
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=7e-14 Score=138.36 Aligned_cols=116 Identities=21% Similarity=0.305 Sum_probs=88.8
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeec-CCCCCeeceEEEEEEecCCCEEEEEEEeCCCC
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTIL-DRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRY 664 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~-~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~ 664 (983)
.+|.|.|+|++|++|+ . .|++||||+++ .+..||++++ +++||+|||+|.|.+.+....|.|+|||+| .
T Consensus 12 ~~~~L~V~V~~A~~l~------~-~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~ 81 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDG------A-QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-L 81 (167)
T ss_dssp CCCEEEEEEEEEECSS------C-GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-S
T ss_pred ceEEEEEEEEEEECCC------C-CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-C
Confidence 4789999999999883 1 67899999999 3345777776 699999999999999988889999999999 7
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCC------eEEEEEEeeecCCCCC------ccceEEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTNR------VYLNSYSLTVLLPGGA------KKMGEIEIAVRFT 721 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~g~------~~~G~l~l~~~f~ 721 (983)
+ +|++||++.|+|.++.... ....+|.+... .|. ...|.+.++++|.
T Consensus 82 ~--------~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~--~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 82 I--------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMA--DSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp S--------CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEE--TTEEEEEEEEEEEEEEEEEEEE
T ss_pred C--------CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcC--CCCCCceEccccceEEEEEEee
Confidence 6 7889999999999985422 22234443322 221 1235588888885
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-14 Score=165.71 Aligned_cols=119 Identities=26% Similarity=0.420 Sum_probs=102.3
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCC-CEEEEEEEeCCC
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPC-TVLTIGVFDNGR 663 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~-~~l~i~v~D~d~ 663 (983)
...|.|.|+|++|+||+++ |. .|++||||++.+++...+|+++++|+||.|||+|.|.+..+. ..|.|+|||+|.
T Consensus 384 ~~~~~l~v~v~~a~~L~~~---d~-~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~ 459 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKAC---KP-NGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ 459 (510)
T ss_dssp --CEEEEEEEEEEESCCCC---ST-TSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS
T ss_pred CCCceEEEEeceeecCCCC---CC-CCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC
Confidence 4689999999999999765 66 889999999999999999999999999999999999998766 589999999999
Q ss_pred CCCcCCCCCCCCceeEEEEEEcccccCCCe----EEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 664 YKRDEAGKPGKDVRVGKIRVRLSTLDTNRV----YLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 664 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
.+ +|++||++.++|.++..+.. ...|++|... ..|+|++.+.+.
T Consensus 460 ~~--------~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------~~G~i~l~~~l~ 507 (510)
T 3jzy_A 460 FS--------PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------PTGEVWVRFDLQ 507 (510)
T ss_dssp SS--------SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------SSCEEEEEEEEE
T ss_pred CC--------CCCceEEEEEEHHHhccccCCCCceeeeecCCCC------CCceEEEEEEEE
Confidence 88 78899999999999976543 5688887633 359998888764
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=161.67 Aligned_cols=120 Identities=21% Similarity=0.352 Sum_probs=102.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
+.+.|.|+|++|++|+++|..|.+||||++.+++++++|+++++++||.|||+|.|.+.... ...|.|+|||.+..+
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~---~~~l~~~v~d~d~~~ 461 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLY---QDVLCLTLFDRDQFS 461 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTT---TCEEEEEEEECCSSS
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCC---CCEEEEEEEeCCCCC
Confidence 44689999999999999999999999999999999999999999999999999999996553 578999999988886
Q ss_pred CCCCccEEEEEECccceecC---CeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 85 KRSTFLGKVKIAGSTFAKVG---SESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~---~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
+|+|||++.+++..+.... .....|++|... ..|+|.+++.+.
T Consensus 462 -~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~-----~~G~i~l~~~l~ 507 (510)
T 3jzy_A 462 -PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV-----PTGEVWVRFDLQ 507 (510)
T ss_dssp -SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS-----SSCEEEEEEEEE
T ss_pred -CCCceEEEEEEHHHhccccCCCCceeeeecCCCC-----CCceEEEEEEEE
Confidence 8999999999999987321 226789999765 358888887653
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-13 Score=156.10 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=95.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
+.+.|.|+|++|++|+. |..|++||||+|.+++++++|+++++++||+|||+|.|.+.... ....|.|+|||.|...
T Consensus 392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~--~~~~L~~~V~D~D~~~ 468 (540)
T 3nsj_A 392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLS--TGGPLRVQVWDADYGW 468 (540)
T ss_dssp TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETT--TCCCEEEEEEECCSSS
T ss_pred cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCC--CCCEEEEEEEECCCCC
Confidence 35689999999999998 99999999999999999999999999999999999999875421 2678999999988876
Q ss_pred CCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 85 KRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
+|||||++.++|.. .....|++|. .|+|++++...
T Consensus 469 -~dD~LG~~~~~L~~-----g~~~~~~~l~--------~G~l~~~~~~~ 503 (540)
T 3nsj_A 469 -DDDLLGSCDRSPHS-----GFHEVTCELN--------HGRVKFSYHAK 503 (540)
T ss_dssp -CCEEEEEEEECCCS-----EEEEEEEECS--------SSEEEEEEEEE
T ss_pred -CCCEEEEEEEEeeC-----CcEEEEEEcC--------CeEEEEEEEEE
Confidence 88999999999873 2356788875 28888887755
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.45 E-value=8.9e-13 Score=157.19 Aligned_cols=121 Identities=17% Similarity=0.283 Sum_probs=103.9
Q ss_pred CCcEEEEEEEEeeCCCCCCC--CCCCCeEEEEEECC-----eEEeeeCcCCC-CCCeeeeEEEEEeeecCCCCCceEEEE
Q 002002 5 CNRKLIVEVCNAKNLMPKDG--QGTASAYVIVDFDG-----QRRRTKTKFRD-LNPQWDERLEFLVHDAESMPTEILEIN 76 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~~~~t-~nP~WnE~f~f~v~~~~~l~~~~L~v~ 76 (983)
....|.|+|++|++|+..+. .|.+||||+|.+.+ .+++|++++++ +||+|||+|.|.+..++ ...|.|.
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~e---l~~L~~~ 571 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD---LALVRFM 571 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGG---GCEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCC---CCEEEEE
Confidence 45789999999999999884 68999999999944 68999999997 99999999999997763 3689999
Q ss_pred EEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 77 LYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 77 V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
|||++.++ +++|||++.+++..+.. ..+|++|.+..+.....|.|.+++.+.
T Consensus 572 V~D~D~~~-~dd~iG~~~ipl~~L~~----G~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 572 VEDYDSSS-KNDFIGQSTIPWNSLKQ----GYRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp EEECCSSS-CCEEEEEEEEEGGGBCC----EEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEEcCCCC-CCceeEEEEEEHHHcCC----CcEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 99988886 89999999999999862 457999988766654678999998875
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-14 Score=166.28 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=21.0
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCE-EEEeeeecCC---CCCeeceEEEEEEecCCCEEEEEEEeC
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK-WVRTRTILDR---FNPRWNEQYTWDVYDPCTVLTIGVFDN 661 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-~~rT~~~~~t---~nP~Wne~~~~~v~~~~~~l~i~v~D~ 661 (983)
..|.|+|+|++|+||+++ .||||++.+++. +.||+++++| +||.|||+|+|.+......|.|+|||.
T Consensus 9 ~~~~L~V~VieAk~L~~~---------ddpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~ 79 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPK---------KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRD 79 (483)
T ss_dssp EEECC------------------------------------------------------CCEECC---------------
T ss_pred eccEEEEEEEEcCCcCCC---------CCCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEec
Confidence 357899999999999664 289999999875 7799999999 999999999999766567999999994
Q ss_pred -CC---CCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCC---------------------CCCccceEEEE
Q 002002 662 -GR---YKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLP---------------------GGAKKMGEIEI 716 (983)
Q Consensus 662 -d~---~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~---------------------~g~~~~G~l~l 716 (983)
|. .+ +|++||++.|++.++..+....+||+|...+. +|.+..|+|++
T Consensus 80 ~d~~~~~~--------~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL 151 (483)
T 3bxj_A 80 SDKKRKKD--------KAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRL 151 (483)
T ss_dssp -----------------------------------CCEECC--------------------------------------C
T ss_pred CCccccCC--------CCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEE
Confidence 42 44 67899999999999998888899999976543 12234699999
Q ss_pred EEEEEe
Q 002002 717 AVRFTC 722 (983)
Q Consensus 717 ~~~f~~ 722 (983)
.++|+.
T Consensus 152 ~v~~~~ 157 (483)
T 3bxj_A 152 KARYQT 157 (483)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 999975
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=154.70 Aligned_cols=121 Identities=19% Similarity=0.271 Sum_probs=100.8
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCC-CCCeeceEEEEEEecCC-CEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDR-FNPRWNEQYTWDVYDPC-TVLTIGV 658 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t-~nP~Wne~~~~~v~~~~-~~l~i~v 658 (983)
..+.|.|+|++|++|+.++. +. .|++||||++.+.+ ...||++++++ +||+|||+|.|.+..+. ..|.|+|
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~-~~-~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V 572 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNK-NK-NSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMV 572 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSS-CS-SSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccc-cc-cCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEE
Confidence 56899999999999987642 12 57899999999843 68899999998 99999999999998764 5899999
Q ss_pred EeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCc-cceEEEEEEEEE
Q 002002 659 FDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAK-KMGEIEIAVRFT 721 (983)
Q Consensus 659 ~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~l~l~~~f~ 721 (983)
||+|..+ +|++||++.|+|..|..|. +|+||.... |.. ..|+|.+.+.|+
T Consensus 573 ~D~D~~~--------~dd~iG~~~ipl~~L~~G~---r~v~L~d~~--g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 573 EDYDSSS--------KNDFIGQSTIPWNSLKQGY---RHVHLLSKN--GDQHPSATLFVKISIQ 623 (624)
T ss_dssp EECCSSS--------CCEEEEEEEEEGGGBCCEE---EEEEEECTT--SCEEEEEEEEEEEEEE
T ss_pred EEcCCCC--------CCceeEEEEEEHHHcCCCc---EEEeCCCCC--cCCCCceEEEEEEEEE
Confidence 9999987 7889999999999998874 589998653 322 358888888774
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=155.00 Aligned_cols=107 Identities=26% Similarity=0.420 Sum_probs=94.8
Q ss_pred CCCcEEEEEEEEeeCCCC---CCCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEE
Q 002002 4 SCNRKLIVEVCNAKNLMP---KDGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINL 77 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~---~d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V 77 (983)
...+.|.|+|++|++|++ +|..|.+||||+|.+++ ++++|+++++++||+|||+|.|.+..+. ...|.|+|
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~---~~~L~~~V 91 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ---ENVLEITL 91 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS---CCBCEEEE
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCC---CCEEEEEE
Confidence 356799999999999998 88889999999999984 7899999999999999999999997642 67899999
Q ss_pred EeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 78 YNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 78 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
||.+..+ |++||++.+++..+. .+.....|++|.+.
T Consensus 92 ~D~D~~~--ddfIG~v~I~L~~L~-~g~~~~~w~~L~~~ 127 (749)
T 1cjy_A 92 MDANYVM--DETLGTATFTVSSMK-VGEKKEVPFIFNQV 127 (749)
T ss_dssp EECCSSS--CEEEEEECCBSTTSC-TTCCCCEEEEETTT
T ss_pred EECCCCC--CceeEEEEEEHHHcC-CCCceEEEEecCCC
Confidence 9988774 899999999999986 56677899999865
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-12 Score=156.26 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=93.1
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC---EEEEeeeecCCCCCeeceEEEEEEecC-CCEEEEEEEe
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWDVYDP-CTVLTIGVFD 660 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~---~~~rT~~~~~t~nP~Wne~~~~~v~~~-~~~l~i~v~D 660 (983)
.+.|.|.|+|++|++|++.+.+|. .|++||||++++++ ...||+++++++||+|||+|.|.+..+ ...|+|+|||
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~-~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D 93 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDM-LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD 93 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHH-HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEE
T ss_pred CCccEEEEEEEEEECCCCccccCC-CCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEE
Confidence 568999999999999976110245 78999999999984 688999999999999999999999874 5689999999
Q ss_pred CCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 661 NGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 661 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
+|.++ |++||++.|+|.+|..+....+|++|.
T Consensus 94 ~D~~~---------ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 94 ANYVM---------DETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp CCSSS---------CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred CCCCC---------CceeEEEEEEHHHcCCCCceEEEEecC
Confidence 99864 679999999999999888788999986
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.5e-13 Score=156.82 Aligned_cols=120 Identities=25% Similarity=0.328 Sum_probs=20.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCe-EEeeeCcCCC---CCCeeeeEEEEEeeecCCCCCceEEEEEEeC-
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ-RRRTKTKFRD---LNPQWDERLEFLVHDAESMPTEILEINLYND- 80 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~t---~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~- 80 (983)
.+.|.|+|++|++|+++| ||||++.++++ ..||+++++| +||.|||+|.|.+... ...|.|.|||+
T Consensus 10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~----~~~L~v~V~d~~ 80 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA----VRALRLHLYRDS 80 (483)
T ss_dssp EECC--------------------------------------------------CCEECC--------------------
T ss_pred ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC----ccEEEEEEEecC
Confidence 467999999999999886 99999999885 6799999999 9999999999997543 47899999984
Q ss_pred C---CCCCCCCccEEEEEECccceecCCeeeEEEEceecCC----------------------cceeeeEEEEEEEEecC
Q 002002 81 K---KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSV----------------------FSQIKGEIGLKVYYIDE 135 (983)
Q Consensus 81 ~---~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~----------------------~s~~~G~l~l~i~~~~~ 135 (983)
+ +.+ +|+|||++.|++..+. .+.....||+|..... .....|+|+|++.|...
T Consensus 81 d~~~~~~-~d~~lG~v~i~l~~l~-~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~ 158 (483)
T 3bxj_A 81 DKKRKKD-KAGYVGLVTVPVATLA-GRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTM 158 (483)
T ss_dssp ----------------------------CCEECC--------------------------------------CEEEEEEC
T ss_pred CccccCC-CCceEEEEEEEHHHhc-CCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeee
Confidence 3 244 8999999999999987 4567789999954322 11346999999999754
Q ss_pred C
Q 002002 136 D 136 (983)
Q Consensus 136 ~ 136 (983)
.
T Consensus 159 ~ 159 (483)
T 3bxj_A 159 S 159 (483)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=5e-10 Score=136.36 Aligned_cols=115 Identities=24% Similarity=0.310 Sum_probs=95.2
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC------eEEeeeCcCC-CCCCeeee-EEEEE-eeecCCCCCceEEEEE
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG------QRRRTKTKFR-DLNPQWDE-RLEFL-VHDAESMPTEILEINL 77 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~-t~nP~WnE-~f~f~-v~~~~~l~~~~L~v~V 77 (983)
..|.|+|++|++|+.+ .+||||+|.+.+ .+++|+++++ ++||+||| +|.|. +..++ ...|.|.|
T Consensus 725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pe---la~Lrf~V 797 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPT---LASLRIAA 797 (885)
T ss_dssp EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGG---GCEEEEEE
T ss_pred eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCC---cCEEEEEE
Confidence 5799999999999853 689999999964 3579999976 59999999 69998 65553 45799999
Q ss_pred EeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecCCC
Q 002002 78 YNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDEDP 137 (983)
Q Consensus 78 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~~ 137 (983)
||++ ++|||++.+|+..|. ...++++|.+..+.....|.|.+.+.+.+..+
T Consensus 798 ~D~d-----ddfiG~~~lpL~~L~----~GyR~vpL~~~~g~~l~~atLfv~i~~~~~~~ 848 (885)
T 3ohm_B 798 FEEG-----GKFVGHRILPVSAIR----SGYHYVCLRNEANQPLCLPALLIYTEASDYIP 848 (885)
T ss_dssp EETT-----TEEEEEEEEETTTCC----CEEEEEEEECTTSCEEEEEEEEEEEEEEECCC
T ss_pred EcCC-----ccEEeeEEEEHHHcC----CCceEEEecCCCCCccCceEEEEEEEEEecCC
Confidence 9764 789999999999986 35678999988777667899999999986443
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.07 E-value=9.9e-10 Score=133.16 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=95.7
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-------eEEeeeCcCC-CCCCeeeeE-EEEE-eeecCCCCCceEEEE
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-------QRRRTKTKFR-DLNPQWDER-LEFL-VHDAESMPTEILEIN 76 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~~~~-t~nP~WnE~-f~f~-v~~~~~l~~~~L~v~ 76 (983)
..|.|+|++|++|+.+ .+||||+|.+.+ ++++|+++++ ++||+|||+ |.|. +..++ -..|.|.
T Consensus 650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pe---la~Lrf~ 722 (816)
T 3qr0_A 650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPD---LAVVRII 722 (816)
T ss_dssp EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGG---GCEEEEE
T ss_pred eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCC---ccEEEEE
Confidence 6799999999999853 689999999964 5789999886 699999998 9998 76553 3589999
Q ss_pred EEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecCCC
Q 002002 77 LYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDEDP 137 (983)
Q Consensus 77 V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~~ 137 (983)
|||++ ++|||++.+|+..+. ...++++|.+..+..-..+.|.+.+.+.+..+
T Consensus 723 V~D~d-----ddfiG~~~ipL~~L~----~GyR~vpL~~~~g~~~~~atLfv~i~~~~~~~ 774 (816)
T 3qr0_A 723 VSEEN-----GKFIGHRVMPLDGIK----PGYRHVPLRNESNRPLGLASVFAHIVAKDYVS 774 (816)
T ss_dssp EEETT-----SCEEEEEEEESTTCC----CEEEEEEEECTTSCEEEEEEEEEEEEEEECCC
T ss_pred EEecC-----CCeeeEEEEEHHHcC----CcceEEEEeCCCCCCCCceEEEEEEEEEecCc
Confidence 99753 689999999999986 35678999988776656699999999886544
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.1e-10 Score=138.33 Aligned_cols=107 Identities=28% Similarity=0.521 Sum_probs=92.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE-----CCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
...|.|+|++|++|.++|..|.+||||++.+ ...+++|+++++++||.|||+|.|.+...+ ....|.|+|||.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~--~~~~L~v~v~d~ 248 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESD--KDRRLSVEIWDW 248 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTT--TTCEEEEEEEEC
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCC--ccceeeeEEeec
Confidence 4679999999999999999999999999999 346889999999999999999999987543 245799999998
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
+..+ +|++||++.+++.++... ....|+.|....
T Consensus 249 d~~~-~dd~iG~~~i~l~~l~~~--~~~~w~~Lls~~ 282 (674)
T 3pfq_A 249 DLTS-RNDFMGSLSFGISELQKA--GVDGWFKLLSQE 282 (674)
T ss_dssp CSSS-CCEECCBCCCBTTHHHHC--CEEEEEECBCTT
T ss_pred cccc-ccccccccccchhhhccC--Ccccceeecccc
Confidence 8886 899999999999998743 358899987653
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-10 Score=138.71 Aligned_cols=104 Identities=27% Similarity=0.436 Sum_probs=90.2
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEE-----CCEEEEeeeecCCCCCeeceEEEEEEec--CCCEEEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY-----GPKWVRTRTILDRFNPRWNEQYTWDVYD--PCTVLTIGVF 659 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~-----~~~~~rT~~~~~t~nP~Wne~~~~~v~~--~~~~l~i~v~ 659 (983)
.+.|.|.|++|++|+++ |. .|++||||++++ +....+|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 171 ~~~L~V~v~~a~~L~~~---d~-~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~ 246 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPM---DP-NGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIW 246 (674)
T ss_dssp SSEEEEEEEEEESCCCC---ST-TSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEE
T ss_pred cceeeeeeecccccCCC---Cc-ccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEe
Confidence 35799999999999776 56 899999999998 3467899999999999999999999864 3457999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
|+|..+ +|++||.+.++++++..+.. .+||+|...
T Consensus 247 d~d~~~--------~dd~iG~~~i~l~~l~~~~~-~~w~~Lls~ 281 (674)
T 3pfq_A 247 DWDLTS--------RNDFMGSLSFGISELQKAGV-DGWFKLLSQ 281 (674)
T ss_dssp ECCSSS--------CCEECCBCCCBTTHHHHCCE-EEEEECBCT
T ss_pred eccccc--------ccccccccccchhhhccCCc-ccceeeccc
Confidence 999988 78899999999999986653 889988764
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-09 Score=131.26 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=90.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC------eEEeee-CcC-CCCCCeeee-EEEE-EeeecCCCCCceEEE
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG------QRRRTK-TKF-RDLNPQWDE-RLEF-LVHDAESMPTEILEI 75 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~-~~~-~t~nP~WnE-~f~f-~v~~~~~l~~~~L~v 75 (983)
.+.|.|+|++|++|+. +.+||||+|.+.+ ++++|+ +++ +++||+||| +|.| .+..++ -..|.|
T Consensus 677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~e---l~~Lr~ 749 (799)
T 2zkm_X 677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE---LASLRV 749 (799)
T ss_dssp CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG---GCEEEE
T ss_pred eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCC---ccEEEE
Confidence 3589999999999985 4689999999943 367999 776 469999999 7999 786653 348999
Q ss_pred EEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 76 NLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 76 ~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
.|||++ ++|||++.+|+..+. ...+|++|.+..+..-..+.|.+++.+.
T Consensus 750 ~V~D~d-----~d~iG~~~ipl~~L~----~G~r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 750 AVMEEG-----NKFLGHRIIPINALN----SGYHHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp EEEETT-----TEEEEEEEEEGGGBC----CEEEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred EEEEeC-----CCccceEeeehhhcC----CCcEEEeccCCCCCCCCceEEEEEEEEE
Confidence 999864 689999999999986 3567999988766544568999988764
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.9e-09 Score=94.55 Aligned_cols=111 Identities=14% Similarity=0.251 Sum_probs=87.3
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCe----EEee-eCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ----RRRT-KTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~----~~~T-~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
...|+|.+.++.--.-+......||||.|.++.. +.+| .++++|..|.|||+|.-++.+ ...|.|.||++
T Consensus 5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-----Gr~l~i~Vfh~ 79 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-----GRVIQIVLMRA 79 (126)
T ss_dssp CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-----TCEEEEEEEEE
T ss_pred CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-----CEEEEEEEEcC
Confidence 3678888877653222222346899999999762 3355 888899999999999999976 58999999964
Q ss_pred CCCCCCCCccEEEEEECcccee----cCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAK----VGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~----~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
.. +|+..++|++.++.. .+...+.|+.|++. |.|++.+.|+
T Consensus 80 a~-----~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~-------Gkl~~~i~~~ 124 (126)
T 1yrk_A 80 AE-----EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ-------AKVLMSVQYF 124 (126)
T ss_dssp TT-----EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS-------CEEEEEEEEE
T ss_pred CC-----CeeeEEEEEHHHHHhhhccCCCceEEEEecccC-------cEEEEEEEEe
Confidence 32 899999999999983 25678899999875 9999999886
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-09 Score=96.66 Aligned_cols=116 Identities=12% Similarity=0.217 Sum_probs=90.8
Q ss_pred CCCcEEEEEEEEeeCCCCCC-CCCCCCeEEEEEECC-e---EEee-eCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEE
Q 002002 4 SCNRKLIVEVCNAKNLMPKD-GQGTASAYVIVDFDG-Q---RRRT-KTKFRDLNPQWDERLEFLVHDAESMPTEILEINL 77 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-~---~~~T-~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V 77 (983)
+....|+|.+.++.-..... .....||||.|.++. . +.+| .++++|..|.|||+|.-++.+ ...|.|.|
T Consensus 7 ~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-----Gr~l~i~V 81 (138)
T 2enj_A 7 GMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-----GRVMQIIV 81 (138)
T ss_dssp SCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-----SCEEEEEE
T ss_pred ccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-----CeEEEEEE
Confidence 34467889887776433322 123689999999976 2 3677 788889999999999999876 58999999
Q ss_pred EeCCCCCCCCCccEEEEEECcccee----cCCeeeEEEEceecCCcceeeeEEEEEEEEecCC
Q 002002 78 YNDKKTGKRSTFLGKVKIAGSTFAK----VGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDED 136 (983)
Q Consensus 78 ~~~~~~~~~d~~lG~~~i~l~~l~~----~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~ 136 (983)
|++. .+|+..++|++.+|.. .+...+.|+.|++. |.|++.+.|..+.
T Consensus 82 fh~a-----~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~-------Gkl~v~i~~~~e~ 132 (138)
T 2enj_A 82 KGKN-----VDLISETTVELYSLAERCRKNNGKTEIWLELKPQ-------GRMLMNARYFLEM 132 (138)
T ss_dssp ECSS-----CSCCEEEEEESHHHHHHHHHTTTCEEEEEECBSS-------CEEEEEEEECCCS
T ss_pred EcCC-----CCeeeEEEEEHHHHHhhhccCCCceEEEEecccC-------cEEEEEEEEEEec
Confidence 9543 2899999999999983 25678999999875 9999999997443
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-09 Score=130.11 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=87.9
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-------EEEEeeeecC-CCCCeeceE-EEEE-EecCC-CEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-------KWVRTRTILD-RFNPRWNEQ-YTWD-VYDPC-TVLT 655 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-------~~~rT~~~~~-t~nP~Wne~-~~~~-v~~~~-~~l~ 655 (983)
.+.|.|+|++|++|+. .++||||.+++.+ +..||+++++ ++||+|||+ |+|. |..+. ..|+
T Consensus 649 ~~~L~V~Visaq~L~~--------~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lr 720 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSD--------KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVR 720 (816)
T ss_dssp CEEEEEEEEEEECCCS--------SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEE
T ss_pred ceEEEEEEEEcccCCC--------CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEE
Confidence 5799999999999953 2589999999854 5789999987 499999998 9998 76554 4899
Q ss_pred EEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEe---cChHHHHHHh
Q 002002 656 IGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTC---SSWLNLIQAY 732 (983)
Q Consensus 656 i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~---~~~~~~~~~~ 732 (983)
|+|||++ |++||.+.|+|+.|..|. +.+||.+..... -..++|.+.+.+.. ..+.++..+-
T Consensus 721 f~V~D~d------------ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~-~~~atLfv~i~~~~~~~~~~~~~~~~~ 784 (816)
T 3qr0_A 721 IIVSEEN------------GKFIGHRVMPLDGIKPGY---RHVPLRNESNRP-LGLASVFAHIVAKDYVSDAFADFADAL 784 (816)
T ss_dssp EEEEETT------------SCEEEEEEEESTTCCCEE---EEEEEECTTSCE-EEEEEEEEEEEEEECCC----------
T ss_pred EEEEecC------------CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCC-CCceEEEEEEEEEecCchhHHHHHHHH
Confidence 9999974 359999999999999874 458888653221 22477777776653 3445666666
Q ss_pred cCCC
Q 002002 733 ATPM 736 (983)
Q Consensus 733 ~~p~ 736 (983)
.+|.
T Consensus 785 ~~p~ 788 (816)
T 3qr0_A 785 LNPI 788 (816)
T ss_dssp ----
T ss_pred hChH
Confidence 6665
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=132.39 Aligned_cols=126 Identities=21% Similarity=0.267 Sum_probs=96.4
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC------EEEEeeeecCC-CCCeece-EEEEE-EecCC-CEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP------KWVRTRTILDR-FNPRWNE-QYTWD-VYDPC-TVLTI 656 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~------~~~rT~~~~~t-~nP~Wne-~~~~~-v~~~~-~~l~i 656 (983)
...|.|+|++|++|+. .++||||+|.+.+ ...||+++.++ +||+||| .|.|. |..+. ..|+|
T Consensus 724 ~~~L~V~Visaq~L~~--------~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf 795 (885)
T 3ohm_B 724 ANALRVKVISGQFLSD--------RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRI 795 (885)
T ss_dssp CEEEEEEEEEEESCCS--------SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEE
T ss_pred ceEEEEEEEEeccCcc--------cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEE
Confidence 3589999999999953 2589999999853 35799999875 9999999 69998 65443 48999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEEe---cChHHHHHHhc
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTC---SSWLNLIQAYA 733 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~---~~~~~~~~~~~ 733 (983)
+|||+| |++||++.|+|+.|..|. +.+||.+..... -..|+|.+.+.+.. ..+.+++.+-.
T Consensus 796 ~V~D~d------------ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~-l~~atLfv~i~~~~~~~~~~~~~~~~l~ 859 (885)
T 3ohm_B 796 AAFEEG------------GKFVGHRILPVSAIRSGY---HYVCLRNEANQP-LCLPALLIYTEASDYIPDDHQDYAEALI 859 (885)
T ss_dssp EEEETT------------TEEEEEEEEETTTCCCEE---EEEEEECTTSCE-EEEEEEEEEEEEEECCCGGGHHHHHHHH
T ss_pred EEEcCC------------ccEEeeEEEEHHHcCCCc---eEEEecCCCCCc-cCceEEEEEEEEEecCCccHHHHHHHHh
Confidence 999975 359999999999998874 457888653221 23588888887763 45667776666
Q ss_pred CCC
Q 002002 734 TPM 736 (983)
Q Consensus 734 ~p~ 736 (983)
+|.
T Consensus 860 ~p~ 862 (885)
T 3ohm_B 860 NPI 862 (885)
T ss_dssp CHH
T ss_pred ChH
Confidence 554
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.86 E-value=6.9e-09 Score=126.73 Aligned_cols=112 Identities=18% Similarity=0.301 Sum_probs=87.0
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEE-CC-----EEEEee-eecC-CCCCeece-EEEE-EEecCC-CEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY-GP-----KWVRTR-TILD-RFNPRWNE-QYTW-DVYDPC-TVL 654 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~-~~-----~~~rT~-~~~~-t~nP~Wne-~~~~-~v~~~~-~~l 654 (983)
..|.|.|+|++|++|+. +++||||.+.+ |. ++.||+ ++++ ++||+||| .|.| .|..+. ..|
T Consensus 676 ~~~~L~V~Visa~~L~~--------~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~L 747 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE--------RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASL 747 (799)
T ss_dssp TCEEEEEEEEEEESCCS--------SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEE
T ss_pred eeeeEEEEEEeccccCc--------cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEE
Confidence 46899999999999952 36899999998 41 357999 8876 58999999 6999 786554 489
Q ss_pred EEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 655 TIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 655 ~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
.|.|||++ |++||.+.|+|+.|..|. +++||....... -..++|.+.+.+.
T Consensus 748 r~~V~D~d------------~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~-~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 748 RVAVMEEG------------NKFLGHRIIPINALNSGY---HHLCLHSESNMP-LTMPALFIFLEMK 798 (799)
T ss_dssp EEEEEETT------------TEEEEEEEEEGGGBCCEE---EEEEEECTTCCE-EEEEEEEEEEEEE
T ss_pred EEEEEEeC------------CCccceEeeehhhcCCCc---EEEeccCCCCCC-CCceEEEEEEEEE
Confidence 99999975 359999999999998874 578888653221 2247777777664
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.53 E-value=8.6e-07 Score=80.02 Aligned_cols=108 Identities=15% Similarity=0.237 Sum_probs=81.7
Q ss_pred cEEEEEEEceecc--ccccccCCCCCCCCCcEEEEEECCEE----EEe-eeecCCCCCeeceEEEEEEecCCCEEEEEEE
Q 002002 587 IGLLEVGIRGATN--LLPVKTKDGTRGTTDAYVVAKYGPKW----VRT-RTILDRFNPRWNEQYTWDVYDPCTVLTIGVF 659 (983)
Q Consensus 587 ~g~L~v~v~~a~~--L~~~~~~d~~~g~sDpy~~~~~~~~~----~rT-~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~ 659 (983)
.+.|+|.+.++.- |++. ....||||.+.+.... .+| .+.++|..|.||+.|.-.|.+ ...|.|.||
T Consensus 5 ~~flRi~~~~~~~~~~~~~------~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vf 77 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAE------DEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLM 77 (126)
T ss_dssp CCEEEEEEEEEECSSCCCS------SSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEE
T ss_pred CccEEeeeccccccccCCc------cccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEE
Confidence 4577777655542 2211 2358999999986532 265 788899999999999999865 669999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEccccc-----CCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLD-----TNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+.. . +|++.+.|++.+|. .+...+.|..|. +.|.|++.++|.
T Consensus 78 h~a-----------~-~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe--------P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 78 RAA-----------E-EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMSVQYF 124 (126)
T ss_dssp EET-----------T-EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEEE
T ss_pred cCC-----------C-CeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEEe
Confidence 632 2 59999999999997 456778888776 359999999884
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-06 Score=80.57 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=83.2
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCE-E---EEe-eeecCCCCCeeceEEEEEEecCCCEEEEEEEe
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK-W---VRT-RTILDRFNPRWNEQYTWDVYDPCTVLTIGVFD 660 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~-~---~rT-~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D 660 (983)
..+.|+|.+.++.-.+-+. . . ....||||.+.+... . .+| .+.++|..|.||+.|.-.|.+ ...|.|.||+
T Consensus 8 m~~flRi~l~~~~~~~~~~-~-~-~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh 83 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQS-C-Q-GEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKG 83 (138)
T ss_dssp CCCCEEEEEEEEECCCCCC-S-C-CCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEEC
T ss_pred cCcceEEEeeccccCCCCC-c-c-cccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEc
Confidence 3457888876665321110 0 0 335899999998653 2 577 778889999999999999865 6699999995
Q ss_pred CCCCCCcCCCCCCCCceeEEEEEEccccc-----CCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 661 NGRYKRDEAGKPGKDVRVGKIRVRLSTLD-----TNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 661 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
.. . +||..+.|++.+|. .+...+.|..|. +.|.|++.++|.
T Consensus 84 ~a-----------~-~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe--------P~Gkl~v~i~~~ 129 (138)
T 2enj_A 84 KN-----------V-DLISETTVELYSLAERCRKNNGKTEIWLELK--------PQGRMLMNARYF 129 (138)
T ss_dssp SS-----------C-SCCEEEEEESHHHHHHHHHTTTCEEEEEECB--------SSCEEEEEEEEC
T ss_pred CC-----------C-CeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEEE
Confidence 32 2 59999999999997 455678898776 359999999984
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=85.00 E-value=1.3 Score=41.82 Aligned_cols=127 Identities=8% Similarity=0.063 Sum_probs=82.6
Q ss_pred CCCcEEEEEEEEeeCCCCC-CC-CCCCCe--EEEEEECC-eEEeeeCcCCCCCCeeeeEEEEEeeecCC----CCCceEE
Q 002002 4 SCNRKLIVEVCNAKNLMPK-DG-QGTASA--YVIVDFDG-QRRRTKTKFRDLNPQWDERLEFLVHDAES----MPTEILE 74 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~-d~-~g~~dP--yv~v~~~~-~~~~T~~~~~t~nP~WnE~f~f~v~~~~~----l~~~~L~ 74 (983)
.+.+.+.|+|.++. |.+. -. .|..+| ||.+.|.. +.+.|.+.. ..+|.+|-+-.|.+.-.+. ++...|.
T Consensus 15 ~gEnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~ 92 (156)
T 2yrb_A 15 RGENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT 92 (156)
T ss_dssp SSCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred CCCcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence 56678889999886 2211 00 123456 56666655 666676665 8999999998888843211 2356788
Q ss_pred EEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 75 INLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 75 v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
++++.-. +..-..||.+.|++..+...........+|....+....-|.|.+.+.+..
T Consensus 93 lELhqa~--g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 93 LEVHQAY--STEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEEC--SSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred EEEEEee--CCCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence 9987542 224568999999999998544444455677665442234688888887753
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.36 E-value=12 Score=37.44 Aligned_cols=75 Identities=13% Similarity=0.248 Sum_probs=50.3
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE---C------------C----eEEeeeCcCCCCCCeeeeEEEEEeee
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF---D------------G----QRRRTKTKFRDLNPQWDERLEFLVHD 64 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~------------~----~~~~T~~~~~t~nP~WnE~f~f~v~~ 64 (983)
....-|.|++.++. +.........|--|++++ + | ..++|.+...+.+|.|+|++.+.+..
T Consensus 24 d~RNdLYVtl~~g~-F~~~~k~~aRNIeV~vevr~~~G~~i~~~I~~~sg~~~~se~~S~V~YHnk~P~w~EtIKi~LP~ 102 (220)
T 3l4c_A 24 DVRNDIYVTLVQGD-FDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQVKQPRWFETVKVAIPI 102 (220)
T ss_dssp --CEEEEEEEEEEE-CCCSSSSSCCCEEEEEEEEETTSCBCCSCEECTTCCSCBSCEECCCCTTCSSCCCCEEEEEEECT
T ss_pred CCcccEEEEeeEeE-ECCCCCCCcceEEEEEEEEcCCCCCcccCEEcCCCCCCceeEEEEEEEcCCCCCceEeEEEeeCh
Confidence 45677888888885 332111223455555554 0 1 35788888889999999999999865
Q ss_pred cCCCCCceEEEEEEeC
Q 002002 65 AESMPTEILEINLYND 80 (983)
Q Consensus 65 ~~~l~~~~L~v~V~~~ 80 (983)
+......|.|.+++.
T Consensus 103 -~~~~~~HLlFtFrH~ 117 (220)
T 3l4c_A 103 -EDVNRSHLRFTFRHR 117 (220)
T ss_dssp -TSSTTEEEEEEEEEC
T ss_pred -hhcCCeEEEEEEEEe
Confidence 345578899998864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 983 | ||||
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-15 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 1e-09 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 5e-06 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 4e-15 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 8e-13 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 4e-15 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 9e-14 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-13 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 7e-11 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-04 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 4e-13 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-08 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 4e-13 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 4e-04 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 2e-12 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-05 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 0.001 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 4e-12 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 1e-04 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 0.002 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 2e-11 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 8e-09 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 3e-11 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-10 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 3e-08 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 7e-05 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 3e-04 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 9e-10 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 1e-04 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 0.003 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 1e-08 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-07 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 3e-07 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 3e-08 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 7e-08 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 3e-07 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-08 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 0.002 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 7e-08 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 1e-04 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 8e-08 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 5e-07 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-04 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 3e-04 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 5e-06 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 2e-04 |
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.3 bits (174), Expect = 2e-15
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 3 ESCNRKLIVEVCNAKNLMPKDGQGTASAYVIV-----DFDGQRRRTKTKFRDLNPQWDER 57
+ +LIV + AK+L ++ + YV + D +RRTKT + L P+W++
Sbjct: 10 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 69
Query: 58 LEFLVHDAESMPTEILEINLYN-DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114
+ +LEI L++ + + S FLG++ I T + + +Y L+
Sbjct: 70 FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA--LLDDEPHWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (132), Expect = 1e-09
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 19/115 (16%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVA-----KYGPKWVRTRTILDRFNPRWNEQ 642
L V I GA +L + + YV + RT+T+ P+WN+
Sbjct: 14 HQLIVTILGAKDLPSREDG----RPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 69
Query: 643 YTWDVYDPCT----VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV 693
+ + +L I ++D R + + + +G+I + L T +
Sbjct: 70 FIYSPVHRREFRERMLEITLWDQARVREE------ESEFLGEILIELETALLDDE 118
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (105), Expect = 5e-06
Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 25/130 (19%)
Query: 425 KLWY------LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSS 478
KLW+ L +T++ +DL R YVK + +
Sbjct: 6 KLWFDKVGHQLIVTILGAKDLPSREDG----RPRNPYVKIYFLPDRSDKNKRRTKTVKKT 61
Query: 479 SANPTWNEDLVFVAAEPFE---PFLVVTVED-----VTNGCSVGHARIQMSTVERRIDDR 530
P WN+ ++ E L +T+ D +G I++ T
Sbjct: 62 L-EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL----- 115
Query: 531 AEPKSRWFNL 540
+ + W+ L
Sbjct: 116 -DDEPHWYKL 124
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 70.9 bits (173), Expect = 4e-15
Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 9/131 (6%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKT-KFRDLNPQWDERLEFLVHDAE 66
L V + +AK L D YV + Q +++ + P+W+E F V +
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT 70
Query: 67 SMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEI 126
+ + DK G +G+ I GS Y + K + KGEI
Sbjct: 71 TELKAKIF-----DKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---EEYKGEI 122
Query: 127 GLKVYYIDEDP 137
+ + + P
Sbjct: 123 WVALSFKPSGP 133
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 64.4 bits (156), Expect = 8e-13
Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 16/139 (11%)
Query: 584 KSPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDR-FNPRWNEQ 642
P G LEV + A L D YV + ++ P WNE
Sbjct: 6 SGPHGTLEVVLVSAKGLEDA----DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNET 61
Query: 643 YTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTV 702
+ + V + T L +FD +D VG+ + L + +
Sbjct: 62 FIFTVSEGTTELKAKIFDKDVG--------TEDDAVGEATIPLEPVFVEGSIPPTA---Y 110
Query: 703 LLPGGAKKMGEIEIAVRFT 721
+ + GEI +A+ F
Sbjct: 111 NVVKDEEYKGEIWVALSFK 129
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (172), Expect = 4e-15
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
L V+V A +L+ D G + + +++ R +T T +++LNP+W++ F + D
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 66
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIG 127
+ E+ ++ D+ K FLGKV I + Y L+ + + KG I
Sbjct: 67 VL----EVTVF-DEDGDKPPDFLGKVAI---PLLSIRDGQPNCYVLKNKDLEQAFKGVIY 118
Query: 128 LKVYYID 134
L++ I
Sbjct: 119 LEMDLIY 125
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.7 bits (162), Expect = 9e-14
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTW 645
+G+L+V + A +LL G +D + + + G ++T T+ NP WN+ +T+
Sbjct: 4 DVGILQVKVLKAADLLAADFS----GKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 59
Query: 646 DVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLP 705
+ D VL + VFD K + +GK+ + L ++ + N Y L
Sbjct: 60 PIKDIHDVLEVTVFDEDGDKPPD--------FLGKVAIPLLSIRDGQP--NCYVLKNKDL 109
Query: 706 GGAKKMGEIEIAVRF 720
A K G I + +
Sbjct: 110 EQAFK-GVIYLEMDL 123
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.6 bits (162), Expect = 1e-13
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEF 60
LIV V +AKNL+P D G + YV + +++TKT LNP+W+E F
Sbjct: 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 73
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFS 120
+ +++ L + ++ D R+ F+G + S + ++ L +
Sbjct: 74 QLKESD--KDRRLSVEIW-DWDLTSRNDFMGSLSFGISELQ--KAGVDGWFKLLSQE--- 125
Query: 121 QIKGE 125
+GE
Sbjct: 126 --EGE 128
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.6 bits (141), Expect = 7e-11
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQ 642
+L V +R A NL+P+ G +D YV K P +T+TI NP WNE
Sbjct: 15 EVLIVVVRDAKNLVPMDPN----GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNET 70
Query: 643 YTWDVYDP--CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRV 693
+ + + + L++ ++D R++ +G + +S L V
Sbjct: 71 FRFQLKESDKDRRLSVEIWDWDLTSRND--------FMGSLSFGISELQKAGV 115
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 23/139 (16%)
Query: 415 ETRAKVYLSPKLW--YLRLTVIQTQDLQP---GSGSEPKVRSPELYVKGQLGAQLFKTGR 469
E R ++Y+ + L + V ++L P S+P V+ + KT
Sbjct: 1 ERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPK--SESKQKTKT 58
Query: 470 TSVGLSPSSSANPTWNEDLVFVAAEPFEP-FLVVTVED---VTNGCSVGHARIQMSTVER 525
S NP WNE F E + L V + D + +G +S +++
Sbjct: 59 IK------CSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK 112
Query: 526 RIDDRAEPKSRWFNLVGDE 544
WF L+ E
Sbjct: 113 ------AGVDGWFKLLSQE 125
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.6 bits (159), Expect = 4e-13
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYV---IVDFDGQRRRTKTKFRDLNPQWDERLEFLV 62
N +L+V + A L D GT+ YV ++ ++ TK + LNP ++E+ F V
Sbjct: 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 63 HDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114
+E + + L + +Y D + +G+ K+ +T G + + L+
Sbjct: 93 PYSE-LGGKTLVMAVY-DFDRFSKHDIIGEFKVPMNTV-DFGHVTEEWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.1 bits (124), Expect = 2e-08
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPK---WVRTRTILDRFNPRWNEQYT 644
L VGI A L + GT+D YV P T+ NP +NEQ+T
Sbjct: 34 NQLLVGIIQAAELPALDMG----GTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 89
Query: 645 WDVYDPC---TVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSL 700
+ V L + V+D R+ + + +G+ +V ++T+D V L
Sbjct: 90 FKVPYSELGGKTLVMAVYDFDRFSKHD--------IIGEFKVPMNTVDFGHVTEEWRDL 140
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.3 bits (158), Expect = 4e-13
Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV--------------DFDGQRRRTKTKFRDLN 51
LI+ + A+NL+P+D G + +V V +RRTK + LN
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 52 PQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYY 111
P+W++ + + E + + LE+ +++ + + FLG+V I S+ + + +Y
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSS-NDFLGEVLIDLSSTSH-LDNTPRWY 134
Query: 112 PLEKRS 117
PL++++
Sbjct: 135 PLKEQT 140
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 30/131 (22%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWV--------------RTRTILD 633
G L + I A NL+P +D G +D +V P RT+ +
Sbjct: 18 GNLIIHILQARNLVP---RDNN-GYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK 73
Query: 634 RFNPRWNEQYTWDVYDPCT----VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD 689
NP WN+ + L + V+D R+ ++ +G++ + LS+
Sbjct: 74 SLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSND--------FLGEVLIDLSSTS 125
Query: 690 TNRVYLNSYSL 700
Y L
Sbjct: 126 HLDNTPRWYPL 136
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 63.2 bits (153), Expect = 2e-12
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQ-----RRRTKTKFRDLNPQWDERLEF 60
L V V A++L D G + YV V+ +++T K N ++E F
Sbjct: 14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 73
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
+ ES+ +E + D + G R+ +G++ +
Sbjct: 74 DIPC-ESLEEISVEFLVL-DSERGSRNEVIGRLVL 106
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.9 bits (103), Expect = 1e-05
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 20/111 (18%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW-----VRTRTILDRFNPRWNEQ 642
L V + A +L G +D YV +T N +NE
Sbjct: 15 NTLTVVVLKARHLPKSDVS----GLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNEL 70
Query: 643 YTWDVYDP---CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT 690
+ +D+ + V D+ R R+E +G++ + + +
Sbjct: 71 FVFDIPCESLEEISVEFLVLDSERGSRNE--------VIGRLVLGATAEGS 113
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 0.001
Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 29/145 (20%)
Query: 417 RAKVYLSPKLWY------LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQL--GAQLFKTG 468
R ++ +S L Y L + V++ + L S + YVK L +
Sbjct: 1 RGELLVS--LCYQSTTNTLTVVVLKARHLPKSDVS----GLSDPYVKVNLYHAKKRISKK 54
Query: 469 RTSVGLSPSSSANPTWNEDLVF--VAAEPFEPFLVVTVEDVTNGCS---VGHARIQMSTV 523
+T V + N +NE VF E + V D G +G + +
Sbjct: 55 KTHV---KKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111
Query: 524 ERRIDDRAE-------PKSRWFNLV 541
E ++W L
Sbjct: 112 GSGGGHWKEICDFPRRQIAKWHMLC 136
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.5 bits (151), Expect = 4e-12
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEF 60
LIV + +L D G + +V + + +T+ K + LNP+++E +
Sbjct: 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116
+ ++ + + L+I+++ D GK + ++G ++ S G +Y K
Sbjct: 74 DIKHSD-LAKKSLDISVW-DYDIGKSNDYIGGCQLGISA---KGERLKHWYECLKN 124
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQ 642
G L VGI +L + +D +V P +T+ NP +NE+
Sbjct: 15 GGLIVGIIRCVHLAAMDANG----YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEE 70
Query: 643 YTWDVYDP---CTVLTIGVFDNGRYKRDE 668
+ +D+ L I V+D K ++
Sbjct: 71 FFYDIKHSDLAKKSLDISVWDYDIGKSND 99
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.1 bits (85), Expect = 0.002
Identities = 20/141 (14%), Positives = 47/141 (33%), Gaps = 19/141 (13%)
Query: 417 RAKVYLSPKLWY------LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQL--GAQLFKTG 468
R K+ +S L Y L + +I+ L + + +VK L
Sbjct: 1 RGKILVS--LMYSTQQGGLIVGIIRCVHLAAMDAN----GYSDPFVKLWLKPDMGKKAKH 54
Query: 469 RTSVGLSPSSSANPTWNEDLVFVAAEPFEPFLVVTVEDVTNGCSVGHARIQMSTVERRID 528
+T + + NP +NE+ + +++ +G + + + I
Sbjct: 55 KTQI---KKKTLNPEFNEEFFYDI--KHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 109
Query: 529 DRAEPKSRWFNLVGDETRPYA 549
+ E W+ + ++ +
Sbjct: 110 AKGERLKHWYECLKNKDKKIE 130
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 2e-11
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
Query: 6 NRKLIVEVCNAKNLMPKDGQG-TASAYVIVDF---DGQRRRTKTKFRDLNPQWDERLEFL 61
+ +V + A+ L D Q T+ Y+ + + +T+ + L+P +DE F
Sbjct: 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80
Query: 62 VHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117
+ L + R +G+V I S SE + E S
Sbjct: 81 GIPYTQIQELALHFTIL-SFDRFSRDDIIGEVLIPLSGIEL--SEGKMLMNREIIS 133
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (126), Expect = 8e-09
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 18/109 (16%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYT 644
V I+ A L D T+D Y+ P V+TR + +P ++E +T
Sbjct: 22 KAFVVNIKEARGLPA---MDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFT 78
Query: 645 WDVYDP----CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD 689
+ L + R+ RD+ +G++ + LS ++
Sbjct: 79 FYGIPYTQIQELALHFTILSFDRFSRDD--------IIGEVLIPLSGIE 119
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (144), Expect = 3e-11
Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAES 67
+L + V +AK K S YV V DGQ ++T+ +P+W + L +V
Sbjct: 7 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSK 66
Query: 68 MPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKV--GSESSVYYPLEKRSVFSQIK-- 123
+ ++ +T K LG + K V L+ +
Sbjct: 67 L-----HFRVW-SHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETI 120
Query: 124 GEI-----GLKV 130
G++ GL++
Sbjct: 121 GDLSICLDGLQL 132
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (135), Expect = 4e-10
Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 21/139 (15%)
Query: 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWD 646
V + AT + D T D YV RTR + NP WNE + +
Sbjct: 5 FTVVVLRATKVTKGAFGD-MLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 647 VYDPCT-VLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLP 705
+ VL I + D D +G +S++ +
Sbjct: 64 LDPNQENVLEITLMDANY---------VMDETLGTATFTVSSMKVGEKKEVPFIFN---- 110
Query: 706 GGAKKMGEIEIAVRFTCSS 724
+E+++ SS
Sbjct: 111 --QVTEMVLEMSLEV-ASS 126
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (122), Expect = 3e-08
Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 17/131 (12%)
Query: 6 NRKLIVEVCNAKNLMP---KDGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLE 59
+ K V V A + D T YV + R+RT+ D+NP W+E E
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61
Query: 60 FLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVF 119
F++ + EI D LG S+ KVG + V + + +
Sbjct: 62 FILDPNQENVLEI----TLMDANYVM-DETLGTATFTVSSM-KVGEKKEVPFIFNQVT-- 113
Query: 120 SQIKGEIGLKV 130
+ + + +
Sbjct: 114 ---EMVLEMSL 121
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (96), Expect = 7e-05
Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 15/129 (11%)
Query: 429 LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDL 488
+ V++ + G+ + + +P+ YV+ + RT ++ NP WNE
Sbjct: 5 FTVVVLRATKVTKGAFGDM-LDTPDPYVELFISTTPDSRKRTRH---FNNDINPVWNETF 60
Query: 489 VFVAAEPFEPFLVVTVEDVTNGCS--VGHARIQMSTVERRIDDRAEPKSRWFNLVGDETR 546
F+ E L +T+ D +G A +S+++ E K F +
Sbjct: 61 EFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVG-----EKKEVPFIF----NQ 111
Query: 547 PYAGRIHLR 555
+ +
Sbjct: 112 VTEMVLEMS 120
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 3e-04
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 22/119 (18%)
Query: 275 LYVRVLKAKRAGNVSNGSL------YAKLVIGTHSIKTKSQADKD------WDQVFAFDK 322
V VL+A + + G + Y +L I T K + W++ F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 323 EGLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEK 381
+ LE+++ +E LGT F + + + +
Sbjct: 65 DPNQENVLEITLMDANYVMDE-----TLGTATFTVSSMKVGEKKE-----VPFIFNQVT 113
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.3 bits (132), Expect = 9e-10
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYV---IVDFDGQRRRTKTKFRDLNPQWDERLEFLV 62
+ +L+V + A +L KD G + YV ++ ++ +TK + LNP ++E +F V
Sbjct: 17 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 76
Query: 63 HDAESMPTEILEINLYNDKKTGKRSTFLGKVKI-AGSTFAKVGSESSVYYPLEK 115
AE + L ++Y D R +G+V + A+ + ++ + +
Sbjct: 77 PLAE-LAQRKLHFSVY-DFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 18/116 (15%)
Query: 275 LYVRVLKAK------RAGNVSNGSLYAKLVIGTHSIKTKSQADK-----DWDQVFAFDKE 323
L VR+L+A G L +TK + F+
Sbjct: 20 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 79
Query: 324 GLNSTSLEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLES 379
L L SV+ ++ + +G V+ D PPD PL W +
Sbjct: 80 ELAQRKLHFSVYDFDRFSRHDL----IGQVVLDNLLELAEQPPDRPL---WRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.5 bits (83), Expect = 0.003
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYT 644
L V I A +L P K +G + K +T+ NP +NE +
Sbjct: 15 YGSDQLVVRILQALDL-PAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 73
Query: 645 WDVYDPC---TVLTIGVFDNGRYKRDE 668
+ V L V+D R+ R +
Sbjct: 74 FSVPLAELAQRKLHFSVYDFDRFSRHD 100
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.1 bits (124), Expect = 1e-08
Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 11/117 (9%)
Query: 272 MPFLYVRVLKAKRAGNVSNGSLYAKLVIGTHSIKTKSQADKD--WDQVFAFDKEGLNSTS 329
M L V V KAK G + Y L + T + W+Q F F+ L+
Sbjct: 1 MSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGL 60
Query: 330 LEVSVWSEEKKENEECTENCLGTVLFDLQEVPKRVPPDSPLAPQWYSLESEKLPGND 386
V VW++ + +GTV L+ + + + +W +L+S+ + +
Sbjct: 61 T-VEVWNKGL-----IWDTMVGTVWIPLRTIRQ---SNEEGPGEWLTLDSQAIMADS 108
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.0 bits (116), Expect = 2e-07
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 13/119 (10%)
Query: 9 LIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESM 68
L V V AK ++ + YV + + T R P W++ F ++ +
Sbjct: 4 LCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRLDLG 59
Query: 69 PTEILEINLYNDKKTGKRSTFLGKVKIA-GSTFAKVGSESSVYYPLEKRSVFSQIKGEI 126
+ + K T +G V I + + L+ +++ + EI
Sbjct: 60 ------LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMA--DSEI 110
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.2 bits (114), Expect = 3e-07
Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 18/140 (12%)
Query: 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWD 646
+ LL VG++ A G + + YV K T + P W + + ++
Sbjct: 1 MSLLCVGVKKAKFD-------GAQEKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFE 52
Query: 647 VYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPG 706
+ LT+ V++ G D VG + + L T+ + LT L
Sbjct: 53 INRLDLGLTVEVWNKGLI---------WDTMVGTVWIPLRTIRQSNEEGPGEWLT-LDSQ 102
Query: 707 GAKKMGEIEIAVRFTCSSWL 726
EI T L
Sbjct: 103 AIMADSEICGTKDPTFHRIL 122
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 51.4 bits (122), Expect = 3e-08
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 27/147 (18%)
Query: 588 GLLEVGIRGATNLLPVKT-------KDGTRGTTDAYVVAKYGP-KWVRTRTILDRFNPRW 639
GLL++ I A +L P D Y+ + +T T +P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 640 NEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL--DTNRVYLNS 697
++++ DV + + + VF + D+ V ++ L + +R + +
Sbjct: 66 HDEFVTDVCNGRKI-ELAVFHDAPIGYDD--------FVANCTIQFEELLQNGSRHFEDW 116
Query: 698 YSLTVLLPGGAKKMGEIEIAVRFTCSS 724
L + G++ + + + SS
Sbjct: 117 IDL--------EPEGKVYVIIDLSGSS 135
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 50.3 bits (119), Expect = 7e-08
Identities = 21/141 (14%), Positives = 51/141 (36%), Gaps = 22/141 (15%)
Query: 428 YLRLTVIQTQDLQP-------GSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSA 480
L++ + + L+P G P+ + Y+ + + G+T+ +
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTAT---KQKTN 61
Query: 481 NPTWNEDLVFVAAEPFEPFLVVTVED-VTNGCSVGHARIQMSTVERRIDDRAEPKSRWFN 539
+P W+++ V + L V + + V + IQ + + + + W +
Sbjct: 62 SPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEEL---LQNGSRHFEDWID 118
Query: 540 LVGDETRPYAGRIHLRACLEG 560
L G++++ L G
Sbjct: 119 LEP------EGKVYVIIDLSG 133
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 48.3 bits (114), Expect = 3e-07
Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 26/136 (19%)
Query: 8 KLIVEVCNAKNLMPKDGQ-----------GTASAYVIVDFDGQR-RRTKTKFRDLNPQWD 55
L +++C A +L P Y+ ++ D R +T TK + +P W
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 56 ERLEFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSES-SVYYPLE 114
+ V + + E+ +++D G I + GS + LE
Sbjct: 67 DEFVTDVCNGRKI-----ELAVFHDAPIGYDDFV-ANCTIQFEELLQNGSRHFEDWIDLE 120
Query: 115 KRSVFSQIKGEIGLKV 130
+G++ + +
Sbjct: 121 P-------EGKVYVII 129
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.7 bits (123), Expect = 3e-08
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEF 60
KL V + AKNL D G + YV + ++++T K LNP ++E F
Sbjct: 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
V + + + + + D ++ +GKV +
Sbjct: 84 EVPFEQ-IQKVQVVVTVL-DYDKIGKNDAIGKVFV 116
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.5 bits (86), Expect = 0.002
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 20/111 (18%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQ 642
G L V I A NL + G +D YV K +T + NP +NE
Sbjct: 25 GKLTVVILEAKNLKKMDVG----GLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNES 80
Query: 643 YTWDVYDP---CTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDT 690
++++V + + V D + +++ +GK+ V ++
Sbjct: 81 FSFEVPFEQIQKVQVVVTVLDYDKIGKND--------AIGKVFVGYNSTGA 123
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.3 bits (119), Expect = 7e-08
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 10/115 (8%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIV----DFDGQRRRTKTKFRDLNPQWDERLEFL 61
+L V A + G YV +T K R L+ W+E L
Sbjct: 25 KAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLP 81
Query: 62 VHDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116
+ + E +PT L + L R + G++++ V ++ + L+
Sbjct: 82 LAEEE-LPTATLTLTLR-TCDRFSRHSVAGELRLGLDGT-SVPLGAAQWGELKTS 133
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 15/117 (12%), Positives = 25/117 (21%), Gaps = 16/117 (13%)
Query: 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKW----VRTRTILDRFNPRWNEQY 643
L V A G D YV + +T + + W E
Sbjct: 26 AELFVTRLEAVTSNH-------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGL 78
Query: 644 TWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSL 700
+ + R + G++R+ L L
Sbjct: 79 VLPLAEEELPTATLTLTLRTCDR-----FSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.2 bits (119), Expect = 8e-08
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEF 60
L V + A NL D G + YV ++R+T K LNP ++E L F
Sbjct: 19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 78
Query: 61 LVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
V ES+ L I + D + +G ++
Sbjct: 79 DVAP-ESVENVGLSIAVV-DYDCIGHNEVIGVCRV 111
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.8 bits (113), Expect = 5e-07
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 7 RKLIVEVCNAKNL--MPKDGQGTASAYVIVDF-----DGQRRRTKT-KFRDLNPQWDERL 58
+L V + + + L + K+ VIV+ D R+T NP+WD
Sbjct: 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63
Query: 59 EFLVHDAESMPTEILEINLYNDKKTGKRSTFLGKVKI 95
EF V P L + D + ++ F+G+ I
Sbjct: 64 EFEVTV----PDLALVRFMVEDYDSSSKNDFIGQSTI 96
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.7 bits (92), Expect = 2e-04
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 590 LEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY-----GPKWVRTRTI-LDRFNPRWNEQY 643
L V I L P K+ D V+ + +T I + FNPRW+ ++
Sbjct: 6 LRVRIISGQQL-PKVNKNKN-SIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63
Query: 644 TWDVYDPCT-VLTIGVFDNGRYKRD 667
++V P ++ V D ++
Sbjct: 64 EFEVTVPDLALVRFMVEDYDSSSKN 88
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.4 bits (91), Expect = 3e-04
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 13/123 (10%)
Query: 429 LRLTVIQTQDLQPGSGSEPKVRSPELYVKGQLGAQLFKTGRTSVGLSPSSSANPTWNEDL 488
LR+ +I Q L + + K + V ++ TG + ++ NP W+ +
Sbjct: 6 LRVRIISGQQLPKVNKN--KNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63
Query: 489 VFVAAEPFEPFLVVTVED---VTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDET 545
F P + VED + +G + I +++ + R +L+
Sbjct: 64 EFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSL--------KQGYRHVHLLSKNG 115
Query: 546 RPY 548
+
Sbjct: 116 DQH 118
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.7 bits (105), Expect = 5e-06
Identities = 15/133 (11%), Positives = 41/133 (30%), Gaps = 20/133 (15%)
Query: 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQR-----RRTKTKFRDLNPQWDERLEFLV 62
++ +L +D + + V + K + P+W + +
Sbjct: 6 RISFNSYELGSLQAEDD--ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI 63
Query: 63 HDAESMPTEILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQI 122
++ ++I L + +G +A K ++ + L+ +
Sbjct: 64 YEGRV-----IQIVLMRAAEDPMSEVTVGVSVLA-ERCKKNNGKAEFWLDLQPQ------ 111
Query: 123 KGEIGLKVYYIDE 135
++ + V Y E
Sbjct: 112 -AKVLMCVQYFLE 123
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.1 bits (93), Expect = 2e-04
Identities = 14/137 (10%), Positives = 33/137 (24%), Gaps = 25/137 (18%)
Query: 589 LLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQY 643
L + + L ++ +D + K + P W +
Sbjct: 4 FLRISFN-SYELGSLQAEDDAS---QPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTF 59
Query: 644 TWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703
+ V+ I + +V VG + N L
Sbjct: 60 DAHI-YEGRVIQIVLMRAAEDPM-------SEVTVGVSVLAERCKKNNGKAEFWLDL--- 108
Query: 704 LPGGAKKMGEIEIAVRF 720
+ ++ + V++
Sbjct: 109 -----QPQAKVLMCVQY 120
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 983 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.84 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.82 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.8 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.78 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.74 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.73 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.72 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.72 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.72 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.7 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.7 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.7 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.68 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.68 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.67 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.67 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.66 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.66 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.66 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.65 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.62 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.62 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.6 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.58 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.58 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.58 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.57 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.55 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.54 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.54 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.54 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.54 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.54 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.53 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.51 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.43 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.43 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.4 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.32 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.21 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 89.99 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 87.03 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.9e-21 Score=180.94 Aligned_cols=122 Identities=26% Similarity=0.443 Sum_probs=109.1
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCC
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRY 664 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~ 664 (983)
.++|.|+|+|++|+||+++ |. .|++||||++++++...+|+++.+|.||.|||+|.|.+.++...|.|+|||++..
T Consensus 3 ~~~G~L~V~v~~A~~L~~~---d~-~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~ 78 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAA---DF-SGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 78 (126)
T ss_dssp CCSEEEEEEEEEEESCCCS---SS-SSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred CccEEEEEEEEEeECCCCC---CC-CCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCC
Confidence 4689999999999999765 56 8899999999999999999999999999999999999999889999999999988
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 665 KRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 665 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+ +|++||++.|+|+++..+. .+||+|......+ +.+|+|++++.|.
T Consensus 79 ~--------~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~i 124 (126)
T d2ep6a1 79 K--------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLI 124 (126)
T ss_dssp E--------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEE
T ss_pred c--------CcceEEEEEEEHHHCCCCC--ceEEEccccCCCC-ceeEEEEEEEEEE
Confidence 7 7889999999999998877 6899887665544 3469999999885
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.5e-20 Score=176.07 Aligned_cols=122 Identities=26% Similarity=0.491 Sum_probs=108.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTG 84 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~ 84 (983)
..+.|.|+|++|++|+.+|..|++||||++.+++++++|++++++.||.|||+|.|.+..+ ...|.|+|||.+..+
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~L~i~V~d~~~~~ 79 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI----HDVLEVTVFDEDGDK 79 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT----TCEEEEEEEEEETTE
T ss_pred ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc----CceeEEEEEEccCCc
Confidence 4578999999999999999999999999999999999999999999999999999999775 578999999887775
Q ss_pred CCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 85 KRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
+|++||++.+++..+. .+ ...|+.|......++.+|+|+|++.+..
T Consensus 80 -~d~~lG~~~i~l~~l~-~~--~~~~~~l~~~~~~~~~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 80 -PPDFLGKVAIPLLSIR-DG--QPNCYVLKNKDLEQAFKGVIYLEMDLIY 125 (126)
T ss_dssp -EEEECCBCEEEGGGCC-SS--CCEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred -CcceEEEEEEEHHHCC-CC--CceEEEccccCCCCceeEEEEEEEEEEE
Confidence 7899999999999986 22 3579999888777778899999998864
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.80 E-value=2e-19 Score=170.68 Aligned_cols=125 Identities=21% Similarity=0.290 Sum_probs=109.3
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcC-CCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCC
Q 002002 4 SCNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKF-RDLNPQWDERLEFLVHDAESMPTEILEINLYNDKK 82 (983)
Q Consensus 4 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~ 82 (983)
++.+.|.|+|++|++|+.+|..|++||||+++++++.++|++++ +++||.|||+|.|.+... ...|.|+|||++.
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~----~~~L~v~V~d~d~ 82 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG----TTELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS----CCEEEEEECCSSS
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc----cceEEEEEEEecC
Confidence 56689999999999999999999999999999999999999987 589999999999999875 5679999998887
Q ss_pred CCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEecCC
Q 002002 83 TGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYIDED 136 (983)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~~~ 136 (983)
.+ +|++||++.|+|.++...+.....|+.|...+ +.+|+|+|.+.|.+..
T Consensus 83 ~~-~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~---~~~G~i~l~l~~~p~~ 132 (136)
T d1wfja_ 83 GT-EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE---EYKGEIWVALSFKPSG 132 (136)
T ss_dssp CT-TTCCSEEEEEESHHHHHHSEEEEEEEEEEETT---EEEEEEEEEEEEEECC
T ss_pred CC-CCCEEEEEEEEhHHhcccCCcCcEEEEecCCC---ccCEEEEEEEEEEeCC
Confidence 76 89999999999999875666678899997642 4679999999998543
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.78 E-value=6.3e-19 Score=167.21 Aligned_cols=123 Identities=25% Similarity=0.326 Sum_probs=105.9
Q ss_pred CCcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecC-CCCCeeceEEEEEEecCCCEEEEEEEeCCC
Q 002002 585 SPIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILD-RFNPRWNEQYTWDVYDPCTVLTIGVFDNGR 663 (983)
Q Consensus 585 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~-t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~ 663 (983)
.+.|.|+|+|++|++|+.+ |. .|++||||++++++...+|+++++ ++||.|||+|.|.+.++...|+|+|||+|.
T Consensus 7 ~p~G~L~V~v~~a~~L~~~---d~-~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~ 82 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDA---DF-LNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSC---CS-SCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred CCcEEEEEEEEEeeCCCCC---CC-CCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecC
Confidence 4789999999999999654 66 899999999999999999999984 889999999999999888899999999999
Q ss_pred CCCcCCCCCCCCceeEEEEEEcccccC-CCeEEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 664 YKRDEAGKPGKDVRVGKIRVRLSTLDT-NRVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 664 ~~~~~~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
.+ +|++||++.|+|.++.. +.....||+|... + +..|+|++++.|.+.
T Consensus 83 ~~--------~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~---~-~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 83 GT--------EDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---E-EYKGEIWVALSFKPS 131 (136)
T ss_dssp CT--------TTCCSEEEEEESHHHHHHSEEEEEEEEEEET---T-EEEEEEEEEEEEEEC
T ss_pred CC--------CCCEEEEEEEEhHHhcccCCcCcEEEEecCC---C-ccCEEEEEEEEEEeC
Confidence 87 78899999999999753 4445678888632 2 456999999999753
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.1e-18 Score=160.13 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=101.7
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC---EEEEeeeecCCCCCeeceEEEEEEecCCC-EEEEEEEeCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP---KWVRTRTILDRFNPRWNEQYTWDVYDPCT-VLTIGVFDNG 662 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~---~~~rT~~~~~t~nP~Wne~~~~~v~~~~~-~l~i~v~D~d 662 (983)
.+.|+|+|++|+||+.....|. .|++||||++.+++ +..||+++.++.||.|||+|.|.+.++.. .|.|+|||++
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~-~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d 80 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDM-LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHH-HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred CcEEEEEEEEccCCCCcccccc-CCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECC
Confidence 4689999999999976544455 68999999999975 67899999999999999999999987654 8999999998
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 663 RYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 663 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
.. .|++||++.|+|++|..+.....||+|... ..|+|++.+++.
T Consensus 81 ~~---------~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~g~i~~~l~~~ 124 (126)
T d1rlwa_ 81 YV---------MDETLGTATFTVSSMKVGEKKEVPFIFNQV------TEMVLEMSLEVA 124 (126)
T ss_dssp SS---------CCEEEEEEEEEGGGSCTTCEEEEEEEETTT------EEEEEEEEEECC
T ss_pred CC---------CCCeEEEEEEEHHHccCCCeEEEEEEccCC------CeEEEEEEEEEE
Confidence 75 467999999999999999999999999532 358888888764
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.73 E-value=2e-17 Score=156.29 Aligned_cols=116 Identities=20% Similarity=0.353 Sum_probs=99.6
Q ss_pred CcEEEEEEEEeeCCCCCC-----------CCCCCCeEEEEEECCeE-EeeeCcCCCCCCeeeeEEEEEeeecCCCCCceE
Q 002002 6 NRKLIVEVCNAKNLMPKD-----------GQGTASAYVIVDFDGQR-RRTKTKFRDLNPQWDERLEFLVHDAESMPTEIL 73 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d-----------~~g~~dPyv~v~~~~~~-~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L 73 (983)
++.|+|+|++|++|++.+ ..+.+||||++.++++. .+|+++.++.||.|||+|.|.+.+ ...|
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-----~~~l 79 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-----GRKI 79 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-----ECEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-----CCce
Confidence 578999999999999854 45789999999999855 689999999999999999999975 3689
Q ss_pred EEEEEeCCCCCCCCCccEEEEEECccceec-CCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 74 EINLYNDKKTGKRSTFLGKVKIAGSTFAKV-GSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 74 ~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
.|+|||.+.++ +|++||++.|+++++... +...+.|++|++ .|+|++.+.+.+
T Consensus 80 ~i~V~d~~~~~-~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p-------~G~v~l~v~~~~ 133 (136)
T d1gmia_ 80 ELAVFHDAPIG-YDDFVANCTIQFEELLQNGSRHFEDWIDLEP-------EGKVYVIIDLSG 133 (136)
T ss_dssp EEEEEECCSSS-SCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-------SCEEEEEEEEEE
T ss_pred EEEEEEecCCC-CceeEEEEEEEHHHhhhcCCcceeEEEeCCC-------CcEEEEEEEEEe
Confidence 99999888776 899999999999998744 355789999975 399999988764
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1e-17 Score=156.54 Aligned_cols=117 Identities=24% Similarity=0.383 Sum_probs=99.1
Q ss_pred CcEEEEEEEEeeCCCCC---CCCCCCCeEEEEEECC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 6 NRKLIVEVCNAKNLMPK---DGQGTASAYVIVDFDG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~---d~~g~~dPyv~v~~~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
.++|.|+|++|+||+.. |..|++||||++.+++ ++++|+++.++.||.|||+|.|.+.... ...|.|.|||
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~---~~~L~v~V~d 78 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ---ENVLEITLMD 78 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS---CCEEEEEEEE
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcc---cCcEEEEEEE
Confidence 68999999999999874 3457899999999975 7889999999999999999999997653 5789999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
.+.. +|++||++.++|..+. .+.....||+|.+. ..|+|.+.+.+.
T Consensus 79 ~d~~--~d~~lG~~~i~L~~l~-~~~~~~~~~~L~~~-----~~g~i~~~l~~~ 124 (126)
T d1rlwa_ 79 ANYV--MDETLGTATFTVSSMK-VGEKKEVPFIFNQV-----TEMVLEMSLEVA 124 (126)
T ss_dssp CCSS--CCEEEEEEEEEGGGSC-TTCEEEEEEEETTT-----EEEEEEEEEECC
T ss_pred CCCC--CCCeEEEEEEEHHHcc-CCCeEEEEEEccCC-----CeEEEEEEEEEE
Confidence 7654 6899999999999987 56778899999765 248888877653
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.7e-17 Score=154.64 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=100.4
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGK 85 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~ 85 (983)
..+|.|+|++|++|+.++..+.+||||++.++++.++|++++++.||.|||.|.|.+.. ...|.|+|||++.++
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-----~~~l~~~V~d~d~~~- 78 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-----VSKLHFRVWSHQTLK- 78 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-----TCEEEEEEEECCSSS-
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-----cceeEEEEEEccCCC-
Confidence 37899999999999998888999999999999999999999999999999999999864 468999999988886
Q ss_pred CCCccEEEEEECcccee--cCC--eeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 86 RSTFLGKVKIAGSTFAK--VGS--ESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 86 ~d~~lG~~~i~l~~l~~--~~~--~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
+|++||++.++|.++.. .+. ....|+.|..........|+|.+.+.+.
T Consensus 79 ~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~ 130 (133)
T d2nq3a1 79 SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL 130 (133)
T ss_dssp CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeE
Confidence 89999999999998763 222 2344555655555556789999988654
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.72 E-value=4.4e-17 Score=153.92 Aligned_cols=119 Identities=21% Similarity=0.312 Sum_probs=99.9
Q ss_pred cEEEEEEEceecccccccc--------CCCCCCCCCcEEEEEECCEE-EEeeeecCCCCCeeceEEEEEEecCCCEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKT--------KDGTRGTTDAYVVAKYGPKW-VRTRTILDRFNPRWNEQYTWDVYDPCTVLTIG 657 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~--------~d~~~g~sDpy~~~~~~~~~-~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~ 657 (983)
.|.|+|+|++|++|++++. ... .+.+||||++++++.. .+|+++.++.||.|||+|.|++.+ ...|+|+
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~-~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~ 82 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQ-TFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELA 82 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCC-CCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCC-CCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEE
Confidence 5899999999999987531 112 6789999999999854 589999999999999999999975 4689999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCC--CeEEEEEEeeecCCCCCccceEEEEEEEEEec
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTN--RVYLNSYSLTVLLPGGAKKMGEIEIAVRFTCS 723 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~~~ 723 (983)
|||++..+ +|++||++.|+|+++..+ .....|++|. +.|+|++.+.|+..
T Consensus 83 V~d~~~~~--------~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 83 VFHDAPIG--------YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EEECCSSS--------SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred EEEecCCC--------CceeEEEEEEEHHHhhhcCCcceeEEEeCC--------CCcEEEEEEEEEeC
Confidence 99999987 788999999999998643 3567899885 24999999998754
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=1.5e-16 Score=149.17 Aligned_cols=119 Identities=18% Similarity=0.284 Sum_probs=95.4
Q ss_pred cEEEEEEEEeeCCCC--CCCCCCCCeEEEEEEC-----CeEEeeeCcCC-CCCCeeeeEEEEEeeecCCCCCceEEEEEE
Q 002002 7 RKLIVEVCNAKNLMP--KDGQGTASAYVIVDFD-----GQRRRTKTKFR-DLNPQWDERLEFLVHDAESMPTEILEINLY 78 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~--~d~~g~~dPyv~v~~~-----~~~~~T~~~~~-t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~ 78 (983)
.+|.|+|++|++|+. .+.+|++||||++++. .++++|+++++ ++||.|||+|.|.+..+. ...|.|+||
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~---~~~L~~~V~ 80 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD---LALVRFMVE 80 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGG---GCEEEEEEE
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcch---hceEEEEEE
Confidence 579999999999975 4567889999999983 37889998765 479999999999987653 467999999
Q ss_pred eCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 79 NDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 79 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
|.+..+ +|++||++.|+|..+. ....|++|.+..+.....|.|.+++.+.
T Consensus 81 D~d~~~-~d~~iG~~~i~l~~l~----~g~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 81 DYDSSS-KNDFIGQSTIPWNSLK----QGYRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp ECCTTT-CCEEEEEEEEEGGGBC----CEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EecCCC-CCcEEEEEEEEEeccC----CCCEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 988876 8999999999999986 2457999987766555668899998765
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=7.1e-17 Score=151.71 Aligned_cols=121 Identities=16% Similarity=0.164 Sum_probs=96.0
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKR 666 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~ 666 (983)
.+.|.|+|++|++|+.. +. .+++||||++.++++..||++++++.||.|||.|.|++. +...|+|+|||++.++
T Consensus 5 ~~~L~v~v~~A~~~~~~---~~-~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~-~~~~l~~~V~d~d~~~- 78 (133)
T d2nq3a1 5 KSQLQITVISAKLKENK---KN-WFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLK- 78 (133)
T ss_dssp CEEEEEEEEEEEECCCC------CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSS-
T ss_pred ceEEEEEEEEeECCCcC---CC-CCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEE-ecceeEEEEEEccCCC-
Confidence 47899999999999654 44 678999999999999999999999999999999999986 4678999999999988
Q ss_pred cCCCCCCCCceeEEEEEEccccc---CCCeEEEEEEeeec-CCCCCccceEEEEEEEE
Q 002002 667 DEAGKPGKDVRVGKIRVRLSTLD---TNRVYLNSYSLTVL-LPGGAKKMGEIEIAVRF 720 (983)
Q Consensus 667 ~~~~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~-~~~g~~~~G~l~l~~~f 720 (983)
+|++||++.|+|+++. .+.....+++|... ..++....|+|.+.+.+
T Consensus 79 -------~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 79 -------SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 129 (133)
T ss_dssp -------CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred -------CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence 7889999999999874 23322334443322 23445567999887754
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=5.4e-17 Score=152.77 Aligned_cols=103 Identities=26% Similarity=0.424 Sum_probs=89.9
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEE-----CCEEEEeeeecCCCCCeeceEEEEEEecC--CCEEEEEEEe
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY-----GPKWVRTRTILDRFNPRWNEQYTWDVYDP--CTVLTIGVFD 660 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~-----~~~~~rT~~~~~t~nP~Wne~~~~~v~~~--~~~l~i~v~D 660 (983)
+.|.|+|++|+||+++ |. .|.+||||++.+ +....+|+++.+|.||.|||.|.|.+.++ ...|.|+|||
T Consensus 15 ~~L~V~V~~a~~L~~~---d~-~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d 90 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPM---DP-NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWD 90 (132)
T ss_dssp SEEEEEEEEEESCCCC---ST-TSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEE
T ss_pred CEEEEEEEeeeCCCCC---CC-CCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEe
Confidence 4799999999999776 55 788999999998 44678999999999999999999998754 3489999999
Q ss_pred CCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 661 NGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 661 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
+|..+ +|++||.+.|+|+++..+. ..+||+|...
T Consensus 91 ~d~~~--------~d~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 124 (132)
T d1a25a_ 91 WDLTS--------RNDFMGSLSFGISELQKAG-VDGWFKLLSQ 124 (132)
T ss_dssp CCSSS--------CCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred cCCCC--------CCcEeEEEEEeHHHcCCCC-CCeEEECCCC
Confidence 99987 7889999999999987654 5789999764
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=8.6e-17 Score=151.34 Aligned_cols=106 Identities=28% Similarity=0.522 Sum_probs=91.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE-----CCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
.+.|.|+|++|+||+++|..|.+||||++++ +..+++|++++++.||.|||+|.|.+.... ....|.|.|||.
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~L~i~V~d~ 91 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD--KDRRLSVEIWDW 91 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG--GGCEEEEEEEEC
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccc--cCCEEeEEEEec
Confidence 4789999999999999999999999999999 346889999999999999999999987542 245799999998
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
+..+ +|++||++.|++.++.. .....||+|.+.
T Consensus 92 d~~~-~d~~iG~~~i~l~~l~~--~~~~~W~~L~~~ 124 (132)
T d1a25a_ 92 DLTS-RNDFMGSLSFGISELQK--AGVDGWFKLLSQ 124 (132)
T ss_dssp CSSS-CCEEEEEEEEEHHHHTT--CCEEEEEECBCH
T ss_pred CCCC-CCcEeEEEEEeHHHcCC--CCCCeEEECCCC
Confidence 8876 88999999999999863 345789999765
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=2.2e-16 Score=148.08 Aligned_cols=120 Identities=19% Similarity=0.274 Sum_probs=92.5
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEE-----CCEEEEeeeecCC-CCCeeceEEEEEEecCC-CEEEEEEEe
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY-----GPKWVRTRTILDR-FNPRWNEQYTWDVYDPC-TVLTIGVFD 660 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~-----~~~~~rT~~~~~t-~nP~Wne~~~~~v~~~~-~~l~i~v~D 660 (983)
..|.|+|++|++|+.++ .+. .|++||||++++ +....||++++++ +||.|||+|+|.+..+. ..|.|+|||
T Consensus 4 ~~l~V~Vi~a~~L~~~~-~~~-~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D 81 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVN-KNK-NSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 81 (131)
T ss_dssp EEEEEEEEEEESCCCCC-------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred EEEEEEEEEeeCCCCCC-CCC-CCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEE
Confidence 47999999999997542 344 788999999998 2478899998765 79999999999986654 489999999
Q ss_pred CCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 661 NGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 661 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+|..+ +|++||++.|+|+++..|. +|+||....... -..|+|.+.+.+.
T Consensus 82 ~d~~~--------~d~~iG~~~i~l~~l~~g~---~~~~L~~~~g~~-~~~~~L~v~i~~~ 130 (131)
T d1qasa2 82 YDSSS--------KNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQ-HPSATLFVKISIQ 130 (131)
T ss_dssp CCTTT--------CCEEEEEEEEEGGGBCCEE---EEEEEECTTSCE-EEEEEEEEEEEEE
T ss_pred ecCCC--------CCcEEEEEEEEEeccCCCC---EEEECCCCCcCC-CCCCEEEEEEEEE
Confidence 99987 7889999999999998764 689997653222 1346777776653
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.9e-16 Score=151.05 Aligned_cols=103 Identities=31% Similarity=0.399 Sum_probs=90.7
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEE---CCEEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEEe
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY---GPKWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVFD 660 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~---~~~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~D 660 (983)
.+.|.|+|++|+||+++ |. .|.+||||++.+ +....+|++++++.||.|||.|.|++... ...|.|+|||
T Consensus 33 ~~~L~V~V~~a~~L~~~---~~-~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d 108 (143)
T d1rsya_ 33 NNQLLVGIIQAAELPAL---DM-GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp TTEEEEEEEEEESCCCC---ST-TSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred CCEEEEEEEEccCCCCC---CC-CCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence 35899999999999765 55 789999999998 44678999999999999999999988542 4589999999
Q ss_pred CCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 661 NGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 661 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
++..+ ++++||.+.|+|.++..+....+||+|.
T Consensus 109 ~d~~~--------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 109 FDRFS--------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCSSS--------CCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred cCCCC--------CCcEEEEEEEEchhccCCCCCccEEeCC
Confidence 99987 6889999999999999888889999986
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=4.1e-16 Score=144.38 Aligned_cols=117 Identities=20% Similarity=0.256 Sum_probs=92.4
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECCEEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCC
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGPKWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKR 666 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~ 666 (983)
++.|.|+|.+|++|.++ +++||||++++++...+|.++++ .||.|||.|.|++.++...|.|+|||++..
T Consensus 1 ~~~L~V~v~~a~~l~~~-------~~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-- 70 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQ-------EKFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLI-- 70 (128)
T ss_dssp CEEEEEEEEEEECSSCG-------GGCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSS--
T ss_pred CeEEEEEEEEEECCCCC-------CCcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCc--
Confidence 36899999999999653 46899999999999999998864 599999999999999988999999999875
Q ss_pred cCCCCCCCCceeEEEEEEcccccC--CCeEEEEEEeeecC--CCC------CccceEEEEEEEE
Q 002002 667 DEAGKPGKDVRVGKIRVRLSTLDT--NRVYLNSYSLTVLL--PGG------AKKMGEIEIAVRF 720 (983)
Q Consensus 667 ~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~--~~g------~~~~G~l~l~~~f 720 (983)
.|++||++.|+|+++.. +.....||+|.... ..| ......|.+.++|
T Consensus 71 -------~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 71 -------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp -------CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred -------CCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 47799999999999853 23456899996532 111 1123567777776
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=2.8e-16 Score=145.59 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=85.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCCCCCCCC
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDKKTGKRS 87 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~~~~~~d 87 (983)
.|+|+|.+|++|.+++ ++||||++++++++.+|++++ +.||.|||+|.|.+..+ ...|.|+|||.+.. +|
T Consensus 3 ~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~----~~~L~v~V~d~~~~--~d 72 (128)
T d2cjta1 3 LLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL----DLGLTVEVWNKGLI--WD 72 (128)
T ss_dssp EEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC----SSEEEEEEEECCSS--CE
T ss_pred EEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc----cceEEEEEEeCCCc--CC
Confidence 8999999999999876 689999999999999999886 56999999999999876 57899999987654 68
Q ss_pred CccEEEEEECccceec-CCeeeEEEEceecC
Q 002002 88 TFLGKVKIAGSTFAKV-GSESSVYYPLEKRS 117 (983)
Q Consensus 88 ~~lG~~~i~l~~l~~~-~~~~~~w~~L~~~~ 117 (983)
++||++.|+|+++... ......||+|....
T Consensus 73 ~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~ 103 (128)
T d2cjta1 73 TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQA 103 (128)
T ss_dssp EEEEEEEEEGGGSCBCSSCCCCEEEECBC--
T ss_pred cceEEEEEEehhhccCCCCCCCeeEECCccc
Confidence 9999999999998743 34466899997653
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=1.3e-16 Score=149.51 Aligned_cols=110 Identities=22% Similarity=0.378 Sum_probs=92.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC---CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD---GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
..++|.|+|++|+||+.++..|.+||||++++. .++++|++++++.||.|||+|.|.+... ++....|.|+|||.+
T Consensus 16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~-~~~~~~L~v~V~d~~ 94 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA-ELAQRKLHFSVYDFD 94 (130)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGG-GGSSCCCEEEEEECC
T ss_pred CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchH-HcCCCeEEEEEEEcC
Confidence 467999999999999999999999999999993 3678999999999999999999998653 344678999999988
Q ss_pred CCCCCCCccEEEEEECcc-ceecCCeeeEEEEceec
Q 002002 82 KTGKRSTFLGKVKIAGST-FAKVGSESSVYYPLEKR 116 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~-l~~~~~~~~~w~~L~~~ 116 (983)
.++ +|++||++.|++.. +.........||+|.+.
T Consensus 95 ~~~-~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~ 129 (130)
T d1dqva1 95 RFS-RHDLIGQVVLDNLLELAEQPPDRPLWRDILEG 129 (130)
T ss_dssp SSS-CCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred CCC-CCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence 776 89999999998654 33334455679999875
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=1.4e-17 Score=159.22 Aligned_cols=110 Identities=27% Similarity=0.508 Sum_probs=93.6
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC--------------eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCc
Q 002002 6 NRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG--------------QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTE 71 (983)
Q Consensus 6 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--------------~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~ 71 (983)
.+.|.|+|++|+||+++|..|.+||||++++.. ++++|+++++++||.|||+|.|.+.....+...
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence 368999999999999999999999999999832 346899999999999999999985443344567
Q ss_pred eEEEEEEeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecC
Q 002002 72 ILEINLYNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRS 117 (983)
Q Consensus 72 ~L~v~V~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 117 (983)
.|.|.|||.+.++ ++++||++.|+|..+. .+.....||+|++++
T Consensus 97 ~L~i~V~d~d~~~-~~~~lG~~~i~L~~l~-~~~~~~~W~~L~~~~ 140 (142)
T d1rh8a_ 97 TLEVTVWDYDRFS-SNDFLGEVLIDLSSTS-HLDNTPRWYPLKEQT 140 (142)
T ss_dssp EEEEEEEEECSSS-CEEEEEEEEEETTSCG-GGTTCCEEEECBCCC
T ss_pred EEEEEEEEecCCC-CCeeeEEEEEEhHHcC-CCCCceEEEECcCcC
Confidence 8999999988876 7899999999999987 445677999999875
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=2.1e-16 Score=150.87 Aligned_cols=108 Identities=24% Similarity=0.385 Sum_probs=93.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE---CCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF---DGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
....|.|+|++|+||++++..|.+||||++++ +.++++|++++++.||.|||+|.|.+... .+....|.|.|||.+
T Consensus 32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~-~l~~~~L~i~V~d~d 110 (143)
T d1rsya_ 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS-ELGGKTLVMAVYDFD 110 (143)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHH-HHTTCEEEEEEEECC
T ss_pred CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEee-ccCCceEEEEEEEcC
Confidence 45789999999999999999999999999998 34778999999999999999999988653 233678999999988
Q ss_pred CCCCCCCccEEEEEECccceecCCeeeEEEEcee
Q 002002 82 KTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEK 115 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 115 (983)
..+ ++++||++.|+|.++. .+.....||+|+.
T Consensus 111 ~~~-~~~~iG~~~i~L~~~~-~~~~~~~W~~L~s 142 (143)
T d1rsya_ 111 RFS-KHDIIGEFKVPMNTVD-FGHVTEEWRDLQS 142 (143)
T ss_dssp SSS-CCEEEEEEEEEGGGCC-CSSCEEEEEECBC
T ss_pred CCC-CCcEEEEEEEEchhcc-CCCCCccEEeCCC
Confidence 776 7889999999999986 4566789999974
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=1.2e-16 Score=152.54 Aligned_cols=104 Identities=26% Similarity=0.386 Sum_probs=89.1
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEECC--------------EEEEeeeecCCCCCeeceEEEEEEec----
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP--------------KWVRTRTILDRFNPRWNEQYTWDVYD---- 649 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~--------------~~~rT~~~~~t~nP~Wne~~~~~v~~---- 649 (983)
|.|.|+|++|+||+++ |. .|.+||||++++.+ ...||+++++++||.|||.|.|.+..
T Consensus 18 ~~L~V~V~~A~~L~~~---d~-~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~ 93 (142)
T d1rh8a_ 18 GNLIIHILQARNLVPR---DN-NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQL 93 (142)
T ss_dssp TEEEEEEEEEESCCCC---SS-SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHH
T ss_pred CEEEEEEEEeECCCCc---CC-CCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeeccccc
Confidence 5799999999999876 55 78999999999842 12589999999999999999998543
Q ss_pred CCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeec
Q 002002 650 PCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVL 703 (983)
Q Consensus 650 ~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 703 (983)
....|.|+|||++.++ +|++||++.|+|.++..+....+||+|...
T Consensus 94 ~~~~L~i~V~d~d~~~--------~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 94 MKKTLEVTVWDYDRFS--------SNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TTCEEEEEEEEECSSS--------CEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CCCEEEEEEEEecCCC--------CCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 3458999999999987 788999999999999877777899999865
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7.4e-16 Score=143.34 Aligned_cols=108 Identities=28% Similarity=0.496 Sum_probs=87.0
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE-----CCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF-----DGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
...+|.|+|++|+||++++..+.+||||++.+ ...+++|++++++.||.|||+|.|......++....|.|.|||
T Consensus 12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d 91 (125)
T d2bwqa1 12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD 91 (125)
T ss_dssp TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEE
Confidence 46799999999999999999999999999998 2267899999999999999999997544444556789999998
Q ss_pred CCCCC-CCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 80 DKKTG-KRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 80 ~~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
.+... +++++||++.|++.++...+ ...||+|+
T Consensus 92 ~~~~~~~~~~~iG~~~i~l~~~~~~~--~~~Wy~L~ 125 (125)
T d2bwqa1 92 QARVREEESEFLGEILIELETALLDD--EPHWYKLQ 125 (125)
T ss_dssp C-------CEEEEEEEEEGGGCCCSS--CEEEEECC
T ss_pred CCCCCCCCCeeEEEEEEEchhcCCCC--CCEEEeCc
Confidence 87653 24569999999999987432 35799985
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.3e-15 Score=142.55 Aligned_cols=104 Identities=22% Similarity=0.217 Sum_probs=85.1
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC---CEEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG---PKWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVF 659 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~---~~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~ 659 (983)
..+.|.|+|++|+||+++ |. .|.+||||++++. .+..+|++++++.||.|||+|.|.+... ...|.|+||
T Consensus 16 ~~~~L~V~V~~a~~L~~~---~~-~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~ 91 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAK---DS-NGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVY 91 (130)
T ss_dssp SSCEEEEEEEEEECCCCC---ST-TSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEE
T ss_pred CCCEEEEEEEeeeCCccc---cC-CCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEE
Confidence 457899999999999765 55 7899999999984 3678999999999999999999998643 347999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEccc-ccC-CCeEEEEEEee
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLST-LDT-NRVYLNSYSLT 701 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~-l~~-~~~~~~~~~L~ 701 (983)
|++.++ +|++||++.|++.. +.. ......||+|.
T Consensus 92 d~~~~~--------~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~ 127 (130)
T d1dqva1 92 DFDRFS--------RHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127 (130)
T ss_dssp ECCSSS--------CCCEEEEEECCCTTGGGSSCSSCCCCEECB
T ss_pred EcCCCC--------CCceEEEEEECchhhhhcCCCCCcEEEecc
Confidence 999887 78899999998643 322 22235799987
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.9e-15 Score=139.56 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=88.8
Q ss_pred cEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEEEE
Q 002002 587 IGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIGVF 659 (983)
Q Consensus 587 ~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~v~ 659 (983)
.+.|.|+|++|++|+ . .|.+||||++.+.+ ...+|++++++.||.|||.|.|.+... ...|.|+||
T Consensus 25 ~~~L~V~v~~a~~L~------~-~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T d1wfma_ 25 KAELFVTRLEAVTSN------H-DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp TTEEEEEEEEEECCC------C-SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred CCEEEEEEEEcCCCC------C-CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEe
Confidence 458999999999993 3 67799999999843 467999999999999999999998642 458999999
Q ss_pred eCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEeeecCC
Q 002002 660 DNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLTVLLP 705 (983)
Q Consensus 660 D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 705 (983)
|++.++ +|++||++.|+|.++..++...+||+|....+
T Consensus 98 d~~~~~--------~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~~ 135 (138)
T d1wfma_ 98 TCDRFS--------RHSVAGELRLGLDGTSVPLGAAQWGELKTSGP 135 (138)
T ss_dssp ECCSSC--------TTSCSEEEEEESSSSSSCTTCCEEEECCCCSC
T ss_pred eecccc--------cceeeeEEEEEhHHccCCCCceEeEeCCCCCC
Confidence 999987 77899999999999987777789999986543
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=7.7e-15 Score=138.72 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=89.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCC-CCCeEEEEEE---CCeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQG-TASAYVIVDF---DGQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g-~~dPyv~v~~---~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
....|.|+|++|+||+.++..+ .+||||++.+ ..++++|++++++.||.|||+|.|.......+....|.|.|||.
T Consensus 20 ~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~ 99 (138)
T d1ugka_ 20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF 99 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEEC
Confidence 3468999999999999987765 4799999999 34788999999999999999999975555556677899999998
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEce
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLE 114 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 114 (983)
+.++ ++++||++.|+|.++.........|..+.
T Consensus 100 d~~~-~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 100 DRFS-RDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp CSSC-CCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred CCCC-CCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence 8886 89999999999999863434445555543
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.9e-15 Score=137.13 Aligned_cols=105 Identities=23% Similarity=0.340 Sum_probs=81.1
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeeceEEEEEEecC----CCEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-----PKWVRTRTILDRFNPRWNEQYTWDVYDP----CTVLTI 656 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-----~~~~rT~~~~~t~nP~Wne~~~~~v~~~----~~~l~i 656 (983)
..+.|.|+|++|+||+++ +. .+.+||||++.+. ....||++++++.||.|||.|.|....+ ...|.|
T Consensus 12 ~~~~L~V~V~~a~~L~~~---~~-~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i 87 (125)
T d2bwqa1 12 VGHQLIVTILGAKDLPSR---ED-GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEI 87 (125)
T ss_dssp TTTEEEEEEEEEESCCCC---TT-SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEE
T ss_pred CCCEEEEEEEEeECCCCc---CC-CCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEE
Confidence 345899999999999765 45 7889999999982 2568999999999999999999974322 347999
Q ss_pred EEEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 657 GVFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 657 ~v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
.|||.+..+. .++++||++.|+|+++..... .+||+|.
T Consensus 88 ~v~d~~~~~~------~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 88 TLWDQARVRE------EESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp EEEEC-------------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred EEEECCCCCC------CCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 9999997641 145699999999999875543 6899984
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=7.8e-15 Score=138.70 Aligned_cols=108 Identities=20% Similarity=0.288 Sum_probs=91.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeC
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYND 80 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~ 80 (983)
....|.|+|++|++|. ..|.+||||++.+.+ ..++|++++++.||.|||+|.|.+.. .++....|.|.|||.
T Consensus 24 ~~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~-~~l~~~~L~~~V~d~ 99 (138)
T d1wfma_ 24 QKAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE-EELPTATLTLTLRTC 99 (138)
T ss_dssp TTTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCT-TSSTTCEEEEEEEEC
T ss_pred CCCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeee-hhccceEEEEEEeee
Confidence 4578999999999994 357899999999942 46889999999999999999999865 345678899999998
Q ss_pred CCCCCCCCccEEEEEECccceecCCeeeEEEEceecCC
Q 002002 81 KKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSV 118 (983)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~ 118 (983)
+.++ ++++||++.|+|.++. .+.....|++|++...
T Consensus 100 ~~~~-~~~~iG~~~i~L~~l~-~~~~~~~W~~L~~~~~ 135 (138)
T d1wfma_ 100 DRFS-RHSVAGELRLGLDGTS-VPLGAAQWGELKTSGP 135 (138)
T ss_dssp CSSC-TTSCSEEEEEESSSSS-SCTTCCEEEECCCCSC
T ss_pred cccc-cceeeeEEEEEhHHcc-CCCCceEeEeCCCCCC
Confidence 8876 8999999999999986 4456789999988654
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=1.3e-14 Score=137.13 Aligned_cols=94 Identities=21% Similarity=0.329 Sum_probs=76.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEE--CC---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDF--DG---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
...+|.|+|++|+||++++..|.+||||++.+ ++ .+++|++++++.||.|||+|.|.+.. ..+....|.|.|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~-~~~~~~~l~i~v~d 91 (138)
T d1w15a_ 13 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC-ESLEEISVEFLVLD 91 (138)
T ss_dssp TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCS-SSSTTEEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecH-HHhCccEEEEEEEe
Confidence 45789999999999999999999999999998 33 46789999999999999999999865 34556789999999
Q ss_pred CCCCCCCCCccEEEEEECccc
Q 002002 80 DKKTGKRSTFLGKVKIAGSTF 100 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l 100 (983)
.+.++ ++++||++.|++...
T Consensus 92 ~~~~~-~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 92 SERGS-RNEVIGRLVLGATAE 111 (138)
T ss_dssp CCTTS-CCEEEEEEEESTTCC
T ss_pred CCCCC-CCCEEEEEEEcchhC
Confidence 88886 899999999998763
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=9.2e-15 Score=134.63 Aligned_cols=109 Identities=12% Similarity=0.273 Sum_probs=86.0
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEeCC
Q 002002 7 RKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYNDK 81 (983)
Q Consensus 7 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~~~ 81 (983)
.++.|.+.++..+ +..+|.+||||.|.+++ ..++|+++++|+||+|||+|.|.+.+ ...|.|.|||.+
T Consensus 5 ~~~~~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-----~~~l~i~V~d~d 77 (123)
T d1bdya_ 5 LRISFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-----GRVIQIVLMRAA 77 (123)
T ss_dssp EEEEEEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-----TCEEEEEEEEET
T ss_pred EEEEEEEeecccC--CCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-----ccEEEEEEEEcc
Confidence 3344444444443 45578999999999954 24679999999999999999999964 468999999743
Q ss_pred CCCCCCCccEEEEEECcccee----cCCeeeEEEEceecCCcceeeeEEEEEEEEec
Q 002002 82 KTGKRSTFLGKVKIAGSTFAK----VGSESSVYYPLEKRSVFSQIKGEIGLKVYYID 134 (983)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~----~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~~ 134 (983)
++++|.+.+++..+.. .+...+.|++|++ +|+|++++.|..
T Consensus 78 -----d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-------~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 -----EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMCVQYFL 122 (123)
T ss_dssp -----TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEEE
T ss_pred -----ccccCccEEehhheeeccccCCCcccEEEeCCC-------CEEEEEEEEEec
Confidence 6799999999998862 4667889999975 399999999874
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.7e-14 Score=133.20 Aligned_cols=102 Identities=20% Similarity=0.317 Sum_probs=80.7
Q ss_pred EEEEEEEceeccccccccCCCCCCCCCcEEEEEE---CCEEEEeeeecCCCCCeeceEEEEEEecC----CCEEEEEEEe
Q 002002 588 GLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY---GPKWVRTRTILDRFNPRWNEQYTWDVYDP----CTVLTIGVFD 660 (983)
Q Consensus 588 g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~---~~~~~rT~~~~~t~nP~Wne~~~~~v~~~----~~~l~i~v~D 660 (983)
+.|.|+|++|+||+.++ ...+.+||||.+.+ +....||++++++.||.|||+|.|..... ...|+|+|||
T Consensus 22 ~~L~V~V~~a~~L~~~d---~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d 98 (138)
T d1ugka_ 22 KAFVVNIKEARGLPAMD---EQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS 98 (138)
T ss_dssp TEEEEEEEEEESCCCCB---TTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred CEEEEEEEEecCCCCCC---CCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEE
Confidence 47999999999998763 31345899999998 44678999999999999999999975333 3489999999
Q ss_pred CCCCCCcCCCCCCCCceeEEEEEEcccccC-CCeEEEEEEe
Q 002002 661 NGRYKRDEAGKPGKDVRVGKIRVRLSTLDT-NRVYLNSYSL 700 (983)
Q Consensus 661 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L 700 (983)
.+.++ +|++||++.|+|+++.. ......|..+
T Consensus 99 ~d~~~--------~~~~iG~~~i~L~~~~~~~~~~~~~~~~ 131 (138)
T d1ugka_ 99 FDRFS--------RDDIIGEVLIPLSGIELSEGKMLMNREI 131 (138)
T ss_dssp ECSSC--------CCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred CCCCC--------CCcEEEEEEEEcccccCCCCeEEEEeec
Confidence 99987 78899999999999853 3333344433
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=1.9e-14 Score=139.20 Aligned_cols=110 Identities=24% Similarity=0.339 Sum_probs=91.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC--C---eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD--G---QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..++|.|+|++|+||+.++..+.+||||++++. + ..++|++++++.||+|||+|.|.+... .+....|.|.||+
T Consensus 23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~-~l~~~~l~i~v~d 101 (157)
T d1uowa_ 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE-QIQKVQVVVTVLD 101 (157)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG-GGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHH-HcCccEEEEEEcc
Confidence 457999999999999999999999999999983 2 456899999999999999999998764 3446789999999
Q ss_pred CCCCCCCCCccEEEEEECccc----------e-ecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTF----------A-KVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l----------~-~~~~~~~~w~~L~~~ 116 (983)
.+.++ ++++||++.|++... . .......+|++|+..
T Consensus 102 ~~~~~-~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 102 YDKIG-KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (157)
T ss_dssp CCSSS-CCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred cCCCC-CCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence 88886 899999999999753 1 123445789999765
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=2.8e-14 Score=134.86 Aligned_cols=104 Identities=19% Similarity=0.184 Sum_probs=79.9
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEE--CC---EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKY--GP---KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~--~~---~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..|.|.|+|++|+||+++ |. .|.+||||++.+ ++ ...||++++++.||.|||+|.|.+... ...|.|.
T Consensus 13 ~~~~L~V~v~~a~~L~~~---~~-~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~ 88 (138)
T d1w15a_ 13 TTNTLTVVVLKARHLPKS---DV-SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFL 88 (138)
T ss_dssp TTTEEEEEEEEEESCC----------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEE
T ss_pred CCCEEEEEEEEeECCCCC---CC-CCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEE
Confidence 456899999999999876 45 788999999997 33 456899999999999999999998542 2369999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEccccc------------CCCeEEEEEEee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLD------------TNRVYLNSYSLT 701 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~------------~~~~~~~~~~L~ 701 (983)
|||++..+ +|++||++.|++.... .+++...||+|.
T Consensus 89 v~d~~~~~--------~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~ 136 (138)
T d1w15a_ 89 VLDSERGS--------RNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLC 136 (138)
T ss_dssp EEECCTTS--------CCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred EEeCCCCC--------CCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEcc
Confidence 99999987 7889999999997632 244556676665
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=2.6e-14 Score=135.07 Aligned_cols=107 Identities=18% Similarity=0.341 Sum_probs=87.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEEC-----CeEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFD-----GQRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..+.|.|+|++|+||+.++..|.+||||++++. ..+++|++++++.||.|||+|.|.+... ++....|.|.||+
T Consensus 13 ~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~-~l~~~~l~v~v~~ 91 (137)
T d2cm5a1 13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS-DLAKKSLDISVWD 91 (137)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGG-GGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHH-HccccEEEEEeee
Confidence 567999999999999999989999999999982 2678999999999999999999998653 3456789999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEceec
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKR 116 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (983)
.+..+ ++++||++.+++..+. .....|+.|.+.
T Consensus 92 ~~~~~-~~~~iG~~~i~l~~~~---~~~~~W~~l~~~ 124 (137)
T d2cm5a1 92 YDIGK-SNDYIGGCQLGISAKG---ERLKHWYECLKN 124 (137)
T ss_dssp CCSSS-CCEEEEEEEEETTCCH---HHHHHHHHHHHC
T ss_pred CCCCC-CCCEEEEEEeCccccC---cchhhhhhHhhC
Confidence 87765 8999999999998643 223345555443
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=5.4e-14 Score=132.85 Aligned_cols=102 Identities=24% Similarity=0.308 Sum_probs=83.3
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEEC-----CEEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYG-----PKWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~-----~~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..|.|.|.|++|+||+.+ +. .|.+||||.+++. ....||++++++.||.|||+|.|++... ...|.|.
T Consensus 13 ~~~~L~V~v~~a~nL~~~---~~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~ 88 (137)
T d2cm5a1 13 QQGGLIVGIIRCVHLAAM---DA-NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDIS 88 (137)
T ss_dssp TTTEEEEEEEEEESCCCC---ST-TSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEE
T ss_pred CCCEEEEEEEEEECCCCC---CC-CCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEE
Confidence 457899999999999765 44 7789999999972 2567999999999999999999998643 3489999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|||++..+ +|++||++.|++..+..+. .+||+|.
T Consensus 89 v~~~~~~~--------~~~~iG~~~i~l~~~~~~~--~~W~~l~ 122 (137)
T d2cm5a1 89 VWDYDIGK--------SNDYIGGCQLGISAKGERL--KHWYECL 122 (137)
T ss_dssp EEECCSSS--------CCEEEEEEEEETTCCHHHH--HHHHHHH
T ss_pred eeeCCCCC--------CCCEEEEEEeCccccCcch--hhhhhHh
Confidence 99999887 7889999999998754322 4566554
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=8.6e-14 Score=134.51 Aligned_cols=106 Identities=26% Similarity=0.315 Sum_probs=87.1
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecC---CCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDP---CTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~---~~~l~i~ 657 (983)
..|.|.|.|++|+||+.. +. .+.+||||++++.. ...+|++++++.||.|||+|.|++... ...|.|.
T Consensus 23 ~~~~L~V~V~~a~~L~~~---~~-~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~ 98 (157)
T d1uowa_ 23 TAGKLTVVILEAKNLKKM---DV-GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVT 98 (157)
T ss_dssp TTTEEEEEEEEEESCCCC---ST-TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEE
T ss_pred CCCEEEEEEEEEEEcccc---cC-CCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEE
Confidence 346899999999999765 45 78999999999842 345899999999999999999998654 3489999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccc------------cCCCeEEEEEEeeec
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTL------------DTNRVYLNSYSLTVL 703 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~~~~L~~~ 703 (983)
|||.+.++ +|++||++.|++... ...+....||+|...
T Consensus 99 v~d~~~~~--------~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 99 VLDYDKIG--------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (157)
T ss_dssp EEECCSSS--------CCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred EcccCCCC--------CCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence 99999988 788999999999763 134567889988753
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=1.8e-13 Score=125.87 Aligned_cols=91 Identities=13% Similarity=0.244 Sum_probs=77.0
Q ss_pred CCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEecCCCEEEEEEEeCCCCCCcCCCCCCCCceeEEEEEE
Q 002002 610 RGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDEAGKPGKDVRVGKIRVR 684 (983)
Q Consensus 610 ~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~~~~~l~i~v~D~d~~~~~~~~~~~~d~~lG~~~i~ 684 (983)
.|.+||||.+++.+ ...+|+++++|+||+|||+|.|.|.+ ...|.|.|||+| |+++|.+.|+
T Consensus 21 ~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d------------d~~~g~~~i~ 87 (123)
T d1bdya_ 21 DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA------------EDPMSEVTVG 87 (123)
T ss_dssp CCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET------------TEEEEEEEEE
T ss_pred CCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc------------ccccCccEEe
Confidence 78999999999954 24579999999999999999999975 568999999964 4599999999
Q ss_pred ccccc-----CCCeEEEEEEeeecCCCCCccceEEEEEEEEE
Q 002002 685 LSTLD-----TNRVYLNSYSLTVLLPGGAKKMGEIEIAVRFT 721 (983)
Q Consensus 685 l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~f~ 721 (983)
+..|. .+.....|++|. +.|+|+++++|.
T Consensus 88 l~~l~~~~~~~~~~~~~W~~L~--------~~Gkl~l~v~~f 121 (123)
T d1bdya_ 88 VSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMCVQYF 121 (123)
T ss_dssp HHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEEE
T ss_pred hhheeeccccCCCcccEEEeCC--------CCEEEEEEEEEe
Confidence 99884 466778999885 359999999985
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=2.5e-14 Score=136.58 Aligned_cols=103 Identities=29% Similarity=0.303 Sum_probs=82.7
Q ss_pred CcEEEEEEEceeccccccccCCCCCCCCCcEEEEEECC-----EEEEeeeecCCCCCeeceEEEEEEec---CCCEEEEE
Q 002002 586 PIGLLEVGIRGATNLLPVKTKDGTRGTTDAYVVAKYGP-----KWVRTRTILDRFNPRWNEQYTWDVYD---PCTVLTIG 657 (983)
Q Consensus 586 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sDpy~~~~~~~-----~~~rT~~~~~t~nP~Wne~~~~~v~~---~~~~l~i~ 657 (983)
..|.|.|+|++|+||+++ +. .|.+||||++++.+ ...||++++++.||.|||.|.|.+.. ....|.|.
T Consensus 18 ~~~~L~V~V~~a~nL~~~---~~-~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~ 93 (145)
T d1dqva2 18 TAGLLTVTIIKASNLKAM---DL-TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 93 (145)
T ss_dssp TTTEEEEEEEEEESCCCC---SS-SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCE
T ss_pred CCCEEEEEEEEEeCCCCc---CC-CCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEE
Confidence 457899999999999765 45 77899999999854 35789999999999999999998753 23479999
Q ss_pred EEeCCCCCCcCCCCCCCCceeEEEEEEcccccCCCeEEEEEEee
Q 002002 658 VFDNGRYKRDEAGKPGKDVRVGKIRVRLSTLDTNRVYLNSYSLT 701 (983)
Q Consensus 658 v~D~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 701 (983)
|||++..+ +|++||++.|++..+... ...+|++|.
T Consensus 94 v~d~~~~~--------~~~~iG~~~i~l~~~~~~-~~~~W~~l~ 128 (145)
T d1dqva2 94 VVDYDCIG--------HNEVIGVCRVGPEAADPH-GREHWAEML 128 (145)
T ss_dssp EEECCSSS--------CCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred EEecCCCC--------CCcEEEEEEECchHcCch-hhHHHHHHH
Confidence 99999987 788999999999876321 124565554
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=4e-14 Score=135.09 Aligned_cols=107 Identities=23% Similarity=0.295 Sum_probs=87.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCeEEEEEECC-----eEEeeeCcCCCCCCeeeeEEEEEeeecCCCCCceEEEEEEe
Q 002002 5 CNRKLIVEVCNAKNLMPKDGQGTASAYVIVDFDG-----QRRRTKTKFRDLNPQWDERLEFLVHDAESMPTEILEINLYN 79 (983)
Q Consensus 5 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~t~nP~WnE~f~f~v~~~~~l~~~~L~v~V~~ 79 (983)
..++|.|+|++|+||+..+..|.+||||++++.. .+++|++++++.||.|||+|.|.+.. ..+....|.|.||+
T Consensus 18 ~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~-~~~~~~~l~v~v~d 96 (145)
T d1dqva2 18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP-ESVENVGLSIAVVD 96 (145)
T ss_dssp TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCS-GGGGSCCCCCEEEE
T ss_pred CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEeh-hhcCCCEEEEEEEe
Confidence 4689999999999999999999999999999843 36789999999999999999998764 33446789999998
Q ss_pred CCCCCCCCCccEEEEEECccceecCCeeeEEEEcee
Q 002002 80 DKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEK 115 (983)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 115 (983)
.+..+ ++++||++.|++..+... ...+|++|.+
T Consensus 97 ~~~~~-~~~~iG~~~i~l~~~~~~--~~~~W~~l~~ 129 (145)
T d1dqva2 97 YDCIG-HNEVIGVCRVGPEAADPH--GREHWAEMLA 129 (145)
T ss_dssp CCSSS-CCEEEEECCCSSCTTCHH--HHHHHHTSSS
T ss_pred cCCCC-CCcEEEEEEECchHcCch--hhHHHHHHHh
Confidence 88776 889999999999876421 2345666543
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.2e-11 Score=113.20 Aligned_cols=110 Identities=22% Similarity=0.293 Sum_probs=83.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCeEEEEEECC------eEEeeeC--cCCCCCCeeeeE-EEEE-eeecCCCCCceEEEEE
Q 002002 8 KLIVEVCNAKNLMPKDGQGTASAYVIVDFDG------QRRRTKT--KFRDLNPQWDER-LEFL-VHDAESMPTEILEINL 77 (983)
Q Consensus 8 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~--~~~t~nP~WnE~-f~f~-v~~~~~l~~~~L~v~V 77 (983)
.|.|+|++|++|+.+ ++||||+|++-| .+.+|++ ..+++||.|||. |.|. +..++ ...|.|.|
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~---l~~L~f~V 74 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE---LASLRVAV 74 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG---GCEEEEEE
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCc---ccEEEEEE
Confidence 589999999999765 589999999832 3344444 467899999976 4443 44432 45799999
Q ss_pred EeCCCCCCCCCccEEEEEECccceecCCeeeEEEEceecCCcceeeeEEEEEEEEe
Q 002002 78 YNDKKTGKRSTFLGKVKIAGSTFAKVGSESSVYYPLEKRSVFSQIKGEIGLKVYYI 133 (983)
Q Consensus 78 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~s~~~G~l~l~i~~~ 133 (983)
||++ |+|||++.+|++.+. .+.++++|.+..+..-..+.|.+++.+.
T Consensus 75 ~D~d-----~~~lG~~~ipl~~l~----~GyR~vpL~~~~g~~l~~~~L~v~i~~~ 121 (122)
T d2zkmx2 75 MEEG-----NKFLGHRIIPINALN----SGYHHLCLHSESNMPLTMPALFIFLEMK 121 (122)
T ss_dssp EETT-----TEEEEEEEEEGGGBC----CEEEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred ECCC-----CCEEEEEEEEcccCc----CCceEEEccCCCcCCCCCceEEEEEEEE
Confidence 9743 689999999999886 4678999998877765678888887654
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=6e-11 Score=108.36 Aligned_cols=109 Identities=26% Similarity=0.336 Sum_probs=79.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCCCcEEEEEE-C-----CeEEEeeeeeeccCCCCCCCCcccce-EEE-EecCCCCCc
Q 002002 428 YLRLTVIQTQDLQPGSGSEPKVRSPELYVKGQL-G-----AQLFKTGRTSVGLSPSSSANPTWNED-LVF-VAAEPFEPF 499 (983)
Q Consensus 428 ~L~V~Viea~~L~~~~~~~d~~~~sdpyv~v~l-g-----~~~~rT~~~~~~~~~~~t~nP~wne~-f~f-~~~~~~~~~ 499 (983)
.|+|+|++|++|+.. +.||||++++ | ..+.+|++..+ +++.||.|||. |.| .+..+....
T Consensus 2 tl~V~Visaq~L~~~--------~~dPyV~V~l~g~~~D~~~~~~t~~~~~----~n~~nP~wne~~~~~~~~~~~~l~~ 69 (122)
T d2zkmx2 2 TLSITVISGQFLSER--------SVRTYVEVELFGLPGDPKRRYRTKLSPS----TNSINPVWKEEPFVFEKILMPELAS 69 (122)
T ss_dssp EEEEEEEEEESCCSS--------CCCEEEEEEEECCTTSCCCCEECCCCSS----SCCSSCBCCCCCEEEEEESSGGGCE
T ss_pred EEEEEEEEeeCCCCC--------CCCcEEEEEEECcCCCCCccEEEEEEEe----CCeecceEcccEeEEEecCCCcccE
Confidence 489999999999853 5899999998 3 24456665533 36899999986 444 455566668
Q ss_pred EEEEEEeCcCCceeEEEEEecccccccccCCCCCcceEEeccCCCCCC-cceEEEEEEE
Q 002002 500 LVVTVEDVTNGCSVGHARIQMSTVERRIDDRAEPKSRWFNLVGDETRP-YAGRIHLRAC 557 (983)
Q Consensus 500 L~i~V~D~d~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~l~l~i~ 557 (983)
|.|.|||++ +++||++.+||+.+.. .-++++|.+..+.. ..+.|.+.|.
T Consensus 70 L~f~V~D~d-~~~lG~~~ipl~~l~~--------GyR~vpL~~~~g~~l~~~~L~v~i~ 119 (122)
T d2zkmx2 70 LRVAVMEEG-NKFLGHRIIPINALNS--------GYHHLCLHSESNMPLTMPALFIFLE 119 (122)
T ss_dssp EEEEEEETT-TEEEEEEEEEGGGBCC--------EEEEEEEECTTCCEEEEEEEEEEEE
T ss_pred EEEEEECCC-CCEEEEEEEEcccCcC--------CceEEEccCCCcCCCCCceEEEEEE
Confidence 999999984 8999999999998863 34778888765422 2244444443
|