Citrus Sinensis ID: 002003

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980---

MIKMQEYSNGGGGDDGGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKVQFWYIVVSTKSMLVLIIFVMHSNLLFTAQISVINIFIYGHMSLLLLLLHSIHCGEVYKAFRSIQVVS

ccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHcHHHHHHHHHHHHHHHHHHccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHcHHccccc

ccEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccEcHccccccccccccccccccEEcccHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHccEccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHEEcccHHHccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHcEEEEccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccHHHHHHHHcccHHHHHHHHHEEEEEEc

mikmqeysnggggddggggggpaDLAKLQSIMHSIEIACSSIQMHVNPAAAEATILglcqspqpykaCQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMqhasspegyVQAKISSVAAQLMKRgwldftssdkeAFFSQVHQAVLGIHGVDTQFIGINFLESLvsefspstssamglprefHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWdfqfdtsgrkiSINVFSAgvrtetssskrseciivqpgpawcDALISSGHIVWLLNLYSALRQKfssegywldcpiAVSARKLIVQLCSltgtvfpsdngkmqEHHLLQLLSGilewvdppdVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLksirpfgtltLLSNLMCEVVKVLMMNnteegtwswEARDILLDTWTTLLVSLDstgrnvvlpLEVRNAAASLFALIVESELKVAsasamddngefnYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLhqgrgmidpteTLEELYSLLLITGhvladegegeipvvpnaiQTHFVDTIEAAKHPVVLLCGSIIKFaewsldpearasvfsPRLMEAIVWFLARWSQTylmpleefrdsstnlchdtgyqhqssTSRKALLSFFgehnqgkpvlDIIVRISMTtlvsypgekdlqELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYgmrnsessnqYVRDLTRHATAYLVELSgkndlknvsqqpdIILLVSCLLERLrgaanateprtQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKVQFWYIVVSTKSMLVLIIFVMHSNLLFTAQISVINIFIYGHMSLLLLLLHSIHCGEVYKAFRSIQVVS

mikmqeysnggggddgggGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGvrtetssskrsecIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSgkndlknvsqQPDIILLVSCLLERLRgaanateprtqKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKVQFWYIVVSTKSMLVLIIFVMHSNLLFTAQISVINIFIYGHMSLLLLLLHSIHCGEVYKAFRSIQVVS

MIKMQEYSNggggddggggggPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVanarfqaaaairdaamrEWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPtetleelyslllitGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKVQFWYIVVSTKSMLVLIIFVMHSNLLFTAQISVINIFIYGHMSllllllHSIHCGEVYKAFRSIQVVS

*****************************SIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF*********LPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVR*********ECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAI********MLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGY********KALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGM*******QYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKVQFWYIVVSTKSMLVLIIFVMHSNLLFTAQISVINIFIYGHMSLLLLLLHSIHCGEVYKAFRSIQ***

***************************LQSIMHSIEIAC************EATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTK**********EVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASA**M**NGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFA************ETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHF**TIEAAKHPVVLLCGSIIKFAE**************RLMEAIVWFLARWSQTYLMPLEEFRDSS********************LSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGK**********DIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKVQ***IVVSTKSMLVLIIFVMHSNLLFTAQISVINIFIYGHMSLLLLLLHSIHCGEVYKAFRSIQVV*

********NGGGGDDGGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSE*********GLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAG**********SECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDT*********RKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKVQFWYIVVSTKSMLVLIIFVMHSNLLFTAQISVINIFIYGHMSLLLLLLHSIHCGEVYKAFRSIQVVS

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		983	2.2.26 [Sep-21-2011]
Q499Y0		1150	Exportin-4 OS=Xenopus lae	N/A	no	0.827	0.706	0.25	3e-57
Q9ESJ0		1151	Exportin-4 OS=Mus musculu	yes	no	0.855	0.730	0.248	2e-55
Q9C0E2		1151	Exportin-4 OS=Homo sapien	yes	no	0.855	0.730	0.247	2e-54
Q802D3		1150	Exportin-4 OS=Danio rerio	yes	no	0.859	0.734	0.241	7e-54
Q5ZMR9		1154	Exportin-4 OS=Gallus gall	yes	no	0.825	0.702	0.249	2e-53
Q54UP5		1133	Exportin-4 OS=Dictyosteli	yes	no	0.801	0.695	0.207	4e-24
Q569Z2		1087	Exportin-7-B OS=Xenopus l	N/A	no	0.301	0.272	0.214	6e-06
Q704U0		1087	Exportin-7-A OS=Xenopus l	N/A	no	0.306	0.276	0.197	0.0002

>sp\|Q499Y0\|XPO4_XENLA Exportin-4 OS=Xenopus laevis GN=xpo4 PE=2 SV=1	Back alignment and function desciption

 Score =  224 bits (571), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 241/964 (25%), Positives = 433/964 (44%), Gaps = 151/964 (15%)

Query: 51  AEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110
           AE   L   +S  P+  C+ ILE S+V    FQAA AI +A +REW  L     +SL  F
Sbjct: 36  AEHVFLSFRKSKSPFAVCKHILETSKVDYVLFQAATAIMEAVVREWILLEKSSIESLRTF 95

Query: 111 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQ 170
            L +V+Q  +  + YV+ +I    A ++KRG LD  S D ++ F +V Q +   +    Q
Sbjct: 96  LLTYVLQRPNL-QKYVREQILLAVAVIVKRGSLD-KSIDCKSIFHEVSQLISSCNPT-MQ 152

Query: 171 FIGINFLESLVSEFSPST-SSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQI 229
            +  + L +L+ EFS S+ +S +GL  EFH  C+   + + L+  +    +     +++ 
Sbjct: 153 TLACSILTALLIEFSSSSKTSNIGLSMEFHGSCKRVFQDEDLRRIFMLTIEVLQEFSRR- 211

Query: 230 IESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECII 289
              +  A         L L +Q+L+W+F     GR   I +F +           S+ ++
Sbjct: 212 --ENLNAQMSSVFQRYLALANQVLSWNFLPPNLGRHY-IAMFES-----------SQNVM 257

Query: 290 VQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTV 349
           ++P  +W + L++S  +     ++  +R+         D  +A  + + + QL SL G +
Sbjct: 258 LKPTESWRETLLNSRVMELFFTVHRKIRE---------DSDMAQDSLQCLAQLASLHGPI 308

Query: 350 FPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPF 409
           FP +  + Q  +L   + G+L  ++        IE   SE+  +        I+ + T  
Sbjct: 309 FPDE--RSQVDYLAHFIEGLLSTIN-------GIEIEDSEAVGISNI-----ISNLIT-- 352

Query: 410 VFDRLLKSIRP---FGT-LTLLSNLMCEVVKVLMMNNT--EEGTWSWEARDILLDTWTTL 463
           VF R + +  P   F + +  L++L C   +   +     ++     EA D LL++W TL
Sbjct: 353 VFPRNILTAIPSDLFSSFVNCLTHLTCSFGRSAALEEVLDKDDMVYMEAYDKLLESWLTL 412

Query: 464 LVSLDSTGR-----------------NVVLPLEVRNAAASLFALIVESELKVASASAMDD 506
           +       +                 ++  P   RN  A+  A     E +  +    DD
Sbjct: 413 VQDDQHFHKGFFTQHAVQVFNSYIQCHLAAPDGTRNLTANGVA---SREEEEINEIQEDD 469

Query: 507 NGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLH------------ 554
              F+          ++L+S  ++ R A D  +PLLT L  ER  RLH            
Sbjct: 470 RDLFS----------DQLASVGMLGRIASDHCIPLLTSLLEERVTRLHGQLQRHQQQLLA 519

Query: 555 -QGRGMIDPTETLEELYS----LLLITGHVLADEGEGEIPVVPNAI------QTHFVD-- 601
             G   ID  + L++LY     L+L+TG++LAD+ +GE P++P+ I      Q+  VD  
Sbjct: 520 SPGADSID-NKVLDDLYEDIHWLILVTGYLLADDTQGETPLIPSEIMEYSIKQSTEVDIN 578

Query: 602 -TIEAAKHP---------------VVLLCGSIIKFAEWSLDPEARAS------VFSPRLM 639
            T++    P               V+ L  ++++ +E     E+RA+      + SP++ 
Sbjct: 579 TTLQILGSPGEKASSIPGCNRTDSVIRLVSAVLRASEV----ESRATRADLTHLLSPQMG 634

Query: 640 EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG-KPVL 698
           + IVWFL RW++TYL+  E+  D   +L  +T                FG   +G   ++
Sbjct: 635 KDIVWFLKRWTKTYLLVDEKLYDQ-ISLPFNTA---------------FGADTEGCHWII 678

Query: 699 DIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFAN-DK 757
             ++   ++ L  +  E++L   T  QLL  LV R+     ++   +W  LA  FA    
Sbjct: 679 GYLLEKVISNLSVWSSEQELANETV-QLLVTLVERRERANLVIQCENWWNLAKQFAQRSP 737

Query: 758 TLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQ 817
            L  L+S+ QR+L + LVL  +   +S++  QY  ++ +      + +  + + + + Q+
Sbjct: 738 PLNFLSSSVQRTLMKALVLGGFAHMDSDTKQQYWTEVLQPLQQRFLNVINQENFQQICQE 797

Query: 818 PDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKF 877
            ++   ++  LE L G A AT+      ++      +   + L+EVYK+    V L+++ 
Sbjct: 798 EEVKQEITATLEALCGIAEATQIDNVAILFNFLMDFLTNCIGLMEVYKNNPETVNLIIEV 857

Query: 878 VVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKVQFWYIVVSTKSMLVLIIFVMH 937
            V+    QI YL   +   + + C  LLQ+YS +N+G+ +        +   +L+I  + 
Sbjct: 858 FVEVAHKQICYLGESKAMNLYEACLTLLQVYSKNNLGRKRIDVTAEEDQYQDLLLIMELL 917

Query: 938 SNLL 941
           +NLL
Sbjct: 918 TNLL 921

Mediates the nuclear export of proteins (cargos) with broad substrate specificity.
Xenopus laevis (taxid: 8355)

>sp\|Q9ESJ0\|XPO4_MOUSE Exportin-4 OS=Mus musculus GN=Xpo4 PE=1 SV=2	Back alignment and function description

>sp\|Q9C0E2\|XPO4_HUMAN Exportin-4 OS=Homo sapiens GN=XPO4 PE=1 SV=2	Back alignment and function description

>sp\|Q802D3\|XPO4_DANRE Exportin-4 OS=Danio rerio GN=xpo4 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZMR9\|XPO4_CHICK Exportin-4 OS=Gallus gallus GN=XPO4 PE=2 SV=1	Back alignment and function description

>sp\|Q54UP5\|XPO4_DICDI Exportin-4 OS=Dictyostelium discoideum GN=xpo4 PE=3 SV=1	Back alignment and function description

>sp\|Q569Z2\|XPO7B_XENLA Exportin-7-B OS=Xenopus laevis GN=xpo7-b PE=2 SV=1	Back alignment and function description

>sp\|Q704U0\|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-a PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		983
302143624		1176	unnamed protein product [Vitis vinifera]	0.906	0.757	0.769	0.0
255561939		1165	protein with unknown function [Ricinus c	0.903	0.762	0.758	0.0
359488084		1123	PREDICTED: exportin-4-like [Vitis vinife	0.860	0.753	0.768	0.0
297828948		1123	hypothetical protein ARALYDRAFT_317312 [	0.870	0.762	0.703	0.0
334185076		1118	uncharacterized protein [Arabidopsis tha	0.847	0.745	0.701	0.0
356504127		1117	PREDICTED: exportin-4-like [Glycine max]	0.853	0.751	0.697	0.0
356571192		1117	PREDICTED: exportin-4-like [Glycine max]	0.860	0.757	0.690	0.0
449449573		1121	PREDICTED: exportin-4-like [Cucumis sati	0.863	0.757	0.699	0.0
224145812		920	predicted protein [Populus trichocarpa]	0.729	0.779	0.649	0.0
242039377		1165	hypothetical protein SORBIDRAFT_01g01933	0.909	0.767	0.542	0.0

>gi\|302143624\|emb\|CBI22377.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1382 bits (3576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 699/908 (76%), Positives = 778/908 (85%), Gaps = 17/908 (1%)

Query: 16  GGGGGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENS 75
           G    GPADL +LQ+ M +IEIACSSIQMHVNPAAAEATIL LCQSPQPY+ACQFILENS
Sbjct: 12  GSSDRGPADLTQLQATMQAIEIACSSIQMHVNPAAAEATILSLCQSPQPYQACQFILENS 71

Query: 76  QVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAA 135
           QVANARFQAAAAIRDAA+REW  LT+D+KKSLI FCLCFVMQHASSPEGYVQ+K+SSVAA
Sbjct: 72  QVANARFQAAAAIRDAAIREWGLLTSDDKKSLISFCLCFVMQHASSPEGYVQSKVSSVAA 131

Query: 136 QLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLP 195
           QLMKRGWLDF +++KEAF  +V QAVLG+HGVD QF GINFLESLVSEFSPSTS+AMGLP
Sbjct: 132 QLMKRGWLDFAAAEKEAFMYEVKQAVLGVHGVDVQFTGINFLESLVSEFSPSTSTAMGLP 191

Query: 196 REFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255
           REFHEQC   LEL+YLKTFYCWA+DAA+SVT +IIES +A  EVK CTAALRL+ QILNW
Sbjct: 192 REFHEQCLKLLELEYLKTFYCWAQDAAVSVTSRIIESHSAVPEVKVCTAALRLMLQILNW 251

Query: 256 DFQFDTS---GRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNL 312
           DF+++T+   G K S++ F+ GVR + +S KRSECI+VQPGP+W D LIS+GHI WLL L
Sbjct: 252 DFRYNTNMAKGAKPSMDAFNDGVRHDIASPKRSECILVQPGPSWRDVLISNGHIGWLLGL 311

Query: 313 YSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEW 372
           Y ALRQKFS EGYWLDCP+AVSARKLIVQ CSLTGT+FPS N  MQEHHLLQLLSGI+ W
Sbjct: 312 YGALRQKFSCEGYWLDCPVAVSARKLIVQFCSLTGTIFPSAN--MQEHHLLQLLSGIIPW 369

Query: 373 VDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMC 432
           +DPP  V+QAIE GKSESEMLDGCRALLS+ATVTTP VFD+LLKS+ PFGTLTLLS LMC
Sbjct: 370 IDPPHAVSQAIECGKSESEMLDGCRALLSMATVTTPTVFDQLLKSVSPFGTLTLLSTLMC 429

Query: 433 EVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIV 492
           EV+KVLM  NTEE TWSW ARDILLDTWTTLL+  +    N   P E  NAAA+LFALIV
Sbjct: 430 EVIKVLMATNTEEETWSWMARDILLDTWTTLLIVCE----NARFPSEGINAAANLFALIV 485

Query: 493 ESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFAR 552
           E+EL+ ASASA +D+ +  YLQASISAMDERLSSYALIARAAID  +PLLTRLF+ERFAR
Sbjct: 486 EAELRAASASAFNDDEDSQYLQASISAMDERLSSYALIARAAIDVAIPLLTRLFTERFAR 545

Query: 553 LHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVL 612
           LHQG+G+ DPTETLEELYSLLLITGHVLADEGEGE P VP AIQTHFVD +E  KHPVV+
Sbjct: 546 LHQGKGITDPTETLEELYSLLLITGHVLADEGEGETPSVPMAIQTHFVDIVETHKHPVVV 605

Query: 613 LCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTG 672
           L  +II+FAE SLD E R SVFSPRLMEA++WFLARWS TYLM  EE R+ + N    +G
Sbjct: 606 LSSTIIRFAEQSLDQEMRTSVFSPRLMEAVIWFLARWSSTYLMVPEECREDNCN----SG 661

Query: 673 YQHQ----SSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLH 728
           Y H+    S  SRKALLSFFG++NQGKPVLD+IVRISM TL+SYPGEKDLQ LTC QLLH
Sbjct: 662 YDHESWLRSQHSRKALLSFFGQYNQGKPVLDVIVRISMMTLISYPGEKDLQALTCYQLLH 721

Query: 729 ALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSN 788
           +LVRRKNVC HLVA  SWRELA+AFAN +TL  L+ST+QRSLAQTLVLSA GMRN E+SN
Sbjct: 722 SLVRRKNVCTHLVAFDSWRELANAFANGRTLFSLHSTHQRSLAQTLVLSASGMRNPEASN 781

Query: 789 QYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYE 848
           QYVRDLT H TAYLVE+S KNDLKN SQQPDIIL VSCLLERLRGAA A EPRTQKAIYE
Sbjct: 782 QYVRDLTSHMTAYLVEMSNKNDLKNFSQQPDIILSVSCLLERLRGAARALEPRTQKAIYE 841

Query: 849 MGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLY 908
           MGFSVMN VL+LLEVYKHE AVVYLLLKFVVDWVDG+I YLE QET IV+DFC RLLQLY
Sbjct: 842 MGFSVMNSVLVLLEVYKHEFAVVYLLLKFVVDWVDGEIIYLEAQETAIVVDFCMRLLQLY 901

Query: 909 SSHNIGKV 916
           SSHNIGK+
Sbjct: 902 SSHNIGKI 909

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255561939\|ref\|XP_002521978.1\| protein with unknown function [Ricinus communis] gi\|223538782\|gb\|EEF40382.1\| protein with unknown function [Ricinus communis]	Back alignment and taxonomy information

>gi\|359488084\|ref\|XP_002266608.2\| PREDICTED: exportin-4-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297828948\|ref\|XP_002882356.1\| hypothetical protein ARALYDRAFT_317312 [Arabidopsis lyrata subsp. lyrata] gi\|297328196\|gb\|EFH58615.1\| hypothetical protein ARALYDRAFT_317312 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334185076\|ref\|NP_187099.6\| uncharacterized protein [Arabidopsis thaliana] gi\|332640567\|gb\|AEE74088.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356504127\|ref\|XP_003520850.1\| PREDICTED: exportin-4-like [Glycine max]	Back alignment and taxonomy information

>gi\|356571192\|ref\|XP_003553763.1\| PREDICTED: exportin-4-like [Glycine max]	Back alignment and taxonomy information

>gi\|449449573\|ref\|XP_004142539.1\| PREDICTED: exportin-4-like [Cucumis sativus] gi\|449479730\|ref\|XP_004155691.1\| PREDICTED: exportin-4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224145812\|ref\|XP_002325773.1\| predicted protein [Populus trichocarpa] gi\|222862648\|gb\|EEF00155.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|242039377\|ref\|XP_002467083.1\| hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor] gi\|241920937\|gb\|EER94081.1\| hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		983
MGI\|MGI:1888526		1151	Xpo4 "exportin 4" [Mus musculu	0.354	0.302	0.262	3.4e-45
RGD\|1312015		1152	Xpo4 "exportin 4" [Rattus norv	0.354	0.302	0.266	5.7e-45
UNIPROTKB\|Q9C0E2		1151	XPO4 "Exportin-4" [Homo sapien	0.351	0.300	0.255	6.5e-44
UNIPROTKB\|E2QUP6		1151	XPO4 "Uncharacterized protein"	0.351	0.300	0.253	1.1e-43
UNIPROTKB\|F1P157		1146	XPO4 "Exportin-4" [Gallus gall	0.317	0.272	0.265	2.1e-43
UNIPROTKB\|Q5ZMR9		1154	XPO4 "Exportin-4" [Gallus gall	0.317	0.270	0.265	2.2e-43
ZFIN\|ZDB-GENE-030131-3062		1152	xpo4 "exportin 4" [Danio rerio	0.351	0.300	0.248	4e-43
UNIPROTKB\|F1MVW4		1153	XPO4 "Uncharacterized protein"	0.351	0.300	0.253	3.1e-41
UNIPROTKB\|F1RVA6		1002	XPO4 "Uncharacterized protein"	0.351	0.345	0.260	9.9e-35
TAIR\|locus:4515103505		130	AT4G38092 "AT4G38092" [Arabido	0.104	0.792	0.572	3.1e-25

MGI\|MGI:1888526 Xpo4 "exportin 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

 Score = 281 (104.0 bits), Expect = 3.4e-45, Sum P(3) = 3.4e-45
 Identities = 103/393 (26%), Positives = 185/393 (47%)

Query:   577 GHVLADEGEGEIPVVPNAIQTHF------VD---TIE--------AAKHPVVLLCGSIIK 619
             G++LAD+ +GE P++P  I  +       VD   T++        A+  P      S+I+
Sbjct:   547 GYLLADDTQGETPLIPPEIMEYSIKHSSEVDINTTLQILGSPGEKASSIPGYSRTDSVIR 606

Query:   620 FAEWSL---DPEARA------SVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHD 670
                  L   + E+RA       + SP++ + IVWFL RW++TYL+  E+  D        
Sbjct:   607 LLSAVLRVSEVESRAIRADLTHLLSPQMGKDIVWFLKRWAKTYLLVDEKLYD-------- 658

Query:   671 TGYQHQSSTSRKALLSFFGEHNQGKP-VLDIIVRISMTTLVSYPGEKDLQELTCNQLLHA 729
                  Q S     L + FG   +G   ++  +++  ++ L  +  E+DL   T  QLL  
Sbjct:   659 -----QISLP---LSTAFGADTEGSQWIIGYLLQKVISNLSVWSSEQDLANDTV-QLLVT 709

Query:   730 LVRRKNVCVHLVALGSWRELASAFAN-DKTLILLNSTNQRSLAQTLVLSAYGMRNSESSN 788
             LV R+     ++   +W  LA  FA+    L  L+S  QR+L + LVL  +   ++E+  
Sbjct:   710 LVERRERANLVIQCENWWNLAKQFASRSPPLNFLSSPVQRTLMKALVLGGFAHMDTETKQ 769

Query:   789 QYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYE 848
             QY  ++ +      + +  + + + + QQ ++   ++  LE L G A AT+      ++ 
Sbjct:   770 QYWTEVLQPLQQRFLRVINQENFQQMCQQEEVKQEITATLEALCGIAEATQIDNVAILFN 829

Query:   849 MGFSVMNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLY 908
                  +N  + L+EVYK+    V L+++  V+    QI YL   +   + + C  LLQ+Y
Sbjct:   830 FLMDFLNNCIGLMEVYKNTPETVNLIIEVFVEVAHKQICYLGESKAMHLYEACLTLLQVY 889

Query:   909 SSHNIGKVQFWYIVVSTKSMLVLIIFVMHSNLL 941
             S +N+G+ +        +   +L+I  + +NLL
Sbjct:   890 SKNNLGRQRIDVTAEEEQYQDLLLIMELLTNLL 922

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046827 "positive regulation of protein export from nucleus" evidence=ISO

RGD\|1312015 Xpo4 "exportin 4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9C0E2 XPO4 "Exportin-4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QUP6 XPO4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P157 XPO4 "Exportin-4" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZMR9 XPO4 "Exportin-4" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-3062 xpo4 "exportin 4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MVW4 XPO4 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RVA6 XPO4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

TAIR\|locus:4515103505 AT4G38092 "AT4G38092" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		983
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	100.0
KOG4541		748	consensus Nuclear transport receptor exportin 4 (i	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG4541		748	consensus Nuclear transport receptor exportin 4 (i	99.9
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	99.84
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	99.66
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	99.57
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.39
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.1
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.86
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	98.81
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.56
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.45
KOG2081		559	consensus Nuclear transport regulator [Intracellul	98.37
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	97.87
COG5656		970	SXM1 Importin, protein involved in nuclear import	97.86
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	97.25
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	96.44
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	93.17

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=7.3e-163  Score=1343.55  Aligned_cols=846  Identities=17%  Similarity=0.243  Sum_probs=758.0

Q ss_pred             hhhHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCCCCH
Q 002003           25 LAKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTA  101 (983)
Q Consensus        25 ~~~l~~~~~~lE~~~~~ly~~~~---r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~l~~  101 (983)
                      |++|    ++||.+|+.+|++.|   |.+||+.|.+|..+|+++++|+.||++++.||.++.|+++|.+.+.+.- .+|.
T Consensus         1 m~sL----aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl   75 (1082)
T KOG1410|consen    1 MQSL----AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPL   75 (1082)
T ss_pred             CccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcH
Confidence            3466    999999999999865   9999999999999999999999999999999999999999999999974 7999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCC---chhhHHHHHHHHhcccCCchhHHHHHHHHH
Q 002003          102 DEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSS---DKEAFFSQVHQAVLGIHGVDTQFIGINFLE  178 (983)
Q Consensus       102 ~~r~~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~---~~~~~~~~v~~~l~~~~s~~~~~igl~iL~  178 (983)
                      +||.+||+|++||+.+++|++++||+..++|++|+|+|+||+|.++.   +|+ .+.++.+|++. ++.+|++||+.||+
T Consensus        76 ~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd-~v~~~~kfl~~-~~ve~~~igv~iLs  153 (1082)
T KOG1410|consen   76 EQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRD-PVDDVTKFLQM-DNVEHCIIGVQILS  153 (1082)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhh-hHHHHHHHhcc-CchHHHHHHHHHHH
Confidence            99999999999999999889999999999999999999999997654   364 88999999985 67999999999999


Q ss_pred             HHHhhhCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhcccccc
Q 002003          179 SLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQ  258 (983)
Q Consensus       179 ~lv~Efs~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~LswdF~  258 (983)
                      +||+||++.+.   +.|..+|||.+.+|||+.|++||.+++.+|+...+..++.   ..+.+++.++|++..+||+|||+
T Consensus       154 qLvqemN~~~~---~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd---~~q~~L~~~vL~L~l~Cl~FDfi  227 (1082)
T KOG1410|consen  154 QLVQEMNQADG---MDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLND---RAQLGLLMQVLKLNLNCLNFDFI  227 (1082)
T ss_pred             HHHHHhhCCCC---CCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCccc---HhHhhHHHHHHHHHhhhcccccc
Confidence            99999999876   8899999999999999999999999999999877433322   13668999999999999999999


Q ss_pred             cCCCCCcccccccccccccccCCCCcccccccCCCccchHhhcccchHHHHHHHHHHHHhccccCCCCCCccchHHHHHH
Q 002003          259 FDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKL  338 (983)
Q Consensus       259 ~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf~ly~~lr~~~~~~~~~~~~~l~~~al~c  338 (983)
                      |++.||+                  +||.+|||+|++||..|.|++++++||++|..+           ||+++..+++|
T Consensus       228 Gss~DEs------------------sed~ctVQIPTsWRs~f~d~stlqlfFdly~sl-----------p~~~S~~alsc  278 (1082)
T KOG1410|consen  228 GSSTDES------------------SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSL-----------PPELSELALSC  278 (1082)
T ss_pred             ccccccc------------------cccccceecCcHHHHHhcCchHHHHHHHHhccC-----------CchhhHHHHHH
Confidence            9999998                  999999999999999999999999999999884           68899999999


Q ss_pred             HHHHHhccCCccCCCChhhHHHHHHHHHHhhhhhcCChhhhHHHhhhCCCh-hhHHHHHHHHHHHHhhcChhhHHHhhhc
Q 002003          339 IVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE-SEMLDGCRALLSIATVTTPFVFDRLLKS  417 (983)
Q Consensus       339 L~qLaSl~~~~f~~~~~~~r~~yl~~~l~~~~~il~~~~~~~~~~~~gl~~-~~~~e~cr~L~rL~~~~~~~~l~~l~~s  417 (983)
                      |+|+||+||++|++.   +|.+|+++++.|++.|+++|.        |+++ .|||||||+|+||++||++.++..+.+ 
T Consensus       279 lvqlASvRRsLFN~a---eRa~yl~~Lv~Gvk~il~np~--------~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~-  346 (1082)
T KOG1410|consen  279 LVQLASVRRSLFNGA---ERAKYLQHLVEGVKRILENPQ--------GLSDPANYHEFCRLLARLKTNYQLGELVKVEC-  346 (1082)
T ss_pred             HHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHhCCc--------CCCCcchHHHHHHHHHHHHhhhhhHhhhccCC-
Confidence            999999999999665   499999999999999999875        8977 999999999999999998777776542 


Q ss_pred             cCchhhHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHHhhhc
Q 002003          418 IRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELK  497 (983)
Q Consensus       418 ~~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~~~~~~p~~l~~~~~~I~~~yi~srL~  497 (983)
                           |-+.     +.++++||+.+++.|+|+++|++|||..|++||+|+||+|++  .|+.+.+|+|+|+++||.||++
T Consensus       347 -----Y~e~-----irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyvk~~--~phlLd~y~PeIt~afi~SRl~  414 (1082)
T KOG1410|consen  347 -----YPEV-----IRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYVKNT--EPHLLDTYCPEITKAFITSRLQ  414 (1082)
T ss_pred             -----cHHH-----HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCcccCC--ChHHHhhhcHHHHHHHHHHHhh
Confidence                 3332     678999999999999999999999999999999999999875  6888999999999999999999


Q ss_pred             cccccccCCCcccchhhccHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcc--cCCCCc--chhhH-HHHHH
Q 002003          498 VASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQG--RGMIDP--TETLE-ELYSL  572 (983)
Q Consensus       498 ~~~~~~~~d~d~de~~e~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~--~~~~~~--~~~~E-~L~WL  572 (983)
                      .++....|+   -|++.||.....+||++++.||||.|++||.+|+++|++.++.|++.  .++.++  ..+.| +|.||
T Consensus       415 sV~~ivrd~---~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wl  491 (1082)
T KOG1410|consen  415 SVEIIVRDG---LDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWL  491 (1082)
T ss_pred             hhheecccC---CCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhh
Confidence            998877544   33456677799999999999999999999999999999999999874  233333  45777 89999


Q ss_pred             HHHHHhHhccCCCCCccccchhhhhhhhhhhhhccChH-HHHHHHHHHHHHHhcCccCcccCCCHHHHHHHHHHHHHHHH
Q 002003          573 LLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPV-VLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQ  651 (983)
Q Consensus       573 v~i~G~~Lad~~~gE~~~iP~~i~~~~~~~~~~~~d~v-~~L~~~vl~l~~~~l~~~~~~~~~Sp~L~~a~lwFl~~~~~  651 (983)
                      |+|+|.++++.+.+           .|   .+ ++|.+ ++|+++|+++.... |++.. .....+++.+++|||++|||
T Consensus       492 v~lvgtvV~gk~t~-----------~S---td-~~d~mDgEL~arvlql~nlm-dsr~~-~~~n~rle~ail~f~eqFRk  554 (1082)
T KOG1410|consen  492 VYLVGTVVGGKTTA-----------TS---TD-EHDAMDGELSARVLQLVNLM-DSRLP-LKGNERLELAILHFLEQFRK  554 (1082)
T ss_pred             HHHhHHHhcceecc-----------cc---cc-hhhhhhhHHHHHHHHHHHhh-hcccc-hhhhHHHHHHHHHHHHHHHH
Confidence            99999999987642           11   22 44666 99999999999985 76553 44668899999999999999


Q ss_pred             hhcCCccccccCCCCcCCCCCccccccchhhHHHhhhcCCCChhhHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHh
Q 002003          652 TYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALV  731 (983)
Q Consensus       652 ~Yl~~~~~~~~~~~~~~~~~~y~~~s~~~~~~L~~~fg~~~~~~~vl~~lv~ki~~nL~~w~~e~~vi~~t~~~LL~~L~  731 (983)
                      +|++++.. +       +++.|.+        +.+.+|.+ ++..++++||+||.+||++|++.++|+..|+ +||++|+
T Consensus       555 ~YvgDQ~~-r-------sSkvY~r--------l~e~Lgi~-de~~~L~viv~KI~TNLK~w~~~e~vi~~tL-slf~dLs  616 (1082)
T KOG1410|consen  555 AYVGDQIQ-R-------SSKVYAR--------LSEVLGIT-DESDVLGVIVGKILTNLKYWGRNEPVISLTL-SLFNDLS  616 (1082)
T ss_pred             HHHHHHHH-H-------HHHHHHH--------HHHHhCCC-chHHHHHHHHHHHHhhcccccCCchHHHHHH-HHHHHHh
Confidence            99999843 3       4556666        88999999 9999999999999999999999999999999 9999999


Q ss_pred             ccccchhhhhcchHHHHHHHHhhccc-cccccc-----chhhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHH
Q 002003          732 RRKNVCVHLVALGSWRELASAFANDK-TLILLN-----STNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVEL  805 (983)
Q Consensus       732 ~~~~~~~~l~~~~~~~~L~~~~~~~~-~~~~l~-----~~~~~~l~~aL~~~~~~~~d~~~~~~~f~~~~~pl~~~~~~l  805 (983)
                      .|++.+++|+++|+++++++||+++| ||++..     .+.|++||.||+|+  .++|.++++..|++||.||++.|+.+
T Consensus       617 ~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rL--l~~d~sede~~fe~fm~PLt~~fe~v  694 (1082)
T KOG1410|consen  617 LGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRL--LMVDLSEDEDMFERFMLPLTDAFEGV  694 (1082)
T ss_pred             hhHHHHHHHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHH--HhhcccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 898876     23468899999999  88888888999999999999999988


Q ss_pred             hCCCCcccccCchhHHHHHHHHHHHhhchhhccCCCcH-HHHHHHHHh-hHHHHHHHHHHhccchHHHHHHHHHHHHHHh
Q 002003          806 SGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQ-KAIYEMGFS-VMNPVLLLLEVYKHESAVVYLLLKFVVDWVD  883 (983)
Q Consensus       806 ~~~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~~~-~~lf~~i~~-~l~~l~~l~~~y~~~p~Vv~~iLkff~elv~  883 (983)
                      .+..+- +.+.++++|..++|++|||||||.|+++|+. .+||||+|| ++|.+.+.++.|.++|+|++|||||++|+|+
T Consensus       695 ~~~~~n-n~f~ee~vK~~liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~  773 (1082)
T KOG1410|consen  695 LQVFQN-NCFEEEQVKRILIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQ  773 (1082)
T ss_pred             HHHhcc-ccccHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHh
Confidence            763221 3578999999999999999999999999966 599999999 6899999999999999999999999999999


Q ss_pred             hhccc----cCccchHHHHHHHHHHHHHHhccc--CCccccchhhhhhhhhhHHHHHHHHHhhhcCCCcceeEeeeee--
Q 002003          884 GQISY----LEVQETNIVIDFCTRLLQLYSSHN--IGKVQFWYIVVSTKSMLVLIIFVMHSNLLFTAQISVINIFIYG--  955 (983)
Q Consensus       884 ~~~~~----l~~~~~~~Lf~~~~~li~~Y~~~~--~~~~~~~~~~~~~k~k~i~~~~~iL~~~l~~~~v~~~~~~lyG--  955 (983)
                      |+.++    +++|||++||||++|++.+||++.  ++.++.++ +|++|||||++||.||+|+|+|+|||||||+|||  
T Consensus       774 NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdq-iY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~  852 (1082)
T KOG1410|consen  774 NRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQ-IYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDS  852 (1082)
T ss_pred             hhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcchhh-hHHHHhcCceehHHHHHHHhhcCccccceeeeeCch
Confidence            99885    459999999999999999999995  45566555 8999999999999999999999999999999999  


Q ss_pred             ------------ccc---HHHHHhchhhhHHHHHHHHHh
Q 002003          956 ------------HMS---LLLLLLHSIHCGEVYKAFRSI  979 (983)
Q Consensus       956 ------------l~~---~dll~~~p~l~~~yy~l~~~~  979 (983)
                                  +.+   .|+|.| |||+++||.|++++
T Consensus       853 ~l~daL~~fvKm~lsIp~sD~l~Y-~Klsqsyy~llE~l  890 (1082)
T KOG1410|consen  853 ALDDALQTFVKMLLSIPHSDLLSY-RKLSQSYYNLLEVL  890 (1082)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHhH-HHHHHHHhhHHHHH
Confidence                        223   399999 99999999999986

>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		983
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	6e-09
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	2e-08
2x19_B		963	Importin-13; nuclear transport, protein transport;	2e-07
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	2e-07
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	7e-07
2x1g_F		971	Cadmus; transport protein, developmental protein,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 78.0 bits (191), Expect = 1e-14
 Identities = 112/680 (16%), Positives = 189/680 (27%), Gaps = 209/680 (30%)

Query: 281 SSKRSECIIVQPGPAWCDALISSGHIVWLLNLY-SALRQKFSSEG----Y-WLDCPIAVS 334
           S +  + II+       DA+  +  + W L      + QKF  E     Y +L  PI   
Sbjct: 47  SKEEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 335 AR-------KLIVQLCSL--TGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIE- 384
            R         I Q   L     VF   N    + +L +L   +LE     +V+   +  
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLG 160

Query: 385 SGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGT--LTLLSNLMCEVVKVLMMNN 442
           SGK+    LD C                  ++    F    L L  N       + M+  
Sbjct: 161 SGKT-WVALDVCL--------------SYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQK 204

Query: 443 TEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLE-VRNAAASLF-------ALIVES 494
                        LL        S      N+ L +  ++     L         L+V  
Sbjct: 205 -------------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-- 249

Query: 495 ELKVASASAMDD--NGEFNYLQASISAMDERLSSYALIA---RAAIDATVPLLTRLFSER 549
                    + +  N +      + +A +  LS   L+    +   D      T   S  
Sbjct: 250 ---------LLNVQNAK------AWNAFN--LSCKILLTTRFKQVTDFLSAATTTHIS-- 290

Query: 550 FARLHQGRGMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAK-H 608
              L      + P E    L    L       D    ++P              E    +
Sbjct: 291 ---LDHHSMTLTPDEVKS-LLLKYL-------DCRPQDLPR-------------EVLTTN 326

Query: 609 PVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLC 668
           P  L   SII  AE   D  A              W    W       L    +SS    
Sbjct: 327 PRRL---SII--AESIRDGLAT-------------W--DNWKHVNCDKLTTIIESS---- 362

Query: 669 HDTGYQHQSSTSRKAL---LSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQ 725
                        + +   LS F               I    L     +    +     
Sbjct: 363 ----LNVLEPAEYRKMFDRLSVFPPS----------AHIPTILLSLIWFDVIKSD--VMV 406

Query: 726 LLHALVRRKNVCVHLVALGSWRELASAFANDKTL-ILLNSTNQRSLAQTLVLSAYGMRNS 784
           +++ L +       LV      + ++       L + +   N+ +L +++V   Y +  +
Sbjct: 407 VVNKLHKYS-----LVE--KQPKESTISIPSIYLELKVKLENEYALHRSIV-DHYNIPKT 458

Query: 785 ESSNQYVRD---------LTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAA 835
             S+  +           +  H     +E   +  L        + L    L +++R  +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKN--IEHPERMTL-----FRMVFLDFRFLEQKIRHDS 511

Query: 836 NATEPRTQKAIYEMGFSVMNPVLLLLEVYK--------HESAVVYLLLKFVVDWVDGQIS 887
            A              S++N  L  L+ YK            +V  +L F          
Sbjct: 512 TAWNASG---------SILN-TLQQLKFYKPYICDNDPKYERLVNAILDF---------- 551

Query: 888 YLEVQETNIVIDFCTRLLQL 907
            L   E N++    T LL++
Sbjct: 552 -LPKIEENLICSKYTDLLRI 570

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		983
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.96
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.96
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.96
2x1g_F		971	Cadmus; transport protein, developmental protein,	99.96
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.65
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	99.57
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.38
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.04
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.93

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

Probab=100.00  E-value=2.7e-31  Score=337.34  Aligned_cols=639  Identities=11%  Similarity=0.155  Sum_probs=427.0

Q ss_pred             CCCChhhHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCChHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCC
Q 002003           21 GPADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSF   98 (983)
Q Consensus        21 ~~md~~~l~~~~~~lE~~~~~ly~~~~--r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~y~~f~A~~~L~~~v~~~W~~   98 (983)
                      ++||   +    ++||++++.+|.|.+  |++|+++|.+|+++|++|..|..||+++++++++|+|+++|++.|.++|..
T Consensus        11 ~~~d---v----~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~   83 (1023)
T 4hat_C           11 NDLD---I----ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL   83 (1023)
T ss_dssp             SCCC---H----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             CCCC---H----HHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence            5677   3    668999999999864  899999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHcCCCC-----hhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHH
Q 002003           99 LTADEKKSLIGFCLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIG  173 (983)
Q Consensus        99 l~~~~r~~lr~~ll~yl~~~~~~l-----~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~ig  173 (983)
                      +++++|..||+++++++.+..++.     +++|++|++++++.|+|++|++.    |++++.++.+.++  .++.++..+
T Consensus        84 L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~----Wp~~l~dL~~~l~--~~~~~~~~~  157 (1023)
T 4hat_C           84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN----WPEFIPELIGSSS--SSVNVCENN  157 (1023)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHTT--TCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhh----chHHHHHHHHHhc--CCHHHHHHH
Confidence            999999999999999998864222     58999999999999999999974    9999999999997  467889999


Q ss_pred             HHHHHHHHhhhCCCCCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHhc
Q 002003          174 INFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQIL  253 (983)
Q Consensus       174 l~iL~~lv~Efs~~~ss~~gl~~~~Hrk~~~sf~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~L  253 (983)
                      +.+|..|.+|.......  .++-.++++.+..++.. ++.||.++.++|...           ....++..+|+++..++
T Consensus       158 L~iL~~L~EEV~~~~~~--~l~~~r~~~lk~~l~~~-~~~I~~ll~~iL~~~-----------~~~~l~~~~L~~l~s~l  223 (1023)
T 4hat_C          158 MIVLKLLSEEVFDFSAE--QMTQAKALHLKNSMSKE-FEQIFKLCFQVLEQG-----------ASSSLIVATLESLLRYL  223 (1023)
T ss_dssp             HHHHHHHHHHHHTSCTT--TSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC-----------SSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhc--cchHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHHH
Confidence            99999999996442211  34567888889999765 899999988888641           13467899999999999


Q ss_pred             ccccccCCCCCcccccccccccccccCCCCcccccccCCCccchHhhcccchHHHHH-HHHHHHHhccccCCCCCCccch
Q 002003          254 NWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLL-NLYSALRQKFSSEGYWLDCPIA  332 (983)
Q Consensus       254 swdF~~~~~d~~~~~~~~~~~~~~~~~~~~s~~~~t~~~p~~Wr~~l~~~~~l~llf-~ly~~lr~~~~~~~~~~~~~l~  332 (983)
                      +|...+.                                       +.++++++++| .+..             ++.+.
T Consensus       224 ~WI~i~~---------------------------------------i~~~~ll~~l~~~~L~-------------~~~~r  251 (1023)
T 4hat_C          224 HWIPYRY---------------------------------------IYETNILELLSTKFMT-------------SPDTR  251 (1023)
T ss_dssp             TTSCTHH---------------------------------------HHSSSHHHHHHTHHHH-------------SHHHH
T ss_pred             HhCCHHH---------------------------------------hcchhHHHHHHHHHcC-------------CHHHH
Confidence            9976653                                       45667889888 4421             26799


Q ss_pred             HHHHHHHHHHHhccCCccCCCChhhHHHHHHHHHHhh-----hhhcCChhhhHHHhhhCC-Chhh-HHHHHHHHHHHHhh
Q 002003          333 VSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGI-----LEWVDPPDVVAQAIESGK-SESE-MLDGCRALLSIATV  405 (983)
Q Consensus       333 ~~al~cL~qLaSl~~~~f~~~~~~~r~~yl~~~l~~~-----~~il~~~~~~~~~~~~gl-~~~~-~~e~cr~L~rL~~~  405 (983)
                      ..|.+||.++.+.+.+  +++.  ...+.+..++..+     ..++++......+...|- .+.+ +..+||++..+...
T Consensus       252 ~~A~ecL~eIv~~~~~--~~~~--~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~  327 (1023)
T 4hat_C          252 AITLKCLTEVSNLKIP--QDND--LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLAR  327 (1023)
T ss_dssp             HHHHHHHHHHHTSCCC--SSCH--HHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccccC--CchH--HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence            9999999999986531  1111  1223555454444     334443333344444443 2334 44689998888777


Q ss_pred             cChhhHHHhhhccCchhhHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHH
Q 002003          406 TTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAA  485 (983)
Q Consensus       406 ~~~~~l~~l~~s~~~~~~l~~L~~Lt~~~i~~~~~~~~~~~~~~~es~~~LL~~W~~lv~~~~~~~~~~~~p~~l~~~~~  485 (983)
                      |. ..+.    ..  ..+.+.+..+...++....+    +   -.+.+..++++|..+.+++-.   +.........+..
T Consensus       328 ~~-~li~----~~--~~~~~~l~~~l~~Ll~~~~~----~---d~ei~~~tl~FW~~L~~~l~~---e~~~~~~~~~~~~  390 (1023)
T 4hat_C          328 NR-ALLE----SD--ESLRELLLNAHQYLIQLSKI----E---ERELFKTTLDYWHNLVADLFY---EPLKKHIYEEICS  390 (1023)
T ss_dssp             HG-GGGT----SC--GGGHHHHHHHHHHHHHHTTS----S---CHHHHHHHHHHHHHHHHHHTT---STTTGGGGHHHHH
T ss_pred             HH-HHHh----CC--cchhHHHHHHHHHHHHhhCC----C---cHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHH
Confidence            74 1121    11  11111111111112221111    1   258899999999999986421   1001111223345


Q ss_pred             HHHHHHHHhhhccccccc--cCC-Ccc-cch--hhccHHHHHHHHHHHHHHHHHcHhhhHHHHHHHHHHHHHHHhcccCC
Q 002003          486 SLFALIVESELKVASASA--MDD-NGE-FNY--LQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGM  559 (983)
Q Consensus       486 ~I~~~yi~srL~~~~~~~--~~d-~d~-de~--~e~d~~~~~eqL~~ia~l~R~~~~~t~~lL~~l~~~~~~~l~~~~~~  559 (983)
                      ++.... -.|+..|+...  .+| .+. +|.  +.|+.+.|.+-=+.+..++.+.+..+.+.+.+.+.+.+.      ++
T Consensus       391 ~L~~vl-i~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~------~~  463 (1023)
T 4hat_C          391 QLRLVI-IENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID------GS  463 (1023)
T ss_dssp             HHHHHH-HHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHS------ST
T ss_pred             HHHHHH-HHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc------CC
Confidence            666663 46777776321  111 111 010  113334554333777888888888888888877755432      11


Q ss_pred             CCcchhhHHHHHHHHHHHhHhccCCCCCccccchhhhhhhhhhhhhccChHHHHHHHHHHHHHHhcCccCcccCCCHHHH
Q 002003          560 IDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLM  639 (983)
Q Consensus       560 ~~~~~~~E~L~WLv~i~G~~Lad~~~gE~~~iP~~i~~~~~~~~~~~~d~v~~L~~~vl~l~~~~l~~~~~~~~~Sp~L~  639 (983)
                       ++  -+..+-=.++..|++..+..+                  +.....+..++.-+++++...  .+..   -.+.+.
T Consensus       464 -~~--~W~~~EA~~~a~gaIa~~~~~------------------~~e~~~l~~vi~~Ll~l~~~~--~~~d---~k~~v~  517 (1023)
T 4hat_C          464 -EW--SWHNINTLSWAIGSISGTMSE------------------DTEKRFVVTVIKDLLDLCVKK--RGKD---NKAVVA  517 (1023)
T ss_dssp             -TC--CHHHHHHHHHHHHHTTTSSCH------------------HHHHHHHHHHHHHHHHHHHHC--CSHH---HHHHHH
T ss_pred             -CC--CHHHHHHHHHHHHHHHcCCCc------------------hhHHHHHHHHHHHHHHhhhcc--ccCc---chHHHH
Confidence             11  133344456667775432210                  001122345555566665532  1110   135677


Q ss_pred             HHHHHHHHHHHHhhcCCccccccCCCCcCCCCCccccccchhhHHHhhhcCCCChhhHHHHHHHHHHHhccCCCCchhHH
Q 002003          640 EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQ  719 (983)
Q Consensus       640 ~a~lwFl~~~~~~Yl~~~~~~~~~~~~~~~~~~y~~~s~~~~~~L~~~fg~~~~~~~vl~~lv~ki~~nL~~w~~e~~vi  719 (983)
                      .+.+|.++|+..                               ++..       +...|.-++++++.-+.  ...++|.
T Consensus       518 ~t~~~~lGry~~-------------------------------wl~~-------~~~~L~~vl~~L~~~l~--~~~~~v~  557 (1023)
T 4hat_C          518 SDIMYVVGQYPR-------------------------------FLKA-------HWNFLRTVILKLFEFMH--ETHEGVQ  557 (1023)
T ss_dssp             HHHHHHHHTCHH-------------------------------HHHH-------CHHHHHHHHHHHHHHTT--CSCHHHH
T ss_pred             HHHHHHHHHHHH-------------------------------HHhc-------cHHHHHHHHHHHHHHhh--cCCHHHH
Confidence            789999988542                               2221       11234445555555441  1246799


Q ss_pred             HHHHHHHHHHHhccccchh-hhhc------chHHHHHHHHhhcccccccccchhhHHHHHHHHHHhhcCCCchhhhHHHH
Q 002003          720 ELTCNQLLHALVRRKNVCV-HLVA------LGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVR  792 (983)
Q Consensus       720 ~~t~~~LL~~L~~~~~~~~-~l~~------~~~~~~L~~~~~~~~~~~~l~~~~~~~l~~aL~~~~~~~~d~~~~~~~f~  792 (983)
                      ..+| .-|..++..   |+ .+..      .|.+..|++....  -+..++++.+..+|++++.+....++...+.+++.
T Consensus       558 ~~A~-~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~--~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~  631 (1023)
T 4hat_C          558 DMAC-DTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQK--TTADLQPQQVHTFYKACGIIISEERSVAERNRLLS  631 (1023)
T ss_dssp             HHHH-HHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHH--HHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence            9999 899999886   33 3433      4567777765521  13356677788999999999988888777888999


Q ss_pred             HHHHHHHHHHHHHhC----CCCcccccCchhHHHHHHHHHHHhhchhhccCCC
Q 002003          793 DLTRHATAYLVELSG----KNDLKNVSQQPDIILLVSCLLERLRGAANATEPR  841 (983)
Q Consensus       793 ~~~~pl~~~~~~l~~----~~~~~~~~~~~~vk~~i~~ll~~LrGia~a~~~~  841 (983)
                      .+|.|+.+++.++.+    +|   ....+++....+..+||++..++.+....
T Consensus       632 ~L~~~~~~~~~~l~~~~~~~~---~~~~d~~~~~~l~~il~~~~~v~~~lg~~  681 (1023)
T 4hat_C          632 DLMQLPNMAWDTIVEQSTANP---TLLLDSETVKIIANIIKTNVAVCTSMGAD  681 (1023)
T ss_dssp             HHTHHHHHHHHHHHHHHHHCT---TGGGCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHhHHHHHHHHHHHHhcCc---hhhcCHHHHHHHHHHHHHHHHHHHHhcHH
Confidence            999999999999974    33   24456778888999999999888876653

PyMOL of 4hat

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		983
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.43
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.19
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.5
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.31

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=7.3e-09  Score=128.14  Aligned_cols=146  Identities=10%  Similarity=0.138  Sum_probs=125.4

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCChHHHHHHHHhcCCch-hHHHHHHHHHHHHHhhccCC------CCHHHHH
Q 002003           33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENSQVA-NARFQAAAAIRDAAMREWSF------LTADEKK  105 (983)
Q Consensus        33 ~~lE~~~~~ly~~~~r~~Ae~~L~~f~~~~~~~~~c~~ILe~S~~~-y~~f~A~~~L~~~v~~~W~~------l~~~~r~  105 (983)
                      +++-++..+-..|..|++||+.|.++.++|+.+..+..|+.+.+.+ .++..|+-.|++.|.+.|..      +|+++|.
T Consensus         5 ~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~   84 (959)
T d1wa5c_           5 ETVAKFLAESVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVE   84 (959)
T ss_dssp             HHHHHHHHHTTSGGGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHH
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHH
Confidence            4455555554455559999999999999999999999999877765 69999999999999999964      9999999


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHhhccCCCCCCchhhHHHHHHHHhcccCCchhHHHHHHHHHHHHhhhC
Q 002003          106 SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS  185 (983)
Q Consensus       106 ~lr~~ll~yl~~~~~~l~~~V~~~l~~~la~I~K~gW~d~~~~~~~~~~~~v~~~l~~~~s~~~~~igl~iL~~lv~Efs  185 (983)
                      .||+.+++.+.+    .++-++++++.+++.|++.+|++    +|+++++.+.+.+++ +++.....|+.+|..++.++.
T Consensus        85 ~Ik~~ll~~l~~----~~~~ir~~l~~~i~~I~~~d~p~----~Wp~ll~~l~~~l~s-~~~~~~~~~L~~l~~i~k~~~  155 (959)
T d1wa5c_          85 LIKKEIVPLMIS----LPNNLQVQIGEAISSIADSDFPD----RWPTLLSDLASRLSN-DDMVTNKGVLTVAHSIFKRWR  155 (959)
T ss_dssp             HHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHTTCCS-SCTTHHHHHHHHHHHHHGGGT
T ss_pred             HHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhCcc----ccHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence            999999998864    34679999999999999999987    499999999999975 677888899999999999986


Q ss_pred             CC
Q 002003          186 PS  187 (983)
Q Consensus       186 ~~  187 (983)
                      ..
T Consensus       156 ~~  157 (959)
T d1wa5c_         156 PL  157 (959)
T ss_dssp             TS
T ss_pred             hh
Confidence            53

PyMOL of d1wa5c_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure