Citrus Sinensis ID: 002017
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 981 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LF41 | 1038 | Probable ubiquitin conjug | yes | no | 0.986 | 0.932 | 0.684 | 0.0 | |
| A5PKG6 | 1067 | Ubiquitin conjugation fac | yes | no | 0.392 | 0.360 | 0.395 | 2e-76 | |
| Q14139 | 1066 | Ubiquitin conjugation fac | yes | no | 0.392 | 0.361 | 0.395 | 6e-76 | |
| Q5R9G3 | 1066 | Ubiquitin conjugation fac | yes | no | 0.392 | 0.361 | 0.395 | 8e-76 | |
| Q6P7A2 | 1066 | Ubiquitin conjugation fac | yes | no | 0.392 | 0.361 | 0.398 | 2e-75 | |
| Q9ES00 | 1173 | Ubiquitin conjugation fac | yes | no | 0.405 | 0.339 | 0.374 | 3e-73 | |
| O95155 | 1302 | Ubiquitin conjugation fac | no | no | 0.397 | 0.299 | 0.380 | 9e-73 | |
| P54860 | 961 | E4 ubiquitin-protein liga | yes | no | 0.391 | 0.399 | 0.389 | 8e-69 | |
| Q9HE05 | 1010 | Ubiquitin conjugation fac | yes | no | 0.839 | 0.815 | 0.258 | 4e-66 | |
| Q09349 | 980 | Probable ubiquitin conjug | yes | no | 0.703 | 0.704 | 0.238 | 3e-48 |
| >sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1403 bits (3632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/1051 (68%), Positives = 830/1051 (78%), Gaps = 83/1051 (7%)
Query: 1 MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
MAT+KPQRSP EIEDIILRKIF VTL E +TD+DPRI YLE+TAAE+LSEGK++ LSRDL
Sbjct: 1 MATSKPQRSPAEIEDIILRKIFYVTLTE-STDSDPRIVYLEMTAAEILSEGKELLLSRDL 59
Query: 61 MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
MERVL+DRLSG+F AEPPF YLI C+RRA+DE KKI +MKDKNLRSE+E V KQAKK+
Sbjct: 60 MERVLIDRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLA 119
Query: 121 VSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGG-IDGFGNSTSSGS 179
VSYCRIHL NPD FG+++ + ++N K ++SP+LP IFAEVG G +D FG ++SSG
Sbjct: 120 VSYCRIHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFG-ASSSGV 178
Query: 180 QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGV 239
Q PPGFL EFF+++DFD+LD ILK LYE+LR +V+NVS LG+FQ PLRAL YLVS PVG
Sbjct: 179 QAPPGFLDEFFKDSDFDSLDSILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGA 238
Query: 240 KSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRR 299
KSLV+H+WW+P+ Y+NGR +E+TSILGPFFH+SALPD+ +FKSQPDVGQQCFSEAS RR
Sbjct: 239 KSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERR 298
Query: 300 PADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359
PADLLSSF+TIK M LY L DVL+ LLK+TDTRE VL++LAEVIN N+SRAHIQV+P
Sbjct: 299 PADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANASRAHIQVDP 358
Query: 360 LSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV 419
+SCASSGMFVNLSAVMLRLC+PFLD +LTKRDKIDPKY F RL L LTALHASSEEV
Sbjct: 359 VSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEV 418
Query: 420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
+EWI K A A+ + + E++LLQS+EATSSS AS G+ A +KY F
Sbjct: 419 TEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNAS------GQNAK---SATKYTF 469
Query: 480 ICECFFMTARVL-----------------------NLGLLKAFSD---FKHLVQDISRAE 513
ICECFFMTARVL NL LKA D L DISR E
Sbjct: 470 ICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDISRME 529
Query: 514 DTLATLKATQGQTPSSQL------------------------------------NLEITR 537
L L + + +Q+ +E +
Sbjct: 530 KEL-ELSSQEKLCHEAQILRDGDFIQRALSFYRLMVVWLVGLVGGFKMPLPSTCPMEFSC 588
Query: 538 IEKEIELSSQEKLCYEAQILR-------DDFMNFIIMFMASPKYIRNPYLRSKMVEVLNC 590
+ + + E L + ++I + DDFMNFIIMFMASP+Y+RNPYLR+KMVEVLNC
Sbjct: 589 MPEHFVEDAMELLIFASRIPKALDGVPLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNC 648
Query: 591 WMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELL 650
WMPR S SSSAT+TLFEGHQ+SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELL
Sbjct: 649 WMPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELL 708
Query: 651 EYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNT 710
EYLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNT
Sbjct: 709 EYLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNT 768
Query: 711 AEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVA 770
AEWE+RP QERQERTRLFHSQENI+RIDMKLANEDV+MLAFTSE+I APFLLPEM+ERVA
Sbjct: 769 AEWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVA 828
Query: 771 SMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSD 830
+MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYV+LARGDT N+FP AISSD
Sbjct: 829 NMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSD 888
Query: 831 GRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDP 890
GRSYNEQLF+A ADVL +IGE+GRIIQEF+ELG KAKAAASEA+DAEAALG+IPDEFLDP
Sbjct: 889 GRSYNEQLFNAGADVLRRIGEEGRIIQEFMELGTKAKAAASEALDAEAALGEIPDEFLDP 948
Query: 891 IQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 950
IQYTLM+DPVILPSSRITVDRP+IQRHLLSD DPFNR+HLT+DMLIP+ ELKAKI+EF+
Sbjct: 949 IQYTLMRDPVILPSSRITVDRPIIQRHLLSDNHDPFNRAHLTSDMLIPDIELKAKIDEFV 1008
Query: 951 KSQGLKRHGEGLNIQSIKDTIQTTNGDMLID 981
KS K+ G + S K+ IQTTN DMLID
Sbjct: 1009 KSHQSKKRTSGED-SSNKERIQTTNSDMLID 1038
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Arabidopsis thaliana (taxid: 3702) |
| >sp|A5PKG6|UBE4A_BOVIN Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q14139|UBE4A_HUMAN Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5R9G3|UBE4A_PONAB Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6P7A2|UBE4A_RAT Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9ES00|UBE4B_MOUSE Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=3 | Back alignment and function description |
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| >sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1 | Back alignment and function description |
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| >sp|P54860|UFD2_YEAST E4 ubiquitin-protein ligase UFD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9HE05|UFD2_SCHPO Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufd2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans GN=ufd-2 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 981 | ||||||
| 42567869 | 1038 | putative ubiquitin conjugation factor E4 | 0.986 | 0.932 | 0.684 | 0.0 | |
| 110735116 | 1037 | UFD2 [synthetic construct] | 0.985 | 0.932 | 0.684 | 0.0 | |
| 224077680 | 930 | predicted protein [Populus trichocarpa] | 0.935 | 0.987 | 0.696 | 0.0 | |
| 326513202 | 1005 | predicted protein [Hordeum vulgare subsp | 0.911 | 0.889 | 0.559 | 0.0 | |
| 449437816 | 1043 | PREDICTED: probable ubiquitin conjugatio | 0.559 | 0.526 | 0.747 | 0.0 | |
| 359488959 | 1037 | PREDICTED: probable ubiquitin conjugatio | 0.556 | 0.526 | 0.744 | 0.0 | |
| 255584323 | 1031 | ubiquitin-protein ligase, putative [Rici | 0.549 | 0.522 | 0.702 | 0.0 | |
| 297811677 | 1038 | U-box domain-containing protein [Arabido | 0.567 | 0.536 | 0.684 | 0.0 | |
| 356551046 | 1038 | PREDICTED: probable ubiquitin conjugatio | 0.430 | 0.406 | 0.880 | 0.0 | |
| 356573130 | 1036 | PREDICTED: probable ubiquitin conjugatio | 0.430 | 0.407 | 0.875 | 0.0 |
| >gi|42567869|ref|NP_568313.2| putative ubiquitin conjugation factor E4 [Arabidopsis thaliana] gi|75174048|sp|Q9LF41.1|UBE4_ARATH RecName: Full=Probable ubiquitin conjugation factor E4; AltName: Full=Plant U-box protein 1; AltName: Full=U-box domain-containing protein 1; AltName: Full=Ubiquitin-fusion degradation protein 2-like; Short=UB fusion protein 2-like gi|9755795|emb|CAC01739.1| ubiquitin-fusion degradation protein-like [Arabidopsis thaliana] gi|332004773|gb|AED92156.1| putative ubiquitin conjugation factor E4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1403 bits (3632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/1051 (68%), Positives = 830/1051 (78%), Gaps = 83/1051 (7%)
Query: 1 MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
MAT+KPQRSP EIEDIILRKIF VTL E +TD+DPRI YLE+TAAE+LSEGK++ LSRDL
Sbjct: 1 MATSKPQRSPAEIEDIILRKIFYVTLTE-STDSDPRIVYLEMTAAEILSEGKELLLSRDL 59
Query: 61 MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
MERVL+DRLSG+F AEPPF YLI C+RRA+DE KKI +MKDKNLRSE+E V KQAKK+
Sbjct: 60 MERVLIDRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLA 119
Query: 121 VSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGG-IDGFGNSTSSGS 179
VSYCRIHL NPD FG+++ + ++N K ++SP+LP IFAEVG G +D FG ++SSG
Sbjct: 120 VSYCRIHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFG-ASSSGV 178
Query: 180 QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGV 239
Q PPGFL EFF+++DFD+LD ILK LYE+LR +V+NVS LG+FQ PLRAL YLVS PVG
Sbjct: 179 QAPPGFLDEFFKDSDFDSLDSILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGA 238
Query: 240 KSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRR 299
KSLV+H+WW+P+ Y+NGR +E+TSILGPFFH+SALPD+ +FKSQPDVGQQCFSEAS RR
Sbjct: 239 KSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERR 298
Query: 300 PADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359
PADLLSSF+TIK M LY L DVL+ LLK+TDTRE VL++LAEVIN N+SRAHIQV+P
Sbjct: 299 PADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANASRAHIQVDP 358
Query: 360 LSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV 419
+SCASSGMFVNLSAVMLRLC+PFLD +LTKRDKIDPKY F RL L LTALHASSEEV
Sbjct: 359 VSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEV 418
Query: 420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
+EWI K A A+ + + E++LLQS+EATSSS AS G+ A +KY F
Sbjct: 419 TEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNAS------GQNAK---SATKYTF 469
Query: 480 ICECFFMTARVL-----------------------NLGLLKAFSD---FKHLVQDISRAE 513
ICECFFMTARVL NL LKA D L DISR E
Sbjct: 470 ICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDISRME 529
Query: 514 DTLATLKATQGQTPSSQL------------------------------------NLEITR 537
L L + + +Q+ +E +
Sbjct: 530 KEL-ELSSQEKLCHEAQILRDGDFIQRALSFYRLMVVWLVGLVGGFKMPLPSTCPMEFSC 588
Query: 538 IEKEIELSSQEKLCYEAQILR-------DDFMNFIIMFMASPKYIRNPYLRSKMVEVLNC 590
+ + + E L + ++I + DDFMNFIIMFMASP+Y+RNPYLR+KMVEVLNC
Sbjct: 589 MPEHFVEDAMELLIFASRIPKALDGVPLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNC 648
Query: 591 WMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELL 650
WMPR S SSSAT+TLFEGHQ+SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELL
Sbjct: 649 WMPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELL 708
Query: 651 EYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNT 710
EYLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNT
Sbjct: 709 EYLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNT 768
Query: 711 AEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVA 770
AEWE+RP QERQERTRLFHSQENI+RIDMKLANEDV+MLAFTSE+I APFLLPEM+ERVA
Sbjct: 769 AEWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVA 828
Query: 771 SMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSD 830
+MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYV+LARGDT N+FP AISSD
Sbjct: 829 NMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSD 888
Query: 831 GRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDP 890
GRSYNEQLF+A ADVL +IGE+GRIIQEF+ELG KAKAAASEA+DAEAALG+IPDEFLDP
Sbjct: 889 GRSYNEQLFNAGADVLRRIGEEGRIIQEFMELGTKAKAAASEALDAEAALGEIPDEFLDP 948
Query: 891 IQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 950
IQYTLM+DPVILPSSRITVDRP+IQRHLLSD DPFNR+HLT+DMLIP+ ELKAKI+EF+
Sbjct: 949 IQYTLMRDPVILPSSRITVDRPIIQRHLLSDNHDPFNRAHLTSDMLIPDIELKAKIDEFV 1008
Query: 951 KSQGLKRHGEGLNIQSIKDTIQTTNGDMLID 981
KS K+ G + S K+ IQTTN DMLID
Sbjct: 1009 KSHQSKKRTSGED-SSNKERIQTTNSDMLID 1038
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110735116|gb|ABG89128.1| UFD2 [synthetic construct] | Back alignment and taxonomy information |
|---|
| >gi|224077680|ref|XP_002305359.1| predicted protein [Populus trichocarpa] gi|222848323|gb|EEE85870.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|326513202|dbj|BAK06841.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
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| >gi|449437816|ref|XP_004136686.1| PREDICTED: probable ubiquitin conjugation factor E4-like [Cucumis sativus] gi|449494681|ref|XP_004159617.1| PREDICTED: probable ubiquitin conjugation factor E4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|359488959|ref|XP_003633847.1| PREDICTED: probable ubiquitin conjugation factor E4-like [Vitis vinifera] gi|296082973|emb|CBI22274.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255584323|ref|XP_002532897.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527331|gb|EEF29477.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|297811677|ref|XP_002873722.1| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319559|gb|EFH49981.1| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|356551046|ref|XP_003543890.1| PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356573130|ref|XP_003554717.1| PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 981 | ||||||
| TAIR|locus:2180862 | 1038 | AT5G15400 [Arabidopsis thalian | 0.567 | 0.536 | 0.687 | 0.0 | |
| DICTYBASE|DDB_G0292264 | 1089 | nosA "U box domain-containing | 0.393 | 0.354 | 0.401 | 1.2e-119 | |
| ASPGD|ASPL0000072757 | 1095 | AN10556 [Emericella nidulans ( | 0.414 | 0.371 | 0.357 | 1.2e-97 | |
| ZFIN|ZDB-GENE-020205-1 | 1362 | ube4b "ubiquitination factor E | 0.400 | 0.288 | 0.384 | 7.3e-92 | |
| POMBASE|SPAC20H4.10 | 1010 | ufd2 "ubiquitin-protein ligase | 0.387 | 0.376 | 0.351 | 8.5e-90 | |
| FB|FBgn0028467 | 993 | CG11070 [Drosophila melanogast | 0.395 | 0.390 | 0.403 | 1.8e-89 | |
| RGD|1304738 | 1172 | Ube4b "ubiquitination factor E | 0.407 | 0.341 | 0.368 | 3.5e-87 | |
| UNIPROTKB|F1M9N5 | 1066 | Ube4a "Ubiquitin conjugation f | 0.392 | 0.361 | 0.393 | 5.4e-86 | |
| UNIPROTKB|Q14139 | 1066 | UBE4A "Ubiquitin conjugation f | 0.392 | 0.361 | 0.390 | 7.4e-86 | |
| UNIPROTKB|E2RPU3 | 1066 | UBE4A "Uncharacterized protein | 0.392 | 0.361 | 0.388 | 1.1e-85 |
| TAIR|locus:2180862 AT5G15400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1941 (688.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 392/570 (68%), Positives = 453/570 (79%)
Query: 1 MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
MAT+KPQRSP EIEDIILRKIF VTL E+T D+DPRI YLE+TAAE+LSEGK++ LSRDL
Sbjct: 1 MATSKPQRSPAEIEDIILRKIFYVTLTEST-DSDPRIVYLEMTAAEILSEGKELLLSRDL 59
Query: 61 MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
MERVL+DRLSG+F AEPPF YLI C+RRA+DE KKI +MKDKNLRSE+E V KQAKK+
Sbjct: 60 MERVLIDRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLA 119
Query: 121 VSYCRIHLANPDFFGXXXXXXXXXXXXXXXXXXXPLLPFIFAEVGGG-IDGFGNSTSSGS 179
VSYCRIHL NPD FG P+LP IFAEVG G +D FG S SSG
Sbjct: 120 VSYCRIHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFGAS-SSGV 178
Query: 180 QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGV 239
Q PPGFL EFF+++DFD+LD ILK LYE+LR +V+NVS LG+FQ PLRAL YLVS PVG
Sbjct: 179 QAPPGFLDEFFKDSDFDSLDSILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGA 238
Query: 240 KSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRR 299
KSLV+H+WW+P+ Y+NGR +E+TSILGPFFH+SALPD+ +FKSQPDVGQQCFSEAS RR
Sbjct: 239 KSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERR 298
Query: 300 PADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359
PADLLSSF+TIK M LY L DVL+ LLK+TDTRE VL++LAEVIN N+SRAHIQV+P
Sbjct: 299 PADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANASRAHIQVDP 358
Query: 360 LSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV 419
+SCASSGMFVNLSAVMLRLC+PFLD +LTKRDKIDPKY F RL L LTALHASSEEV
Sbjct: 359 VSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEV 418
Query: 420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
+EWI K A A+ + + E++LLQS+EATSSS AS G+ A +KY F
Sbjct: 419 TEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNAS------GQNAK---SATKYTF 469
Query: 480 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIE 539
ICECFFMTARVLNLGLLKA SDFKHL QDISR ED LATLKA + Q PS QL L+I+R+E
Sbjct: 470 ICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDISRME 529
Query: 540 KEIELSSQEKLCYEAQILRD-DFMNFIIMF 568
KE+ELSSQEKLC+EAQILRD DF+ + F
Sbjct: 530 KELELSSQEKLCHEAQILRDGDFIQRALSF 559
|
|
| DICTYBASE|DDB_G0292264 nosA "U box domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000072757 AN10556 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-020205-1 ube4b "ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPAC20H4.10 ufd2 "ubiquitin-protein ligase E4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0028467 CG11070 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| RGD|1304738 Ube4b "ubiquitination factor E4B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1M9N5 Ube4a "Ubiquitin conjugation factor E4 A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q14139 UBE4A "Ubiquitin conjugation factor E4 A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RPU3 UBE4A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LF41 | UBE4_ARATH | No assigned EC number | 0.6841 | 0.9867 | 0.9325 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 981 | |||
| pfam10408 | 625 | pfam10408, Ufd2P_core, Ubiquitin elongating factor | 1e-122 | |
| COG5113 | 929 | COG5113, UFD2, Ubiquitin fusion degradation protei | 9e-83 | |
| pfam10408 | 625 | pfam10408, Ufd2P_core, Ubiquitin elongating factor | 3e-50 | |
| pfam04564 | 73 | pfam04564, U-box, U-box domain | 7e-32 | |
| smart00504 | 63 | smart00504, Ubox, Modified RING finger domain | 1e-20 | |
| COG5113 | 929 | COG5113, UFD2, Ubiquitin fusion degradation protei | 4e-14 |
| >gnl|CDD|220735 pfam10408, Ufd2P_core, Ubiquitin elongating factor core | Back alignment and domain information |
|---|
Score = 385 bits (992), Expect = e-122
Identities = 138/311 (44%), Positives = 208/311 (66%), Gaps = 6/311 (1%)
Query: 559 DDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMP-RRSGSSSATATLFEGHQMSLEYLV 617
D + F I+FM SP+YI+NP+L++K+VE+L +P + + +FEGH ++ E+L+
Sbjct: 318 DSIIEFCIIFMGSPEYIKNPHLKAKLVEILFIGLPPLDNSQKGFLSDIFEGHPLAKEHLL 377
Query: 618 RNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLN 677
LLK Y+D+E TG+ TQFYDKFNIR+ I+++LEYLW+ PS+R R+ +KE ++
Sbjct: 378 PALLKFYIDVEKTGASTQFYDKFNIRYYISQILEYLWKNPSYRQQLRKESKENND-FFVR 436
Query: 678 FLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRI 737
F+N L+ND+ YLLDESL+ + E+K ++ E+ + AEWE +ER+ER E +
Sbjct: 437 FINLLLNDATYLLDESLSYLKEIKQLQKELQDRAEWESLSQEEREERESELRQLERQAKS 496
Query: 738 DMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYE 797
++LANE V +L + +I PFL PE+++R+A+MLNY L QLVGP+ +L +K+PEKY
Sbjct: 497 YLQLANETVKLLKLLTSEIPKPFLSPEIVDRLAAMLNYNLDQLVGPKCSNLKVKNPEKYG 556
Query: 798 FRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIG-EDGRII 856
F PKQLL IV IY++L+R D F A++ DGRSY+ +LF A +L +IG + I
Sbjct: 557 FDPKQLLSDIVDIYLNLSRSDE---FIEAVARDGRSYSPELFEKAERILRRIGLKSEEDI 613
Query: 857 QEFIELGAKAK 867
++F EL K +
Sbjct: 614 EKFEELANKLE 624
|
This is the most conserved part of the core region of Ufd2P ubiquitin elongating factor or E4, running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C-terminus, pfam04564, which has ligase activity. Length = 625 |
| >gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|220735 pfam10408, Ufd2P_core, Ubiquitin elongating factor core | Back alignment and domain information |
|---|
| >gnl|CDD|203049 pfam04564, U-box, U-box domain | Back alignment and domain information |
|---|
| >gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain | Back alignment and domain information |
|---|
| >gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 981 | |||
| COG5113 | 929 | UFD2 Ubiquitin fusion degradation protein 2 [Postt | 100.0 | |
| KOG2042 | 943 | consensus Ubiquitin fusion degradation protein-2 [ | 100.0 | |
| PF10408 | 629 | Ufd2P_core: Ubiquitin elongating factor core; Inte | 100.0 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 99.83 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 99.58 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 99.2 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 98.28 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 98.22 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 98.13 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.96 | |
| KOG4692 | 489 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.86 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 97.29 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 97.07 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 97.06 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 97.02 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 96.84 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 96.83 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 96.65 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.56 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 96.54 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.5 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 96.39 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 96.08 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 95.91 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 95.2 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 94.87 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.74 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 94.54 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 94.48 | |
| KOG2979 | 262 | consensus Protein involved in DNA repair [General | 94.42 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 94.17 | |
| KOG0883 | 518 | consensus Cyclophilin type, U box-containing pepti | 94.15 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 94.12 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 93.7 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 93.59 | |
| PF06416 | 113 | DUF1076: Protein of unknown function (DUF1076); In | 93.15 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 92.87 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 92.69 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 92.3 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 91.72 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.7 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 91.09 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 90.46 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.34 | |
| KOG0826 | 357 | consensus Predicted E3 ubiquitin ligase involved i | 90.21 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.65 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 87.42 | |
| KOG3113 | 293 | consensus Uncharacterized conserved protein [Funct | 87.19 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 84.96 | |
| PF02891 | 50 | zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 | 80.05 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 80.03 |
| >COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-154 Score=1296.10 Aligned_cols=842 Identities=25% Similarity=0.362 Sum_probs=743.7
Q ss_pred HHHHHHHHHHhheeeccCCCCCCCCCeeechhhHHHHhhcCCccccChhhhhHHHHHHHhCCCCCCCChhhHHHHHHHHH
Q 002017 11 EEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRA 90 (981)
Q Consensus 11 ~~~~~~~l~~if~vTl~~~~~~~~~~~~~L~~l~~el~~e~~~~~l~~d~ld~~l~erl~~~~~~~~~~~~YL~~c~~R~ 90 (981)
.+|.+++-..++.||.+|++ .+-++| +.+++..+|. .|..+.+|.+|+.+|+... ..+|.||.+||+-.
T Consensus 3 ~~~M~~ie~~~l~it~~p~D----~~~y~l--fk~~e~~~gS--~l~~n~~d~~LL~~l~~~~---nn~fsYl~~s~~fl 71 (929)
T COG5113 3 YPGMNRIELYELFITGMPAD----MDPYEL--FKEAECIRGS--YLTNNSSDNILLTLLPRYK---NNTFSYLQESAKFL 71 (929)
T ss_pred CcccchhhhhhhhcccCccc----cchhhh--cchhhccccC--ccccccHHHHHHHHccccC---CCchHHHHHHHHHH
Confidence 46999998899999999983 445777 5566666676 4677799999999999864 78899999999944
Q ss_pred HHHHHhhcCCCCccchhHHHHHHHHHHHHHHhhhHHhhcCCcccCCCCCCcccccccCCCCCCCCchhHHHhhcCCCCCC
Q 002017 91 HDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDG 170 (981)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~vsy~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~ 170 (981)
.+.++++.+ .+.......+-++.|.+++++|+|.++.+||-|...- |+ ++.-|...
T Consensus 72 ~q~~kri~k--n~~~a~s~hs~~~li~~l~~~y~g~v~~~~e~FN~e~-----i~----------~ieg~~~~------- 127 (929)
T COG5113 72 IQTIKRIVK--NPEMAGSAHSPVALIPLLTNTYGGSVFDVMECFNSEK-----IS----------EIEGMARK------- 127 (929)
T ss_pred HHHHHHhcC--CccccccccchHHHHHHHHhhccceEeehHhhcchhH-----HH----------HHHHHHHh-------
Confidence 444444433 2333344556889999999999999999999993211 11 11112211
Q ss_pred CCCCCCCCCCCChHHHHHHHHh--hccCChHHHHHHHHHHHHHHhhccccccccchHHHHHHHhhCChhHHHhhhcCCCC
Q 002017 171 FGNSTSSGSQCPPGFLKEFFEE--ADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWW 248 (981)
Q Consensus 171 ~~~s~~~~~~~~~~Fl~eli~r--~~~d~l~~vf~~~~~~l~~~~~~~s~~~~~~~~l~~L~~L~~~k~ia~~l~~~~~f 248 (981)
-+ +|-.|+.+++.| ++...++.+|.++++.+....+-+.....-..++.++..|++.||||.++.+.|.|
T Consensus 128 ------~~--~p~~fls~f~qr~l~e~~nld~lF~~~LE~l~~~~g~~~~dtV~~NVm~I~~~lv~~kPia~v~~k~p~~ 199 (929)
T COG5113 128 ------ML--LPMIFLSSFKQRQLDEASNLDNLFTSALEALTGLHGVLEEDTVLKNVMEIYWGLVNTKPIADVILKFPIY 199 (929)
T ss_pred ------cc--cHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHhhhcccchHHHHHHHHHHHHHHHhcCccHHHHhhcCccc
Confidence 11 577999999999 46666999999999999887766655323355899999999999999999999999
Q ss_pred CCCccCCCchhhhhccccccccccCCCCCCccccCCChhhhhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002017 249 IPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLAL 328 (981)
Q Consensus 249 ~p~~~~~~G~~~E~~SlLGp~f~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~i~~~~~slr~~l~~~~~~L~~I~~~L 328 (981)
.|.+ .+.+||.+|+|||+.++|++ .-+||..+|++...|+.+.+..+..+||.+|+.+++.||+|+++|
T Consensus 200 ~~t~---~p~~fe~kt~lG~i~sls~~--------~~dvA~r~~~~~~~rs~q~v~~s~~Sl~~t~s~~~d~lfqIi~~l 268 (929)
T COG5113 200 SGTN---FPCGFEYKTLLGFIESLSYK--------KCDVAARALDYLGIRSRQVVEKSRRSLRLTLSDHSDKLFQIIHSL 268 (929)
T ss_pred CCCC---CCCCCcceeecccccccchh--------hhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9864 34479999999999999999 357899999999999999999999999999999999999999999
Q ss_pred hc-CchhHHHHHHHHHHHHHhchhhccccCCCCccCchhhhHHHHHHHHHhhhhhccCCCCCcCcccccccccCCccCCC
Q 002017 329 LK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLR 407 (981)
Q Consensus 329 lr-~~~sRe~vL~w~a~~l~~N~~R~~~~~d~~~~aSDGFmlNl~~VLlrLc~PF~d~~~~K~dKID~~Y~~~~~rvdi~ 407 (981)
+| |.+.|+.+++|||.|+|+||+|++.++.-+...|||||.|++.||.||++||+|.+++|||+||..|++ ++||||+
T Consensus 269 vr~S~~lr~~~~~yfa~v~n~nh~R~~~~~~~~e~~Sdgfm~N~s~vlsRfs~pflDi~~sKID~vd~~YFn-NP~vDik 347 (929)
T COG5113 269 VRSSKELRANFMKYFAKVINVNHERSKTIFSWRENISDGFMYNMSMVLSRFSRPFLDIGCSKIDMVDKIYFN-NPRVDIK 347 (929)
T ss_pred HhccHHHHHHHHHHHHHHhccchhhccccCCHhhhcchHHHHHHHHHHHHhcccccccccchhhhHhHHhhc-CCccccc
Confidence 99 689999999999999999999999999999999999999999999999999999999999999999999 7899999
Q ss_pred CcccccCChHHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHH
Q 002017 408 SLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMT 487 (981)
Q Consensus 408 ~eTrl~a~~~e~~~~~~~~~p~~~~~~~~~~~~e~~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFItecFFLT 487 (981)
+|||+|+|+.+++.||++ ..++++||||+||||+
T Consensus 348 ~ETklN~d~k~~dsFy~K----------------------------------------------~Ae~s~NFISD~FFl~ 381 (929)
T COG5113 348 EETKLNVDEKSLDSFYTK----------------------------------------------PAEGSNNFISDIFFLY 381 (929)
T ss_pred cchhcchhhhhhhccccC----------------------------------------------ccccCCccchhhHHhH
Confidence 999999999999999952 1567889999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH-------
Q 002017 488 ARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQ-GQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRD------- 559 (981)
Q Consensus 488 ~~~lhlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~L~~------- 559 (981)
+..+|||++++..-..++.+.|+.++++++.-.... +.-...++..++.|+++.++...+...|+++.+.+.
T Consensus 382 lt~~HyGv~~tf~~~ek~g~~IrkLKE~le~e~~~~~gs~~At~lTaqlsrme~~lk~~~S~~~al~gfl~~tsl~~~~f 461 (929)
T COG5113 382 LTKIHYGVNATFTSCEKFGEYIRKLKESLEYECRLLDGSFQATRLTAQLSRMEAYLKGIDSKMSALNGFLFMTSLFADEF 461 (929)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHhHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhcc
Confidence 999999999999999999999998888887543211 111233456778899999988888888887733211
Q ss_pred ---------------------------------------------------------------------HHHHHHHHHhc
Q 002017 560 ---------------------------------------------------------------------DFMNFIIMFMA 570 (981)
Q Consensus 560 ---------------------------------------------------------------------~~~~f~i~~l~ 570 (981)
++..||.++++
T Consensus 462 ~F~~f~t~~l~rv~dp~~typf~~~~Lp~~ENap~~fk~~pe~~ie~~~ny~l~~~k~~~Spif~~~L~~l~Ef~~~vl~ 541 (929)
T COG5113 462 PFTDFMTEYLARVEDPWPTYPFYYKTLPWMENAPMTFKLIPEATIENALNYVLESIKDWRSPIFKKELEPLCEFVKIVLH 541 (929)
T ss_pred chHHHHHHHHHHhcCCCCCCCccccccchhcCCcchhhhchHHHhccHHHHHHHHHhcccCchhhccccchhhhhhhhcc
Confidence 67889999999
Q ss_pred CCCcccCchhhhhHHHHhh-hhcCCCCCCcchhHhhhhcccchHHHHHHHHHHHhhhheecCCCccchhhhhhhHHHHHH
Q 002017 571 SPKYIRNPYLRSKMVEVLN-CWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAEL 649 (981)
Q Consensus 571 s~~~ikNP~LraklvevL~-~~~p~~~g~~~~~~~lf~~~~l~~~~L~~aLm~fYidvE~TG~~~qFYdKFn~Ry~I~~I 649 (981)
+|++||||||++||+++|. +.+|.+..++|.+.++|...+++.++|+||||.|||+||+||+|+|||||||+||.|+.+
T Consensus 542 ~~~~iknp~L~~kl~~~ls~G~~~~~~~s~~~~~dif~~~kv~~r~LL~ALmaFYi~iEsTGqStqfydkfNirf~ic~~ 621 (929)
T COG5113 542 RSSAIKNPMLNRKLDYYLSLGRDEMRMESRSIIHDIFKEGKVFSRWLLPALMAFYIEIESTGQSTQFYDKFNIRFIICMM 621 (929)
T ss_pred cHhhhccHHHHHHHHHHHhcCcchhccCchHHHHHHHHhhhhhhhhhHHHHHhHheeeeccCcccceeeeccceeehhHH
Confidence 9999999999999999996 577777666778999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchhhhcCCCHHHHHHHHHHHH
Q 002017 650 LEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFH 729 (981)
Q Consensus 650 lk~LW~~~~~r~~l~~~a~~~~~~~FvrFvn~liND~t~lLDE~L~~L~~I~~~q~~~~d~~~w~~l~~eer~e~~~~l~ 729 (981)
++.+|+.|.|.+++.++.+.+ -++||||...|+||+||+|||||.+|.++|++|.+++|....+ -..|+-+|.+..++
T Consensus 622 ~~~~yK~Psy~~~L~~~~~tN-~~FFVkfda~mlndlt~lLDEal~~l~E~hniqs~Lad~~s~s-n~~e~~~elq~~la 699 (929)
T COG5113 622 KDFEYKQPSYSEGLSSIKDTN-LPFFVKFDAKMLNDLTRLLDEALKELVEEHNIQSLLADAISNS-NISERIGELQKSLA 699 (929)
T ss_pred HHHHhcCchhhhhhhhhhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccC-chhhHHHHHHHHHH
Confidence 999999999999999988774 8999999999999999999999999999999999999876544 34566678899999
Q ss_pred HhhhhhhhhhhchHHHHHHHHHhHhhhcCCCCchHHHHHHHHHHHHHHHhhcCccccccccCCCcccCCChHHHHHHHHH
Q 002017 730 SQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVC 809 (981)
Q Consensus 730 ~~e~~~rs~~~L~~etv~~l~~~T~~i~~~F~~peiv~RlA~MLny~L~~LvGpk~~~LkVknpekY~F~Pk~lL~~i~~ 809 (981)
.++||||++++|++++++||+.++++||++|+.||||+|||+||||||+.||||||.+||||||++|+|+||.||+.+++
T Consensus 700 ~a~rqA~~sc~l~d~~~~lf~~~~~~iP~aF~~~EiV~rla~mLNyNL~~l~GPKC~~LkVkdP~~Y~FnaK~LL~~~~~ 779 (929)
T COG5113 700 FAKRQARNSCLLVDGCFDLFTHILDEIPDAFLVDEIVSRLARMLNYNLKILTGPKCTDLKVKDPEQYGFNAKNLLRRMVM 779 (929)
T ss_pred HHHHhhcchheecccHHHHHHHHhhccchhhhhHHHHHHHHHHHhCcchhccCCCccceeecChhhcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCchhhHhhhhcCCCCcHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCCCCC
Q 002017 810 IYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGE-DGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFL 888 (981)
Q Consensus 810 iYlnL~~~~~~~~F~~ava~D~Rsy~~~lf~~a~~il~~~~~-~~~~i~~~~~l~~~v~~~~~~~~~~e~~~~~iP~ef~ 888 (981)
+|+||+. +++||.|||.|||||+.++|.+|.+||.++.+ ++.+|+++.+|+.++++....+..+|+|+||+||||+
T Consensus 780 VYinl~~---es~FveaVA~D~rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~r~~ea~EeED~GDvPDeFl 856 (929)
T COG5113 780 VYINLRS---ESKFVEAVASDKRSFDIDFFRRALRICENKYLISESQIEELRSFINRLEKVRVIEAVEEEDMGDVPDEFL 856 (929)
T ss_pred Hhhhhcc---hHHHHHHHHcccccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchhhh
Confidence 9999985 45899999999999999999999999999988 9999999999999999988777778889999999999
Q ss_pred CCCccccccCccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHcCCCcC
Q 002017 889 DPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRH 958 (981)
Q Consensus 889 cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn~~Lk~~I~~~~~~~~~~~~ 958 (981)
||+|+++|+|||+||.||.++||+||..||+++++|||||.|||.+|++||.+||++|..|.+.++.+..
T Consensus 857 DPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~KH~ 926 (929)
T COG5113 857 DPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQKHG 926 (929)
T ss_pred CchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHHHHHHhccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999887553
|
|
| >KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38 | Back alignment and domain information |
|---|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2979 consensus Protein involved in DNA repair [General function prediction only] | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
| >PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74) | Back alignment and domain information |
|---|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3113 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
| >PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 981 | ||||
| 2qiz_A | 982 | Structure Of The Yeast U-Box-Containing Ubiquitin L | 6e-68 | ||
| 3m62_A | 968 | Crystal Structure Of Ufd2 In Complex With The Ubiqu | 8e-68 | ||
| 2qj0_A | 982 | Structure Of The Yeast U-Box-Containing Ubiquitin L | 2e-64 | ||
| 1wgm_A | 98 | Solution Structure Of The U-Box In Human Ubiquitin | 2e-21 | ||
| 2kre_A | 100 | Solution Structure Of E4bUFD2A U-Box Domain Length | 2e-13 | ||
| 2kr4_A | 85 | U-Box Domain Of The E3 Ubiquitin Ligase E4b Length | 3e-13 | ||
| 2f42_A | 179 | Dimerization And U-Box Domains Of Zebrafish C-Termi | 1e-07 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 1e-07 | ||
| 2c2v_S | 78 | Crystal Structure Of The Chip-Ubc13-Uev1a Complex L | 7e-07 | ||
| 2oxq_C | 80 | Structure Of The Ubch5 :chip U-Box Complex Length = | 1e-06 |
| >pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase Ufd2p Length = 982 | Back alignment and structure |
|
| >pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Rad23 Length = 968 | Back alignment and structure |
| >pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase Ufd2p Length = 982 | Back alignment and structure |
| >pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin Conjugation Factor E4a Length = 98 | Back alignment and structure |
| >pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain Length = 100 | Back alignment and structure |
| >pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b Length = 85 | Back alignment and structure |
| >pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179 | Back alignment and structure |
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
| >pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78 | Back alignment and structure |
| >pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 | Back alignment and structure |
|---|
Score = 572 bits (1475), Expect = 0.0
Identities = 221/1021 (21%), Positives = 397/1021 (38%), Gaps = 132/1021 (12%)
Query: 9 SPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDR 68
SPE + I +T + + L +E + +G L D ++ +L+ +
Sbjct: 2 SPEFRSMTAIEDILQITTDPS------DTRGYSLLKSEEVPQGS--TLGVDFIDTLLLYQ 53
Query: 69 LSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHL 128
L+ N + PF YL +C+RR + + K+K L + ++ ++++ Y + L
Sbjct: 54 LTEN-EKLDKPFEYLNDCFRRNQQQKRI---TKNKPNAESLHSTFQEIDRLVIGYGVVAL 109
Query: 129 ANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKE 188
+F + + I + V FL +
Sbjct: 110 QIENFCMNGA--------------FINYITGIVSNVN---------------SYTDFLSQ 140
Query: 189 F-----FEEADFDTLDPILKGLYENLRGSVLNVSALGN--FQQPLRALLYLVSFPVGVKS 241
E D L+ + L E V + + + L V+F +
Sbjct: 141 IIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESVIYNNVLTIFELFVTFKPIAEI 200
Query: 242 LVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPA 301
+ + E +ILGP +S + V + + + R
Sbjct: 201 FTKIDGFFADYS-CKPQDFERKTILGPILSLSPIE--------AAVAIRNYGDNLLRSKQ 251
Query: 302 DLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLEY------------------- 341
+++ + + L ++ L++ + ++R +++ Y
Sbjct: 252 QTAMIHESLQAEHKVVIDRLFFIVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFK 311
Query: 342 -----------------LAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVML-----RLC 379
++ S + +++ + +F++LS +
Sbjct: 312 ELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNPSLFIDLSGETRLNSDFKEA 371
Query: 380 DPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSD 439
D F D N K P ++ L L LH + K +
Sbjct: 372 DAFYDKN-RKTADSKPNFISDCFFLTLT---YLHYGLGGTLSFEEKMGSEIKALKEEIEK 427
Query: 440 GENQLLQSQEATSSSGGASEP-----SLPAGRPASIGGGKSKYPFICECF-FMTA----- 488
+ ++ G + E F F+
Sbjct: 428 VKKIAANHDVFARFITAQLSKMEKALKTTESLRFALQGFFAHRSLQLEVFDFICGASTFL 487
Query: 489 -RVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNL------EITRIEKE 541
RV++ F K + + + + P
Sbjct: 488 IRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEGPVNYSLY 547
Query: 542 IELSSQEKLCYEAQILRDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW-MPRRSGSSS 600
I + ++ F+ F M + P+ + NP+L+ K+V++L+ MP S
Sbjct: 548 ISKYQTSPIFRNPRL--GSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPG 605
Query: 601 ATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW-QVPSH 659
+FE ++ + L+ LL YV +E TGS +QFYDKFN R++I+ +LE L+ ++PS+
Sbjct: 606 FMMDIFEHDELVNKNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSY 665
Query: 660 RNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPA- 718
+N + + ++ F+ ++ND +LLDE L+ + E+ I+ E+ N A
Sbjct: 666 KNQLIWQS-QNNADFFVRFVARMLNDLTFLLDEGLSNLAEVHNIQNELDNRARGAPPTRE 724
Query: 719 QERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLL 778
+E +E S + LA++ + + S+ I A F+ PE++ R+ASMLNY L
Sbjct: 725 EEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLE 784
Query: 779 QLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQL 838
LVGP+ L +KDP+ Y F PK LLK + +Y++L+ F +A++ D RS+N L
Sbjct: 785 SLVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSEQSE---FISAVAKDERSFNRNL 841
Query: 839 FSAAADVLWKI--GEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLM 896
F A D+L + I++ + KA+ + + GD+PDEFLDP+ YT+M
Sbjct: 842 FVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIM 901
Query: 897 KDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLK 956
KDPVILP+S++ +DR I+ HLLSD+TDPFNR L + + PN EL+ KI F K + +
Sbjct: 902 KDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKEE 961
Query: 957 R 957
Sbjct: 962 A 962
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 | Back alignment and structure |
|---|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 | Back alignment and structure |
|---|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 | Back alignment and structure |
|---|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 | Back alignment and structure |
|---|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 981 | |||
| 3m62_A | 968 | Ubiquitin conjugation factor E4; armadillo-like re | 100.0 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 99.82 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 99.81 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 99.8 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 99.71 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 99.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.57 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 99.5 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 99.48 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 99.18 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 98.98 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 98.92 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 98.85 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 98.84 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 98.66 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 98.63 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 98.63 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 98.6 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 98.6 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 98.57 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 98.57 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 98.56 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 98.54 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 98.52 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 98.51 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 98.5 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 98.48 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 98.44 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 98.42 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 98.37 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 98.33 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 98.3 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 98.22 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 98.16 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 98.12 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 98.09 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 98.09 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 98.09 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 97.98 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 97.92 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 97.88 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 97.73 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 97.7 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 97.62 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 97.6 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 97.53 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 97.49 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 97.47 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 97.45 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 97.42 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 97.39 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 97.29 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 97.24 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 97.22 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 97.12 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 97.05 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 96.97 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 96.8 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 96.63 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 96.38 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 96.21 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 96.08 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 95.98 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 95.77 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 95.61 | |
| 2kkx_A | 102 | Uncharacterized protein ECS2156; methods developme | 94.41 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 94.39 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 94.18 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 93.74 | |
| 3i2d_A | 371 | E3 SUMO-protein ligase SIZ1; signal transduction, | 93.61 | |
| 4fo9_A | 360 | E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom | 93.41 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 86.84 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 84.15 |
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-200 Score=1800.35 Aligned_cols=852 Identities=28% Similarity=0.472 Sum_probs=770.1
Q ss_pred HHHHHHHHHHhheeeccCCCCCCCCCeeechhhHHHHhhcCCccccChhhhhHHHHHHHhCCCCCCCChhhHHHHHHHHH
Q 002017 11 EEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRA 90 (981)
Q Consensus 11 ~~~~~~~l~~if~vTl~~~~~~~~~~~~~L~~l~~el~~e~~~~~l~~d~ld~~l~erl~~~~~~~~~~~~YL~~c~~R~ 90 (981)
+.-.-.+|++||+||+||+. .+| .+||. +.|| ++|. .|+.|.+|+|||+||++.+ +.++||+||++||+||
T Consensus 4 ~~~~~~~l~~if~vtl~~~~-~~~--~~~~~--~~el-~~~~--~l~~d~ld~~l~e~ls~~~-~~~~p~~YL~~c~~R~ 74 (968)
T 3m62_A 4 EFRSMTAIEDILQITTDPSD-TRG--YSLLK--SEEV-PQGS--TLGVDFIDTLLLYQLTENE-KLDKPFEYLNDCFRRN 74 (968)
T ss_dssp HHHHHHHHHHHHTEESSCCS-SSS--CEECC--SCST-TCCS--CCCGGGHHHHHHHHHHTCS-SCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHeeecCccc-cCC--ceEee--HHHh-ccCC--CCChhhHHHHHHHHHhcCC-CCCCcHHHHHHHHHHH
Confidence 33345679999999999984 234 45555 5566 3554 5999999999999999977 4479999999999999
Q ss_pred HHHHHhhcCCCCccchhHHHHHHHHHHHHHHhhhHHhhcCCcccCCCCCCcccccccCCCCCCCCchhHHHhhcCCCCCC
Q 002017 91 HDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDG 170 (981)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~vsy~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~ 170 (981)
.+++|+++++ ...+++.++++++++||||||++++++||||++++ ..+++++++.+.+
T Consensus 75 ~~~~r~~~~~---~~~~~~~~~l~~~~~L~~sy~~~~l~~Pdmf~~~~--------------~~~~~~~ll~~~~----- 132 (968)
T 3m62_A 75 QQQKRITKNK---PNAESLHSTFQEIDRLVIGYGVVALQIENFCMNGA--------------FINYITGIVSNVN----- 132 (968)
T ss_dssp HHHHHHHHTS---TTGGGGHHHHHHHHHHHHHHHHHHTTCTTSSSSCC--------------HHHHHHHHHHTGG-----
T ss_pred HHHHHhcccC---CCchHHHHHHHHHHHHHHHhHHHHhcCCccCCCCc--------------hHHHHHHHHhccc-----
Confidence 9999988542 23477789999999999999999999999998643 2357888887521
Q ss_pred CCCCCCCCCCCChHHHHHHHHhhcc-CChHHHHHHHHHHH----HHHhhccccccc--cchHHHHHHHhhCChhHHHhhh
Q 002017 171 FGNSTSSGSQCPPGFLKEFFEEADF-DTLDPILKGLYENL----RGSVLNVSALGN--FQQPLRALLYLVSFPVGVKSLV 243 (981)
Q Consensus 171 ~~~s~~~~~~~~~~Fl~eli~r~~~-d~l~~vf~~~~~~l----~~~~~~~s~~~~--~~~~l~~L~~L~~~k~ia~~l~ 243 (981)
...+||.++|+|+++ |++.++|+|+|..+ +..+.++++.++ |++++++|..|+++||||++|+
T Consensus 133 ----------~~~~FL~~~i~r~~~d~~l~~~~~~~f~~l~~~i~~~l~~~~l~~~~~~~~~l~~l~~lv~~kpia~~l~ 202 (968)
T 3m62_A 133 ----------SYTDFLSQIIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESVIYNNVLTIFELFVTFKPIAEIFT 202 (968)
T ss_dssp ----------GTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSSSCCSTTCHHHHHHHHHHHHHHHTSHHHHHHGG
T ss_pred ----------chHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHhCccHHHHHHH
Confidence 235999999999954 45888888888777 555667777765 9999999999999999999999
Q ss_pred cCCCCCCCccCCCchhhhhccccccccccCCCCCCccccCCChhhhhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 002017 244 NHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGD 323 (981)
Q Consensus 244 ~~~~f~p~~~~~~G~~~E~~SlLGp~f~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~i~~~~~slr~~l~~~~~~L~~ 323 (981)
++|+|+|+.. .+|++||+.|+|||||++||++ |+|+.+||+++.++++++++++++++|++++.++++||+
T Consensus 203 ~~~~f~P~~~-~~g~~~E~~tlLGp~f~lS~l~--------~~v~~~~f~~~~~~~~~~~~~~~~sl~~~~~~~~~~L~~ 273 (968)
T 3m62_A 203 KIDGFFADYS-CKPQDFERKTILGPILSLSPIE--------AAVAIRNYGDNLLRSKQQTAMIHESLQAEHKVVIDRLFF 273 (968)
T ss_dssp GSTTSSCCTT-CCGGGHHHHSTTHHHHTCCTTS--------HHHHHHHTTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccCCCCC-ccHHHHHHHHhHHhhhhcccCC--------cchHhhcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999843 5899999999999999999994 688999999999999999999999999999999999999
Q ss_pred HHHHHhc-CchhHHHHHHHHHHHHHhchhhccccCCCCccCchhhhHHHHHHHHHhhhhhccCCCCCcCcccccccccCC
Q 002017 324 VLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSS 402 (981)
Q Consensus 324 I~~~Llr-~~~sRe~vL~w~a~~l~~N~~R~~~~~d~~~~aSDGFmlNl~~VLlrLc~PF~d~~~~K~dKID~~Y~~~~~ 402 (981)
|+++||| |+++|++||+|||+||++||+|++||+||.++||||||+|+++||+|||+||||++++|+||||++||++++
T Consensus 274 I~~~llr~s~etR~~~L~w~a~~ln~N~~R~~~q~d~~~vaSDgFm~Nl~~VL~rLc~PF~d~~~~KidkID~~Y~~~~~ 353 (968)
T 3m62_A 274 IVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNPS 353 (968)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTCGGGGSSSCCGGGSCCHHHHHHHHHHHHHHHGGGGSTTCTTGGGSCTTTTTSCC
T ss_pred HHHHHHhCCcchHHHHHHHHHHHHHhCcHHHhcCCCccccCccHHHHHHHHHHHHhhhhhccccccchheeChhhcCCCC
Confidence 9999999 899999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred -ccCCCCcccccCChHHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 002017 403 -RLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFIC 481 (981)
Q Consensus 403 -rvdi~~eTrl~a~~~e~~~~~~~~~p~~~~~~~~~~~~e~~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFIt 481 (981)
|+|+++|||||+|++++++||++.+ ....+++||||
T Consensus 354 ~ridi~~ETrlna~~~e~~~~~~~~~-------------------------------------------~~~~~~~nFIt 390 (968)
T 3m62_A 354 LFIDLSGETRLNSDFKEADAFYDKNR-------------------------------------------KTADSKPNFIS 390 (968)
T ss_dssp SSSCCTTCCBSSCCHHHHHHHHHHHC-------------------------------------------CCSSCCCCHHH
T ss_pred CCCCCChhhhhcCCHHHHHHHHhhcc-------------------------------------------cCCCCCCCchH
Confidence 5999999999999999999997532 01446899999
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCh----HHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 002017 482 ECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSS----QLNLEITRIEKEIELSSQEKLCYEAQIL 557 (981)
Q Consensus 482 ecFFLT~~~lhlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~----~~~~~l~~~~~~l~~l~~~~~~~~~~~L 557 (981)
||||||+++||||+++++.+|+++.++|++++++++++++.+. .+| .+++++++++++++++.+.++|+++.++
T Consensus 391 ecFFLT~~a~hlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~--~~p~~~~~~~~~l~~~~~~l~~~~~~k~~~~~~l~ 468 (968)
T 3m62_A 391 DCFFLTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAA--NHDVFARFITAQLSKMEKALKTTESLRFALQGFFA 468 (968)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTTCCC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999987632 233 2467899999999999999999887332
Q ss_pred HH------------------------------------------------------------------------------
Q 002017 558 RD------------------------------------------------------------------------------ 559 (981)
Q Consensus 558 ~~------------------------------------------------------------------------------ 559 (981)
++
T Consensus 469 d~~l~~~~~~F~~~~~~wL~rl~~p~~~~p~~~~~LPLp~~~~~~~~~d~~~~l~~~~P~~f~~lPE~~iEdi~d~~~F~ 548 (968)
T 3m62_A 469 HRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEGPVNYSLYI 548 (968)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCTTCCTTSSCCCSCSSCCCC----CCCHHHHHHTSCTTGGGSBTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCCCCccccccccccchhcccccCChHHhhCcHHHHHhHHHHHHHH
Confidence 21
Q ss_pred ---------------HHHHHHHHHhcCCCcccCchhhhhHHHHhhh-hcCCCCCCcchhHhhhhcccchHHHHHHHHHHH
Q 002017 560 ---------------DFMNFIIMFMASPKYIRNPYLRSKMVEVLNC-WMPRRSGSSSATATLFEGHQMSLEYLVRNLLKL 623 (981)
Q Consensus 560 ---------------~~~~f~i~~l~s~~~ikNP~LraklvevL~~-~~p~~~g~~~~~~~lf~~~~l~~~~L~~aLm~f 623 (981)
+|++|||+||+||+|||||||||||||+|+. ++|..++.+|.+.++|++||++++||+||||+|
T Consensus 549 ~r~~p~~l~~~~~l~~~v~f~i~fl~s~~~IkNP~LraklvevL~~~~~P~~~~~~g~~~~~f~~~~la~~~L~~aLm~f 628 (968)
T 3m62_A 549 SKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALLDF 628 (968)
T ss_dssp TTCTTCTTTTCTTHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSCCTTSCCCTTHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHcCCCccccccchhHHHHHHHHHhCCccccCCHHHHHHHHHHHHhcccccccCCccHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999985 789877777888999999999999999999999
Q ss_pred hhhheecCCCccchhhhhhhHHHHHHHHHHc-CChhHHHHHHHHHHHhcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002017 624 YVDIEFTGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKV 702 (981)
Q Consensus 624 YidvE~TG~~~qFYdKFn~Ry~I~~Ilk~LW-~~~~~r~~l~~~a~~~~~~~FvrFvn~liND~t~lLDE~L~~L~~I~~ 702 (981)
|||||+||+|+|||||||+||+|++||++|| ++|.||++|.++++++ +++|+|||||||||+||||||+|++|++||+
T Consensus 629 YvdvE~TG~~~qFYdKFn~R~~I~~Ilk~LW~~~~~yr~~l~~~a~~~-~~~FvrFvNlLiND~tyLLDEsL~~L~~I~~ 707 (968)
T 3m62_A 629 YVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQSQNN-ADFFVRFVARMLNDLTFLLDEGLSNLAEVHN 707 (968)
T ss_dssp HHHGGGCCSCCSSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccCCcchHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999874 7899999999999999999999999999999
Q ss_pred HHHHhcchhhhcC-CCHHHHHHHHHHHHHhhhhhhhhhhchHHHHHHHHHhHhhhcCCCCchHHHHHHHHHHHHHHHhhc
Q 002017 703 IEAEMSNTAEWER-RPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLV 781 (981)
Q Consensus 703 ~q~~~~d~~~w~~-l~~eer~e~~~~l~~~e~~~rs~~~L~~etv~~l~~~T~~i~~~F~~peiv~RlA~MLny~L~~Lv 781 (981)
+|.++++.+.|.. ..+|+|+++++.++++||+||||++||++||+||+++|+++|++|++||||+|||+||||||++||
T Consensus 708 ~Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La~etv~ml~~~T~~i~~~F~~peiv~RlA~MLnynL~~Lv 787 (968)
T 3m62_A 708 IQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESLV 787 (968)
T ss_dssp HHHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCCccchhHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHhchhhccHHHHHHHHHHHHHHHHHhc
Confidence 9999998877764 335678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCcccCCChHHHHHHHHHHHHhhccCCCCchhhHhhhhcCCCCcHHHHHHHHHHHHhh-cC-ChHHHHHH
Q 002017 782 GPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKI-GE-DGRIIQEF 859 (981)
Q Consensus 782 Gpk~~~LkVknpekY~F~Pk~lL~~i~~iYlnL~~~~~~~~F~~ava~D~Rsy~~~lf~~a~~il~~~-~~-~~~~i~~~ 859 (981)
||||++||||||++|+|+||+||.+||+||+||++ +++|++|||+|||||++++|++|++||++. |+ +++.+++|
T Consensus 788 GPk~~~LKVknpekY~F~Pk~lL~~i~~IYlnL~~---~~~F~~aVa~DgRSy~~elF~~a~~il~~~~~l~~~~~i~~~ 864 (968)
T 3m62_A 788 GPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSE---QSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKL 864 (968)
T ss_dssp SHHHHTCCCSCGGGGTCCHHHHHHHHHHHHHHTTT---CHHHHHHHHHCTTTCCHHHHHHHHHHHTTSTTSSCHHHHHHH
T ss_pred CccccccccCCHhhcCCCHHHHHHHHHHHHhhccC---ChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 99999999999999999999999999999999995 347999999999999999999999999765 67 99999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCcccc
Q 002017 860 IELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPN 939 (981)
Q Consensus 860 ~~l~~~v~~~~~~~~~~e~~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn 939 (981)
.+|++++++.+++.+++|++++++|++|+||||.+||+|||++|+||+||||++|++||.++++||+||+||+.++|+||
T Consensus 865 ~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 865 LNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence 99999999999888888999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCCcc
Q 002017 940 TELKAKIEEFIKSQGLKRHGEG 961 (981)
Q Consensus 940 ~~Lk~~I~~~~~~~~~~~~~~~ 961 (981)
.+||++|++|+.+++.++..+.
T Consensus 945 ~~Lk~~I~~w~~~~~~~~~~~~ 966 (968)
T 3m62_A 945 EELRQKILCFKKQKKEEAKHKA 966 (968)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999988776443
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A | Back alignment and structure |
|---|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
| >3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B | Back alignment and structure |
|---|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 981 | ||||
| d1wgma_ | 98 | g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu | 2e-16 | |
| d1t1ha_ | 78 | g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre | 3e-14 | |
| d2c2la2 | 80 | g.44.1.2 (A:225-304) STIP1 homology and U box-cont | 3e-08 | |
| d1jm7a_ | 103 | g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie | 4e-04 | |
| d2baya1 | 56 | g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { | 0.002 |
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.7 bits (180), Expect = 2e-16
Identities = 50/92 (54%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Query: 868 AAASEAM--DAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDP 925
++ S + E D DEFLDPI TLM DPV+LPSSR+TVDR I RHLLSD TDP
Sbjct: 2 SSGSSGLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDP 61
Query: 926 FNRSHLTADMLIPNTELKAKIEEFIKSQGLKR 957
FNRS LT D + PNTELK KI+ ++ + +
Sbjct: 62 FNRSPLTMDQIRPNTELKEKIQRWLAERKQQS 93
|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 | Back information, alignment and structure |
|---|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 981 | |||
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 99.84 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 99.72 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 99.71 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 99.31 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 98.83 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 98.8 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 98.69 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 97.81 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 97.67 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 97.53 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 97.17 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 96.39 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 95.88 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 95.85 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 94.68 |
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=4.7e-22 Score=182.41 Aligned_cols=84 Identities=58% Similarity=0.852 Sum_probs=78.3
Q ss_pred hHhhhcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHcC
Q 002017 875 DAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQG 954 (981)
Q Consensus 875 ~~e~~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn~~Lk~~I~~~~~~~~ 954 (981)
++++.+.++|++|+||||++||+|||++|+|||+|||++|.+||.++.+||+||+||+.++|+||.+||++|++|+++++
T Consensus 11 ~~~~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~ 90 (98)
T d1wgma_ 11 QEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp SCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred hhHhhhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999998899999999999999999999999999999999999999999999987
Q ss_pred CCcC
Q 002017 955 LKRH 958 (981)
Q Consensus 955 ~~~~ 958 (981)
.+..
T Consensus 91 ~~~~ 94 (98)
T d1wgma_ 91 QQSG 94 (98)
T ss_dssp TCSC
T ss_pred Hhcc
Confidence 6543
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|