Citrus Sinensis ID: 002019
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 980 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L6J5 | 1002 | DNA-directed RNA polymera | N/A | no | 0.986 | 0.965 | 0.700 | 0.0 | |
| Q93Y94 | 1002 | DNA-directed RNA polymera | N/A | no | 0.976 | 0.955 | 0.721 | 0.0 | |
| Q8L6J3 | 1021 | DNA-directed RNA polymera | N/A | no | 0.989 | 0.950 | 0.674 | 0.0 | |
| Q8VWF8 | 1020 | DNA-directed RNA polymera | N/A | no | 0.980 | 0.942 | 0.670 | 0.0 | |
| P92969 | 976 | DNA-directed RNA polymera | yes | no | 0.986 | 0.990 | 0.654 | 0.0 | |
| Q9LFV6 | 1011 | DNA-directed RNA polymera | no | no | 0.978 | 0.948 | 0.651 | 0.0 | |
| P69242 | 977 | DNA-directed RNA polymera | N/A | no | 0.841 | 0.844 | 0.671 | 0.0 | |
| P69243 | 977 | DNA-directed RNA polymera | N/A | no | 0.841 | 0.844 | 0.671 | 0.0 | |
| O24600 | 993 | DNA-directed RNA polymera | no | no | 0.865 | 0.853 | 0.634 | 0.0 | |
| Q8L6J1 | 977 | DNA-directed RNA polymera | N/A | no | 0.842 | 0.845 | 0.672 | 0.0 |
| >sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2 | Back alignment and function desciption |
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Score = 1414 bits (3661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/1015 (70%), Positives = 817/1015 (80%), Gaps = 48/1015 (4%)
Query: 1 MWRNLARQSSTRNFKFSPSKV----SQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLS 56
MWR +++ + +R F+ S SQ ++ K L+ ++ P LG + S S
Sbjct: 1 MWRYISKHAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNSIFS 60
Query: 57 ----------------SQKSNLG---QSNFTQSIYPFGVLTSR---------SYASAAEA 88
S+ +LG S F+ F + R SY SAAEA
Sbjct: 61 RISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGSAAEA 120
Query: 89 IASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKI 148
I S SE +E+QELI++ +++ ++ +++ KQPK G GMG KY L+RRQIK+
Sbjct: 121 IVSTSE-EDIDEIQELIEEMDKENEAL--KANLQPKQPKTIG-GMGVGKYNFLRRRQIKV 176
Query: 149 ETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHM 208
ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA +Q +
Sbjct: 177 ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLMTNAG--EVRVVQAACQIGEAIENEARIQSFFKS 266
YAP+F+ LPA+MMAVITMHKL+GLLMT G RVVQAA IGEAIE+EARI F +
Sbjct: 237 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEK 296
Query: 267 TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP 326
TKK NA +LE P ++KE+E+L+K+V L+KKQKL+QVR IVK D KP
Sbjct: 297 TKKSNALSGDLE-------ETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKP 349
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYG 385
WGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRPAFVHTLK T E +KG RRYG
Sbjct: 350 WGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLK--TVETMKGSRRYG 407
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET 445
VI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++GG+ FLPSY+MRTHGA+QQRE
Sbjct: 408 VIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREA 467
Query: 446 IKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPN 505
+K P+ QLEPVFQALDTLG+TKWRVN+++LG++DR+WASGG LA LVD+EDVPLPE P+
Sbjct: 468 VKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPD 527
Query: 506 TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAY 565
T+DE EI+KWKWKVK KK+N E+HSQRCDIELKL+VARKMKDE+GFYYPHNLDFRGRAY
Sbjct: 528 TEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAY 587
Query: 566 PMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTEN 625
PMHPYLNHLGSDLCRG+LEF EG PLG +GL WLKIHLAN+Y GGVDKLSYEGRVAF+EN
Sbjct: 588 PMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSEN 647
Query: 626 HLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCN 685
HL+DIFDSA+RPLEG+RWWLGAEDPFQCLATCIN++EALRSPSPE+ IS++P+H DGSCN
Sbjct: 648 HLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCN 707
Query: 686 GLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARL 745
GLQHYAALGRDKLGAAAVNLV GDKPADVYSGIAARVL+IM+ DA KDPA P ARL
Sbjct: 708 GLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARL 767
Query: 746 LINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTA 805
LINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKER IEDD++LF AACYAAKTTLTA
Sbjct: 768 LINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTA 827
Query: 806 LGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLAL 865
LGEMFEAARSIMSWLG+CAK+IA EN VRWTTPLGLPVVQPY +LGRHLI+TSLQ L L
Sbjct: 828 LGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTL 887
Query: 866 QRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQM 925
QRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTA+ACK +GLSFAGVHDSYWTHACDVDQM
Sbjct: 888 QRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQM 947
Query: 926 NRILREKFVELYEQPILEDLLASFQKQFPKLNFPPLPERGDFDLRDVLESPYFFN 980
N+ILREKFVELY+ PILE+LL SFQ+ FP L FPPLPERGDFDLR+VLESPYFFN
Sbjct: 948 NKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
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DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Nicotiana tabacum (taxid: 4097) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6 |
| >sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2 | Back alignment and function description |
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| >sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RPOT2 PE=1 SV=1 | Back alignment and function description |
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| >sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1 | Back alignment and function description |
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| >sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1 | Back alignment and function description |
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| >sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 980 | ||||||
| 225425009 | 978 | PREDICTED: DNA-directed RNA polymerase 1 | 0.983 | 0.985 | 0.740 | 0.0 | |
| 255547027 | 997 | DNA-directed RNA polymerase 2, chloropla | 1.0 | 0.982 | 0.726 | 0.0 | |
| 224111836 | 852 | predicted protein [Populus trichocarpa] | 0.864 | 0.994 | 0.790 | 0.0 | |
| 224099265 | 877 | predicted protein [Populus trichocarpa] | 0.872 | 0.974 | 0.774 | 0.0 | |
| 15823750 | 1002 | T7 bacteriophage-type single subunit RNA | 0.976 | 0.955 | 0.719 | 0.0 | |
| 225451858 | 1035 | PREDICTED: DNA-directed RNA polymerase 2 | 0.990 | 0.938 | 0.695 | 0.0 | |
| 88933965 | 1002 | RecName: Full=DNA-directed RNA polymeras | 0.986 | 0.965 | 0.700 | 0.0 | |
| 21425663 | 1002 | mitochondrial RNA polymerase [Nicotiana | 0.976 | 0.955 | 0.722 | 0.0 | |
| 21425637 | 1002 | phage-type RNA polymerase [Nicotiana tab | 0.986 | 0.965 | 0.699 | 0.0 | |
| 34925359 | 1002 | RecName: Full=DNA-directed RNA polymeras | 0.976 | 0.955 | 0.721 | 0.0 |
| >gi|225425009|ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1500 bits (3883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 736/994 (74%), Positives = 833/994 (83%), Gaps = 30/994 (3%)
Query: 1 MWRNLARQSSTRNFKFSPS-------KVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTS 53
MWRNLA+ + TR + S + F K +LE+Q ++S P+ G RR
Sbjct: 1 MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRIG 60
Query: 54 FLSSQKSNLGQSNFTQSIYP---FGVLT-SRSYASAAEAIASESELSGSEEVQELIDQFN 109
LS Q+ LG+ F + P FG+ + YASAAEAIASE ++SG +EVQEL+++ N
Sbjct: 61 VLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIASEEDMSGVDEVQELVEEVN 120
Query: 110 EKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
+ L+KQPK G G+ K+ +L+RRQIK+ETEAWE+AAKEY++LL+DMCE
Sbjct: 121 K--------GDKLEKQPKLIG-GVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCE 171
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPY+KSLFLGWFEPLRD IA +Q + YAPYF++LPADMMAVITMHK
Sbjct: 172 QKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHK 231
Query: 230 LVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
L+GLLMT G RVVQAAC IGEAIE+E RIQ F + TKKK+A+ NN +G S P+T
Sbjct: 232 LMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVT-- 289
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
KEQEKL+K+V+ L+KKQKLQQVR IVK DSKPWGQDA VKVG RLI+LL+ETA
Sbjct: 290 -----KEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETA 344
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMII 406
YIQPP DQLGD PPDIRPAFVHTLK+ KE KG RRYGVIECDPLVRKGLEKT RHM+I
Sbjct: 345 YIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVI 404
Query: 407 PYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGS 466
PYMPMLVPPLNW GY++G + FLPSYVMR HGARQQRE IK PR LEP F+AL+TLG+
Sbjct: 405 PYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGN 464
Query: 467 TKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQN 526
TKWR+NKR+LGVIDR+WASGG LA LVD+EDVPLPE+P+T+DE EI+KWKWKV++ KK+N
Sbjct: 465 TKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKEN 524
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
SE+HSQRCDIELKL+VARKMKDE+GF+YPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF
Sbjct: 525 SERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 584
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
EG PLGK+GL WLKIHLAN+YAGGVDKLSYEGRVAFTENHL+DIFDSADRPLEGRRWWL
Sbjct: 585 EGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLS 644
Query: 647 AEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLV 706
AEDPFQCLATCINLSEALRS SPE+TISH+PVH DGSCNGLQHYAALGRDKLGAAAVNLV
Sbjct: 645 AEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLV 704
Query: 707 GGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGV 766
G+KPADVYSGIAARVL+IM+ DA KDPAT P A ARLLI+QVDRKLVKQTVMTSVYGV
Sbjct: 705 AGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGV 764
Query: 767 TYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKV 826
TYIGARDQIK+RLKERCAI D+ ++F A+CYAAKTTLTALGEMFEAARSIMSWLG+CAKV
Sbjct: 765 TYIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKV 824
Query: 827 IASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFV 886
IASEN VRW TPLGLPVVQPY +LGRHLI+TSLQ L+LQRETDKVMVKRQRTAFPPNFV
Sbjct: 825 IASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFV 884
Query: 887 HSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLL 946
HSLDGSHMMMTAVAC++AGL+FAGVHDSYWTHACDVD+MNRILREKFVELY PILE+LL
Sbjct: 885 HSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLL 944
Query: 947 ASFQKQFPKLNFPPLPERGDFDLRDVLESPYFFN 980
FQK FP LNFPPLPERGDFDLR+VLESPYFFN
Sbjct: 945 EGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 978
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547027|ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor, putative [Ricinus communis] gi|223546175|gb|EEF47677.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224111836|ref|XP_002315996.1| predicted protein [Populus trichocarpa] gi|222865036|gb|EEF02167.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224099265|ref|XP_002311418.1| predicted protein [Populus trichocarpa] gi|222851238|gb|EEE88785.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|15823750|dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] | Back alignment and taxonomy information |
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| >gi|225451858|ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|88933965|sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName: Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 1B; Flags: Precursor | Back alignment and taxonomy information |
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| >gi|21425663|emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris] | Back alignment and taxonomy information |
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| >gi|21425637|emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|34925359|sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName: Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 1; Flags: Precursor gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana sylvestris] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 980 | ||||||
| UNIPROTKB|Q93Y94 | 1002 | RPOT1 "DNA-directed RNA polyme | 0.976 | 0.955 | 0.695 | 0.0 | |
| UNIPROTKB|Q8VWF8 | 1020 | RPOT2 "DNA-directed RNA polyme | 0.992 | 0.953 | 0.651 | 0.0 | |
| UNIPROTKB|P69242 | 977 | RPOT3 "DNA-directed RNA polyme | 0.85 | 0.852 | 0.656 | 2.3e-307 | |
| TAIR|locus:2047515 | 993 | SCA3 "SCABRA 3" [Arabidopsis t | 0.865 | 0.853 | 0.625 | 4.8e-300 | |
| DICTYBASE|DDB_G0267416 | 950 | rpmA "DNA-dependent RNA polyme | 0.669 | 0.690 | 0.424 | 1.8e-146 | |
| POMBASE|SPAC26H5.12 | 1154 | rpo41 "mitochondrial RNA polym | 0.798 | 0.678 | 0.361 | 3.5e-139 | |
| ASPGD|ASPL0000068622 | 1391 | AN7609 [Emericella nidulans (t | 0.708 | 0.498 | 0.342 | 5.4e-137 | |
| SGD|S000001858 | 1351 | RPO41 "Mitochondrial RNA polym | 0.619 | 0.449 | 0.407 | 2.4e-132 | |
| UNIPROTKB|F1PCF7 | 1221 | POLRMT "DNA-directed RNA polym | 0.653 | 0.524 | 0.403 | 3.7e-131 | |
| UNIPROTKB|J9P8Y8 | 1414 | POLRMT "DNA-directed RNA polym | 0.617 | 0.427 | 0.414 | 3e-129 |
| UNIPROTKB|Q93Y94 RPOT1 "DNA-directed RNA polymerase 1, mitochondrial" [Nicotiana sylvestris (taxid:4096)] | Back alignment and assigned GO terms |
|---|
Score = 3499 (1236.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 679/976 (69%), Positives = 773/976 (79%)
Query: 8 QSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF 67
+ ST N S+ S + +K+ LE S P LG + S SS K +
Sbjct: 43 EESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGK 102
Query: 68 TQSIYPFGVLTXXXXXXXXXXXXXXXXXXXXXXVQELIDQFNEKGVSILDSSSMLDKQPK 127
S G L +QELI++ N++ ++ +++ KQPK
Sbjct: 103 RGS----GSLGFLRSYGSAAEAIASTSEEDIDEIQELIEEMNKENEAL--KTNLQPKQPK 156
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
G GMG KY +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 157 TIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWF 215
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG--EVRVVQ 245
EPLRDAIA +Q + YAP+F+ LPA+MMAVITMHKL+GLLMT G RVVQ
Sbjct: 216 EPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQ 275
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPXXXXXXXXXXXXRVTSL 305
AA IGEAIE+EARI F + TKK NA L GD E + P +V L
Sbjct: 276 AASHIGEAIEHEARIHRFLEKTKKSNA----LSGDLE---DTPGDIMKERERVRKKVKIL 328
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
+KKQKLQQVR IVK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRP
Sbjct: 329 MKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRP 388
Query: 366 AFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AFVHTLK T E +KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++G
Sbjct: 389 AFVHTLK--TVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKG 446
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA 484
+ FLPSY+MRTHGA+QQRE +K P+ QLEPVFQALDTLG+TKWR+N+++LG++DR+WA
Sbjct: 447 AYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWA 506
Query: 485 SGGCLAGLVDQEDVPLPEKPNTDDETEIXXXXXXXXXXXXQNSEKHSQRCDIELKLSVAR 544
SGG LA LVD+EDVPLPE+P+ +DE +I +N E+HSQRCDIELKL+VAR
Sbjct: 507 SGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVAR 566
Query: 545 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604
KMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK+GL WLKIHLA
Sbjct: 567 KMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLA 626
Query: 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
N+Y GGVDKLSYEGRVAF+ENH++DIFDSA+RPLEG+RWWLGAEDPFQCLATCIN++EAL
Sbjct: 627 NVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEAL 686
Query: 665 RSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLE 724
RSPSPE+ IS++P+H DGSCNGLQHYAALGRD LGAAAVNLV GDKPADVYSGIAARVL+
Sbjct: 687 RSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLD 746
Query: 725 IMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCA 784
IM+ DA KDPA P ARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIK+RLKER
Sbjct: 747 IMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGV 806
Query: 785 IEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPV 844
IEDD++LF AACYAAKTTLTALGEMFEAARSIMSWLG+CAK+IA EN VRWTTPLGLPV
Sbjct: 807 IEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPV 866
Query: 845 VQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRA 904
VQPY +LGRHLI+TSLQ L LQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTA+ACK +
Sbjct: 867 VQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKES 926
Query: 905 GLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQFPKLNFPPLPER 964
GLSFAGVHDSYWTHA DVDQMN+ILREKFVELY+ PILE+LL SFQ+ FP L FPPLPER
Sbjct: 927 GLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPER 986
Query: 965 GDFDLRDVLESPYFFN 980
GDFDLR+VLESPYFFN
Sbjct: 987 GDFDLREVLESPYFFN 1002
|
|
| UNIPROTKB|Q8VWF8 RPOT2 "DNA-directed RNA polymerase 2, chloroplastic/mitochondrial" [Nicotiana sylvestris (taxid:4096)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P69242 RPOT3 "DNA-directed RNA polymerase 3, chloroplastic" [Nicotiana sylvestris (taxid:4096)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2047515 SCA3 "SCABRA 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0267416 rpmA "DNA-dependent RNA polymerase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPAC26H5.12 rpo41 "mitochondrial RNA polymerase Rpo41" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000068622 AN7609 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
| SGD|S000001858 RPO41 "Mitochondrial RNA polymerase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PCF7 POLRMT "DNA-directed RNA polymerase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9P8Y8 POLRMT "DNA-directed RNA polymerase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93Y94 | RPOT1_NICSY | 2, ., 7, ., 7, ., 6 | 0.7213 | 0.9765 | 0.9550 | N/A | no |
| P92969 | RPOT1_ARATH | 2, ., 7, ., 7, ., 6 | 0.6541 | 0.9867 | 0.9907 | yes | no |
| P69243 | RPO3A_TOBAC | 2, ., 7, ., 7, ., 6 | 0.6710 | 0.8418 | 0.8444 | N/A | no |
| P69242 | RPOT3_NICSY | 2, ., 7, ., 7, ., 6 | 0.6710 | 0.8418 | 0.8444 | N/A | no |
| Q8VWF8 | RPOT2_NICSY | 2, ., 7, ., 7, ., 6 | 0.6706 | 0.9806 | 0.9421 | N/A | no |
| Q8L6J5 | RPO1B_TOBAC | 2, ., 7, ., 7, ., 6 | 0.7004 | 0.9867 | 0.9650 | N/A | no |
| Q8L6J1 | RPO3B_TOBAC | 2, ., 7, ., 7, ., 6 | 0.6722 | 0.8428 | 0.8454 | N/A | no |
| Q8L6J3 | RPO2B_TOBAC | 2, ., 7, ., 7, ., 6 | 0.6740 | 0.9897 | 0.9500 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.976 |
| 4th Layer | 2.7.7.6 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 980 | |||
| pfam00940 | 394 | pfam00940, RNA_pol, DNA-dependent RNA polymerase | 0.0 | |
| COG5108 | 1117 | COG5108, RPO41, Mitochondrial DNA-directed RNA pol | 0.0 | |
| PHA00452 | 807 | PHA00452, PHA00452, T3/T7-like RNA polymerase | 0.0 |
| >gnl|CDD|216207 pfam00940, RNA_pol, DNA-dependent RNA polymerase | Back alignment and domain information |
|---|
Score = 592 bits (1529), Expect = 0.0
Identities = 218/400 (54%), Positives = 289/400 (72%), Gaps = 13/400 (3%)
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G PLG++GL+WLKIHLANLY G+DKLS++ RV + + +LD+I DSA+ PL+GR WWL A
Sbjct: 1 GKPLGESGLYWLKIHLANLY--GLDKLSFDERVQWVDENLDNILDSAEDPLDGR-WWLKA 57
Query: 648 EDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVG 707
++P+Q LA C+ L +ALRS PE ISH+P+H DGSCNGLQHYAALGRD+ GA VNL+
Sbjct: 58 DEPWQFLAACLELRKALRSGDPEEYISHLPIHQDGSCNGLQHYAALGRDEEGAKQVNLIP 117
Query: 708 GDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVT 767
DKP DVYSG+A V+E + DA + A +LL ++ RK+VKQTVMT VYGVT
Sbjct: 118 SDKPQDVYSGVAELVIERLEEDAKEAAEGNEIA---KLLKGKITRKVVKQTVMTLVYGVT 174
Query: 768 YIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVI 827
+ GAR+QIK +LK++ ED + AA Y AK ++ E+F AR IM WL ECAK+I
Sbjct: 175 FYGAREQIKDQLKDKGTDEDKVLSYKAANYLAKIIFESIKEVFPGAREIMDWLNECAKLI 234
Query: 828 ASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQR---ETDKVMVKRQRTAFPPN 884
A N V WTTPLGLPVVQPY + + ++TSLQ ++ ++ T ++Q++AFPPN
Sbjct: 235 AKLNIPVVWTTPLGLPVVQPYRKSKKKRVKTSLQGVSRRKVITLTPVSDKRKQKSAFPPN 294
Query: 885 FVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQ-PILE 943
F+HSLD SH+M+TA+AC +AG+ FA VHDS+WTHA DVD++N++LRE+FVELY ILE
Sbjct: 295 FIHSLDASHLMLTALACIKAGIPFASVHDSFWTHANDVDKLNKLLREQFVELYSDLDILE 354
Query: 944 DLLASFQKQFPK---LNFPPLPERGDFDLRDVLESPYFFN 980
L F ++P + FPPLP++GD DL++VLES YFF+
Sbjct: 355 RLAEDFIVRYPDSLPIKFPPLPKKGDLDLKEVLESKYFFS 394
|
This is a family of single chain RNA polymerases. Length = 394 |
| >gnl|CDD|227439 COG5108, RPO41, Mitochondrial DNA-directed RNA polymerase [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|222797 PHA00452, PHA00452, T3/T7-like RNA polymerase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 980 | |||
| KOG1038 | 1088 | consensus Mitochondrial/chloroplast DNA-directed R | 100.0 | |
| PHA00452 | 807 | T3/T7-like RNA polymerase | 100.0 | |
| COG5108 | 1117 | RPO41 Mitochondrial DNA-directed RNA polymerase [T | 100.0 | |
| PF00940 | 405 | RNA_pol: DNA-dependent RNA polymerase; InterPro: I | 100.0 | |
| PF14700 | 318 | RPOL_N: DNA-directed RNA polymerase N-terminal; PD | 100.0 | |
| smart00482 | 206 | POLAc DNA polymerase A domain. | 91.96 | |
| COG5108 | 1117 | RPO41 Mitochondrial DNA-directed RNA polymerase [T | 87.94 | |
| cd08637 | 377 | DNA_pol_A_pol_I_C Polymerase I functions primarily | 85.65 | |
| PRK14975 | 553 | bifunctional 3'-5' exonuclease/DNA polymerase; Pro | 84.06 | |
| cd08638 | 373 | DNA_pol_A_theta DNA polymerase theta is a low-fide | 83.93 |
| >KOG1038 consensus Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-252 Score=2149.18 Aligned_cols=950 Identities=58% Similarity=0.971 Sum_probs=857.5
Q ss_pred Chhhhhhhh------hcccccc-CCC----C----Cccccccccc---ccc-cccccccCCCCCCccccccccccccccc
Q 002019 1 MWRNLARQS------STRNFKF-SPS----K----VSQTTNFLKK---ITS-LETQTLLDSSCPLLGFRRTSFLSSQKSN 61 (980)
Q Consensus 1 ~~~~~~~~~------~~~~~~~-~~~----~----~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (980)
||+|+..++ .++.... +.+ + ++.-.++|+- ... |.... ..++++..|+++..+++-.|
T Consensus 89 ~~~~~l~~s~~~~t~~~~~~~~l~~~s~t~~l~~~~~~i~~~~S~~~~~lt~~~~~~-~~~p~~~~~~~~~~~l~~~n-- 165 (1088)
T KOG1038|consen 89 MWRNLLLKSFQNETMALRRHAALNPSSTTLGLLDPVEAISGIFSSLAKVLTTLRHKL-LVSPEHVRGIRQLLGLNNIN-- 165 (1088)
T ss_pred HhhhhHHHHhhhhhHHHHhhccCCchhhcccccchhhcchhhhhhhhhhhHHHhccc-ccCchhhhhhHHhhccchhh--
Confidence 799999998 5555443 222 1 0111134442 222 22222 35677788888888777666
Q ss_pred cCCCCCccCCCCcCccccccccChhhhhcc---cccCCchHHHHHHHHHHHhhccc-----ccccccccccccccccCCC
Q 002019 62 LGQSNFTQSIYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVS-----ILDSSSMLDKQPKKKGTGM 133 (980)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 133 (980)
+|.+...+.+| ..+||+-+++..-+ +.+++.-+++.+++++|.++..+ ........+...+.+..++
T Consensus 166 ----sF~~~~~~l~G-~~~g~s~a~e~~~~~~~~~~s~~~~~~~~~~~~m~ke~~~~~~~~~~~~~~~~~~~lk~v~k~~ 240 (1088)
T KOG1038|consen 166 ----SFPHSSEVLSG-LIKGSSLAGESENPTDQEGDSSNKQEINELVTKMEKEGNSLNQISSKFLEESRDLPLKAVRKGF 240 (1088)
T ss_pred ----cccchhhhhhc-ccccchHHHHHhCcccccccccchhhHHHHHhHhhhhhhhhhHHHHHHHHHHhcccHHHHHHhc
Confidence 45566555556 67888444555544 34455577899999999998743 1112222233335667788
Q ss_pred ChH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccCCCChh-HHHHHHHHHHHHHHHHHHHHHHhhhc--cCcc
Q 002019 134 GTA-KYYMLKRRQIKIETEAWEQAAKEYQ-DLLADMCEQKLAPNLPY-VKSLFLGWFEPLRDAIAKDQATAQDK--WKHM 208 (980)
Q Consensus 134 ~~~-~~~~l~~RQ~~lE~~~~~~a~~~~r-~~~~~~~~~g~a~~~~~-~~~l~~~w~~~l~~~I~~e~~~~~~~--~~r~ 208 (980)
|.. +|-.+.+||..+|+++|++|+++|+ ++..+||+..+++++|| +++++++||++|+++|++|++.++.. +.|.
T Consensus 241 ~~~~d~~~l~~Rq~~~e~~~~e~a~e~~k~el~~~~c~~~l~~~lp~~lk~lf~~W~~~l~~ai~ee~n~~r~~~~~~r~ 320 (1088)
T KOG1038|consen 241 GDFKDFFNLDRRQVKLETEAWERAAEEWKIELESDMCEGSLAPNLPYNLKSLFLGWFKPLRDAIKEEINLLRALVRKGRL 320 (1088)
T ss_pred cchHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 877 9999999999999999999999999 78899999999999999 99999999999999999999999875 8899
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCC
Q 002019 209 TYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTN 286 (980)
Q Consensus 209 ~y~p~L~~l~~e~lA~Iti~~~l~~~~~~~--~~~~~~~~~~~IG~ave~E~~~~~~~~~~~k~~~~~~~~~~~~~~l~~ 286 (980)
.|+|||++||++++|+|||+++|+++++|+ +++++++++.+||++||+|+|++.+.++..|++.. +
T Consensus 321 ~Y~p~L~lL~a~k~aviti~el~~ll~tg~~~~~~~v~~aa~~~G~aveqe~ri~~~lq~~~k~~~~----~-------- 388 (1088)
T KOG1038|consen 321 NYAPFLKLLDADKMAVITIHELMGLLMTGGETGGVRVVQAAKSLGRAVEQEFRIEQFLQRKTKNKAG----D-------- 388 (1088)
T ss_pred ccchHHHhcChhhHHHHHHHHHHhhhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----h--------
Confidence 999999999999999999999999999987 88999999999999999999999998875443221 0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCCCHHHHHHHHHHHHHHHHHHccccCCCCCCCCCCCcccCc
Q 002019 287 DPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPA 366 (980)
Q Consensus 287 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~vG~~Li~~l~~~~~i~~~~~~~~~~~~~~~pa 366 (980)
.....++....++.+..++++.++.+....+.......+|+..++++||++|+++||++++|+++.++..++.++..||
T Consensus 389 -~~~~~ke~~~~~~~v~~l~~~~k~~~~~~~~~~~~~~~pWp~~v~~kvGs~L~~lL~~~aki~~~~~~~~~~~~~~~pa 467 (1088)
T KOG1038|consen 389 -SYCELKELGKSRKEVRQLVQNLKLSQRLSGPESHLSEKPWPSAVQAKVGSRLIELLMQVAKIQVPADQPDTKLPDERPA 467 (1088)
T ss_pred -HHHHHHHhhcccHHHHHHHHHHHHHHHhcccccccccCCccHHHHHHHHHHHHHHHHHHhcCCCcccCcCcCccccchh
Confidence 1233456777788899999888888888777766778899999999999999999999999999999988889999999
Q ss_pred eEEEeeecccccCCCeEEEEEEeCHHHHHHHHhccccccCCCCceeeCCcCcccCCCccccccCcceeeccchhhHHHH-
Q 002019 367 FVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET- 445 (980)
Q Consensus 367 F~h~~~~~~~~~~~~~~~gvi~~~~~~~~~l~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~l~R~~~~~~q~~~- 445 (980)
|+|.|++ .+..+.+++||+|+|||.+..+|++.+.++.++++||||||+||+++++||||++|+++||++++++|..+
T Consensus 468 f~h~f~~-~n~~~~~~~~g~ie~~pll~r~leks~~~~~~~~vPMLvpPkpWt~~~~Ggyl~~~s~lmRt~g~~~Q~~~l 546 (1088)
T KOG1038|consen 468 FVHTFQV-TNGQKGGRKYGVIECHPLLSRGLEKSALHFVPPLVPMLVPPKPWTGYDSGGYLFLPSYLMRTHGAKEQVDYL 546 (1088)
T ss_pred hhhheee-ecccccceeeeeeecCHHHHHHhhhhhccccccccccccCCCCCCCCCCCceEecchhhhhcCCcHHHHHHH
Confidence 9999994 44444588999999999999999999888999999999999999999999999999999999999999885
Q ss_pred HHcCCCCChhhHHHHHHhhcCcccEechhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHH
Q 002019 446 IKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKP-NTDDETEIKKWKWKVKTAKK 524 (980)
Q Consensus 446 l~~~~~~~l~~v~~aLN~Lq~t~w~IN~~vL~vi~~~w~~g~~~~~l~~~~~~p~P~~p-~~~d~~~~~~wk~~~~~~~~ 524 (980)
+++.+.+++++||+|||.||+||||||++||||+.++|++|+.+.+++++.+.|+|++| ..+|+.+++.|+++.+.+.+
T Consensus 547 lkas~~~~l~~v~daL~~LG~t~WrVN~rvldvV~riw~~Gg~~~~~v~r~~~~lP~~P~~s~dp~~~~~wk~e~k~~~k 626 (1088)
T KOG1038|consen 547 LKASPPGQLDPVFDALDTLGNTKWRVNRRVLDVVIRIWQNGGCFLLIVPREDVPLPPKPTLSEDPAELKAWKWEVKKAQK 626 (1088)
T ss_pred HhcCChhhhHHHHHHHHHhcCCCeeecchHHHHHHHHHhcCCCccCCCCCCCCCCCCCCCCCcChHHHHHhHHHHHHHHH
Confidence 55667889999999999999999999999999999999999999999999999999999 67899999999999999999
Q ss_pred HHhHhhhhhhhHHHHHHHHHhccCCCceeecccCCCCCcccCCCCCCCCCCccchhhhhhcccCCcCcccchHHHHHHHH
Q 002019 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604 (980)
Q Consensus 525 ~~~~~~s~r~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~FaegkpLg~~Gl~WLkIhlA 604 (980)
.++++||+|||++|+|+||++|+|+ .||||||||||||+||+||||||.|||+|||||+|++|+|||++||+|||||+|
T Consensus 627 ~~~e~HS~RCD~~ykLsvAr~~~de-~Fy~PHNmDFRGRaYP~~PHlNHLgsDlcRglLeF~~GkPLG~sGL~WLKIHla 705 (1088)
T KOG1038|consen 627 VNRERHSLRCDAEYKLSVARKMKDE-EFYYPHNMDFRGRAYPLPPHLNHLGSDLCRGLLEFAEGKPLGPSGLRWLKIHLA 705 (1088)
T ss_pred hhhhhhhhhhhHHHHHHHHHHhccC-eeecCcccCcCCccCCCCchhcccchHHHHHHHHHhcCCcCCccchhHHHHHHH
Confidence 9999999999999999999999998 599999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHhhHHHHHHhhcCCcCCchhhhcCCChHHHHHHHHHHHHhhcCCCCCCccccccccccCCc
Q 002019 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSC 684 (980)
Q Consensus 605 N~~g~G~DK~s~deRi~wv~~n~~~I~~sA~dPl~~~~wW~~Ad~P~QfLA~C~El~~a~~~~~p~~y~S~lPV~qDgSC 684 (980)
|+|| |+||+|+++|++|+++|+++|+|||++||+|++||++|||||||||+|||+++|++++||+.|+||+||||||||
T Consensus 706 NL~~-g~~kl~~~~RlAF~E~hl~DI~DSAd~PLtG~rWW~~AedPfQ~LA~C~elaea~RspdPeayiSH~PIHQDGSC 784 (1088)
T KOG1038|consen 706 NLYA-GVDKLSLRDRLAFTEEHLDDIFDSADRPLTGRRWWLKAEDPFQCLAACMELAEALRSPDPEAYISHIPIHQDGSC 784 (1088)
T ss_pred HHhc-ccccccHHHHHHHHHHHHHHHhhcccCCCcccchhhcCCChHHHHHHHHHHHHHHcCCCHHHHHhcCCcccCCCc
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHhhCCccccccccccCCCCCchhhhHHHHHHHHHHHHhccCCCCCCcchHHHHHhhccCccccccccceeeec
Q 002019 685 NGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVY 764 (980)
Q Consensus 685 nGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~v~~~i~~da~~~~~~~~~~~~a~~l~~~i~RKvvKqtVMT~vY 764 (980)
||||||||||||..||++|||+|||+|||||++||..|.+.+++||++|+ .+|++|.+.||||||||||||+||
T Consensus 785 NGLQHYAALGrD~~GA~~VNLvpsdkPqDVYs~VA~~V~~~~k~DAe~g~------e~Ak~L~~~V~RKvVKQTVMT~VY 858 (1088)
T KOG1038|consen 785 NGLQHYAALGRDSEGAAAVNLVPSDKPQDVYSAVAARVEKIMKQDAEKGP------EVAKILKDQVTRKVVKQTVMTSVY 858 (1088)
T ss_pred chHHHHHHhcCccccchhccccCCCCchhHHHHHHHHHHHHHHHhhhcCh------HHHHHHHHHHhHHHhhhheeeeee
Confidence 99999999999999999999999999999999999999999999999996 699999999999999999999999
Q ss_pred ccchhchHHHHHHHHhhccCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcCCCCeE
Q 002019 765 GVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPV 844 (980)
Q Consensus 765 GvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~yla~~i~~ai~e~f~~A~~im~WL~~~A~~i~~~~~pV~WtTP~GlpV 844 (980)
|||++|||+||.++|++++.|+|+.++|.+|+|++++||+||+|||.+|+.||+||++||++|++++.||+||||+||||
T Consensus 859 GVTyvGAR~QI~krL~e~~~f~d~~~v~~as~Yltk~tf~aLrEmF~~araIq~WlgecAklIs~~~~~V~WtTPLGLPV 938 (1088)
T KOG1038|consen 859 GVTYVGARLQIKKRLKEIDDFPDEKEVFDASCYLTKKTFEALREMFTAARAIQDWLGECAKLISSENSPVEWTTPLGLPV 938 (1088)
T ss_pred eeeEecHHHHHHHHhhhccCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEecCCCCcc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCcceeEEeeeEEEEEe-cC-CCcCchHhhhccCCCcchhhhhhHHHHHHHHHHHHcCCcEEEeeccccCCCCCh
Q 002019 845 VQPYHQLGRHLIRTSLQTLALQ-RE-TDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDV 922 (980)
Q Consensus 845 vQ~Y~k~~~~~I~t~lq~~~l~-~~-~d~vd~rKq~~af~PNFIHSLDAsHmmlta~~~~~~gi~fa~VHDSfwTha~dv 922 (980)
||||++.++++|+|.+|++++. .+ +++||.|||++|||||||||||||||||||++|.++||+||+||||||||||||
T Consensus 939 VQPYr~~~~~qirt~lQt~~~~~~d~~~~vn~rkQktaFPPNFIHSLD~SHMmmTal~C~rqGl~FasVHDsyWTHAcDV 1018 (1088)
T KOG1038|consen 939 VQPYRQEKKKQIRTGLQTLFLSPRDLTNKVNARKQKTAFPPNFIHSLDGSHMMMTALACERQGLTFASVHDSYWTHACDV 1018 (1088)
T ss_pred cchhhhhhhhcccccceEEeecchhhccccchhhhhccCCCchhhcccchHHHHHHHHHHhcCCceeeeecchhccccch
Confidence 9999999999999999999998 44 789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCcchHHHHHHHHHH------------hCCCCCCCCCCCCCCCChhhhccCCCCCC
Q 002019 923 DQMNRILREKFVELYEQPILEDLLASFQK------------QFPKLNFPPLPERGDFDLRDVLESPYFFN 980 (980)
Q Consensus 923 d~m~~ilRe~FV~Lys~~il~~l~e~f~~------------~~~~~~~p~~P~~G~lDl~~Vl~S~YfF~ 980 (980)
|+||++|||+||+|||+|||++|+++|++ +|+.+.|||+|++|+|||+.||+|+||||
T Consensus 1019 d~MN~ilREqFV~Lhs~pIle~L~e~f~~ry~~~~~~~~~~s~l~l~fpplP~rGdfDLk~Vl~S~YFFs 1088 (1088)
T KOG1038|consen 1019 DVMNRILREQFVELHSQPILERLLESFEKRYKFKDSDFKNDSQLPLIFPPLPKRGDFDLKKVLDSTYFFS 1088 (1088)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHhccccchhhhhccCCccCCCCCCCCCccHHHHhccccccC
Confidence 99999999999999999999999999999 45677899999999999999999999997
|
|
| >PHA00452 T3/T7-like RNA polymerase | Back alignment and domain information |
|---|
| >COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription] | Back alignment and domain information |
|---|
| >PF00940 RNA_pol: DNA-dependent RNA polymerase; InterPro: IPR002092 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
| >PF14700 RPOL_N: DNA-directed RNA polymerase N-terminal; PDB: 3SPA_A 1CEZ_A 1H38_B 1S77_D 1QLN_A 1S0V_D 3E2E_A 2PI4_A 3E3J_B 1S76_D | Back alignment and domain information |
|---|
| >smart00482 POLAc DNA polymerase A domain | Back alignment and domain information |
|---|
| >COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription] | Back alignment and domain information |
|---|
| >cd08637 DNA_pol_A_pol_I_C Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication | Back alignment and domain information |
|---|
| >PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >cd08638 DNA_pol_A_theta DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis and in somatic hypermutation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 980 | ||||
| 3spa_A | 1134 | Crystal Structure Of Human Mitochondrial Rna Polyme | 1e-135 | ||
| 1aro_P | 883 | T7 Rna Polymerase Complexed With T7 Lysozyme Length | 4e-76 | ||
| 2pi4_A | 878 | T7rnap Complexed With A Phi10 Protein And Initiatin | 4e-76 | ||
| 4rnp_A | 883 | Bacteriophage T7 Rna Polymerase, High Salt Crystal | 6e-76 | ||
| 3e2e_A | 889 | Crystal Structure Of An Intermediate Complex Of T7 | 1e-75 |
| >pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase Length = 1134 | Back alignment and structure |
|
| >pdb|1ARO|P Chain P, T7 Rna Polymerase Complexed With T7 Lysozyme Length = 883 | Back alignment and structure |
| >pdb|2PI4|A Chain A, T7rnap Complexed With A Phi10 Protein And Initiating Gtps. Length = 878 | Back alignment and structure |
| >pdb|4RNP|A Chain A, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form, Low Temperature Data, Alpha-Carbons Only Length = 883 | Back alignment and structure |
| >pdb|3E2E|A Chain A, Crystal Structure Of An Intermediate Complex Of T7 Rnap And 7nt Of Rna Length = 889 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 611 bits (1574), Expect = 0.0
Identities = 290/896 (32%), Positives = 439/896 (48%), Gaps = 66/896 (7%)
Query: 114 SILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLA 173
+L D + + L +Q+ +E A + E K A
Sbjct: 276 KLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHME-LASRVCVVSVEKPTLPSKEVKHA 334
Query: 174 PNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWK--HMTYAPYFNNLPADMMAVITMHKLV 231
+K+L W + L A+ + + + + + P+ L + + + L
Sbjct: 335 RK--TLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQ 392
Query: 232 GLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPE 289
L + +A + R+ ++ +
Sbjct: 393 ALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN-----------------HYR 435
Query: 290 KLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYI 349
K + + + +Q + + + +PW +++G L ++L++ +
Sbjct: 436 KYLCLLASDAEVPEPCLPRQYWEAL--GAPEALREQPWPLPVQMELGKLLAEMLVQATQM 493
Query: 350 QPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMII--- 406
+D+ + P H ++ G+++ P + LEK +
Sbjct: 494 PCSLDK-PHRSSRLVPVLYHVYSFR-----NVQQIGILKPHPAYVQLLEKAAEPTLTFEA 547
Query: 407 PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGARQQRETIKMTPRSQLEPVFQALDTLG 465
+PML PPL W + G P+ +MRT GA Q +E ++ P + L AL LG
Sbjct: 548 VDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLG 607
Query: 466 STKWRVNKRILGVIDRMWASGGCLAGLV-----DQEDVPLPEKPNTDDETEIKKWKWKVK 520
+ WRVN R+L ++ +++ + GC V + P P++ + + ++
Sbjct: 608 NCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRRELA 667
Query: 521 TAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCR 580
+K E HS R + +LS+A+ ++D F+ PHN+DFRGR YP P+ NHLGSD+ R
Sbjct: 668 HCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDVAR 726
Query: 581 GVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
+LEF +G PLG GL WLKIHL NL G + R+AF E +DDI DSAD+PL G
Sbjct: 727 ALLEFAQGRPLGPHGLDWLKIHLVNLT-GLKKREPLRKRLAFAEEVMDDILDSADQPLTG 785
Query: 641 RRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGA 700
R+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH+PVH DGSCNGLQHYAALGRD +GA
Sbjct: 786 RKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGA 845
Query: 701 AAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVM 760
A+VNL D P DVYSG+AA+V R DA + A++L + RK+VKQTVM
Sbjct: 846 ASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGM------RVAQVLEGFITRKVVKQTVM 899
Query: 761 TSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWL 820
T VYGVT G R QI+KRL+E + ++ A+ Y + +L EMF R+I WL
Sbjct: 900 TVVYGVTRYGGRLQIEKRLRELSDFPQE-FVWEASHYLVRQVFKSLQEMFSGTRAIQHWL 958
Query: 821 GECAKVIASENQAVRWTTPLGLPVVQPYHQLGR-HLIRTSLQTLALQRETD---KVMVKR 876
E A++I+ V W TPLG+PV+QPY + I +Q++ D K ++
Sbjct: 959 TESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRK 1018
Query: 877 QRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVEL 936
Q+ FPPNF+HSLD SHMM+TA+ C R GL+F VHD YWTHA DV MN++ RE+FV L
Sbjct: 1019 QKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRL 1078
Query: 937 YEQPILEDLLASFQKQFP------------KLNFPPLPERGDFDLRDVLESPYFFN 980
+ +PIL+DL K+F K +P+ G FDL V S YFF+
Sbjct: 1079 HSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGAFDLEQVKRSTYFFS 1134
|
| >1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A Length = 883 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A Length = 1118 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 980 | |||
| 1msw_D | 883 | DNA-directed RNA polymerase, bacteriophage T7 RNA; | 100.0 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 100.0 | |
| 3q23_A | 1118 | Virion RNA polymerase; protein-DNA complex; HET: D | 97.63 |
| >1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-206 Score=1857.77 Aligned_cols=792 Identities=29% Similarity=0.495 Sum_probs=689.1
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh-hccCcccccccc
Q 002019 137 KYY-MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ-DKWKHMTYAPYF 214 (980)
Q Consensus 137 ~~~-~l~~RQ~~lE~~~~~~a~~~~r~~~~~~~~~g~a~~~~~~~~l~~~w~~~l~~~I~~e~~~~~-~~~~r~~y~p~L 214 (980)
.|+ .|++||++||++++++|++||++.+++++++|+++++|++++++.+|+++|+++|+++++..+ +.+.++.|+|||
T Consensus 27 ~~~~~l~~rQ~~lE~e~~~~a~~r~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~g~~~~~~~~L 106 (883)
T 1msw_D 27 HYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFL 106 (883)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTTTTT
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCChhhHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHH
Confidence 344 568999999999999999999999999999999999999999999999999999999988766 356789999999
Q ss_pred ccCCchhHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCChHHHHHH
Q 002019 215 NNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294 (980)
Q Consensus 215 ~~l~~e~lA~Iti~~~l~~~~~~~~~~~~~~~~~~IG~ave~E~~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (980)
++|+||++|+|||+++|+++++ ++++++++++.+||++||+|++++++.++.++++.. +.
T Consensus 107 ~~l~~e~lA~iti~~~l~~~~~-~~~~~~~~~~~~iG~ave~E~~~~~~~~~~~~~~~~-------------------~~ 166 (883)
T 1msw_D 107 QEIKPEAVAYITIKTTLACLTS-ADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKK-------------------NV 166 (883)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHH-CSCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHH-------------------HT
T ss_pred HhCCHHHHHHHHHHHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------------------HH
Confidence 9999999999999999999987 467899999999999999999999988776543321 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhhC----CCCCCCCCHHHHHHHHHHHHHHHHHH-ccccCCCCCCCCCCCcccCceE
Q 002019 295 QEKLKKRVTSLIKKQKLQQVRG-IVKG----HVDSKPWGQDALVKVGCRLIQLLMET-AYIQPPVDQLGDSPPDIRPAFV 368 (980)
Q Consensus 295 ~~~~r~~~~~~~~~~~~~~~~~-~~~~----~~~~~~W~~~~~~~vG~~Li~~l~~~-~~i~~~~~~~~~~~~~~~paF~ 368 (980)
.+.++++.+...++...+.+.+ .... ..++.+|+..++++||++|+++|+++ +.++++..
T Consensus 167 ~~~l~~~~~~~~k~~~~~~~~~~~~~~g~~~~~~~~~W~~~~~~~vG~~Li~~l~~~~~~~~~~~~-------------- 232 (883)
T 1msw_D 167 EEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQ-------------- 232 (883)
T ss_dssp SHHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC--------------
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceecc--------------
Confidence 2233333333333333333333 1121 36789999999999999999999995 56643221
Q ss_pred EEeeecccccC-CCeEEEEEEeCHHHHHHHHhcc---ccccCCCCceeeCCcCcccCCCcccccc---Ccceeeccchhh
Q 002019 369 HTLKSFTKEAL-KGRRYGVIECDPLVRKGLEKTG---RHMIIPYMPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQ 441 (980)
Q Consensus 369 h~~~~~~~~~~-~~~~~gvi~~~~~~~~~l~~~~---~~~~~~~lPMlvpP~pW~~~~~GGYl~~---~~~l~R~~~~~~ 441 (980)
..| +++++|+|++||.+.+.+.+.. ..+.+.+|||||||+||+++.+||||+. +..++|++.
T Consensus 233 --------~~~~~~k~~~~i~~~~~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~ir~~~--- 301 (883)
T 1msw_D 233 --------NAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHS--- 301 (883)
T ss_dssp ----------------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSS---
T ss_pred --------ccCCCCceeeEEEeCHHHHHHHhhcccchhhcCCCCCceeeCCccCCCCCCCCccCCCcccchhhcccC---
Confidence 112 2578899999999999997542 3345569999999999999999999974 345677653
Q ss_pred HHHHHHcCCCCChhhHHHHHHhhcCcccEechhHHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHH
Q 002019 442 QRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA-SGGCLAGLVDQEDVPLPEKPNTDD--ETEIKKWKWK 518 (980)
Q Consensus 442 q~~~l~~~~~~~l~~v~~aLN~Lq~t~w~IN~~vL~vi~~~w~-~g~~~~~l~~~~~~p~P~~p~~~d--~~~~~~wk~~ 518 (980)
+.++++..+++++.||++||+||+|||+||++||+||+++|+ +|+++++||+..+.|+|++|++.| ++++++|++.
T Consensus 302 -~~~~~~~~~~~l~~v~~aLN~L~~t~w~IN~~vL~vi~~~~~~~g~~~~~ip~~~~~~~P~~p~~~d~~~~~~~~~k~~ 380 (883)
T 1msw_D 302 -KKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKRA 380 (883)
T ss_dssp -TTHHHHTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTHH
T ss_pred -HHHHHhccccchHHHHHHHHHhccCCeEecHHHHHHHHHHHhhcCCcccCCCCcCcCCCCCCCCccccCHHHHHHHHHH
Confidence 244555677899999999999999999999999999999999 999999999988899999987543 6788999999
Q ss_pred HHHHHHHHhHhhhhhhhHHHHHHHHHhccCCCceeecccCCCCCcccCCCCCCCCCCccchhhhhhcccCCcCcccchHH
Q 002019 519 VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHW 598 (980)
Q Consensus 519 ~~~~~~~~~~~~s~r~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~FaegkpLg~~Gl~W 598 (980)
++++++.++++||+||+++++|++|++|+|++.||||||+|||||+||+| ||||||+|+|||||+||+|+|||++||+|
T Consensus 381 ~~~~~~~~~~~~S~r~~~~~~L~iA~~f~~~~~fYfPhnlDFRGR~Yp~p-~Ln~~GsDl~RsLL~FaegkpLG~~Gl~W 459 (883)
T 1msw_D 381 AAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYW 459 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEESS-SSCTTSCHHHHHHEEESSCEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecccCCCCcCCCCC-CCCCCcchHHHHHHHhccCCccChhHHHH
Confidence 99999999999999999999999999999988999999999999999995 99999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHhhHHHHHHhhcCCcCCchhhhcCCChHHHHHHHHHHHHhhcCCCCCCccccccc
Q 002019 599 LKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678 (980)
Q Consensus 599 LkIhlAN~~g~G~DK~s~deRi~wv~~n~~~I~~sA~dPl~~~~wW~~Ad~P~QfLA~C~El~~a~~~~~p~~y~S~lPV 678 (980)
||||+||+| |+||+||+||++||++|+++|++||+|||+ .+||++||+||||||+|+||++|+++|+ +|+|||||
T Consensus 460 LkIhlAN~~--G~dK~s~~eRi~wv~~n~~~I~dsA~~Pl~-~~wW~~Ad~PwQfLA~C~El~~a~~~~~--~y~S~lPV 534 (883)
T 1msw_D 460 LKIHGANCA--GVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAFCFEYAGVQHHGL--SYNCSLPL 534 (883)
T ss_dssp HHHHHHHHT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHH-HCGGGGSSSHHHHHHHHHHHHHHHHHCT--TCEECCCE
T ss_pred HHHHHHHhc--CCCcCCHHHHHHHHHHHHHHHHHHhcCccc-chHHHcCCcHHHHHHHHHHHHHHHhCCC--cccccccc
Confidence 999999999 899999999999999999999999999998 5899999999999999999999999876 89999999
Q ss_pred cccCCcchhhHHHHhhCCccccccccccCCCCCchhhhHHHHHHHHHHHHhccCCCCC-------Cc------------c
Q 002019 679 HMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPAT-------YP------------Y 739 (980)
Q Consensus 679 ~qDgSCnGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~v~~~i~~da~~~~~~-------~~------------~ 739 (980)
||||||||||||||||||..||++|||+|+|+|||||+.||+.|.+.+++|+.++.+. .+ .
T Consensus 535 hqDgSCnGLQHyAALgrD~~ga~~VNL~psd~PqDvYs~Va~~v~~~~~~da~~g~~~~~~~~~d~~~g~i~e~~~~~~~ 614 (883)
T 1msw_D 535 AFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTK 614 (883)
T ss_dssp EEECSCHHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCHH
T ss_pred ccCCCCcHHHHHHHHhcChhhhhHhCCCCCCCCcchHHHHHHHHHHHHHHHHhcccccccccccccccccchhhcccchh
Confidence 9999999999999999999999999999999999999999999999999998775321 00 1
Q ss_pred hHHHHHhhccCccccccccceeeecccchhchHHHHHHHHhhccCCCCcchh----hhhhhHHHHHHHHHHHHHHHHHHH
Q 002019 740 ASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKL----FGAACYAAKTTLTALGEMFEAARS 815 (980)
Q Consensus 740 ~~~a~~l~~~i~RKvvKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~----~~~a~yla~~i~~ai~e~f~~A~~ 815 (980)
...+++|.++|+||+|||||||+|||||++|+++||+++|+++++..++... ..+|+|+|++||+||+++|++|+.
T Consensus 615 ~l~~~~l~~~i~RKvvKqtVMT~vYGvT~~Ga~~qI~~~l~~~~~~~~~~~~~~~~~~~a~yla~~i~~ai~~~f~~a~~ 694 (883)
T 1msw_D 615 ALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVE 694 (883)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhcCCCHHHhccceeeeeeCCcchhhHHHHHHHHhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1246788999999999999999999999999999999999875422111122 378999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC------------CCeEEEEcCCCCeEEEeeccCcceeEEeeeEEEE---EecCC---CcCchHhh
Q 002019 816 IMSWLGECAKVIASE------------NQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLA---LQRET---DKVMVKRQ 877 (980)
Q Consensus 816 im~WL~~~A~~i~~~------------~~pV~WtTP~GlpVvQ~Y~k~~~~~I~t~lq~~~---l~~~~---d~vd~rKq 877 (980)
||+||++||++|++. +.||.|+||+||||+|||++.++++|+|.+|.++ +..++ +++|++||
T Consensus 695 im~wL~~~a~~i~~~v~~~~~~~~~~~~~pv~W~TPlGlpV~Q~Y~~~~~~~V~t~l~~~~~i~l~~~~~~~~~~d~~Kq 774 (883)
T 1msw_D 695 AMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQ 774 (883)
T ss_dssp HHHHHHHHHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEECSSSCEECCCCSCSSCCSCCBCHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccccCCCeEEEECCCCCEEEEEecCCCceEEEEeecceeeEeeecccccccccchHHH
Confidence 999999999999998 9999999999999999999999999999998653 23333 35999999
Q ss_pred hccCCCcchhhhhhHHHHHHHHHHHHc-CC-cEEEeeccccCCCCChhHHHHHHHHHHHHhcCc-chHHHHHHHHHHhCC
Q 002019 878 RTAFPPNFVHSLDGSHMMMTAVACKRA-GL-SFAGVHDSYWTHACDVDQMNRILREKFVELYEQ-PILEDLLASFQKQFP 954 (980)
Q Consensus 878 ~~af~PNFIHSLDAsHmmlta~~~~~~-gi-~fa~VHDSfwTha~dvd~m~~ilRe~FV~Lys~-~il~~l~e~f~~~~~ 954 (980)
++|||||||||||||||||||++|.+. |+ +|++|||||||||||||.|+++|||+||+||++ |+|++|.++|..+|+
T Consensus 775 ~~af~PNFIHSLDAsHmmlta~~~~~~~gl~~fa~VHDsfwTha~dvd~m~~~lRe~FV~lys~~~~L~~l~~~~~~~~~ 854 (883)
T 1msw_D 775 ESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLH 854 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEECSSEEEECGGGHHHHHHHHHHHHHHHHHHCCHHHHHHHHHSSTTT
T ss_pred hcCCCchhHhhHHHHHHHHHHHHHHHhcCCCceEEEeccccCCHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999988 99 799999999999999999999999999999999 999999999999998
Q ss_pred C---CCCCCCCCCCCCChhhhccCCCCCC
Q 002019 955 K---LNFPPLPERGDFDLRDVLESPYFFN 980 (980)
Q Consensus 955 ~---~~~p~~P~~G~lDl~~Vl~S~YfF~ 980 (980)
+ .+||++|++|+|||++|++|+|||+
T Consensus 855 ~~~~~~~p~~P~~G~ldl~~Vl~S~YfFs 883 (883)
T 1msw_D 855 ESQLDKMPALPAKGNLNLRDILESDFAFA 883 (883)
T ss_dssp CTTCCCCCCCCCCCSCCGGGGGTCSSCCC
T ss_pred hhhhhcCCCCCCCCCCCHHHHhcCCCCCC
Confidence 5 5899999999999999999999997
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 980 | ||||
| d1mswd_ | 882 | e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [ | 0.0 |
| >d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760]} Length = 882 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: T7 RNA polymerase domain: T7 RNA polymerase species: Bacteriophage T7 [TaxId: 10760]
Score = 733 bits (1893), Expect = 0.0
Identities = 226/895 (25%), Positives = 375/895 (41%), Gaps = 100/895 (11%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L R Q+ +E E++E ++ + + + K L + I
Sbjct: 31 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 90
Query: 201 AQDKW-KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEAR 259
+ K K T + + + +A IT+ + L + V A IG AIE+EAR
Sbjct: 91 VKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASAIGRAIEDEAR 149
Query: 260 IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVK 319
K +K ++EQ L KRV + KK +Q V +
Sbjct: 150 FGRIRDLEAKHF-----------------KKNVEEQ--LNKRVGHVYKKAFMQVVEADML 190
Query: 320 -----GHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSF 374
G W ++ + VG R I++L+E+ + Q +
Sbjct: 191 SKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIELAPE-- 248
Query: 375 TKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVM 434
EA+ R + P+ + P +VPP W G GG++ +
Sbjct: 249 YAEAIATRAGALAGISPM---------------FQPCVVPPKPWTGITGGGYWANGRRPL 293
Query: 435 RTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAG--- 491
++ + + V++A++ +T W++NK++L V + + C
Sbjct: 294 ALVR-THSKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIP 352
Query: 492 LVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEG 551
+++E++P+ + + + WK +++ + S+R +E L A K + +
Sbjct: 353 AIEREELPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKA 412
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
++P+N+D+RGR Y N G+D+ +G+L +G P+GK G +WLKIH AN GV
Sbjct: 413 IWFPYNMDWRGRVYA-VSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCA--GV 469
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
DK+ + R+ F E + ++I A PLE WW + PF LA C +
Sbjct: 470 DKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAFCFEYAGVQHHGLS-- 526
Query: 672 TISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADAD 731
+P+ DGSC+G+QH++A+ RD++G AVNL+ + D+Y +A +V EI++ADA
Sbjct: 527 YNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAI 586
Query: 732 KD-------------------PATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGAR 772
A + L V R + K++VMT YG G R
Sbjct: 587 NGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFR 646
Query: 773 DQIKKRLKERCAIEDDSKLFG----AACYAAKTTLTALGEMFEAARSIMSWLGECAKVIA 828
Q+ + + +F AA Y AK ++ AA M+WL AK++A
Sbjct: 647 QQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLA 706
Query: 829 SE------------NQAVRWTTPLGLPVVQPYHQLGRHLIRTSL------QTLALQRETD 870
+E AV W TP G PV Q Y + + + Q +
Sbjct: 707 AEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDS 766
Query: 871 KVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC-KRAGL-SFAGVHDSYWTHACDVDQMNRI 928
++ +Q + PNFVHS DGSH+ T V ++ G+ SFA +HDS+ T D + +
Sbjct: 767 EIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKA 826
Query: 929 LREKFVELY-EQPILEDLLASFQKQFPKLN---FPPLPERGDFDLRDVLESPYFF 979
+RE V+ Y +L D F Q + P LP +G+ +LRD+LES + F
Sbjct: 827 VRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFAF 881
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 980 | |||
| d1mswd_ | 882 | T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760] | 100.0 | |
| d1qtma2 | 409 | DNA polymerase I (Klenow fragment) {Thermus aquati | 87.97 | |
| d1kfsa2 | 410 | DNA polymerase I (Klenow fragment) {Escherichia co | 85.38 | |
| d2hhva2 | 408 | DNA polymerase I (Klenow fragment) {Bacillus stear | 80.52 |
| >d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: T7 RNA polymerase domain: T7 RNA polymerase species: Bacteriophage T7 [TaxId: 10760]
Probab=100.00 E-value=1e-186 Score=1708.85 Aligned_cols=791 Identities=29% Similarity=0.487 Sum_probs=671.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhh-ccCccccccccccCC
Q 002019 140 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQD-KWKHMTYAPYFNNLP 218 (980)
Q Consensus 140 ~l~~RQ~~lE~~~~~~a~~~~r~~~~~~~~~g~a~~~~~~~~l~~~w~~~l~~~I~~e~~~~~~-~~~r~~y~p~L~~l~ 218 (980)
.|++||++||+++++.|++||++.+++++++|.+++++++++++.+|+++|+++|++++++.+. .|.++.|+|||..|+
T Consensus 30 ~L~~rQ~~LE~ea~~~g~~R~r~~~e~~~~rg~~s~~~~g~~li~~~l~~l~~~I~~~~~~~~~~~G~~~~~~~yL~~l~ 109 (882)
T d1mswd_ 30 RLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIK 109 (882)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTTTTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHhcCC
Confidence 4888999999999999999999999999999999999999999999999999999998887654 466788999999999
Q ss_pred chhHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCChHHHHHHHHHH
Q 002019 219 ADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKL 298 (980)
Q Consensus 219 ~e~lA~Iti~~~l~~~~~~~~~~~~~~~~~~IG~ave~E~~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 298 (980)
||++|+|||+++|++++++ ++.++++++.+||+|||+|++++++.+..++.+.+.. ...+
T Consensus 110 pe~lA~Itik~~ld~l~~~-~~~~~t~va~~IG~AVE~E~r~~~~~~~~~~~~~k~~-------------------~~~~ 169 (882)
T d1mswd_ 110 PEAVAYITIKTTLACLTSA-DNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNV-------------------EEQL 169 (882)
T ss_dssp HHHHHHHHHHHHHHHHHHC-SCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHT-------------------SHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhh-------------------HHHH
Confidence 9999999999999999875 4578999999999999999999998877654432210 1122
Q ss_pred HHHHHHHHHHHHHHHHH-----hhhhCCCCCCCCCHHHHHHHHHHHHHHHHHHccccCCCCCCCCCCCcccCceEEEeee
Q 002019 299 KKRVTSLIKKQKLQQVR-----GIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKS 373 (980)
Q Consensus 299 r~~~~~~~~~~~~~~~~-----~~~~~~~~~~~W~~~~~~~vG~~Li~~l~~~~~i~~~~~~~~~~~~~~~paF~h~~~~ 373 (980)
+++.+...+++..+.++ +.......|.+|+..+++|||++|+++|++++.+.. .....
T Consensus 170 ~k~~~~~~kk~~~~~~~~~~~~~~~~~~~~w~~W~~~~r~kVG~~Lle~l~e~tg~~~-----------------~~~~~ 232 (882)
T d1mswd_ 170 NKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVS-----------------LHRQN 232 (882)
T ss_dssp HHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEE-----------------EECC-
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhccccccCccCHHHHHHHHHHHHHHHHHHhCCce-----------------eeccc
Confidence 22222222332222221 112223578999999999999999999999987621 11110
Q ss_pred cccccCCCeEEEEEEeCHHHHHHHHhccc---cccCCCCceeeCCcCcccCCCccccccCcc---eeeccchhhHHHHHH
Q 002019 374 FTKEALKGRRYGVIECDPLVRKGLEKTGR---HMIIPYMPMLVPPLNWRGYNRGGHFFLPSY---VMRTHGARQQRETIK 447 (980)
Q Consensus 374 ~~~~~~~~~~~gvi~~~~~~~~~l~~~~~---~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~---l~R~~~~~~q~~~l~ 447 (980)
...++++.++|.++|++.+.++.... .+.+.+|||||||+||++..+||||+.... ++|++.. .++.
T Consensus 233 ---~~~~~k~~~~v~~t~~~~~~l~~~~~~~~~~~P~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~~~~~~~----~~~~ 305 (882)
T d1mswd_ 233 ---AGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSK----KALM 305 (882)
T ss_dssp ----------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSST----THHH
T ss_pred ---cccccCcCcceeecHHHHHHHHhhHhHHHhcCcccccccCCCccCCCCCcCCeeecCCCceeccccccH----hhhh
Confidence 01136678889999999988865432 233349999999999999999999986543 5555432 2334
Q ss_pred cCCCCChhhHHHHHHhhcCcccEechhHHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHH
Q 002019 448 MTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA-SGGCLAGLVDQEDVPLPEKPNT--DDETEIKKWKWKVKTAKK 524 (980)
Q Consensus 448 ~~~~~~l~~v~~aLN~Lq~t~w~IN~~vL~vi~~~w~-~g~~~~~l~~~~~~p~P~~p~~--~d~~~~~~wk~~~~~~~~ 524 (980)
+....+++.+|++||+||+|||+||++||+|++.+|+ .|+.++++|+....+.|++|.+ .+++++++|++..+.+++
T Consensus 306 ~~~~~~l~~v~~aLN~LQst~wrIN~~vLdv~~~~~~~~~~~~~~iP~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (882)
T d1mswd_ 306 RYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVYR 385 (882)
T ss_dssp HTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTHHHHHHHH
T ss_pred hccccchHHHHHHHHHHhcCCeEeCHHHHHHHHHHHhcCCCcccccCcccccccCCcccccccCHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999999998 5567888988776666666543 467788999999999999
Q ss_pred HHhHhhhhhhhHHHHHHHHHhccCCCceeecccCCCCCcccCCCCCCCCCCccchhhhhhcccCCcCcccchHHHHHHHH
Q 002019 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604 (980)
Q Consensus 525 ~~~~~~s~r~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~FaegkpLg~~Gl~WLkIhlA 604 (980)
.+.+.+|+||+++++|++|++|+|+++||||||+|||||+||+ |+|||||+|+|||||+||+|+|||++|++|||||+|
T Consensus 386 ~~~~~~s~r~~~~~~l~~A~~~~~~~~fy~P~~~DfRGR~Y~~-~~ln~qg~D~~rsLl~Fa~~~~l~~~g~~wL~i~~A 464 (882)
T d1mswd_ 386 KDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGA 464 (882)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEES-SSSCTTSCHHHHHHEEESSCEECHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCCCCceeeeeeeecccccccC-CCCCCCccchhhhhhhccCCCcccchhHHHHHHHHH
Confidence 9999999999999999999999998889999999999999997 589999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHhhHHHHHHhhcCCcCCchhhhcCCChHHHHHHHHHHHHhhcCCCCCCccccccccccCCc
Q 002019 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSC 684 (980)
Q Consensus 605 N~~g~G~DK~s~deRi~wv~~n~~~I~~sA~dPl~~~~wW~~Ad~P~QfLA~C~El~~a~~~~~p~~y~S~lPV~qDgSC 684 (980)
|+| |+||+||+||++||++|++.|+++|+||+++ .||.+||+||||||+|+||+++++++ +.|+|+|||||||||
T Consensus 465 n~~--g~dK~s~~~r~~w~~~~~~~i~~~~~dp~~~-~~w~~a~~p~qfla~c~e~~~~~~~~--~~~~s~lpv~~D~sc 539 (882)
T d1mswd_ 465 NCA--GVDKVPFPERIKFIEENHENIMACAKSPLEN-TWWAEQDSPFCFLAFCFEYAGVQHHG--LSYNCSLPLAFDGSC 539 (882)
T ss_dssp HHT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHHH-CGGGGSSSHHHHHHHHHHHHHHHHHC--TTCEECCCEEEECSC
T ss_pred hcc--CcchhhHHHHHHHHHHhHHHHHhhhcCcchh-hhhhhCchhHHHHHHHHHHHHHHhcC--CcccccceeeeccCc
Confidence 999 8999999999999999999999999999975 79999999999999999999998854 689999999999999
Q ss_pred chhhHHHHhhCCccccccccccCCCCCchhhhHHHHHHHHHHHHhccCCCCCC-------------------cchHHHHH
Q 002019 685 NGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATY-------------------PYASCARL 745 (980)
Q Consensus 685 nGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~v~~~i~~da~~~~~~~-------------------~~~~~a~~ 745 (980)
|||||||||+||..||++|||+|+|+|+|||+.||+.|.+.+.+|+..+.+.. .....++|
T Consensus 540 nG~Qh~aal~~d~~~a~~vNL~p~~~p~DvY~~va~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (882)
T d1mswd_ 540 SGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQW 619 (882)
T ss_dssp HHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCHHHHHHHH
T ss_pred cHHHHHHHHhcCHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHHhhhccccccccccccccccchhhhcccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999987654321 12235578
Q ss_pred hhccCccccccccceeeecccchhchHHHHHHHHhhccCCC----CcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002019 746 LINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIE----DDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLG 821 (980)
Q Consensus 746 l~~~i~RKvvKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~----d~~~~~~~a~yla~~i~~ai~e~f~~A~~im~WL~ 821 (980)
+..+|+||+|||+|||+|||||++|+++||.++|.+.+... .....+.++.|||++||++|+++|++|+.+|+||+
T Consensus 620 l~~~i~Rk~vK~~vMT~~YG~t~~g~~~qi~~~l~~~~~~~~~~~~~~~~~~~~~yla~~i~~~i~~~~~~a~~~m~wl~ 699 (882)
T d1mswd_ 620 LAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLK 699 (882)
T ss_dssp HTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhcccchhhhccceeeeecccchhhHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 88999999999999999999999999999999986643211 11245678999999999999999999999999999
Q ss_pred HHHHHHHc------------CCCeEEEEcCCCCeEEEeeccCcceeEEeeeEE-EEE-----ecCCCcCchHhhhccCCC
Q 002019 822 ECAKVIAS------------ENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQT-LAL-----QRETDKVMVKRQRTAFPP 883 (980)
Q Consensus 822 ~~A~~i~~------------~~~pV~WtTP~GlpVvQ~Y~k~~~~~I~t~lq~-~~l-----~~~~d~vd~rKq~~af~P 883 (980)
+||++|++ .+.||.||||+||||+|+|++..+++|+|.++. ..+ ...++++|++||++||||
T Consensus 700 ~~a~~i~~~~~~~~~~~~~~~~~pv~W~TP~G~pV~Q~Y~k~~~~~v~t~l~~~~~~~~~~~~~~~~~~d~~Kq~~a~~P 779 (882)
T d1mswd_ 700 SAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAP 779 (882)
T ss_dssp HHHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEECSSSCEECCCCSCSSCCSCCBCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhHHhcCCCeEEEECCCCCEEEEEecCCCcEEEEEEeccceEEEeeeccCCCCCCChhHhccccCc
Confidence 99999985 477999999999999999999999999998643 222 234557999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHH-cCC-cEEEeeccccCCCCChhHHHHHHHHHHHHhcC-cchHHHHHHHHHHhCCCC---C
Q 002019 884 NFVHSLDGSHMMMTAVACKR-AGL-SFAGVHDSYWTHACDVDQMNRILREKFVELYE-QPILEDLLASFQKQFPKL---N 957 (980)
Q Consensus 884 NFIHSLDAsHmmlta~~~~~-~gi-~fa~VHDSfwTha~dvd~m~~ilRe~FV~Lys-~~il~~l~e~f~~~~~~~---~ 957 (980)
|||||||||||||||+.|.+ .|+ +|++|||||||||||||.|+++||++||+||+ .|+|++|.++|..++++. +
T Consensus 780 NfIHSlDAshm~~t~~~~~~~~g~~~fa~VHDsf~tha~dv~~m~~~lRe~Fv~ly~~~~~l~~~~~~~~~~~~~~~~~~ 859 (882)
T d1mswd_ 780 NFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDK 859 (882)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEECSSEEEECGGGHHHHHHHHHHHHHHHHHHCCHHHHHHHHHSSTTTCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeeCCCCCcccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHcchhhccc
Confidence 99999999999999999975 587 99999999999999999999999999999995 599999999999999874 6
Q ss_pred CCCCCCCCCCChhhhccCCCCCC
Q 002019 958 FPPLPERGDFDLRDVLESPYFFN 980 (980)
Q Consensus 958 ~p~~P~~G~lDl~~Vl~S~YfF~ 980 (980)
+|++|++|+|||++|++|+||||
T Consensus 860 ~p~~P~~G~lDl~~V~~S~YfFs 882 (882)
T d1mswd_ 860 MPALPAKGNLNLRDILESDFAFA 882 (882)
T ss_dssp CCCCCCCCSCCGGGGGTCSSCCC
T ss_pred CCCCCCCCCcCHHHhcCCcCCCC
Confidence 89999999999999999999997
|
| >d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} | Back information, alignment and structure |
|---|