Citrus Sinensis ID: 002048

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-----
MEWNQETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSRPEEERVEEEPEMPDITENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPANQSALLQLCSAFNCPIV
ccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHccHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHcccccc
ccccHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHcEccccEccHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHEEcccHHHcccHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHccccEc
MEWNQETLQHLSQCFlhtlspspeprRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKnhlrfrwapasdrnsgptlapiLDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVgnhdfpkhwptLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDstvssggpvATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLttnypalestsdglglvDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLgnvsqsssrdSLAVTAIKFLTNVSTSVHHtlfagegvipqicqnivipnvrlrdedeeLFEMNYVEFIRrdmegsdvdTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSfaanpvanwkdkdcAIYLVVSLATKkagstsistdlvdvQSFFTSVivpelqspdvnafpmlKAGALKFFTMFRiqipkihafqffPDLVRFLGAESNVVHSYAASCIEKLLQVkdeggksrynsadiTPYLSVLMTSLFnafkfpeseenQYIMKCIMRVLGVAeisnevaapcISGLTSILNevcknpkspifnhyLFESVAVLVRRAcqrdpsliSAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIelnrpplssnyMQIFNLLLspdswkrssnvPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMlvlspstdeqgFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVkhgpenlvNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLlsrpeeerveeepempditenmGYTTAFVNLYnagkkeedplkdikdpkEFLVASLARIsavspgrypqiisenlepaNQSALLQLCsafncpiv
MEWNQETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLfagegvipqiCQNIVIPNVRLRDEDEELFEMNYVefirrdmegsdvdTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKkagstsistdlvDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLlsrpeeerveeepempditenmgYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPANQSALLQLCsafncpiv
MEWNQETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSrpeeerveeepeMPDITENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPANQSALLQLCSAFNCPIV
*************CFL************************NYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPA********LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQ***RDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLL********************MGYTTAFVNLYNA***************EFLVASLARISAVSPGRYPQIISENL****QSALLQLCSAFNC***
*E***ETLQHLSQCFLHTLSPSP***RAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNS**TLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLL**************PDITENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPANQSALLQLCSAFNCPIV
********QHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLS************MPDITENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPANQSALLQLCSAFNCPIV
****QETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSRPEEERVEEEPEMPDITENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPANQSALLQLCSAFNCPIV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEWNQETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSRPEEERVEEEPEMPDITENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPANQSALLQLCSAFNCPIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query975 2.2.26 [Sep-21-2011]
Q9ZPY7972 Exportin-2 OS=Arabidopsis yes no 0.994 0.997 0.744 0.0
Q8AY73971 Exportin-2 OS=Oreochromis yes no 0.965 0.969 0.404 0.0
A5D785971 Exportin-2 OS=Bos taurus yes no 0.965 0.969 0.395 0.0
Q9PTU3971 Exportin-2 OS=Pagrus majo N/A no 0.965 0.969 0.398 0.0
Q6GMY9971 Exportin-2 OS=Xenopus lae N/A no 0.962 0.966 0.392 0.0
P55060971 Exportin-2 OS=Homo sapien yes no 0.965 0.969 0.394 0.0
Q7SZC2971 Exportin-2 OS=Danio rerio yes no 0.965 0.969 0.4 0.0
Q9ERK4971 Exportin-2 OS=Mus musculu yes no 0.962 0.966 0.393 0.0
Q5R9J2971 Exportin-2 OS=Pongo abeli yes no 0.965 0.969 0.392 0.0
Q9XZU1975 Exportin-2 OS=Drosophila yes no 0.975 0.975 0.371 0.0
>sp|Q9ZPY7|XPO2_ARATH Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=1 SV=1 Back     alignment and function desciption
 Score = 1521 bits (3938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 726/975 (74%), Positives = 846/975 (86%), Gaps = 5/975 (0%)

Query: 1   MEWNQETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIR 60
           MEWN+ETL  LSQCFL+TLSP PEPRR AER+L++ AD+ NYGLAVLRLVAE  IDEQ R
Sbjct: 1   MEWNRETLVFLSQCFLNTLSPIPEPRRTAERALSDAADQANYGLAVLRLVAEPAIDEQTR 60

Query: 61  HAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEA 120
           HAAAVNFKNHLR RW PA D  SG  ++PI+D+EK+QIK+LIV LML+++PRIQSQLSEA
Sbjct: 61  HAAAVNFKNHLRSRWHPAGD--SG--ISPIVDSEKEQIKTLIVSLMLSASPRIQSQLSEA 116

Query: 121 LVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLL 180
           L V+G HDFPK WP LLPELIANL++AA + +YVS+NGILGTA+SIFKKF Y+++T+ L 
Sbjct: 117 LTVIGKHDFPKAWPALLPELIANLQNAALAGDYVSVNGILGTASSIFKKFSYEYRTDALF 176

Query: 181 LDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQEL 240
           +DLKYCLDNFAAPL EIFLKT++LIDS  SSGG    LK LFESQRLCC IFYSLNFQ+L
Sbjct: 177 VDLKYCLDNFAAPLTEIFLKTSSLIDSAASSGGSPPILKPLFESQRLCCTIFYSLNFQDL 236

Query: 241 PEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQG 300
           PEFFEDHM+EWM EFKKYL++NYPALEST +GL LVD LRAA+CENI+ Y++ NEEEFQG
Sbjct: 237 PEFFEDHMKEWMGEFKKYLSSNYPALESTEEGLTLVDDLRAAICENINHYIEKNEEEFQG 296

Query: 301 YLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVI 360
           +LN+FA  VWTLL +VS+S SRD LA TAIKFLT+VSTSVHH LFAG+ VI +ICQ+IVI
Sbjct: 297 FLNEFASVVWTLLRDVSKSPSRDQLATTAIKFLTSVSTSVHHALFAGDNVIKEICQSIVI 356

Query: 361 PNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQI 420
           PNV LR EDEE+FEMNY+EFIRRDMEGSDVDTRRRIACELLKG+AT+Y+  V E VS++I
Sbjct: 357 PNVSLRVEDEEIFEMNYIEFIRRDMEGSDVDTRRRIACELLKGLATNYKTQVTEVVSLEI 416

Query: 421 QNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSP 480
           Q LL+SF+ANP ANWKDKDCAIYLVVSL+TKKAG  S+STDL+DVQ+FF ++I+PELQS 
Sbjct: 417 QRLLSSFSANPSANWKDKDCAIYLVVSLSTKKAGGASVSTDLIDVQNFFANIILPELQSR 476

Query: 481 DVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540
           DVN+FPMLKAG+LKF TMFR  IPK  A Q FP+LVRFL AESNVVHSYAASCIEKLL V
Sbjct: 477 DVNSFPMLKAGSLKFLTMFRSHIPKPFAMQLFPELVRFLKAESNVVHSYAASCIEKLLLV 536

Query: 541 KDEGGK-SRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAA 599
           K+EG + +RY + D++P+L  LMT+LF+A KFPESEENQY+MKCIMRVLGVA+IS EVA 
Sbjct: 537 KEEGARGNRYAAGDLSPFLLQLMTNLFDALKFPESEENQYLMKCIMRVLGVADISAEVAG 596

Query: 600 PCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIIL 659
           PCI GLTSIL+EVCKNPK+PIFNHYLFESVAVLVRRAC+RD SLISAFE S+ PSLQ+IL
Sbjct: 597 PCIGGLTSILSEVCKNPKNPIFNHYLFESVAVLVRRACERDISLISAFETSLFPSLQMIL 656

Query: 660 QNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFL 719
            ND+TEFLPY FQLLAQL+ELNRP LS NYMQIF LLLSP+SWKRS NVPALVRLLQAFL
Sbjct: 657 ANDITEFLPYGFQLLAQLVELNRPTLSPNYMQIFLLLLSPESWKRSGNVPALVRLLQAFL 716

Query: 720 QKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVL 779
           QK P E+ QE +L +VLGIF  LV SPSTDEQGFY+LNTI+E+L+Y VIA ++  +W  L
Sbjct: 717 QKAPHEVTQENRLSQVLGIFEKLVASPSTDEQGFYILNTIIENLDYSVIAPYMKGVWSAL 776

Query: 780 FTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLIT 839
           FTR+QNK+TVKF KSL+IFMSLFLVKHG   LV TMN VQ  II  I+E  WIPNLKLI 
Sbjct: 777 FTRVQNKKTVKFQKSLVIFMSLFLVKHGQAYLVETMNTVQPNIITAIVEHFWIPNLKLIM 836

Query: 840 GAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSRPEEERVEEEPEMPDIT 899
           G++E KLTAVA+TRLICE+P LLD +A + WGKMLDSIVTL+SRPE+ERV +EPEMP+I+
Sbjct: 837 GSMEVKLTAVAATRLICETPALLDPSAAKLWGKMLDSIVTLVSRPEQERVLDEPEMPEIS 896

Query: 900 ENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPAN 959
           EN+GYT AFV L+NAGKKEEDPLKDIKDPK+FLVAS++R+S+ SPGRYPQII ENLE AN
Sbjct: 897 ENVGYTAAFVKLHNAGKKEEDPLKDIKDPKQFLVASVSRLSSASPGRYPQIIGENLEQAN 956

Query: 960 QSALLQLCSAFNCPI 974
           Q+AL+QLC+A+NC I
Sbjct: 957 QTALIQLCNAYNCGI 971
Export receptor for importin alpha. Mediates importin-alpha re-export from the nucleus to the cytoplasm after import substrates have been released into the nucleoplasm.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8AY73|XPO2_ORENI Exportin-2 OS=Oreochromis niloticus GN=cse1l PE=2 SV=1 Back     alignment and function description
>sp|A5D785|XPO2_BOVIN Exportin-2 OS=Bos taurus GN=CSE1L PE=2 SV=1 Back     alignment and function description
>sp|Q9PTU3|XPO2_PAGMA Exportin-2 OS=Pagrus major GN=cse1l PE=2 SV=1 Back     alignment and function description
>sp|Q6GMY9|XPO2_XENLA Exportin-2 OS=Xenopus laevis GN=cse1l PE=2 SV=1 Back     alignment and function description
>sp|P55060|XPO2_HUMAN Exportin-2 OS=Homo sapiens GN=CSE1L PE=1 SV=3 Back     alignment and function description
>sp|Q7SZC2|XPO2_DANRE Exportin-2 OS=Danio rerio GN=cse1l PE=2 SV=1 Back     alignment and function description
>sp|Q9ERK4|XPO2_MOUSE Exportin-2 OS=Mus musculus GN=Cse1l PE=2 SV=1 Back     alignment and function description
>sp|Q5R9J2|XPO2_PONAB Exportin-2 OS=Pongo abelii GN=CSE1L PE=2 SV=1 Back     alignment and function description
>sp|Q9XZU1|XPO2_DROME Exportin-2 OS=Drosophila melanogaster GN=Cas PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query975
224127955969 predicted protein [Populus trichocarpa] 0.991 0.997 0.796 0.0
224064283969 predicted protein [Populus trichocarpa] 0.991 0.997 0.791 0.0
255564665969 importin-alpha re-exporter, putative [Ri 0.986 0.992 0.789 0.0
297824733972 hypothetical protein ARALYDRAFT_904119 [ 0.994 0.997 0.758 0.0
449526974977 PREDICTED: LOW QUALITY PROTEIN: exportin 0.998 0.996 0.767 0.0
449432040977 PREDICTED: exportin-2-like [Cucumis sati 0.998 0.996 0.765 0.0
356560135962 PREDICTED: exportin-2-like isoform 1 [Gl 0.985 0.998 0.760 0.0
356520274962 PREDICTED: exportin-2-like [Glycine max] 0.985 0.998 0.757 0.0
15226001972 exportin-2 [Arabidopsis thaliana] gi|201 0.994 0.997 0.744 0.0
359489740979 PREDICTED: exportin-2-like [Vitis vinife 1.0 0.995 0.753 0.0
>gi|224127955|ref|XP_002320205.1| predicted protein [Populus trichocarpa] gi|222860978|gb|EEE98520.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1613 bits (4176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 778/977 (79%), Positives = 866/977 (88%), Gaps = 10/977 (1%)

Query: 1   MEWNQETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIR 60
           ME+N E    LSQCFLHTLSP PEPRRAAE  LAE+AD PNY LAVLRLVAE +I+EQIR
Sbjct: 1   MEYNPE---FLSQCFLHTLSPQPEPRRAAESKLAELADHPNYALAVLRLVAEPSINEQIR 57

Query: 61  HAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEA 120
           HAAAVNFKNHLR RWAP+ D     +  PILDAEKDQIK+LIV LML+STPRIQSQLSE+
Sbjct: 58  HAAAVNFKNHLRSRWAPSPDS----SFTPILDAEKDQIKTLIVTLMLSSTPRIQSQLSES 113

Query: 121 LVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLL 180
           L ++G HDFPK WPTLLPEL++NL+ A+QSN+Y SINGILGTANSIFKKFRYQ+KTNDLL
Sbjct: 114 LSLIGKHDFPKSWPTLLPELVSNLRAASQSNDYASINGILGTANSIFKKFRYQYKTNDLL 173

Query: 181 LDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGG--PVATLKLLFESQRLCCRIFYSLNFQ 238
           LDLKYCLDNF+APLLE+FL+TAALIDS VSSGG  PV TLK LFESQRLCCRIF+SLNFQ
Sbjct: 174 LDLKYCLDNFSAPLLEMFLRTAALIDSMVSSGGGSPV-TLKPLFESQRLCCRIFFSLNFQ 232

Query: 239 ELPEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEF 298
           ELPEFFEDHM+EWM EFKKYLT  YP LES+++GLGLVD LRAAVCENISLYM+ NEEEF
Sbjct: 233 ELPEFFEDHMKEWMAEFKKYLTNGYPVLESSAEGLGLVDELRAAVCENISLYMEKNEEEF 292

Query: 299 QGYLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNI 358
           + YLNDFA AVWTLLGNVSQSSSRDSLAVTAIKFLT VSTSVHHTLFA +GVIPQICQ+I
Sbjct: 293 KDYLNDFAQAVWTLLGNVSQSSSRDSLAVTAIKFLTTVSTSVHHTLFAVDGVIPQICQSI 352

Query: 359 VIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSV 418
           VIPNVRLRDEDEELFEMNY+EFIRRDMEGSD+DT+RRIACELLKGIAT+Y+Q V+  VSV
Sbjct: 353 VIPNVRLRDEDEELFEMNYIEFIRRDMEGSDIDTKRRIACELLKGIATNYKQQVISIVSV 412

Query: 419 QIQNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQ 478
           QIQNLLTS+AANP A+WKDKDCAIYLVVSL+TKKAG TS+STDLVDVQSFF SVIVPELQ
Sbjct: 413 QIQNLLTSYAANPAAHWKDKDCAIYLVVSLSTKKAGGTSVSTDLVDVQSFFASVIVPELQ 472

Query: 479 SPDVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLL 538
           S DVNAFPMLKAGALKFFTMFR QIPK    Q FP L++FLGAESNVVHSYAASCIEKLL
Sbjct: 473 SQDVNAFPMLKAGALKFFTMFRNQIPKPLVLQLFPYLIQFLGAESNVVHSYAASCIEKLL 532

Query: 539 QVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVA 598
            VKDEGG+SRY S D+ P L VLM +LF A +FPESEENQYIMK IMRVLGVAEI+ E+A
Sbjct: 533 LVKDEGGRSRYTSTDVAPNLLVLMNNLFTALRFPESEENQYIMKSIMRVLGVAEITPEIA 592

Query: 599 APCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQII 658
            PCI+GLTSIL EVCKNPK+PIFNHYLFESVAVLVRRAC+RD SLI +FE S+ P LQ I
Sbjct: 593 GPCIAGLTSILAEVCKNPKNPIFNHYLFESVAVLVRRACERDISLIPSFETSLFPRLQEI 652

Query: 659 LQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAF 718
           L NDVTEFLPYAFQLLAQL+ELNRPP+S  YM+IF LLLSPDSW R+SNVPALVRLLQAF
Sbjct: 653 LGNDVTEFLPYAFQLLAQLVELNRPPISDTYMEIFKLLLSPDSWNRNSNVPALVRLLQAF 712

Query: 719 LQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGV 778
           L+K P ++ QEG+L +VLGIFN LV +PSTDEQGFYVLNT++E+L+YG IA +V HIW  
Sbjct: 713 LEKAPEKVTQEGRLAQVLGIFNRLVSAPSTDEQGFYVLNTVIENLDYGTIAPYVGHIWNA 772

Query: 779 LFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLI 838
           LF+RLQ+KRTVKF+KSL IFMSLF+VKHG  NLV++MN+VQ+GI LVILEQ  IPNLKLI
Sbjct: 773 LFSRLQSKRTVKFIKSLSIFMSLFVVKHGSANLVDSMNSVQAGIFLVILEQFLIPNLKLI 832

Query: 839 TGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSRPEEERVEEEPEMPDI 898
           TG IE KL +VAS RLICESP LLDA AVRHWGKMLDSIVTLLSR EE+RV +EPEMPDI
Sbjct: 833 TGRIEVKLVSVASIRLICESPALLDAGAVRHWGKMLDSIVTLLSRTEEDRVGDEPEMPDI 892

Query: 899 TENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPA 958
            EN GYT +FVNLYNAGKKEEDPLKDIKDPKEFL ASLA++SA+SP R+PQII+ENL+PA
Sbjct: 893 AENAGYTVSFVNLYNAGKKEEDPLKDIKDPKEFLAASLAKLSALSPARFPQIINENLDPA 952

Query: 959 NQSALLQLCSAFNCPIV 975
           NQ+ LLQ+CS +NCPIV
Sbjct: 953 NQAVLLQICSTYNCPIV 969

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224064283|ref|XP_002301415.1| predicted protein [Populus trichocarpa] gi|222843141|gb|EEE80688.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564665|ref|XP_002523327.1| importin-alpha re-exporter, putative [Ricinus communis] gi|223537415|gb|EEF39043.1| importin-alpha re-exporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297824733|ref|XP_002880249.1| hypothetical protein ARALYDRAFT_904119 [Arabidopsis lyrata subsp. lyrata] gi|297326088|gb|EFH56508.1| hypothetical protein ARALYDRAFT_904119 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449526974|ref|XP_004170488.1| PREDICTED: LOW QUALITY PROTEIN: exportin-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432040|ref|XP_004133808.1| PREDICTED: exportin-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356560135|ref|XP_003548351.1| PREDICTED: exportin-2-like isoform 1 [Glycine max] gi|356560137|ref|XP_003548352.1| PREDICTED: exportin-2-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356520274|ref|XP_003528788.1| PREDICTED: exportin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|15226001|ref|NP_182175.1| exportin-2 [Arabidopsis thaliana] gi|20138095|sp|Q9ZPY7.1|XPO2_ARATH RecName: Full=Exportin-2; Short=Exp2; AltName: Full=Cellular apoptosis susceptibility protein homolog; AltName: Full=Importin-alpha re-exporter gi|4415933|gb|AAD20163.1| putative cellular apoptosis susceptibility protein [Arabidopsis thaliana] gi|18077710|emb|CAC83300.1| cellular apoptosis susceptibility protein homologue [Arabidopsis thaliana] gi|20197825|gb|AAM15266.1| putative cellular apoptosis susceptibility protein [Arabidopsis thaliana] gi|330255619|gb|AEC10713.1| exportin-2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359489740|ref|XP_002264036.2| PREDICTED: exportin-2-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query975
TAIR|locus:2039109972 AT2G46520 "AT2G46520" [Arabido 0.994 0.997 0.735 0.0
UNIPROTKB|A5D785971 CSE1L "Exportin-2" [Bos taurus 0.973 0.977 0.396 6.2e-188
RGD|1307536971 Cse1l "CSE1 chromosome segrega 0.973 0.977 0.396 7.9e-188
UNIPROTKB|F1Q1V0973 CSE1L "Uncharacterized protein 0.973 0.975 0.396 2.1e-187
UNIPROTKB|F1MWN1971 CSE1L "Exportin-2" [Bos taurus 0.973 0.977 0.395 2.7e-187
UNIPROTKB|P55060971 CSE1L "Exportin-2" [Homo sapie 0.973 0.977 0.395 2.7e-187
MGI|MGI:1339951971 Cse1l "chromosome segregation 0.973 0.977 0.394 1.5e-186
ZFIN|ZDB-GENE-990603-1971 cse1l "chromosome segregation 0.974 0.978 0.4 2.4e-186
UNIPROTKB|E1BV44971 CSE1L "Uncharacterized protein 0.973 0.977 0.389 4.8e-181
UNIPROTKB|F8W904915 CSE1L "Exportin-2" [Homo sapie 0.68 0.724 0.389 1.3e-176
TAIR|locus:2039109 AT2G46520 "AT2G46520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3721 (1314.9 bits), Expect = 0., P = 0.
 Identities = 717/975 (73%), Positives = 835/975 (85%)

Query:     1 MEWNQETLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIR 60
             MEWN+ETL  LSQCFL+TLSP PEPRR AER+L++ AD+ NYGLAVLRLVAE  IDEQ R
Sbjct:     1 MEWNRETLVFLSQCFLNTLSPIPEPRRTAERALSDAADQANYGLAVLRLVAEPAIDEQTR 60

Query:    61 HAAAVNFKNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEA 120
             HAAAVNFKNHLR RW PA D  SG  ++PI+D+EK+QIK+LIV LML+++PRIQSQLSEA
Sbjct:    61 HAAAVNFKNHLRSRWHPAGD--SG--ISPIVDSEKEQIKTLIVSLMLSASPRIQSQLSEA 116

Query:   121 LVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLL 180
             L V+G HDFPK WP LLPELIANL++AA + +YVS+NGILGTA+SIFKKF Y+++T+ L 
Sbjct:   117 LTVIGKHDFPKAWPALLPELIANLQNAALAGDYVSVNGILGTASSIFKKFSYEYRTDALF 176

Query:   181 LDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQEL 240
             +DLKYCLDNFAAPL EIFLKT++LIDS  SSGG    LK LFESQRLCC IFYSLNFQ+L
Sbjct:   177 VDLKYCLDNFAAPLTEIFLKTSSLIDSAASSGGSPPILKPLFESQRLCCTIFYSLNFQDL 236

Query:   241 PEFFEDHMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQG 300
             PEFFEDHM+EWM EFKKYL++NYPALEST +GL LVD LRAA+CENI+ Y++ NEEEFQG
Sbjct:   237 PEFFEDHMKEWMGEFKKYLSSNYPALESTEEGLTLVDDLRAAICENINHYIEKNEEEFQG 296

Query:   301 YLNDFALAVWTLLGNVSQSSSRDSLAVTAIKFLTNVSTSVHHTLFAGEGVIPQICQNIVI 360
             +LN+FA  VWTLL +VS+S SRD LA TAIKFLT+VSTSVHH LFAG+ VI +ICQ+IVI
Sbjct:   297 FLNEFASVVWTLLRDVSKSPSRDQLATTAIKFLTSVSTSVHHALFAGDNVIKEICQSIVI 356

Query:   361 PNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQI 420
             PNV LR EDEE+FEMNY+EFIRRDMEGSDVDTRRRIACELLKG+AT+Y+  V E VS++I
Sbjct:   357 PNVSLRVEDEEIFEMNYIEFIRRDMEGSDVDTRRRIACELLKGLATNYKTQVTEVVSLEI 416

Query:   421 QNLLTSFAANPVANWKDKDCAIYLVVSLATKKAGSTSISTDLVDVQSFFTSVIVPELQSP 480
             Q LL+SF+ANP ANWKDKDCAIYLVVSL+TKKAG  S+STDL+DVQ+FF ++I+PELQS 
Sbjct:   417 QRLLSSFSANPSANWKDKDCAIYLVVSLSTKKAGGASVSTDLIDVQNFFANIILPELQSR 476

Query:   481 DVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQV 540
             DVN+FPMLKAG+LKF TMFR  IPK  A Q FP+LVRFL AESNVVHSYAASCIEKLL V
Sbjct:   477 DVNSFPMLKAGSLKFLTMFRSHIPKPFAMQLFPELVRFLKAESNVVHSYAASCIEKLLLV 536

Query:   541 KDEGGK-SRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGVAEISNEVAA 599
             K+EG + +RY + D++P+L  LMT+LF+A KFPESEENQY+MKCIMRVLGVA+IS EVA 
Sbjct:   537 KEEGARGNRYAAGDLSPFLLQLMTNLFDALKFPESEENQYLMKCIMRVLGVADISAEVAG 596

Query:   600 PCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILPSLQIIL 659
             PCI GLTSIL+EVCKNPK+PIFNHYLFESVAVLVRRAC+RD SLISAFE S+ PSLQ+IL
Sbjct:   597 PCIGGLTSILSEVCKNPKNPIFNHYLFESVAVLVRRACERDISLISAFETSLFPSLQMIL 656

Query:   660 QNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFL 719
              ND+TEFLPY FQLLAQL+ELNRP LS NYMQIF LLLSP+SWKRS NVPALVRLLQAFL
Sbjct:   657 ANDITEFLPYGFQLLAQLVELNRPTLSPNYMQIFLLLLSPESWKRSGNVPALVRLLQAFL 716

Query:   720 QKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVL 779
             QK P E+ QE +L +VLGIF  LV SPSTDEQGFY+LNTI+E+L+Y VIA ++  +W  L
Sbjct:   717 QKAPHEVTQENRLSQVLGIFEKLVASPSTDEQGFYILNTIIENLDYSVIAPYMKGVWSAL 776

Query:   780 FTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLIT 839
             FTR+QNK+TVKF KSL+IFMSLFLVKHG   LV TMN VQ  II  I+E  WIPNLKLI 
Sbjct:   777 FTRVQNKKTVKFQKSLVIFMSLFLVKHGQAYLVETMNTVQPNIITAIVEHFWIPNLKLIM 836

Query:   840 GAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSXXXXXXXXXXXXMPDIT 899
             G++E KLTAVA+TRLICE+P LLD +A + WGKMLDSIVTL+S            MP+I+
Sbjct:   837 GSMEVKLTAVAATRLICETPALLDPSAAKLWGKMLDSIVTLVSRPEQERVLDEPEMPEIS 896

Query:   900 ENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPAN 959
             EN+GYT AFV L+NAGKKEEDPLKDIKDPK+FLVAS++R+S+ SPGRYPQII ENLE AN
Sbjct:   897 ENVGYTAAFVKLHNAGKKEEDPLKDIKDPKQFLVASVSRLSSASPGRYPQIIGENLEQAN 956

Query:   960 QSALLQLCSAFNCPI 974
             Q+AL+QLC+A+NC I
Sbjct:   957 QTALIQLCNAYNCGI 971
GO:0000059 "protein import into nucleus, docking" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0005643 "nuclear pore" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009694 "jasmonic acid metabolic process" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
UNIPROTKB|A5D785 CSE1L "Exportin-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1307536 Cse1l "CSE1 chromosome segregation 1-like (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q1V0 CSE1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWN1 CSE1L "Exportin-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P55060 CSE1L "Exportin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1339951 Cse1l "chromosome segregation 1-like (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990603-1 cse1l "chromosome segregation 1-like (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BV44 CSE1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F8W904 CSE1L "Exportin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P33307CSE1_YEASTNo assigned EC number0.30150.93640.9510yesno
Q9XZU1XPO2_DROMENo assigned EC number0.37130.97530.9753yesno
A5D785XPO2_BOVINNo assigned EC number0.39580.96510.9691yesno
Q8AY73XPO2_ORENINo assigned EC number0.40410.96510.9691yesno
Q54E36XPO2_DICDINo assigned EC number0.33640.93740.9610yesno
Q9ERK4XPO2_MOUSENo assigned EC number0.39350.96200.9660yesno
O13671CSE1_SCHPONo assigned EC number0.35320.94250.9503yesno
Q9ZPY7XPO2_ARATHNo assigned EC number0.74460.99480.9979yesno
Q5R9J2XPO2_PONABNo assigned EC number0.39270.96510.9691yesno
P55060XPO2_HUMANNo assigned EC number0.39480.96510.9691yesno
Q7SZC2XPO2_DANRENo assigned EC number0.40.96510.9691yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query975
pfam03378435 pfam03378, CAS_CSE1, CAS/CSE protein, C-terminus 0.0
pfam08506370 pfam08506, Cse1, Cse1 1e-173
COG5657947 COG5657, CSE1, CAS/CSE protein involved in chromos 1e-102
COG5656970 COG5656, SXM1, Importin, protein involved in nucle 6e-13
pfam0381071 pfam03810, IBN_N, Importin-beta N-terminal domain 3e-07
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 2e-06
COG5656970 COG5656, SXM1, Importin, protein involved in nucle 8e-04
COG5215858 COG5215, KAP95, Karyopherin (importin) beta [Intra 0.001
>gnl|CDD|217521 pfam03378, CAS_CSE1, CAS/CSE protein, C-terminus Back     alignment and domain information 
 Score =  559 bits (1443), Expect = 0.0
 Identities = 189/436 (43%), Positives = 265/436 (60%), Gaps = 5/436 (1%)

Query: 535 EKLLQVKDEGGKSRYNSADITPYLSVLMTSLFNAFKFPESEENQYIMKCIMRVLGV-AEI 593
           E+LL ++DE G+  +  ADI P+   L+T LF A + P S+EN+Y+MKCIMRVL V  E 
Sbjct: 1   ERLLTLRDEQGQPIFTPADIAPFAKDLLTHLFAALEKPGSQENEYLMKCIMRVLIVIQEG 60

Query: 594 SNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILP 653
               A   +  LT+IL  V KNP +P FNHYLFE++  L+R AC+ DP+ +S FE ++ P
Sbjct: 61  VLPYADTVLQHLTNILLVVSKNPSNPRFNHYLFEAIGALIRFACKADPAAVSKFEEALFP 120

Query: 654 SLQIILQNDVTEFLPYAFQLLAQLIELNR-PPLSSNYMQIFNLLLSPDSWKRSSNVPALV 712
             Q ILQ DVTEF+PY FQLLAQL+E N    L   YM +F  LLSP  W+R  NVPALV
Sbjct: 121 PFQAILQEDVTEFMPYVFQLLAQLLEANPSGTLPDYYMALFPPLLSPALWERRGNVPALV 180

Query: 713 RLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFV 772
           RLL AF+ K  +EI  E KL  +LGIF  L+ S + D QGFY+L +++E     V+  + 
Sbjct: 181 RLLSAFIPKASQEIVAENKLEPILGIFQKLIASKANDHQGFYLLESVIEYFPPEVLEPYF 240

Query: 773 PHIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWI 832
             I+ +LF RLQN +T KF K  ++F  L+  K+G + L+  ++A+Q G+  +I   I +
Sbjct: 241 KTIFSLLFQRLQNSKTEKFKKRFVVFYHLYSAKYGADFLIQLIDAIQPGVFGMIYLNIIL 300

Query: 833 PNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSRPEEERVEEE 892
           P  + + G ++ KL AV+ T+L+CESP   D    + WG +L +++ LL  P +    +E
Sbjct: 301 PETQKVAGPLDRKLAAVSYTKLLCESPAFADRYP-KGWGFLLQALLKLLELPPDPATPDE 359

Query: 893 PEMPDI--TENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQI 950
            E  D    ++MGY   F  L  AGKKE DP  +I D K+++  SL + S   PGR  QI
Sbjct: 360 DEFIDEADVDDMGYGVGFTQLNTAGKKERDPFPEIPDVKQWVAQSLKKASQAHPGRISQI 419

Query: 951 ISENLEPANQSALLQL 966
           +SE L    + AL + 
Sbjct: 420 VSERLNAEAKQALQKY 435

Mammalian cellular apoptosis susceptibility (CAS) proteins are homologous to the yeast chromosome-segregation protein, CSE1. This family aligns the C-terminal halves (approximately). CAS is involved in both cellular apoptosis and proliferation. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle, as is the protein MEK, which is thought to regulate the intracellular localisation (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins. Length = 435
>gnl|CDD|219873 pfam08506, Cse1, Cse1 Back     alignment and domain information
>gnl|CDD|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 975
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 100.0
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
COG5656970 SXM1 Importin, protein involved in nuclear import 100.0
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 100.0
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 100.0
KOG22741005 consensus Predicted importin 9 [Intracellular traf 100.0
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 100.0
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
COG51011053 CRM1 Importin beta-related nuclear transport recep 99.85
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 99.83
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.67
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.59
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 99.59
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 99.38
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.29
KOG2081559 consensus Nuclear transport regulator [Intracellul 99.19
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.09
KOG20201041 consensus Nuclear transport receptor CRM1/MSN5 (im 99.04
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 98.83
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.63
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 98.61
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.02
PTZ00429746 beta-adaptin; Provisional 98.01
KOG0212 675 consensus Uncharacterized conserved protein [Funct 97.91
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.87
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.84
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.77
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 97.72
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 97.61
KOG1242569 consensus Protein containing adaptin N-terminal re 97.59
KOG22741005 consensus Predicted importin 9 [Intracellular traf 97.51
PTZ00429 746 beta-adaptin; Provisional 97.48
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 97.48
KOG09151702 consensus Uncharacterized conserved protein [Funct 97.44
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.2
KOG1242569 consensus Protein containing adaptin N-terminal re 97.15
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 96.99
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.99
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.9
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.85
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 96.85
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 96.84
KOG1410 1082 consensus Nuclear transport receptor RanBP16 (impo 96.84
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.83
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.77
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 96.76
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.6
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.55
KOG12481176 consensus Uncharacterized conserved protein [Funct 96.51
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.47
KOG0212675 consensus Uncharacterized conserved protein [Funct 96.33
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.26
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 96.01
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 95.82
PF08167165 RIX1: rRNA processing/ribosome biogenesis 95.71
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 95.64
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 95.62
COG5181 975 HSH155 U2 snRNP spliceosome subunit [RNA processin 95.6
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 95.6
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 95.46
PRK09687280 putative lyase; Provisional 95.29
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 95.15
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 94.92
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 94.81
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 94.77
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 94.55
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 94.49
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 94.41
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 94.39
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 94.34
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 94.26
PRK09687280 putative lyase; Provisional 94.21
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 94.15
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 94.11
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 94.06
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 93.67
PF08167165 RIX1: rRNA processing/ribosome biogenesis 93.55
COG5096 757 Vesicle coat complex, various subunits [Intracellu 93.02
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 92.97
PF05004309 IFRD: Interferon-related developmental regulator ( 92.81
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 92.63
PF14500262 MMS19_N: Dos2-interacting transcription regulator 92.53
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 91.58
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 91.26
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 90.5
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 90.41
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 90.3
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 89.69
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 89.62
KOG2956516 consensus CLIP-associating protein [General functi 89.14
PF1036392 DUF2435: Protein of unknown function (DUF2435) 88.81
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 88.48
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 88.46
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 87.82
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 87.67
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 87.6
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 87.4
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 86.73
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 85.94
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 85.76
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 85.3
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 84.67
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 84.47
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 84.24
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 83.33
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 83.32
KOG4653982 consensus Uncharacterized conserved protein [Funct 83.07
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 82.59
PF05004309 IFRD: Interferon-related developmental regulator ( 81.42
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 81.21
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-150  Score=1226.42  Aligned_cols=952  Identities=46%  Similarity=0.794  Sum_probs=904.2

Q ss_pred             hHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 002048            7 TLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT   86 (975)
Q Consensus         7 ~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~   86 (975)
                      +++.|.++|++|++||+++||.||..|++++.++||...|++++.+++.|.++|.+|+++|||+|||+|.+..++     
T Consensus         3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~-----   77 (960)
T KOG1992|consen    3 NLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS-----   77 (960)
T ss_pred             cHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC-----
Confidence            688999999999999999999999999999999999999999999999999999999999999999999987765     


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048           87 LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI  166 (975)
Q Consensus        87 ~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i  166 (975)
                      +..|.+++|+.||..|+..|.+.+..|+.|++++++.|+++|||+.||+|+|++++.++++    |.+...|.|.+.|++
T Consensus        78 ~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~----D~~~~~gVL~tahsi  153 (960)
T KOG1992|consen   78 PIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSG----DFNVINGVLVTAHSI  153 (960)
T ss_pred             ccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcccc----chHHHHHHHHHHHHH
Confidence            2479999999999999999999999999999999999999999999999999999999999    999999999999999


Q ss_pred             HHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHH
Q 002048          167 FKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFED  246 (975)
Q Consensus       167 ~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~  246 (975)
                      ||+||+.+|||+++.||+.+++.++.++..+|.+....+...   ..+...++.++..+.+++|+||+++++|+||||||
T Consensus       154 Fkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~---~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEd  230 (960)
T KOG1992|consen  154 FKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRH---ANDAAALNILFGVLLLICKLFYSLNFQDIPEFFED  230 (960)
T ss_pred             HHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhc---ccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHh
Confidence            999999999999999999999999999999999988776554   45556778899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccCCcccCCCCcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchHHH
Q 002048          247 HMREWMTEFKKYLTTNYPALESTSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDSLA  326 (975)
Q Consensus       247 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~  326 (975)
                      ||..||+.|+++++.++|.+.+++++++.+.++|..+|++++.|.+||+++|.+|+++|++.+|+++.+++..++||.++
T Consensus       231 nm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lv  310 (960)
T KOG1992|consen  231 NMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLV  310 (960)
T ss_pred             hHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHH
Confidence            99999999999999999988765568899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHHHH
Q 002048          327 VTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIA  405 (975)
Q Consensus       327 ~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~L~  405 (975)
                      +.+++||+++ ++++|..+|.+.+.+.++|+.+++|+++++++|+|+|||||.||+||+++|+|.+|||++|+++++.|+
T Consensus       311 s~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~  390 (960)
T KOG1992|consen  311 SKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLC  390 (960)
T ss_pred             HHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHH
Confidence            9999999999 889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh---cCCCccccCcccHHHHHHHhcccccCCCCC
Q 002048          406 THYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK---AGSTSISTDLVDVQSFFTSVIVPELQSPDV  482 (975)
Q Consensus       406 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~---~~g~~~~~~~~~~~~~l~~~v~p~l~~~~~  482 (975)
                      ++|...+++++..+++..+++|..+|+.||+.||.+++++.+++.+.   ++|++++++.+|+.+||.++++|+|.++++
T Consensus       391 ~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~v  470 (960)
T KOG1992|consen  391 KNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNV  470 (960)
T ss_pred             HHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcc
Confidence            99999999999999999999999999999999999999999999886   789999999999999999999999999888


Q ss_pred             CCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCCccccccccccchHHHHH
Q 002048          483 NAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSRYNSADITPYLSVLM  562 (975)
Q Consensus       483 ~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~~~~~~~~~l~p~l~~il  562 (975)
                      +++|+||+.+++++..||++++++++..++|.++.+|+.+..+|+.|||.|+++++..++..+...|.++.+.||+..++
T Consensus       471 n~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll  550 (960)
T KOG1992|consen  471 NEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILL  550 (960)
T ss_pred             ccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999998876666789999999999999


Q ss_pred             HHHHHhcCCCCchhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhhhcCc
Q 002048          563 TSLFNAFKFPESEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDP  641 (975)
Q Consensus       563 ~~L~~ll~~~~~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~li~~~~~~~~  641 (975)
                      ..||+.++.+++.+|+|+|++|||++. ..+.+.|+++.++..|.+++++.+|||++|.|+|++||+++.+++..|..+|
T Consensus       551 ~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~  630 (960)
T KOG1992|consen  551 TNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANP  630 (960)
T ss_pred             HHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCc
Confidence            999999999988899999999999999 8899999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccCCCccchHHHHHHHHcc
Q 002048          642 SLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQK  721 (975)
Q Consensus       642 ~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~~l~~~~~~L~~~i~~  721 (975)
                      .....++..++|+|+.||++|+.||+||+||+++.+++.+..++++.|+.+||++++|.+|+..|++|+++++|.+|+..
T Consensus       631 ~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~  710 (960)
T KOG1992|consen  631 SAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKT  710 (960)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999988779999999999999999999999999999999999999


Q ss_pred             CccchhccCchHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHH
Q 002048          722 VPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFVKSLLIFMSL  801 (975)
Q Consensus       722 ~~~~~~~~~~~~~il~i~~~ll~~~~~~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~~~~~~~~~i~~~~~  801 (975)
                      |+..+.+.+.+..++++|++++.++.+|.+||.|+.+|+.+++...+.||+.+|+..+++|++++||++|++.+++|+++
T Consensus       711 g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~  790 (960)
T KOG1992|consen  711 GSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSL  790 (960)
T ss_pred             CchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence            99999977679999999999999999999999999999999987778999999999999999999999999999999999


Q ss_pred             HHHHhChHHHHHHHhhhcchhHHHHHHHHhhcCcccccchhhHHHHHHHHHHHhhcCcccccHHHhhhHHHHHHHHHHHh
Q 002048          802 FLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLL  881 (975)
Q Consensus       802 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~w~~~~~~~~~~~~~K~~~lal~~Ll~~~~~~l~~~~~~~~~~il~~~~~ll  881 (975)
                      +++.++....++.++.+|+|++++++.+.|+++.+++.+..+||++.+|.+++++..+...++.+...|+.++..+++++
T Consensus       791 ~~ik~~~~~l~e~~d~IQ~~~fg~l~e~~ii~~l~~i~~~~~rk~~avg~~~l~~e~~~~~d~~y~~l~~~ll~sii~lf  870 (960)
T KOG1992|consen  791 FTIKKGGLMLAEVIDGIQPGMFGMLLENFIIPELPKIILRVDRKIMAVGATGLLTETPELLDQKYAKLWGPLLFSIIVLF  870 (960)
T ss_pred             HHHHhhhHHHHHHHhhcchhHHHHHHHHhccccchhhhhhhhHHHHHHHHhhhhhhcHHhhhHHHHhhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988775555679999999999999


Q ss_pred             cCCCccccCCC-CCCcccccccCcccccccccccCCCCCCCCCCCCChHHHHHHHHHHhhhhCCCCchhhhhhcCCHHHH
Q 002048          882 SRPEEERVEEE-PEMPDITENMGYTTAFVNLYNAGKKEEDPLKDIKDPKEFLVASLARISAVSPGRYPQIISENLEPANQ  960 (975)
Q Consensus       882 ~~~~~~~~~~~-~d~~d~~~~~~~~~~~~~l~~~~~~~~Dp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  960 (975)
                      +.|.+..-.++ .+.++.+++.||+..|++|.++++++.||+.++.|++.|+++.+..+++..||++++.+..+|+||.|
T Consensus       871 e~p~~~~~~~e~~e~~~i~e~~~f~~~F~~L~~a~~k~~Dpl~~i~~~k~y~a~sl~~~~~~~~g~~~~~i~~~l~~e~q  950 (960)
T KOG1992|consen  871 ELPSERTVLDEEEEMAEIEEDPGFQAAFSRLAYAGKKPHDPLAQIKDPKQYLAQSLNKLSTASPGRFPQTISTSLPPENQ  950 (960)
T ss_pred             hCChhhhccCchhhhhhhhcccchhHHHHHHHcCCCCCCCchhhhhhHHHHHHHHHHHHhhcCCCCchhhhcccCCHHHH
Confidence            99776322222 23334555679999999999999999999999999999999999999999999999989888999999


Q ss_pred             HHHHHHHHhc
Q 002048          961 SALLQLCSAF  970 (975)
Q Consensus       961 ~~l~~~~~~~  970 (975)
                      .+||+|++.+
T Consensus       951 ~~Lq~~~~~~  960 (960)
T KOG1992|consen  951 TYLQSYLQAA  960 (960)
T ss_pred             HHHHHHhhcC
Confidence            9999998753

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query975
1z3h_A968 The Exportin Cse1 In Its Cargo-free, Cytoplasmic St 1e-115
1wa5_C960 Crystal Structure Of The Exportin Cse1p Complexed W 1e-114
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State Length = 968 Back     alignment and structure 
Iteration: 1

 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 291/965 (30%), Positives = 494/965 (51%), Gaps = 52/965 (5%)
Query: 27  RAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT 86
           + +ER+L ++  +  +GL +L ++A   +    R A A+ FKN ++ +W    D N G  
Sbjct: 21  KTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWV---DEN-GNH 76
Query: 87  LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKD 146
           L P  + E   IK  IV LM++    +Q Q+ EA+  + + DFP  WPTLL +L + L +
Sbjct: 77  LLPANNVE--LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSN 134
Query: 147 AAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALID 206
               ++ V+  G+L  A+SIFK++R  F++++L L++K  LD F AP L + LKT   +D
Sbjct: 135 ----DDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNL-LKT---VD 186
Query: 207 STVSSG-GPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDHMREWMTEFKKYLTTNYPA 265
             +++     A+L +LF+   +  +++Y  N Q++PEFFED+++  M  F KYL+ + P 
Sbjct: 187 EQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPL 246
Query: 266 LES--TSDGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRD 323
           LE    ++   ++  +++++ E + LY    E+ F   +N+F    W LL ++S     D
Sbjct: 247 LEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306
Query: 324 SLAVTAIKFLTNVS-TSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIR 382
            L   ++ FLT V+    +  +F  E  +  I + I++PNV LR+ED ELFE + +E+IR
Sbjct: 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIR 366
Query: 383 RDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAI 442
           RD+EGSD DTRRR   + LK +       V       ++  +  + ++P  NWK KD  I
Sbjct: 367 RDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYI 426
Query: 443 YLVVSLATK----KAGSTSISTDLVDVQSFFTSVIVPELQSPDVNAFPMLKAGALKFFTM 498
           YL  +LA       AG +S + +L++V  FFT  I P+L S ++    +L+  A+K+   
Sbjct: 427 YLFTALAINGNITNAGVSS-TNNLLNVVDFFTKEIAPDLTSNNIPHI-ILRVDAIKYIYT 484
Query: 499 FRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGGKSR--YNSADITP 556
           FR Q+ K    +  P L  FL  +  VV++YAA  IEK+L +++        ++  DI+ 
Sbjct: 485 FRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544
Query: 557 YLSVLMTSLFNAF----KFPES-EENQYIMKCIMRVLGVAEISNEVAAP-CISGLTSILN 610
              +L+ +L          PE   EN+++M+ I RVL  +E S +   P  ++    I+ 
Sbjct: 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVT 604
Query: 611 EVCKNPKSPIFNHYLFESV-AVLVRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPY 669
            + KNP +P F HY FES+ A+L     Q  P L+     S++P+   +   D+ EF+PY
Sbjct: 605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD----SMMPTFLTVFSEDIQEFIPY 660
Query: 670 AFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVRLLQAFLQKVPREIAQE 729
            FQ++A ++E     +  +   +   LL+P+ W+   N+PA+ RLL++F+ K    I  +
Sbjct: 661 VFQIIAFVVE-QSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFI-KTDSSIFPD 718
Query: 730 GKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTV 789
             L  VLGIF  L+ S + +  GF +L  I+  ++   +  ++  I  +L  RLQN +T 
Sbjct: 719 --LVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTE 776
Query: 790 KFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIW----IPNLKLITGAIEWK 845
           ++VK L +F  L   K G + L++ ++ VQ G    + +QIW    I  L  I   ++ K
Sbjct: 777 RYVKKLTVFFGLISNKLGSDFLIHFIDEVQDG----LFQQIWGNFIITTLPTIGNLLDRK 832
Query: 846 LTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLLSXXXXXXXXXXXXMPDITENMGYT 905
           +  +    ++                 M   I T  S            + ++ E   + 
Sbjct: 833 IALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDLDNLEEISTFG 892
Query: 906 TAFVNLYNAGKKEEDPLKDI---KDPKEFLVASLARISAVSPGRYPQIISENLEPANQSA 962
           + F  L +  +K  DPL +I      + ++  +L + +A+S   +   I   L   NQ  
Sbjct: 893 SHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLNTILPQLTQENQVK 952
Query: 963 LLQLC 967
           L QL 
Sbjct: 953 LNQLL 957
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 960 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query975
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 0.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 2e-62
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 1e-43
1qgr_A876 Protein (importin beta subunit); transport recepto 9e-39
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 2e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 4e-15
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 6e-15
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 2e-13
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 6e-10
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
 Score =  633 bits (1632), Expect = 0.0
 Identities = 266/980 (27%), Positives = 478/980 (48%), Gaps = 42/980 (4%)

Query: 8   LQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNF 67
           L+ +++    ++       + +ER+L ++  +  +GL +L ++A   +    R A A+ F
Sbjct: 4   LETVAKFLAESVIA--STAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFF 61

Query: 68  KNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNH 127
           KN ++ +W   +          +     + IK  IV LM++    +Q Q+ EA+  + + 
Sbjct: 62  KNFIKRKWVDENGN------HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADS 115

Query: 128 DFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCL 187
           DFP  WPTLL +L         +++ V+  G+L  A+SIFK++R  F++++L L++K  L
Sbjct: 116 DFPDRWPTLLSDLA----SRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVL 171

Query: 188 DNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDH 247
           D F AP L +       I +   +    A+L +LF+   +  +++Y  N Q++PEFFED+
Sbjct: 172 DVFTAPFLNLLKTVDEQITA---NENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDN 228

Query: 248 MREWMTEFKKYLTTNYPALESTSDG--LGLVDGLRAAVCENISLYMKMNEEEFQGYLNDF 305
           ++  M  F KYL+ + P LE   +     ++  +++++ E + LY    E+ F   +N+F
Sbjct: 229 IQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEF 288

Query: 306 ALAVWTLLGNVSQSSSRDSLAVTAIKFLTN-VSTSVHHTLFAGEGVIPQICQNIVIPNVR 364
               W LL ++S     D L   ++ FLT       +  +F  E  +  I + I++PNV 
Sbjct: 289 IQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVT 348

Query: 365 LRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLL 424
           LR+ED ELFE + +E+IRRD+EGSD DTRRR   + LK +       V       ++  +
Sbjct: 349 LREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFV 408

Query: 425 TSFAANPVANWKDKDCAIYLVVSLATKKAGS---TSISTDLVDVQSFFTSVIVPELQSPD 481
             + ++P  NWK KD  IYL  +LA     +    S + +L++V  FFT  I P+L S +
Sbjct: 409 DQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN 468

Query: 482 VNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVK 541
           +    +L+  A+K+   FR Q+ K    +  P L  FL  +  VV++YAA  IEK+L ++
Sbjct: 469 IP-HIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIR 527

Query: 542 DEGGKSR--YNSADITPYLSVLMTSLFNAFKFPESE-----ENQYIMKCIMRVLGVAEIS 594
           +        ++  DI+    +L+ +L        S      EN+++M+ I RVL  +E S
Sbjct: 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS 587

Query: 595 -NEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILP 653
              +    ++    I+  + KNP +P F HY FES+  ++          +     S++P
Sbjct: 588 IQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ---RQNLPLLVDSMMP 644

Query: 654 SLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVR 713
           +   +   D+ EF+PY FQ++A ++E     +  +   +   LL+P+ W+   N+PA+ R
Sbjct: 645 TFLTVFSEDIQEFIPYVFQIIAFVVE-QSATIPESIKPLAQPLLAPNVWELKGNIPAVTR 703

Query: 714 LLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVP 773
           LL++F++              VLGIF  L+ S + +  GF +L  I+  ++   +  ++ 
Sbjct: 704 LLKSFIKTDSSIFPDL---VPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIK 760

Query: 774 HIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIP 833
            I  +L  RLQN +T ++VK L +F  L   K G + L++ ++ VQ G+   I     I 
Sbjct: 761 QIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIIT 820

Query: 834 NLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLL-SRPEEERVEEE 892
            L  I   ++ K+  +    ++                  ++SI+    S+       + 
Sbjct: 821 TLPTIGNLLDRKIALIGVLNMVINGQFFQSKYP-TLISSTMNSIIETASSQSIANLKNDY 879

Query: 893 PEMPDITENMGYTTAFVNLYNAGKKEEDPLKDIK---DPKEFLVASLARISAVSPGRYPQ 949
            ++ ++ E   + + F  L +  +K  DPL +I      + ++  +L + +A+S   +  
Sbjct: 880 VDLDNLEEISTFGSHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLN 939

Query: 950 IISENLEPANQSALLQLCSA 969
            I   L   NQ  L QL   
Sbjct: 940 TILPQLTQENQVKLNQLLVG 959
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query975
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2x19_B963 Importin-13; nuclear transport, protein transport; 100.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
2x1g_F971 Cadmus; transport protein, developmental protein, 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 100.0
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 100.0
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.97
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.87
1qgr_A876 Protein (importin beta subunit); transport recepto 99.84
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.8
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.76
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.65
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.44
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.43
2x19_B963 Importin-13; nuclear transport, protein transport; 99.13
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 99.03
2x1g_F971 Cadmus; transport protein, developmental protein, 99.03
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.0
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.73
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 98.67
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 98.65
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.65
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.64
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.46
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.36
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.28
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.21
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 98.08
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.98
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.98
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.95
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.91
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.87
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.84
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.83
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.79
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 97.78
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 97.74
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.74
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.73
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 97.67
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.58
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 97.38
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 97.36
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 97.2
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 97.11
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.99
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 96.77
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.65
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.46
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 96.44
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.38
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.37
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.33
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.19
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 95.64
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 95.58
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 95.5
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 95.16
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 95.15
2db0_A253 253AA long hypothetical protein; heat repeats, hel 95.05
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 95.03
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 94.85
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 94.77
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 94.51
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 93.67
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 92.56
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 92.38
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 91.87
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 91.27
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 90.92
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 90.57
3nmz_A458 APC variant protein; protein-protein complex, arma 90.34
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 90.17
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 89.76
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 89.05
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 88.84
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 88.81
3nmz_A458 APC variant protein; protein-protein complex, arma 86.6
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 86.06
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 84.78
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 84.7
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 84.45
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 80.41
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
Probab=100.00  E-value=7.3e-109  Score=1043.20  Aligned_cols=938  Identities=28%  Similarity=0.523  Sum_probs=820.3

Q ss_pred             hHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 002048            7 TLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT   86 (975)
Q Consensus         7 ~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~   86 (975)
                      |.++|.++|.+++|||+++|  ||++|++++++|||+..|++++.+.+.+.++|++|+++|||.|+++|+...+.     
T Consensus         3 d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~-----   75 (960)
T 1wa5_C            3 DLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGN-----   75 (960)
T ss_dssp             HHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSC-----
T ss_pred             cHHHHHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccC-----
Confidence            47899999999999999988  99999999999999999999999988899999999999999999999865432     


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048           87 LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI  166 (975)
Q Consensus        87 ~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i  166 (975)
                       ..+++++|..||+.+++.+.++++.||++++.+|+.||++|||++||+|++.|++.++++    |+..++|+|.+|++|
T Consensus        76 -~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~----~~~~~~~aL~~l~~i  150 (960)
T 1wa5_C           76 -HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND----DMVTNKGVLTVAHSI  150 (960)
T ss_dssp             -BSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS----CTTHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCC----CHHHHHHHHHHHHHH
Confidence             269999999999999999999999999999999999999999999999999999999988    888999999999999


Q ss_pred             HHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHH
Q 002048          167 FKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFED  246 (975)
Q Consensus       167 ~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~  246 (975)
                      +|+||+.+++++.+.+++.++..+.|+++++|..+.+.+.+.   .++....+.+.++++.++|+|++++++++|+++.+
T Consensus       151 ~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~  227 (960)
T 1wa5_C          151 FKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITAN---ENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED  227 (960)
T ss_dssp             HGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---C--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence            999998778888888899999999999999998765544332   22223345677899999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccCCcccCC-C-CcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchH
Q 002048          247 HMREWMTEFKKYLTTNYPALEST-S-DGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDS  324 (975)
Q Consensus       247 ~~~~~~~~~~~~l~~~~~~l~~~-~-~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~  324 (975)
                      ++..|++.|.+++....|.+..+ + ++.+.++++|+|+|+++.++.++|++.|.+|++.|++.+|+.+.+.+....+++
T Consensus       228 ~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~  307 (960)
T 1wa5_C          228 NIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDI  307 (960)
T ss_dssp             THHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHH
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHH
Confidence            99999999999998766543322 2 357889999999999999999999999999999999999999987665567899


Q ss_pred             HHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHH
Q 002048          325 LAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKG  403 (975)
Q Consensus       325 ~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~  403 (975)
                      ++.++++||+++ +.+.++.+|.+.+++..+++.+++|+|+++++|++.|++||+||++++.|++|.+|+|+||.++|+.
T Consensus       308 ~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~  387 (960)
T 1wa5_C          308 LVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKE  387 (960)
T ss_dssp             HHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHH
Confidence            999999999999 7777788883338999999889999999999999999999999999988777889999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh---cCCCccccCcccHHHHHHHhcccccCCC
Q 002048          404 IATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK---AGSTSISTDLVDVQSFFTSVIVPELQSP  480 (975)
Q Consensus       404 L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~---~~g~~~~~~~~~~~~~l~~~v~p~l~~~  480 (975)
                      |+.++++.+++.+++++.+++++|.++++.+|+.||||++++|+++.++   ..|+...++.+++++|+.++|+|+++++
T Consensus       388 l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~  467 (960)
T 1wa5_C          388 LKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSN  467 (960)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCS
T ss_pred             HHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCC
Confidence            9999999999999999999999998777788999999999999998764   2355545567799999999999999874


Q ss_pred             CCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccC--CCccccccccccchH
Q 002048          481 DVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDE--GGKSRYNSADITPYL  558 (975)
Q Consensus       481 ~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~--~~~~~~~~~~l~p~l  558 (975)
                      + +.+|+||+||||++|+|+++++++.+..+++.++++|.|++.+||.+||.||.+|++..++  .+.+.+.++.+.||+
T Consensus       468 ~-~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l  546 (960)
T 1wa5_C          468 N-IPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST  546 (960)
T ss_dssp             S-CSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred             C-CCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence            3 2499999999999999999999999999999999999999999999999999999986431  122345678899999


Q ss_pred             HHHHHHHHHhcCCCC-----chhhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 002048          559 SVLMTSLFNAFKFPE-----SEENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVL  632 (975)
Q Consensus       559 ~~il~~L~~ll~~~~-----~~~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l  632 (975)
                      +++++.|+.++++..     ..+++.+++++++++. +++++.||+..+++.|...+....++++++.+.++++|||+.+
T Consensus       547 ~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l  626 (960)
T 1wa5_C          547 EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI  626 (960)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence            999999999998852     1257899999999999 9999999999999999999988888999999999999999999


Q ss_pred             HHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccCCCccchH
Q 002048          633 VRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALV  712 (975)
Q Consensus       633 i~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~~l~~~~  712 (975)
                      +++.   .|+....+++.++|++..+|+++..+|.+|++++++.+++..+ ++++.|+++||.++++..|+..++++.++
T Consensus       627 ~~~~---~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  702 (960)
T 1wa5_C          627 LNYT---QRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSA-TIPESIKPLAQPLLAPNVWELKGNIPAVT  702 (960)
T ss_dssp             HHTS---CGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCS-SCCTTTGGGHHHHTSGGGGCCTTTHHHHH
T ss_pred             HhcC---CcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHcCHHHhcCCCCchhHH
Confidence            9983   5788999999999999999999999999999999999999884 59999999999999887898889999999


Q ss_pred             HHHHHHHccCccchhccCchHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCchhhHH
Q 002048          713 RLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFV  792 (975)
Q Consensus       713 ~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~~~~~~  792 (975)
                      ++|.+|+..+++.|.+   ++.+++++++++.++..+..||.+++.++.+++++.+.+|++.++..++++++..+++++.
T Consensus       703 ~~L~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~  779 (960)
T 1wa5_C          703 RLLKSFIKTDSSIFPD---LVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYV  779 (960)
T ss_dssp             HHHHHHHHHHGGGCSC---SHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHH
T ss_pred             HHHHHHHHhChHHHHH---HHHHHHHHHHHhCCCcccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHH
Confidence            9999999999988875   6789999999998776678899999999999985449999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhChHHHHHHHhhhcchhHHHHHHHHhhcCcccccchhhHHHHHHHHHHHhhcCcccccHHHhhhHHH
Q 002048          793 KSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGK  872 (975)
Q Consensus       793 ~~~i~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~w~~~~~~~~~~~~~K~~~lal~~Ll~~~~~~l~~~~~~~~~~  872 (975)
                      +.++.+++.+++.++|+.+++.++++++|.|.+++.+.|+++++++.+.+|||++++||++|+..+ ...|..+...|+.
T Consensus       780 ~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~-~~~~~~~~~~~~~  858 (960)
T 1wa5_C          780 KKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVING-QFFQSKYPTLISS  858 (960)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSC-HHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcc-cccchhHHHHHHH
Confidence            999999999999999999999999999999988899999999999999999999999999999998 3334455678999


Q ss_pred             HHHHHHHHhcCCCccccCCC-CCCcccccccCcccccccccccCCCCCCCCCCC---CChHHHHHHHHHHhhhhCCCCch
Q 002048          873 MLDSIVTLLSRPEEERVEEE-PEMPDITENMGYTTAFVNLYNAGKKEEDPLKDI---KDPKEFLVASLARISAVSPGRYP  948 (975)
Q Consensus       873 il~~~~~ll~~~~~~~~~~~-~d~~d~~~~~~~~~~~~~l~~~~~~~~Dp~~~~---~d~~~~~~~~l~~~~~~~~~~~~  948 (975)
                      ++..+++++.++......+| +|++|+||.+||+.+|.+|...++.++||+.++   .|++.||++.|+++++++||+|.
T Consensus       859 ~~~~i~~l~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~L~~~~~~~~dp~~~i~~~~d~~~~~~~~l~~~~~~~~~~~~  938 (960)
T 1wa5_C          859 TMNSIIETASSQSIANLKNDYVDLDNLEEISTFGSHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFL  938 (960)
T ss_dssp             HHHHHHHHHHSCSTTCSCCSCC-----CCCCCTTCCCCCCGGGCCCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHhCCcccccCCccccccccccccccchHHHHHHhCCCCCCCChhhhcCcCCHHHHHHHHHHHHhccCCchHH
Confidence            99999999998554332221 111133344578899999998888889999999   49999999999999999999995


Q ss_pred             hhhhhcCCHHHHHHHHHHHH
Q 002048          949 QIISENLEPANQSALLQLCS  968 (975)
Q Consensus       949 ~~~~~~l~~~~~~~l~~~~~  968 (975)
                      +.+.++|++++|+.|+++++
T Consensus       939 ~l~~~~l~~~~~~~l~~~~~  958 (960)
T 1wa5_C          939 NTILPQLTQENQVKLNQLLV  958 (960)
T ss_dssp             HHHGGGSCHHHHHHHHHHHC
T ss_pred             HHHhccCCHHHHHHHHHHHc
Confidence            44488999999999999986
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 975
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 0.0
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 4e-36
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 2e-35
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 2e-34
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 3e-27
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  558 bits (1438), Expect = 0.0
 Identities = 266/980 (27%), Positives = 481/980 (49%), Gaps = 42/980 (4%)

Query: 8   LQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNF 67
           L+ +++    ++       + +ER+L ++  +  +GL +L ++A   +    R A A+ F
Sbjct: 4   LETVAKFLAESVIA--STAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFF 61

Query: 68  KNHLRFRWAPASDRNSGPTLAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNH 127
           KN ++ +W   +  +  P          + IK  IV LM++    +Q Q+ EA+  + + 
Sbjct: 62  KNFIKRKWVDENGNHLLP------ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADS 115

Query: 128 DFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSIFKKFRYQFKTNDLLLDLKYCL 187
           DFP  WPTLL +L + L     +++ V+  G+L  A+SIFK++R  F++++L L++K  L
Sbjct: 116 DFPDRWPTLLSDLASRL----SNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVL 171

Query: 188 DNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFEDH 247
           D F AP L +       I +   +    A+L +LF+   +  +++Y  N Q++PEFFED+
Sbjct: 172 DVFTAPFLNLLKTVDEQITA---NENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDN 228

Query: 248 MREWMTEFKKYLTTNYPALESTSDG--LGLVDGLRAAVCENISLYMKMNEEEFQGYLNDF 305
           ++  M  F KYL+ + P LE   +     ++  +++++ E + LY    E+ F   +N+F
Sbjct: 229 IQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEF 288

Query: 306 ALAVWTLLGNVSQSSSRDSLAVTAIKFLTN-VSTSVHHTLFAGEGVIPQICQNIVIPNVR 364
               W LL ++S     D L   ++ FLT       +  +F  E  +  I + I++PNV 
Sbjct: 289 IQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVT 348

Query: 365 LRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKGIATHYRQHVMETVSVQIQNLL 424
           LR+ED ELFE + +E+IRRD+EGSD DTRRR   + LK +       V       ++  +
Sbjct: 349 LREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFV 408

Query: 425 TSFAANPVANWKDKDCAIYLVVSLATKKAGSTSIST---DLVDVQSFFTSVIVPELQSPD 481
             + ++P  NWK KD  IYL  +LA     + +  +   +L++V  FFT  I P+L S +
Sbjct: 409 DQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN 468

Query: 482 VNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVK 541
           +    +L+  A+K+   FR Q+ K    +  P L  FL  +  VV++YAA  IEK+L ++
Sbjct: 469 IP-HIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIR 527

Query: 542 DEGGKSR--YNSADITPYLSVLMTSLFNAFKFPESE-----ENQYIMKCIMRVLGVA-EI 593
           +        ++  DI+    +L+ +L        S      EN+++M+ I RVL  + + 
Sbjct: 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS 587

Query: 594 SNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVLVRRACQRDPSLISAFEASILP 653
              +    ++    I+  + KNP +P F HY FES+  ++          +     S++P
Sbjct: 588 IQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ---RQNLPLLVDSMMP 644

Query: 654 SLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALVR 713
           +   +   D+ EF+PY FQ++A ++E     +  +   +   LL+P+ W+   N+PA+ R
Sbjct: 645 TFLTVFSEDIQEFIPYVFQIIAFVVE-QSATIPESIKPLAQPLLAPNVWELKGNIPAVTR 703

Query: 714 LLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVP 773
           LL++F++           L  VLGIF  L+ S + +  GF +L  I+  ++   +  ++ 
Sbjct: 704 LLKSFIKTDSSIFPD---LVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIK 760

Query: 774 HIWGVLFTRLQNKRTVKFVKSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIP 833
            I  +L  RLQN +T ++VK L +F  L   K G + L++ ++ VQ G+   I     I 
Sbjct: 761 QIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIIT 820

Query: 834 NLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGKMLDSIVTLL-SRPEEERVEEE 892
            L  I   ++ K+  +    ++                  ++SI+    S+       + 
Sbjct: 821 TLPTIGNLLDRKIALIGVLNMVINGQFFQSKYP-TLISSTMNSIIETASSQSIANLKNDY 879

Query: 893 PEMPDITENMGYTTAFVNLYNAGKKEEDPLKDI---KDPKEFLVASLARISAVSPGRYPQ 949
            ++ ++ E   + + F  L +  +K  DPL +I      + ++  +L + +A+S   +  
Sbjct: 880 VDLDNLEEISTFGSHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLN 939

Query: 950 IISENLEPANQSALLQLCSA 969
            I   L   NQ  L QL   
Sbjct: 940 TILPQLTQENQVKLNQLLVG 959
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query975
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.95
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.5
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.4
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.36
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.32
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.3
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.14
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.09
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 98.77
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.62
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.47
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 97.99
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.1
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.98
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 96.92
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.87
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.8
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.13
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 95.33
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 93.76
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 93.04
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 91.55
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 90.69
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 87.42
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 87.08
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 85.3
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-94  Score=918.30  Aligned_cols=938  Identities=29%  Similarity=0.523  Sum_probs=813.1

Q ss_pred             hHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCcChHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 002048            7 TLQHLSQCFLHTLSPSPEPRRAAERSLAEMADRPNYGLAVLRLVAEQTIDEQIRHAAAVNFKNHLRFRWAPASDRNSGPT   86 (975)
Q Consensus         7 ~~~~l~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~~~~~~~   86 (975)
                      |.++|.++|+++++|+  +||+||++|++++++|||...|++|+.+++.+.++||+|+|+|||+|++||+...+.     
T Consensus         3 d~~~l~~ll~~s~~~~--~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~-----   75 (959)
T d1wa5c_           3 DLETVAKFLAESVIAS--TAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGN-----   75 (959)
T ss_dssp             HHHHHHHHHHHTTSGG--GHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSC-----
T ss_pred             cHHHHHHHHHHCCChH--HHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc-----
Confidence            5899999999988776  899999999999999999999999999999999999999999999999999865543     


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCCCCCCchHHHHHHHhcccccCCChhHHhHHHHHHHHH
Q 002048           87 LAPILDAEKDQIKSLIVGLMLTSTPRIQSQLSEALVVVGNHDFPKHWPTLLPELIANLKDAAQSNNYVSINGILGTANSI  166 (975)
Q Consensus        87 ~~~i~~e~K~~Ir~~ll~~l~~~~~~ir~qla~~i~~Ia~~D~P~~Wp~Ll~~l~~~l~~~~~~~d~~~~~~~L~~l~~i  166 (975)
                       +.+++++|+.||+.+++++.++++.||+++|.+|+.||++|||++||+|++.+.+.++++    |+...+++|.+++.+
T Consensus        76 -~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~----~~~~~~~~L~~l~~i  150 (959)
T d1wa5c_          76 -HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND----DMVTNKGVLTVAHSI  150 (959)
T ss_dssp             -BSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS----CTTHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCC----CHHHHHHHHHHHHHH
Confidence             369999999999999999999999999999999999999999999999999999999988    999999999999999


Q ss_pred             HHhhhccccchhhhhhHHHHHHHhhHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHhhhcccCCCchHHHH
Q 002048          167 FKKFRYQFKTNDLLLDLKYCLDNFAAPLLEIFLKTAALIDSTVSSGGPVATLKLLFESQRLCCRIFYSLNFQELPEFFED  246 (975)
Q Consensus       167 ~k~~~~~~~~~~~~~~l~~il~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~~~lp~~~~~  246 (975)
                      +|+|++..++++.+.+++.+++.+.+.+..++....+.+.+.   ..+........++++.++|++++++..+.|+++++
T Consensus       151 ~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (959)
T d1wa5c_         151 FKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITAN---ENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED  227 (959)
T ss_dssp             HGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---C--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             HHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            999998777888888889999999999999888877655443   33334455667888999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccCCcccCCC--CcCchHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHhccCCCCcchH
Q 002048          247 HMREWMTEFKKYLTTNYPALESTS--DGLGLVDGLRAAVCENISLYMKMNEEEFQGYLNDFALAVWTLLGNVSQSSSRDS  324 (975)
Q Consensus       247 ~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~k~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~  324 (975)
                      ++..|++.|..+++...+.....+  +....+.++|+++++++..+.++|++.+.++++.|++.+|+.+......+.++.
T Consensus       228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  307 (959)
T d1wa5c_         228 NIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDI  307 (959)
T ss_dssp             THHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHH
T ss_pred             HHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence            999999999999998776443222  256678899999999999999999999999999999999999998887788899


Q ss_pred             HHHHHHHHHHhh-chhhhhhcccCCCchhhHHHHhhcccCCCChhhHHHHhhCHHHHHhhcCCCCcchhhhHHHHHHHHH
Q 002048          325 LAVTAIKFLTNV-STSVHHTLFAGEGVIPQICQNIVIPNVRLRDEDEELFEMNYVEFIRRDMEGSDVDTRRRIACELLKG  403 (975)
Q Consensus       325 ~~~~~l~fl~~~-~~~~~~~~~~~~~~l~~l~~~li~~~l~l~~~d~e~we~dp~efv~~~~d~~d~~s~R~~A~~ll~~  403 (975)
                      ++..+++||..+ +.+.++..+.+.+++..++..+++|+++++++|.+.|++||++|++++.+.++.+++|.||.+++..
T Consensus       308 ~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~  387 (959)
T d1wa5c_         308 LVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKE  387 (959)
T ss_dssp             HHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHH
Confidence            999999999999 7676667765567899999999999999999999999999999999998888899999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHhhh---cCCCccccCcccHHHHHHHhcccccCCC
Q 002048          404 IATHYRQHVMETVSVQIQNLLTSFAANPVANWKDKDCAIYLVVSLATKK---AGSTSISTDLVDVQSFFTSVIVPELQSP  480 (975)
Q Consensus       404 L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~w~~keaal~~ig~ia~~~---~~g~~~~~~~~~~~~~l~~~v~p~l~~~  480 (975)
                      +++++++.+.+.++.++.+.++++.+.++.+|+.+|+++.++|+++...   ..+........++.+++.+++.|++...
T Consensus       388 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~  467 (959)
T d1wa5c_         388 LKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSN  467 (959)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCS
T ss_pred             HHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccC
Confidence            9999999999999999999999887777789999999999999998654   2233334456889999999999999875


Q ss_pred             CCCCcchhHhhHHHHHHHhhccCCHhHHHhHHHHHHHhhcCCCchHHHHHHHHHHHHHccccCCC--ccccccccccchH
Q 002048          481 DVNAFPMLKAGALKFFTMFRIQIPKIHAFQFFPDLVRFLGAESNVVHSYAASCIEKLLQVKDEGG--KSRYNSADITPYL  558 (975)
Q Consensus       481 ~~~~~~~Lr~ra~~~l~~f~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~Aa~aL~~~~~~~~~~~--~~~~~~~~l~p~l  558 (975)
                      +. .++++|+|++|++++|++...++.+.++++.++++|++++.+||.+||.|+++++.......  ...+..+.+.||+
T Consensus       468 ~~-~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l  546 (959)
T d1wa5c_         468 NI-PHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST  546 (959)
T ss_dssp             SC-SCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred             CC-chHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhH
Confidence            43 58999999999999999999889999999999999999999999999999999998764322  2345678899999


Q ss_pred             HHHHHHHHHhcCCCCch-----hhHHHHHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Q 002048          559 SVLMTSLFNAFKFPESE-----ENQYIMKCIMRVLG-VAEISNEVAAPCISGLTSILNEVCKNPKSPIFNHYLFESVAVL  632 (975)
Q Consensus       559 ~~il~~L~~ll~~~~~~-----~~~~l~~~l~~vi~-~~~~i~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l  632 (975)
                      +++++.|+..+.+....     +++++++++++++. +++.+.||+..+++.|.+.++...++++++.+.+.++++++.+
T Consensus       547 ~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l  626 (959)
T d1wa5c_         547 EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI  626 (959)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            99999999998665432     35679999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCcchHHHHHHhhHHHHHHHHhcccccchHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCccccccCCCccchH
Q 002048          633 VRRACQRDPSLISAFEASILPSLQIILQNDVTEFLPYAFQLLAQLIELNRPPLSSNYMQIFNLLLSPDSWKRSSNVPALV  712 (975)
Q Consensus       633 i~~~~~~~~~~~~~l~~~l~P~i~~il~~~~~~~~~~~l~ll~~ll~~~~~~~~~~~~~lf~~l~~~~l~~~~~~l~~~~  712 (975)
                      ++..   +|+.+..+++.++|++..+++++..++.++++++|+.++++++. +++.++++|++++++.+|...++++.+.
T Consensus       627 ~~~~---~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~  702 (959)
T d1wa5c_         627 LNYT---QRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSAT-IPESIKPLAQPLLAPNVWELKGNIPAVT  702 (959)
T ss_dssp             HHTS---CGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSS-CCTTTGGGHHHHTSGGGGCCTTTHHHHH
T ss_pred             HHhc---CchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHhhHHHHHHhhhHHHHH
Confidence            9874   57888999999999999999999999999999999999999886 9999999999999988888889999999


Q ss_pred             HHHHHHHccCccchhccCchHHHHHHHHHhhcCCCCcchHHHHHHHHHHhcchhhHhhhHHHHHHHHHHHhhcCchhhHH
Q 002048          713 RLLQAFLQKVPREIAQEGKLREVLGIFNMLVLSPSTDEQGFYVLNTIVESLEYGVIAQFVPHIWGVLFTRLQNKRTVKFV  792 (975)
Q Consensus       713 ~~L~~~i~~~~~~~~~~~~~~~il~i~~~ll~~~~~~~~a~~ll~~ii~~~~~~~~~~~l~~il~~~l~~L~~~~~~~~~  792 (975)
                      +++++|+.++++.+.+   ...+++++.+++++...+..|+.+++.+++++|.+.+.++++.++..++++++..++..+.
T Consensus       703 ~~l~~~~~~~~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~  779 (959)
T d1wa5c_         703 RLLKSFIKTDSSIFPD---LVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYV  779 (959)
T ss_dssp             HHHHHHHHHHGGGCSC---SHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHH
T ss_pred             HHHHHHHHhCHHhhcc---hHHHHHHHHHHHCCCcchHHHHHHHHHHHHHCchhhhHhHHHHHHHHHHHHHHhcccHHHH
Confidence            9999999999998864   5788999999998877788899999999999987778999999999999999999989999


Q ss_pred             HHHHHHHHHHHHHhChHHHHHHHhhhcchhHHHHHHHHhhcCcccccchhhHHHHHHHHHHHhhcCcccccHHHhhhHHH
Q 002048          793 KSLLIFMSLFLVKHGPENLVNTMNAVQSGIILVILEQIWIPNLKLITGAIEWKLTAVASTRLICESPVLLDAAAVRHWGK  872 (975)
Q Consensus       793 ~~~i~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~w~~~~~~~~~~~~~K~~~lal~~Ll~~~~~~l~~~~~~~~~~  872 (975)
                      +.++++++.+++.++|+.+++.+++++++.+.+++.+.|+++++++.+.++||++++|+++|++.++...+ .....|..
T Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~l~~ll~~~~~~~~-~~~~~~~~  858 (959)
T d1wa5c_         780 KKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQS-KYPTLISS  858 (959)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHH-HCGGGHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHhchhhHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHhcCChhhhh-HHHHHHHH
Confidence            99999999999889999999999999988888889899999999999999999999999999987765433 33467888


Q ss_pred             HHHHHHHHhcCCCcc-ccCCCCCCcccccccCcccccccccccCCCCCCCCCCCC---ChHHHHHHHHHHhhhhCCCCch
Q 002048          873 MLDSIVTLLSRPEEE-RVEEEPEMPDITENMGYTTAFVNLYNAGKKEEDPLKDIK---DPKEFLVASLARISAVSPGRYP  948 (975)
Q Consensus       873 il~~~~~ll~~~~~~-~~~~~~d~~d~~~~~~~~~~~~~l~~~~~~~~Dp~~~~~---d~~~~~~~~l~~~~~~~~~~~~  948 (975)
                      ++..+++.+...... ...++.+.++.+++.+|..++.++......++||++++.   |+++|++++++++++.+|+.+-
T Consensus       859 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~  938 (959)
T d1wa5c_         859 TMNSIIETASSQSIANLKNDYVDLDNLEEISTFGSHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFL  938 (959)
T ss_dssp             HHHHHHHHHHSCSTTCSCCSCC-----CCCCCTTCCCCCCGGGCCCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHhhccccccccccchhccccccccccchhhhHHHHhhhcccCCcccCCcchhHHHHHHHHHHHHHHhCCHHHH
Confidence            888888887663322 111111112233446677788888877766778876542   6899999999999999997632


Q ss_pred             hhhhhcCCHHHHHHHHHHHH
Q 002048          949 QIISENLEPANQSALLQLCS  968 (975)
Q Consensus       949 ~~~~~~l~~~~~~~l~~~~~  968 (975)
                      +.+.++|+++.++.|+++++
T Consensus       939 ~~~~~~l~~~~~~~L~~~l~  958 (959)
T d1wa5c_         939 NTILPQLTQENQVKLNQLLV  958 (959)
T ss_dssp             HHHGGGSCHHHHHHHHHHHC
T ss_pred             HHHHHhCCHHHHHHHHHHhc
Confidence            67889999999999999875
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure