Citrus Sinensis ID: 002059

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970---
MDRSEINGPNSSTISPDTDASARSPPPPNYNSRAVQEALEHLASIDLCELRYEAKVEHCRATRDLRSCGRYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPKKRNSIRLRLYDECVEAGLISKRCEEGYHDFEDAENQITADVQRLYSLFDTALENNLISLICHYVRDVCMDEAAVSSDPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEVMKTRLSLLLKFQMKLRDISSVIEVLASSFKDDLSAQVHDLHHFQESILKTKQHLEIMMWCAKQQFLENVRSRHASFTSWHSLVRQRKSAATERAWYDPVNYSAESTKQDGSLFIEDALANLEIEQEFTQGRGEELDITSLHKDDEGSSFVRSKIEGVSGCYPFENLRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQDFISKNPVSEEVLSRMQSQIHWRTKFIDTSIELLPEVQRQLLKNGKLPLNALNSSEEVEIPEKSDLHGSQELKSITLLIPTTADSSLLLPTSNLTPANSSVFESPTGPGRSIKSPHFEVGHYGPSILHERLFMNKEGSTYDFGVSKEFKVDGFSTPGVCQSSPMNQTPLKGRNFSSRTLSNSHRRDKVSDKISPVPEQNGFLSQHLNTIHHYSHRMTTNPASTPVSNRGLHNDLAGDLHSNLSSKRVHSDREDGLRYMISSEDPMDVSLSNGKKGFAVEDRQAIAGGGLRWRSDETSDEEEKQSPESAMGVASYTTPRRGIRRSRFARR
cccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccHHHcccccccccccccccccccccccccccc
cccHHccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHcccEEEEEEcccccccHHHHHHccccccccccccccccccEEHHHHHHHHHHcccccccccHHcccHccccccHHHHHHHHHHHHHHHHHcccHHHEEHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccHcHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccHccccccccEEHEccccccccEEEcccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHcHHHcccccHHHHHHHHHHccccHHHHHHHHHcccccccccccHHHHHHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEcccccccccccccccEEccccccccccccEccccccccccccccccccccccccccccccccccccccccHHccccccccccccEEcEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHccccccccccccccccccccccccccEccccccccccccccHHHHccc
mdrseingpnsstispdtdasarsppppnynsRAVQEALEHLASIDLCELRYEAKVEHCRatrdlrscgRYVQYVLNscghaslcaecrqrcdfcpicripvpkkrnsirlRLYDECVEAGLISKrceegyhdfedaENQITADVQRLYSLFDTALENNLISLICHYVRdvcmdeaavssdPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEVMKTRLSLLLKFQMKLRDISSVIEVLASSFkddlsaqvHDLHHFQESILKTKQHLEIMMWCAKQQFLENVRSRHASFTSWHSLVRQRKSAAterawydpvnysaestkqdgsLFIEDALANLEIEQEftqgrgeelditslhkddegssfvrskiegvsgcypfenLRAAVDILFLHGSSDLVLAKQAIFLYYLFdrhwtmpdenwrhIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHllpeisgptthpKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKklkfgtigetfddlqGGFKTWEQWLEVLVTEICCLCIRRNLVDRMielpwntdeeKYLHKCLldsatddpsttvGSLLVVFYIQRYRYAEAYQVNLKLQSVEQdfisknpvSEEVLSRMQSQIHWRTKFIDTSIELLPEVQRQLLkngklplnalnsseeveipeksdlhgsqelksitllipttadsslllptsnltpanssvfesptgpgrsiksphfevghygpsilHERLFmnkegstydfgvskefkvdgfstpgvcqsspmnqtplkgrnfssrtlsnshrrdkvsdkispvpeqngflsqhLNTIHHyshrmttnpastpvsnrglhndlagdlhsnlsskrvhsdredglrymissedpmdvslsngkkgfavedRQAIaggglrwrsdetsdeeekqspesamgvasyttprrgirrsrfarr
mdrseingpnsstispdtdasarspPPPNYNSRAVQEALEHLASIDLCELRYEAKVEHCratrdlrsCGRYVQYVLNSCGHASLCAECRQRCDFCpicripvpkkrnsirlrLYDECVEAGLISKRCEEGYHDFEDAENQITADVQRLYSLFDTALENNLISLICHYVRDVCMDEAAVSSDPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEVMKTRLSLLLKFQMKLRDISSVIEVLASSFKDDLSAQVHDLHHFQESILKTKQHLEIMMWCAKQQFLENVRSRHASFTSWHSLVRQRKSaaterawydpvnysaestkqdGSLFIEDALANLEIEQEFTQGRGEELDITslhkddegssFVRSKIEGVSGCYPFENLRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDsatddpsttVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQDFISKNPVSEEVLSRMQSQIHWRTKFIDTSIELLPEVQRQLLKNGKLPLNALNSSEEVEipeksdlhgsqELKSITLLIPTTADSSLLLPTSNLTPANSSVFESPTGPGRSIKSPHFEVGHYGPSILHERLFMNKEGSTYDFGVSKEFKVDGFSTpgvcqsspmnqtplkgrnfssrtlsnshrrdkvsdkispvPEQNGFLSQHLNTIHHYSHRMTTNPASTPVSNRGLHNDLAGdlhsnlsskrvhsdREDGLRYmissedpmdvsLSNGKKGFAVEDRQAiaggglrwrsdetsdeeekqspesamgvasyttprrgirrsrfarr
MDRSEINGPNSSTISPDTDASARSPPPPNYNSRAVQEALEHLASIDLCELRYEAKVEHCRATRDLRSCGRYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPKKRNSIRLRLYDECVEAGLISKRCEEGYHDFEDAENQITADVQRLYSLFDTALENNLISLICHYVRDVCMDEAAVSSDPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEVMKTRLSLLLKFQMKLRDISSVIEVLASSFKDDLSAQVHDLHHFQESILKTKQHLEIMMWCAKQQFLENVRSRHASFTSWHSLVRQRKSAATERAWYDPVNYSAESTKQDGSLFIEDALANLEIEQEFTQGRGEELDITSLHKDDEGSSFVRSKIEGVSGCYPFENLRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQDFISKNPVSEEVLSRMQSQIHWRTKFIDTSIELLPEVQRQLLKNGKLPLNALNSSEEVEIPEKSDLHGSQELKSITLLIPTTADsslllptsnltpANSSVFESPTGPGRSIKSPHFEVGHYGPSILHERLFMNKEGSTYDFGVSKEFKVDGFSTPGVCQSSPMNQTPLKGRNFSSRTLSNSHRRDKVSDKISPVPEQNGFLSQHLNTIHHYSHRMTTNPASTPVSNRGLHNDLAGDLHSNLSSKRVHSDREDGLRYMISSEDPMDVSLSNGKKGFAVEDRQAIAGGGLRWRSDETSDEEEKQSPESAMGVASYTTPrrgirrsrfarr
*************************************ALEHLASIDLCELRYEAKVEHCRATRDLRSCGRYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPKKRNSIRLRLYDECVEAGLISKRCEEGYHDFEDAENQITADVQRLYSLFDTALENNLISLICHYVRDVCMDEAAVSSDPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEVMKTRLSLLLKFQMKLRDISSVIEVLASSFKDDLSAQVHDLHHFQESILKTKQHLEIMMWCAKQQFLENVRSRHASFTSWHSLVRQRKSAATERAWYDPVNYS*******GSLFIEDALANLEIEQ***********************FVRSKIEGVSGCYPFENLRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQDFISKNPVSEEVLSRMQSQIHWRTKFIDTSIELLPEVQRQLLK*******************************ITLLIP************************************FEVGHYGPSILHERLFMNKEGSTYDFGVSKEFKVDGF********************************************************************************************************************************************************************************
************************************EALEHLASIDLCELRYEAKVEHCRATRDLRSCGRYVQYVLNSCGHASLCAECRQRCDFCPICRIPVP*KRNSIRLRLYDECVEAGLISKRCE****************VQRLYSLFDTALENNLISLICHYVRDVCMDEAAVSSDPVVAFLLDEVVVKDWCKRAFKNIIAELKLI*********TRLSLLLKFQMKLRDISSVIEVLASSFK****AQVHDLHHFQESILKTKQHLEIMMWCAKQQFLENVRSRHA**TSW**LVRQ*************************SLFIEDALANLEIE***********DITSLHKDDEGSSF***KIE**SGCYPFENLRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGR**********EAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSAT*DPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQS****************************FIDTSIELLPE*****************************************************************************************************************************************************************************************************************************************************************************************************
*****************************YNSRAVQEALEHLASIDLCELRYEAKVEHCRATRDLRSCGRYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPKKRNSIRLRLYDECVEAGLISKRCEEGYHDFEDAENQITADVQRLYSLFDTALENNLISLICHYVRDVCMDEAAVSSDPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEVMKTRLSLLLKFQMKLRDISSVIEVLASSFKDDLSAQVHDLHHFQESILKTKQHLEIMMWCAKQQFLENVRSRHASFTSWH**********TERAWYDPVNYSAESTKQDGSLFIEDALANLEIEQEFTQGRGEELDITSLHKDDEGSSFVRSKIEGVSGCYPFENLRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQDFISKNPVSEEVLSRMQSQIHWRTKFIDTSIELLPEVQRQLLKNGKLPLNALNSSE**********HGSQELKSITLLIPTTADSSLLLPTSNLTPANSSVFESPTGPGRSIKSPHFEVGHYGPSILHERLFMNKEGSTYDFGVSKEFKVDGFSTPGVCQSSPMNQTPLKGRNFSSR**************ISPVPEQNGFLSQHLNTIHHYSHRMTTNPASTPVSNRGLHNDLAGDLHSNL*********EDGLRYMISSEDPMDVSLSNGKKGFAVEDRQAIAGGGLRW*************************PRRGIRRSRFARR
**************************PPNYNSRAVQEALEHLASIDLCELRYEAKVEHCRATRDLRSCGRYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPKKRNSIRLRLYDECVEAGLISKRCEEGYHDFEDAENQITADVQRLYSLFDTALENNLISLICHYVRDVCMDEAAVSSDPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEVMKTRLSLLLKFQMKLRDISSVIEVLASSFKDDLSAQVHDLHHFQESILKTKQHLEIMMWCAKQQFLENVRSRHASFTSWHSLVRQRKSAATERAWYDPVNYSAESTKQDGSLFIEDALANLEIEQE***GRGEELDITSLHKDDEGSSFVRSKIEGVSGCYPFENLRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQDFISKNPVSEEVLSRMQSQIHWRTKFIDTSIELLPEVQRQLLKNGKLP*******EEVEIP*KSDLHGSQELKSITLLIPTTADSSLLLPTSNLTPANSSVFESP**PGRSIKSPHFEVGHYGPSILHERLFMNKEGSTYDFGVSKEFKVDGFSTPGVCQ****************************SDKISPVPEQNGFLSQHLNTIHHYSHRMTTNPASTPVSNRGLHNDLAGDLHSNL*********EDGLRYMISSEDPMDVSLSNGKKGFAVEDRQAIAGGGL****************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDRSEINGPNSSTISPDTDASARSPPPPNYNSRAVQEALEHLASIDLCELRYEAKVEHCRATRDLRSCGRYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPKKRNSIRLRLYDECVEAGLISKRCEEGYHDFEDAENQITADVQRLYSLFDTALENNLISLICHYVRDVCMDEAAVSSDPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEVMKTRLSLLLKFQMKLRDISSVIEVLASSFKDDLSAQVHDLHHFQESILKTKQHLEIMMWCAKQQFLENVRSRHASFTSWHSLVRQRKSAATERAWYDPVNYSAESTKQDGSLFIEDALANLEIEQEFTQGRGEELDITSLHKDDEGSSFVRSKIEGVSGCYPFENLRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPDENWRHIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISGPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQDFISKNPVSEEVLSRMQSQIHWRTKFIDTSIELLPEVQRQLLKNGKLPLNALNSSEEVEIPEKSDLHGSQELKSITLLIPTTADSSLLLPTSNLTPANSSVFESPTGPGRSIKSPHFEVGHYGPSILHERLFMNKEGSTYDFGVSKEFKVDGFSTPGVCQSSPMNQTPLKGRNFSSRTLSNSHRRDKVSDKISPVPEQNGFLSQHLNTIHHYSHRMTTNPASTPVSNRGLHNDLAGDLHSNLSSKRVHSDREDGLRYMISSEDPMDVSLSNGKKGFAVEDRQAIAGGGLRWRSDETSDEEEKQSPESAMGVASYTTPRRGIRRSRFARR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query973 2.2.26 [Sep-21-2011]
Q84JU6927 E3 ubiquitin-protein liga yes no 0.931 0.977 0.527 0.0
Q8WYP5 2266 Protein ELYS OS=Homo sapi yes no 0.355 0.152 0.223 1e-08
Q5U249 2408 Protein ELYS OS=Xenopus l N/A no 0.269 0.108 0.231 2e-08
Q8CJF7 2243 Protein ELYS OS=Mus muscu yes no 0.492 0.213 0.190 7e-06
>sp|Q84JU6|HOS1_ARATH E3 ubiquitin-protein ligase HOS1 OS=Arabidopsis thaliana GN=HOS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/965 (52%), Positives = 654/965 (67%), Gaps = 59/965 (6%)

Query: 1   MDRSEINGPNSSTISPDTDASARSPPPPNYNSRAVQEALEHLASIDLCELRYEAKVEHCR 60
           MD  EING  S+        S   P  PNY+S+ VQEAL+HLASI+L EL  EAKVE CR
Sbjct: 1   MDTREINGFASAA------RSISLPTQPNYSSKPVQEALKHLASINLRELCNEAKVERCR 54

Query: 61  ATRDLRSCGRYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPKKRNSIRLRLYDECVEA 120
           ATRDL SCGR+V YVLN CGHASLC EC QRCD CPICR  +PK  + +RLRLY ECVEA
Sbjct: 55  ATRDLASCGRFVNYVLNPCGHASLCTECCQRCDVCPICRSTLPKFGDRLRLRLYYECVEA 114

Query: 121 GLISKRCEEGYHDFEDAENQITADVQRLYSLFDTALENNLISLICHYVRDVCMDEAAVSS 180
           GLIS+  EE   D ++ E+Q+ ADV RLYSLFD A+ NNLIS++CHY+ +VCMDE AVSS
Sbjct: 115 GLISRTHEEASQDSDEDEHQLAADVHRLYSLFDVAMNNNLISVVCHYITNVCMDETAVSS 174

Query: 181 DPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEVMKTRLSLLLKFQMKLRDISSVI 240
           DPV+AFLLDEVVVKDW KR F++ +AEL+ IYNLE + M+  L  LL+   ++  I SV+
Sbjct: 175 DPVIAFLLDEVVVKDWVKRTFRSTLAELQEIYNLETKEMQAWLDKLLRCSKQVAGICSVL 234

Query: 241 EVLASSFKDDLSAQVHDLHHFQESILKTKQHLEIMMWCAKQQFLENVRSRHASFTSWHSL 300
           EV+ S+FK  +S Q+ D+   +E+I KTKQHL+IM+WC +  FL++VRSR+++FTSW++L
Sbjct: 235 EVMESAFKGSVSPQLQDVQTLRENIGKTKQHLDIMVWCIRHGFLDDVRSRYSNFTSWNAL 294

Query: 301 VRQRKSAATERAWYDPVNYSAESTKQDGSLFIEDALANLEIEQEFTQGRGEELDITSLHK 360
           V +RKS A +RAW D V+ S++ + Q  SLFIEDAL NLE E E++Q  G +L++  L K
Sbjct: 295 VGERKSNAVKRAWPDAVDQSSDCSVQSASLFIEDALENLEREPEYSQEIGADLEVGRLQK 354

Query: 361 DDEGSSFVRSKIEGVSGCYPFENLRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPD 420
           D    SF+RSKIEG SG YPFENLR A D+LFLHG SDLV+AKQAIFLYYLFDRHWT P+
Sbjct: 355 DKR--SFLRSKIEGTSGSYPFENLRTAADMLFLHGGSDLVVAKQAIFLYYLFDRHWTTPE 412

Query: 421 ENWRHIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISGPTTHPKIAQV 480
           + W+H +DDFAATF ITRHSLLES  FYLLDD ++EALQEAC +LPEI GP T+PK+AQV
Sbjct: 413 KYWKHTIDDFAATFGITRHSLLESFVFYLLDDHSEEALQEACRILPEICGPETYPKVAQV 472

Query: 481 LLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVRE 540
           LLER+NPE ALMVLRWSGRDG S LVS+ EAVTA+R+RVEC LL+EAFTYQR LC KV+E
Sbjct: 473 LLERDNPETALMVLRWSGRDGVSELVSIGEAVTALRVRVECGLLSEAFTYQRTLCLKVKE 532

Query: 541 KKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLH 600
             LK G +    DDL     +W +W+E+LV E CCL IRRNLVDR+IELPWN DEEKYLH
Sbjct: 533 NNLKNGAVKHASDDLD--IWSWTEWMEILVNEFCCLSIRRNLVDRIIELPWNPDEEKYLH 590

Query: 601 KCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQDFISKNPVSEEVLSRM 660
           +CLLDSATDDPS+ VGSLLVVFY+QRYRY +AYQV+L+LQ +E+ F+S N + EEV+ RM
Sbjct: 591 RCLLDSATDDPSSAVGSLLVVFYLQRYRYIQAYQVDLRLQKIEEAFVSDNQIGEEVMFRM 650

Query: 661 QSQIHWRTKFIDTSIELLPEVQRQLLKNGKLPLNALNSSEEVEIPEKSDLHGSQELKSIT 720
           +SQ HWR + +D +I++LP +Q+Q +++G+         +  E  +KSDL  + ++  IT
Sbjct: 651 RSQSHWRKELVDRAIDILPVIQQQQVRSGQFS----EMEDASEGAKKSDLPDAPDM--IT 704

Query: 721 LLIPTTADSSLLLPTSNLTPANSSVFE--SPTGPGRSIKSPHFEVGHYGPSILHERLFMN 778
             +P    +S+ L ++N   A   V    SP  PG  I       G+    + H RLF N
Sbjct: 705 SSVPFATTNSVFLQSANNARAREPVANNGSPFQPGHMI-------GNASHDLSHGRLFTN 757

Query: 779 -KEGSTYDF-GVSKEFKVDGFSTPGVCQSSPMNQTPLKGRNFSSRTLSNSHRRDKVSDKI 836
              G   +   V+K  K    S            TP K  N   R   NS  + K +++ 
Sbjct: 758 ANRGQKSEVRSVTKNLKFGEMS------------TPFKDLN---RARGNSQLQGKRTEES 802

Query: 837 SPVPEQNGFLSQHLNTIHHYSHRMTTNPASTPVSNRGLHNDLAGDLH---SNLSSKRVHS 893
           SP    + ++  ++++   Y  R+T N    PV+ +   N L G      S     R+  
Sbjct: 803 SPEVNVDRYIENNMSS--PYLRRITAN---NPVTVKSSSNHLNGSSQKPESTFFGTRMQP 857

Query: 894 DREDGLRYMISSEDPMDVSLS---NGKKGFAVEDRQAIAGGGLRWRSDETSDEEEKQSPE 950
           D+++     +  +DPMD+S S   N     A E R     GGLRWRSDETSD+E++ +  
Sbjct: 858 DKDN----FVDLDDPMDMSSSLKDNNNNVLATESRN--NSGGLRWRSDETSDDEDELTSF 911

Query: 951 SAMGV 955
            +M V
Sbjct: 912 GSMPV 916
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of the transcription factor ICE1. Acts as a negative regulator of cold signaling pathways.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q8WYP5|ELYS_HUMAN Protein ELYS OS=Homo sapiens GN=AHCTF1 PE=1 SV=3 Back     alignment and function description
>sp|Q5U249|ELYS_XENLA Protein ELYS OS=Xenopus laevis GN=ahctf1 PE=1 SV=1 Back     alignment and function description
>sp|Q8CJF7|ELYS_MOUSE Protein ELYS OS=Mus musculus GN=Ahctf1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query973
268044007973 HOS1 [Citrus trifoliata] 1.0 1.0 0.960 0.0
359496309976 PREDICTED: E3 ubiquitin-protein ligase H 0.994 0.991 0.635 0.0
255581299968 conserved hypothetical protein [Ricinus 0.986 0.991 0.629 0.0
224074189880 predicted protein [Populus trichocarpa] 0.877 0.970 0.646 0.0
224138668904 predicted protein [Populus trichocarpa] 0.916 0.986 0.589 0.0
3574821131044 E3 ubiquitin-protein ligase HOS1 [Medica 0.946 0.882 0.569 0.0
356495589961 PREDICTED: E3 ubiquitin-protein ligase H 0.981 0.993 0.565 0.0
356541030966 PREDICTED: E3 ubiquitin-protein ligase H 0.971 0.978 0.565 0.0
449469428966 PREDICTED: E3 ubiquitin-protein ligase H 0.928 0.934 0.582 0.0
296085696817 unnamed protein product [Vitis vinifera] 0.835 0.995 0.628 0.0
>gi|268044007|gb|ACY92092.1| HOS1 [Citrus trifoliata] Back     alignment and taxonomy information
 Score = 1918 bits (4969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 935/973 (96%), Positives = 949/973 (97%)

Query: 1   MDRSEINGPNSSTISPDTDASARSPPPPNYNSRAVQEALEHLASIDLCELRYEAKVEHCR 60
           MDRSEINGPN S+IS DT  SARSPPPPNYNSRAVQEALEHLASIDLCELRYEAKVEHCR
Sbjct: 1   MDRSEINGPNLSSISSDTGVSARSPPPPNYNSRAVQEALEHLASIDLCELRYEAKVEHCR 60

Query: 61  ATRDLRSCGRYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPKKRNSIRLRLYDECVEA 120
           ATRDLRSCGRYVQYVLNSCGHASLCAEC QRCDFCPICRIPVPK RNSI LRLYDECVEA
Sbjct: 61  ATRDLRSCGRYVQYVLNSCGHASLCAECSQRCDFCPICRIPVPKNRNSITLRLYDECVEA 120

Query: 121 GLISKRCEEGYHDFEDAENQITADVQRLYSLFDTALENNLISLICHYVRDVCMDEAAVSS 180
           GLI KRCEEGYHDFEDAENQITADVQRLYSLFDTALENNLISLICHYVRDVCMDEAAVSS
Sbjct: 121 GLILKRCEEGYHDFEDAENQITADVQRLYSLFDTALENNLISLICHYVRDVCMDEAAVSS 180

Query: 181 DPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEVMKTRLSLLLKFQMKLRDISSVI 240
           DPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEV+KTRLSLLLKFQMKLRDISSVI
Sbjct: 181 DPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEVIKTRLSLLLKFQMKLRDISSVI 240

Query: 241 EVLASSFKDDLSAQVHDLHHFQESILKTKQHLEIMMWCAKQQFLENVRSRHASFTSWHSL 300
           EVLASSFKDDLSAQVHDLHHFQESILKTKQHLEIMMWCAK QFLENVRSRHAS TSWHSL
Sbjct: 241 EVLASSFKDDLSAQVHDLHHFQESILKTKQHLEIMMWCAKHQFLENVRSRHASSTSWHSL 300

Query: 301 VRQRKSAATERAWYDPVNYSAESTKQDGSLFIEDALANLEIEQEFTQGRGEELDITSLHK 360
           VRQRKSAATERAWYDPVNYSAESTKQDGSLFIEDALANLEIEQEFTQGRGE+LDITSLHK
Sbjct: 301 VRQRKSAATERAWYDPVNYSAESTKQDGSLFIEDALANLEIEQEFTQGRGEKLDITSLHK 360

Query: 361 DDEGSSFVRSKIEGVSGCYPFENLRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPD 420
           DDEGSSFVRSKIEGVSGCYPFENLRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPD
Sbjct: 361 DDEGSSFVRSKIEGVSGCYPFENLRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPD 420

Query: 421 ENWRHIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISGPTTHPKIAQV 480
           ENWRHIVDDFAATFSITRHSLLESLTFYLLDDQ DEALQEACHLLPEISGPTTHPKIAQV
Sbjct: 421 ENWRHIVDDFAATFSITRHSLLESLTFYLLDDQTDEALQEACHLLPEISGPTTHPKIAQV 480

Query: 481 LLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVRE 540
           LLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVR+RVECALLTEAFTYQRMLCTKVRE
Sbjct: 481 LLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRVRVECALLTEAFTYQRMLCTKVRE 540

Query: 541 KKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLH 600
           KKLKFGTIGETFDDL+GGFKTWEQWLEVLVTEICCLCIRR+LVDRMIELPWN+DEEKYLH
Sbjct: 541 KKLKFGTIGETFDDLKGGFKTWEQWLEVLVTEICCLCIRRDLVDRMIELPWNSDEEKYLH 600

Query: 601 KCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQDFISKNPVSEEVLSRM 660
           KCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQDFISKNPVSEEVLSRM
Sbjct: 601 KCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQDFISKNPVSEEVLSRM 660

Query: 661 QSQIHWRTKFIDTSIELLPEVQRQLLKNGKLPLNALNSSEEVEIPEKSDLHGSQELKSIT 720
           QSQIHWRTKFIDTSIELLPEVQRQL+KNGKLPLNA+NSSEEVEIPEKSDLHGSQE KSIT
Sbjct: 661 QSQIHWRTKFIDTSIELLPEVQRQLVKNGKLPLNAVNSSEEVEIPEKSDLHGSQEPKSIT 720

Query: 721 LLIPTTADSSLLLPTSNLTPANSSVFESPTGPGRSIKSPHFEVGHYGPSILHERLFMNKE 780
           LLIPTTADSS LLPTSN+TPANSSVFESPTGPGRSIKSPHFEVGHYGPSILHERLFMNKE
Sbjct: 721 LLIPTTADSSHLLPTSNVTPANSSVFESPTGPGRSIKSPHFEVGHYGPSILHERLFMNKE 780

Query: 781 GSTYDFGVSKEFKVDGFSTPGVCQSSPMNQTPLKGRNFSSRTLSNSHRRDKVSDKISPVP 840
           GSTYDFGVSKEF+VDGFSTPGVCQS  MNQTPLKGRNFSS+TLSNSHRRDKVSDKISP P
Sbjct: 781 GSTYDFGVSKEFEVDGFSTPGVCQSGLMNQTPLKGRNFSSKTLSNSHRRDKVSDKISPEP 840

Query: 841 EQNGFLSQHLNTIHHYSHRMTTNPASTPVSNRGLHNDLAGDLHSNLSSKRVHSDREDGLR 900
           EQNGFLSQHLNTIHHYS RMTTNPASTPVSNRG+HNDLAGDL SNLSSKRVHSDREDG  
Sbjct: 841 EQNGFLSQHLNTIHHYSQRMTTNPASTPVSNRGVHNDLAGDLRSNLSSKRVHSDREDGPW 900

Query: 901 YMISSEDPMDVSLSNGKKGFAVEDRQAIAGGGLRWRSDETSDEEEKQSPESAMGVASYTT 960
           YMISSEDPMDVS SNGK G AVEDRQA AGGGLRWRSDETSDEEE+QSPESAMGVASYTT
Sbjct: 901 YMISSEDPMDVSWSNGKNGLAVEDRQANAGGGLRWRSDETSDEEEEQSPESAMGVASYTT 960

Query: 961 PRRGIRRSRFARR 973
           PRRGIRRSRFARR
Sbjct: 961 PRRGIRRSRFARR 973

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359496309|ref|XP_002264751.2| PREDICTED: E3 ubiquitin-protein ligase HOS1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255581299|ref|XP_002531460.1| conserved hypothetical protein [Ricinus communis] gi|223528914|gb|EEF30910.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224074189|ref|XP_002304293.1| predicted protein [Populus trichocarpa] gi|222841725|gb|EEE79272.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224138668|ref|XP_002326660.1| predicted protein [Populus trichocarpa] gi|222833982|gb|EEE72459.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357482113|ref|XP_003611342.1| E3 ubiquitin-protein ligase HOS1 [Medicago truncatula] gi|355512677|gb|AES94300.1| E3 ubiquitin-protein ligase HOS1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356495589|ref|XP_003516657.1| PREDICTED: E3 ubiquitin-protein ligase HOS1-like [Glycine max] Back     alignment and taxonomy information
>gi|356541030|ref|XP_003538986.1| PREDICTED: E3 ubiquitin-protein ligase HOS1-like [Glycine max] Back     alignment and taxonomy information
>gi|449469428|ref|XP_004152422.1| PREDICTED: E3 ubiquitin-protein ligase HOS1-like [Cucumis sativus] gi|449488752|ref|XP_004158161.1| PREDICTED: E3 ubiquitin-protein ligase HOS1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296085696|emb|CBI29495.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query973
TAIR|locus:2063917927 HOS1 "HIGH EXPRESSION OF OSMOT 0.817 0.857 0.563 2.2e-253
UNIPROTKB|Q8WYP5 2266 AHCTF1 "Protein ELYS" [Homo sa 0.164 0.070 0.251 3.8e-06
RGD|1561291 2240 Ahctf1 "AT hook containing tra 0.130 0.056 0.256 6.9e-06
ZFIN|ZDB-GENE-070521-2 2527 ahctf1 "AT hook containing tra 0.175 0.067 0.269 3.1e-05
MGI|MGI:1915033 2243 Ahctf1 "AT hook containing tra 0.144 0.062 0.270 4.2e-05
TAIR|locus:2063917 HOS1 "HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2318 (821.0 bits), Expect = 2.2e-253, Sum P(2) = 2.2e-253
 Identities = 461/818 (56%), Positives = 583/818 (71%)

Query:     1 MDRSEINGPNSSTISPDTDASARSPPPPNYNSRAVQEALEHLASIDLCELRYEAKVEHCR 60
             MD  EING  S+        S   P  PNY+S+ VQEAL+HLASI+L EL  EAKVE CR
Sbjct:     1 MDTREINGFASAA------RSISLPTQPNYSSKPVQEALKHLASINLRELCNEAKVERCR 54

Query:    61 ATRDLRSCGRYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPKKRNSIRLRLYDECVEA 120
             ATRDL SCGR+V YVLN CGHASLC EC QRCD CPICR  +PK  + +RLRLY ECVEA
Sbjct:    55 ATRDLASCGRFVNYVLNPCGHASLCTECCQRCDVCPICRSTLPKFGDRLRLRLYYECVEA 114

Query:   121 GLISKRCEEGYHDFEDAENQITADVQRLYSLFDTALENNLISLICHYVRDVCMDEAAVSS 180
             GLIS+  EE   D ++ E+Q+ ADV RLYSLFD A+ NNLIS++CHY+ +VCMDE AVSS
Sbjct:   115 GLISRTHEEASQDSDEDEHQLAADVHRLYSLFDVAMNNNLISVVCHYITNVCMDETAVSS 174

Query:   181 DPVVAFLLDEVVVKDWCKRAFKNIIAELKLIYNLEVEVMKTRLSLLLKFQMKLRDISSVI 240
             DPV+AFLLDEVVVKDW KR F++ +AEL+ IYNLE + M+  L  LL+   ++  I SV+
Sbjct:   175 DPVIAFLLDEVVVKDWVKRTFRSTLAELQEIYNLETKEMQAWLDKLLRCSKQVAGICSVL 234

Query:   241 EVLASSFKDDLSAQVHDLHHFQESILKTKQHLEIMMWCAKQQFLENVRSRHASFTSWHSL 300
             EV+ S+FK  +S Q+ D+   +E+I KTKQHL+IM+WC +  FL++VRSR+++FTSW++L
Sbjct:   235 EVMESAFKGSVSPQLQDVQTLRENIGKTKQHLDIMVWCIRHGFLDDVRSRYSNFTSWNAL 294

Query:   301 VRQRKSAATERAWYDPVNYSAESTKQDGSLFIEDALANLEIEQEFTQGRGEELDITSLHK 360
             V +RKS A +RAW D V+ S++ + Q  SLFIEDAL NLE E E++Q  G +L++  L K
Sbjct:   295 VGERKSNAVKRAWPDAVDQSSDCSVQSASLFIEDALENLEREPEYSQEIGADLEVGRLQK 354

Query:   361 DDEGSSFVRSKIEGVSGCYPFENLRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPD 420
             D    SF+RSKIEG SG YPFENLR A D+LFLHG SDLV+AKQAIFLYYLFDRHWT P+
Sbjct:   355 DKR--SFLRSKIEGTSGSYPFENLRTAADMLFLHGGSDLVVAKQAIFLYYLFDRHWTTPE 412

Query:   421 ENWRHIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISGPTTHPKIAQV 480
             + W+H +DDFAATF ITRHSLLES  FYLLDD ++EALQEAC +LPEI GP T+PK+AQV
Sbjct:   413 KYWKHTIDDFAATFGITRHSLLESFVFYLLDDHSEEALQEACRILPEICGPETYPKVAQV 472

Query:   481 LLERENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVRE 540
             LLER+NPE ALMVLRWSGRDG S LVS+ EAVTA+R+RVEC LL+EAFTYQR LC KV+E
Sbjct:   473 LLERDNPETALMVLRWSGRDGVSELVSIGEAVTALRVRVECGLLSEAFTYQRTLCLKVKE 532

Query:   541 KKLKFGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLH 600
               LK G +    DDL     +W +W+E+LV E CCL IRRNLVDR+IELPWN DEEKYLH
Sbjct:   533 NNLKNGAVKHASDDLD--IWSWTEWMEILVNEFCCLSIRRNLVDRIIELPWNPDEEKYLH 590

Query:   601 KCLLDSATDDPSTTVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQDFISKNPVSEEVLSRM 660
             +CLLDSATDDPS+ VGSLLVVFY+QRYRY +AYQV+L+LQ +E+ F+S N + EEV+ RM
Sbjct:   591 RCLLDSATDDPSSAVGSLLVVFYLQRYRYIQAYQVDLRLQKIEEAFVSDNQIGEEVMFRM 650

Query:   661 QSQIHWRTKFIDTSIELLPEVQRQLLKNGKLPLNALNSSEEVEIPEKSDLHGSQELKSIT 720
             +SQ HWR + +D +I++LP +Q+Q +++G+         +  E  +KSDL  + ++  IT
Sbjct:   651 RSQSHWRKELVDRAIDILPVIQQQQVRSGQFS----EMEDASEGAKKSDLPDAPDM--IT 704

Query:   721 LLIPTTADXXXXXXXXXXXXANSSVFESPTGPGRSIKSPHFEVGHYGPSILHERLFMN-K 779
               +P                AN++    P     S   P   +G+    + H RLF N  
Sbjct:   705 SSVP-----FATTNSVFLQSANNARAREPVANNGSPFQPGHMIGNASHDLSHGRLFTNAN 759

Query:   780 EGSTYDF-GVSKEFKVDGFSTPGVCQSSPMNQTPLKGR 816
              G   +   V+K  K    STP    +     + L+G+
Sbjct:   760 RGQKSEVRSVTKNLKFGEMSTPFKDLNRARGNSQLQGK 797
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP
GO:0009409 "response to cold" evidence=IMP
GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA
GO:0016567 "protein ubiquitination" evidence=RCA;IMP;IDA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
UNIPROTKB|Q8WYP5 AHCTF1 "Protein ELYS" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1561291 Ahctf1 "AT hook containing transcription factor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070521-2 ahctf1 "AT hook containing transcription factor 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1915033 Ahctf1 "AT hook containing transcription factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84JU6HOS1_ARATH6, ., 3, ., 2, ., -0.52740.93110.9773yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query973
pfam13934225 pfam13934, ELYS, Nuclear pore complex assembly 6e-51
pfam1392049 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI 2e-04
>gnl|CDD|222462 pfam13934, ELYS, Nuclear pore complex assembly Back     alignment and domain information 
 Score =  178 bits (454), Expect = 6e-51
 Identities = 66/245 (26%), Positives = 96/245 (39%), Gaps = 42/245 (17%)

Query: 369 RSKIEGVSGCYPFEN---LRAAVDILFLHGSSDLVLAKQAIFLYYLFDRHWTMPDENWRH 425
           R  I+G +  YP ++   LRA +D++ L  S  L   K A+  Y L D   T        
Sbjct: 11  RLGIDGATKLYPPKSNNDLRALLDLILLSDSDLL--HKHALIYYLLLDLDQTRT-----E 63

Query: 426 IVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISGPTTHP-KIAQVLLER 484
           + +DFA  F +    +L    F+LLD       +EA  LL   S   T P KI QVLL R
Sbjct: 64  LSEDFARAFGLPEKYVLFVRGFWLLDHGD---FEEAVELLTHPSLIPTFPDKILQVLLRR 120

Query: 485 ENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLK 544
                AL   R          +S SEA+T   + +    +TEAF + R    ++R     
Sbjct: 121 GADSLALAYYRTVKPP-----LSSSEALTLYFVLLANTSITEAFHFARKYSDELRR---- 171

Query: 545 FGTIGETFDDLQGGFKTWEQWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLL 604
                             EQ +E ++  I            +I LP + +EE+ L   L 
Sbjct: 172 ---------------PLLEQLVEHVLEAIPRA----GRAKELISLPLSEEEEELLEDLLR 212

Query: 605 DSATD 609
              + 
Sbjct: 213 GCKSR 217

ELYS (embryonic large molecule derived from yolk sac) is conserved from fungi such Aspergillus nidulans and Schizosaccharomyces pombe to human. It is important for the assembly of the nuclear pore complex. Length = 225
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 973
PF13934226 ELYS: Nuclear pore complex assembly 100.0
KOG1100207 consensus Predicted E3 ubiquitin ligase [Posttrans 97.89
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 97.88
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 97.68
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 97.6
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 96.61
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 96.38
PF1463444 zf-RING_5: zinc-RING finger domain 94.81
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 91.74
PHA02926242 zinc finger-like protein; Provisional 91.53
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 90.17
PHA02929238 N1R/p28-like protein; Provisional 87.34
cd0016245 RING RING-finger (Really Interesting New Gene) dom 85.8
KOG4739233 consensus Uncharacterized protein involved in syna 83.63
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 82.89
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 82.78
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 82.46
>PF13934 ELYS: Nuclear pore complex assembly Back     alignment and domain information 
Probab=100.00  E-value=2.2e-48  Score=406.30  Aligned_cols=222  Identities=36%  Similarity=0.524  Sum_probs=199.5

Q ss_pred             CcccHHHHHHhhchhhhhhccCCccchhcccccCCCCCcccccccCCCcccCCCch---HHHHHHHHhccCCchhhhhhH
Q 002059          328 GSLFIEDALANLEIEQEFTQGRGEELDITSLHKDDEGSSFVRSKIEGVSGCYPFEN---LRAAVDILFLHGSSDLVLAKQ  404 (973)
Q Consensus       328 ~~LFID~LL~~Lgi~~~~~~~~ge~~el~~Lw~~~~~~~~f~~~~e~~~g~YPP~S---LraLld~ill~~ssd~~~aKq  404 (973)
                      |.||||++|+++|++.                               .++.|||+|   |++|++.|+++++++  ++||
T Consensus         1 ~~LfiD~lL~~~gi~~-------------------------------~~~~YPP~s~~~L~~Ll~~i~~~~~~~--~~K~   47 (226)
T PF13934_consen    1 GCLFIDRLLSRLGIEG-------------------------------STGLYPPKSDNDLRALLDLILSSNVSL--LKKH   47 (226)
T ss_pred             CcchHHHHHHHcCCCC-------------------------------CCCCCCccCHHHHHHHHHHHhcCCcCH--HHhH
Confidence            5699999999887752                               467999999   999999999999987  7999


Q ss_pred             HHHHHHhhccCCcCCCcchhhHHHHHHhHcCCChhhHHHHhHhhhccCCCchHHHHHhhhCCCCCC-CCChHHHHHHHHh
Q 002059          405 AIFLYYLFDRHWTMPDENWRHIVDDFAATFSITRHSLLESLTFYLLDDQADEALQEACHLLPEISG-PTTHPKIAQVLLE  483 (973)
Q Consensus       405 AI~lYlLLD~~~~~p~~~~~~lle~Fa~tF~Ip~~~~l~iqgfWlLDdh~d~aleeAl~LLP~is~-pw~h~kIlqvLl~  483 (973)
                      +||||||+|+++..+    ++++++||++|+||++++++|+|||+|| |+++  ++||++|+.++. ||+|++|+++|++
T Consensus        48 ~l~~YlLlD~~~~~~----~~~~~~Fa~~f~ip~~~~~~~~g~W~LD-~~~~--~~A~~~L~~ps~~~~~~~~Il~~L~~  120 (226)
T PF13934_consen   48 SLFYYLLLDLDDTRP----SELAESFARAFGIPPKYIKFIQGFWLLD-HGDF--EEALELLSHPSLIPWFPDKILQALLR  120 (226)
T ss_pred             HHHHHHHHhcCcccc----ccHHHHHHHHhCCCHHHHHHHHHHHHhC-hHhH--HHHHHHhCCCCCCcccHHHHHHHHHH
Confidence            999999999998866    2678999999999999999999999999 9888  999999988766 8999999999999


Q ss_pred             CCCchhHHHHHHHhcCCCCCCccCHHHHHHHHHHHHhcCChhHHHHHhhhhchHHHhhhhccCCCCCcccccccCcchhH
Q 002059          484 RENPEAALMVLRWSGRDGGSLLVSLSEAVTAVRIRVECALLTEAFTYQRMLCTKVREKKLKFGTIGETFDDLQGGFKTWE  563 (973)
Q Consensus       484 rg~~d~AL~ylr~~g~d~~P~l~SlsEA~l~l~VlLan~lItEAF~~qR~~~~~v~e~~~~~~~~~~~~~dL~g~~~~w~  563 (973)
                      +|+++.||+|+|+++    |++.+ .++++.++++|+|++|+|||+|+|+++++.+..                      
T Consensus       121 ~~~~~lAL~y~~~~~----p~l~s-~~~~~~~~~~La~~~v~EAf~~~R~~~~~~~~~----------------------  173 (226)
T PF13934_consen  121 RGDPKLALRYLRAVG----PPLSS-PEALTLYFVALANGLVTEAFSFQRSYPDELRRR----------------------  173 (226)
T ss_pred             CCChhHHHHHHHhcC----CCCCC-HHHHHHHHHHHHcCCHHHHHHHHHhCchhhhHH----------------------
Confidence            999999999999996    66766 477788888899999999999999999976532                      


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHhhcCCCCchhHHHHHHHHcccCCCCCCCCcchhhHH
Q 002059          564 QWLEVLVTEICCLCIRRNLVDRMIELPWNTDEEKYLHKCLLDSATDDPSTTVGSLLVV  621 (973)
Q Consensus       564 ~~~E~Ll~~~f~~C~~~~~ld~LL~LPLd~eEEk~L~k~L~~~~~~~~~~~~~sLLlV  621 (973)
                       ..|.||+++++.|.+.+++++|++|||+++||+||++||.+++++.+    +++++|
T Consensus       174 -l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~~l~~~L~~~~~~~~----~~~ll~  226 (226)
T PF13934_consen  174 -LFEQLLEHCLEECARSGRLDELLSLPLDEEEEQWLEKYLRESPGRQA----QDLLLM  226 (226)
T ss_pred             -HHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHHHHHHHHccCCCccc----cCeeeC
Confidence             26688888888888899999999999999999999999999998774    777765

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query973
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-19
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
2ea5_A68 Cell growth regulator with ring finger domain prot 2e-07
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 4e-07
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 6e-07
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 2e-05
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 2e-04
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 91.1 bits (225), Expect = 9e-19
 Identities = 101/636 (15%), Positives = 197/636 (30%), Gaps = 187/636 (29%)

Query: 230 QMKLRDISSVIEVLASSFKDDLSAQVHDLHHFQESILKTKQHLEI------------MMW 277
           Q + +DI   + V   +F D+      D+    +SIL  ++   I            + W
Sbjct: 15  QYQYKDI---LSVFEDAFVDNF--DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 278 CAK-------QQFLENVRSRHASF--TSWHSLVRQRKSAATERAWYDPVNYSAESTKQDG 328
                     Q+F+E V   +  F  +   +  RQ  S  T    Y       +    D 
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP-SMMTRM--Y---IEQRDRLYNDN 123

Query: 329 SLFIEDALANLEIEQEFTQGRGEELDITSLHKDDEGSSFVRSKIEGVSGC---------- 378
            +F +    N+   Q + + R       +L +     + +   I+GV G           
Sbjct: 124 QVFAKY---NVSRLQPYLKLR------QALLELRPAKNVL---IDGVLGSGKTWVALDVC 171

Query: 379 --YPFENLRAAVDILFLH----GSSDLVLAKQAIFLYYLFDRHWT-MPD--ENWRHIVDD 429
             Y  +  +    I +L+     S + VL      L Y  D +WT   D   N +  +  
Sbjct: 172 LSYKVQ-CKMDFKIFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 430 FAATFSIT------RHSLLESLTFYLLDDQADEALQEA----CHLL----------PEIS 469
             A            + LL      +L +  +     A    C +L             +
Sbjct: 230 IQAELRRLLKSKPYENCLL------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 470 GPTTHPKIAQVLLERENPEAALMVLRWSGRDGGSL-----LVS-LSEAVTAVRIRVECAL 523
             TTH  +    +     E   ++L++       L       +    ++ A  IR   A 
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 524 LTEAFTYQRMLCTKVRE------KKLKFGTIGETFDDLQGGF--------KT----WEQW 565
                 ++ + C K+          L+     + FD L   F              W   
Sbjct: 344 WD---NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDV 399

Query: 566 LEVLVTEICCLCIRRNLVDR------------MIELPWNTDEEKYLHKCLLDSATDDPST 613
           ++  V  +     + +LV++             +EL    + E  LH+ ++D        
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-------- 451

Query: 614 TVGSLLVVFYIQRYRYAEAYQVNLKLQSVEQD-----FIS---KNPVSEEVLSRMQSQIH 665
                        Y   + +  +  L     D      I    KN    E ++       
Sbjct: 452 ------------HYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMTLF----- 493

Query: 666 WRTKFIDTS-IELLPEVQRQLLKNGKLPLNA----LNSSEEVEIPEK----SDLHGSQEL 716
            R  F+D   +E       Q +++     NA    LN+ ++++  +     +D    + +
Sbjct: 494 -RMVFLDFRFLE-------QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545

Query: 717 KSITLLIPTTADSSLLLPTSN-----LTPANSSVFE 747
            +I   +P   ++ +    ++     L   + ++FE
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68 Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79 Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64 Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query973
2ea5_A68 Cell growth regulator with ring finger domain prot 98.12
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 97.97
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 97.9
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 97.87
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 97.81
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 97.69
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 97.28
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 96.5
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 96.05
2ysl_A73 Tripartite motif-containing protein 31; ring-type 96.0
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 95.95
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 95.94
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 95.83
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 95.79
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 95.64
2ecm_A55 Ring finger and CHY zinc finger domain- containing 95.43
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 95.18
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 95.11
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 94.95
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 94.94
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 94.91
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 94.88
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 94.75
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 94.7
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 94.63
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 94.62
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 94.55
1z6u_A150 NP95-like ring finger protein isoform B; structura 94.53
2ecw_A85 Tripartite motif-containing protein 30; metal bind 94.4
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 94.29
2ect_A78 Ring finger protein 126; metal binding protein, st 94.2
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 94.16
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 94.02
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 94.01
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 93.65
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 93.45
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 93.43
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 93.43
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 93.32
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 93.26
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 92.92
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 92.91
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 92.67
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 91.62
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 91.32
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 91.18
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 90.76
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 90.65
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 89.37
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 89.33
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 88.17
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 87.94
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 87.13
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 86.92
2ysj_A63 Tripartite motif-containing protein 31; ring-type 86.41
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 86.33
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 85.89
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 84.29
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 84.01
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 83.13
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 82.99
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 80.61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=98.12  E-value=5.8e-07  Score=77.31  Aligned_cols=35  Identities=37%  Similarity=0.808  Sum_probs=32.8

Q ss_pred             ccchhhcccCCchhhhhHhhhhccCCCcccccccC
Q 002059           70 RYVQYVLNSCGHASLCAECRQRCDFCPICRIPVPK  104 (973)
Q Consensus        70 ~~~~~vl~~c~h~~lc~~c~~~~~~cpicr~~Ipk  104 (973)
                      +..++||+||||.++|..|+++.+.||+||.+|.+
T Consensus        24 ~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~   58 (68)
T 2ea5_A           24 GTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE   58 (68)
T ss_dssp             SCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred             CCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence            46789999999999999999999999999999976
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 973
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 0.004
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 70  RYVQYVLNSCGHASLCAECRQRCDF-CPICRIPVP 103
                 L  C H +LC+ C +     CPIC+ P P
Sbjct: 15  EAKCPKLLPCLH-TLCSGCLEASGMQCPICQAPWP 48

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query973
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 96.57
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 95.97
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 95.77
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 95.04
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 94.41
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 94.38
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 93.83
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 92.09
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 91.13
d2c2la280 STIP1 homology and U box-containing protein 1, STU 90.95
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 89.96
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 89.91
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 85.08
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00031  Score=56.74  Aligned_cols=36  Identities=33%  Similarity=0.695  Sum_probs=30.2

Q ss_pred             cchhhcccCCchhhhhHhhhhcc-CCCcccccccCCcc
Q 002059           71 YVQYVLNSCGHASLCAECRQRCD-FCPICRIPVPKKRN  107 (973)
Q Consensus        71 ~~~~vl~~c~h~~lc~~c~~~~~-~cpicr~~Ipk~G~  107 (973)
                      ..+.|++|||| ..|..|.++.. .||+||.+|+-+.+
T Consensus        16 ~~~p~~lpCgH-~fC~~Ci~~~~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_          16 AKCPKLLPCLH-TLCSGCLEASGMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CBCCSCSTTSC-CSBTTTCSSSSSSCSSCCSSSSCCSS
T ss_pred             cCCCEEecCCC-HHhHHHHHcCCCcCcCCCCcccCCCC
Confidence            45778999999 68999998885 89999999986543
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure