Citrus Sinensis ID: 002070

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970---
MRGGSAVEQSQPMVVDEVVDKEKKKKNRRSNRRSNKNSSVNEIRGEATQTKNGYKTKNLTSSMNCSSTKQQDLDLHPLSEQDPTGASTVTFSSMPTMHINEEESAESGSTQSQLLLATDLCGSIISRSCPEPIANDSSCWAYTNKDDNPSHQSEARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKMKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLFSCLILYLTSFSTIHV
ccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccEEEEEEEEccccccccEEEEccccEEEEEEccccccccccccEEEEEEEEHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEEEEccccccEEEEEEEEcccccccccccccccccccccccccccEEEEEEcccccccEEEEcccccHHHHHccccccccccccEEEEEEcccccccccccEEEEEccccccccHHHHHHHHHHcccccccccHHHHHccccccccccHHHHccccccccccEEEEccccccccccEEEEEEcccccEEEEEEEcccccccccccHHHHHHHHccccEEcccccccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEEEEEEccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHcccccccccHHHHHccccccHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEc
ccccccEEccccEEEEEEEccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccEEEEEEEEcccccccEEEEcccccccEEEcccHHHHHHccccEEEEEEccHHHHHHccccccccccccccccHHHHccccccHHHHHHHHHHHHHccccEEEEEccccccccccccEEEEEEEcccccEEEEccccccccccEEccHHHHHHHccccEEEEEEccccccccccEEEEEEEEEcccccEEEEEEEcccccccHHHHHccccccccccccccccEEEEEcccccccEEEEEcHcccccEEEccccccccccccEEEEEEEEccccccccccEEEEEEccccccccHHHHHHHHccccHHHccHHHHHHHccccccccHHHHHcccHHccccEEEEccccccccccEEEEEEcccccEEEEEEEEEEEEEEccccHHHHHHHHHcccEEccccEcccccHHHHcccccccccccEEEEEEEEEEcccccEEccEEEHHHEHcccHccHHHHHHHHccccccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccEEEEEEcccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHcccEEcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHcccEEEEcccEcccccHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEcEEEEEEccccEEEEEcccccccEEEEcccccccccccHHHHHHHccccEccEEEEcccEEEEEc
mrggsaveqsqpmvvDEVVDKekkkknrrsnrrsnknssVNEIRGEatqtkngyktknltssmncsstkqqdldlhplseqdptgastvtfssmptmhineeesaesgstqSQLLLATDLCgsiisrscpepiandsscwaytnkddnpshqsearckifaphwSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKMkgfsnnssivedsnlpteangmhsdickgkskVDVSYEYSNctllsekgihhdddssseaYNQEMIEregynyinghhpstsdstekvsssqqnDGMNAIERLSAMIssyptkrptgrvvsiiersprrdgivGFLNVNqwfnykggsrkdakknrsslsvpdreyiqltpthpkypkMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDewneespfpqahVLHVfgrggevepqINAILYEnaiccsgfspeslsclpcvpwevpqeellsrkdLRNFCiftidpstatdlddaLSIERLSDGISRVGVHIADVSyfvlpgtaldieAQVRSTSVYMLQrkipmlpvllseevgslnpgvdrLAFSIFWDlnsagdvvdrwiGRTVIRSCCKLSYEHAQDiidgkfdvessntlgegwpqlygqfewSDVVRSIKSLYEVSKILkdkrftdgalrlenskpvflfdeygtpydsvlsgreDLNFLFEEFMLLANKTAAEVIARafpdsallrrhpapnmrKLREFEAFCskhglqldtsssgqfHQSLEQAREKLKDDYVLFDILINyatrpmqlasyfcsgdfkddtdwghyalafpvythftsplrrypdlVVHRTLNAALEAEKLYWKHRrmlpknnhregvrgrfltgifydkdaaeSLEGREALSVAALKYGVPCADILVNVAthcndrklACRNVKDACVKLYMWILLKKKEVLFSCLILYLTSFSTIHV
mrggsaveqsqpmvvdevvdkekkkknrrsnrrsnknssvneirgeatqtkngyktknltssmncsSTKQQDLDLHPLSEQDPTGASTVTFSSMPTMHINEEESAESGSTQSQLLLATDLCGSIISRSCPEPIANDSSCWAYTNKDDNPSHQSEARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAaqnravegdFVLIKVDRLSLWAKMKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLsekgihhdddsSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMissyptkrptgrvvsiiersprrdgivgflnvnqwfnykggsrkdakknrsslsvpdreyiqltpthpkypkmvVLVKDLPDSIKKRleegdatiEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTidpstatdlddALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKIlkdkrftdgalrlenskpvflfdeYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARafpdsallrrhpAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKhrrmlpknnhregvrgrFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLFSCLILYLTSFSTIHV
MRGGSAVEQSQPMvvdevvdkekkkknrrsnrrsnknssvneIRGEATQTKNGYKTKNLTSSMNCSSTKQQDLDLHPLSEQDPTGASTVTFSSMPTMHINEEESAESGSTQSQLLLATDLCGSIISRSCPEPIANDSSCWAYTNKDDNPSHQSEARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKMKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPstsdstekvsssQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLFSCLILYLTSFSTIHV
*****************************************************************************************************************LLLATDLCGSIISRSCPEPIANDSSCWAYT************RCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKMKGF**********************ICKGKSKVDVSYEYSNCTLLS***********************************************************************RVVSIIERSPRRDGIVGFLNVNQWFNYK********************YIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLR*********LREFEAFCS************************LKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLFSCLILYLTSFST***
******************************************************************************************************************************************************************HWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKMKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLS****************QEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIER**************GRVVSIIERSPRRDGIVGFLNVNQWFNYKG**************VPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRM***************TGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACR**KDACVKLYMWILLKKKEVLFSCLILYLTSFSTIHV
***********PMVVDEVVD********************NEIRGEATQTKNGYKTKNLT**********QDLDLHPLSEQDPTGASTVTFSSMPTMHIN***********SQLLLATDLCGSIISRSCPEPIANDSSCWAYTN*********EARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKMKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHH****************DGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKG***************PDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLFSCLILYLTSFSTIHV
**********QPMVVDE*VDK************************************************************************************************************PEP*************************KIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKMK**********************SDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQ********************VPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFD*****TLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLFSCLILYLTSFSTIHV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRGGSAVEQSQPMVVDEVVDKEKKKKNRRSNRRSNKNSSVNEIRGEATQTKNGYKTKNLTSSMNCSSTKQQDLDLHPLSEQDPTGASTVTFSSMPTMHINEEESAESGSTQSQLLLATDLCGSIISRSCPEPIANDSSCWAYTNKDDNPSHQSEARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKMKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLFSCLILYLTSFSTIHV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query973 2.2.26 [Sep-21-2011]
Q8IYB7 885 DIS3-like exonuclease 2 O yes no 0.721 0.793 0.355 1e-124
Q8CI75870 DIS3-like exonuclease 2 O yes no 0.725 0.811 0.347 1e-123
Q0V9R3834 DIS3-like exonuclease 2 O yes no 0.660 0.770 0.372 1e-119
O14040927 Dis3-like exonuclease C2C yes no 0.538 0.565 0.399 1e-101
Q09568848 Uncharacterized ribonucle yes no 0.463 0.531 0.375 7e-81
Q9CSH3958 Exosome complex exonuclea no no 0.470 0.478 0.361 1e-78
A0JN80 1053 DIS3-like exonuclease 1 O no no 0.497 0.459 0.356 2e-78
Q9Y2L1958 Exosome complex exonuclea no no 0.471 0.479 0.365 6e-78
Q8TF46 1054 DIS3-like exonuclease 1 O no no 0.497 0.459 0.352 4e-75
Q5U2P0 1054 DIS3-like exonuclease 1 O no no 0.493 0.455 0.351 2e-74
>sp|Q8IYB7|DI3L2_HUMAN DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4 Back     alignment and function desciption
 Score =  447 bits (1149), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 288/809 (35%), Positives = 407/809 (50%), Gaps = 107/809 (13%)

Query: 159 IFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEG 218
           IF  + S E V+E L++G   + + R+N     EA+        D+ I G+ A+NRA+ G
Sbjct: 49  IFETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNG 108

Query: 219 DFVLIKVDRLSLWAKMKGFSNN--SSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNC 276
           D V++K+     W  +K  SN+  +    +S++P E  G H      KS  D      + 
Sbjct: 109 DLVVVKLLPEEHWKVVKPESNDKETEAAYESDIPEELCGHHLPQQSLKSYND------SP 162

Query: 277 TLLSEKGIHHDDDSSSEAYNQEMIEREGYNYI----------NGHHPSTSDSTEKVSSSQ 326
            ++ E      D        Q ++  +G   +          +G  P T D T  +S   
Sbjct: 163 DVIVEAQFDGSDSEDGHGITQNVL-VDGVKKLSVCVSEKGREDGDAPVTKDETTCISQDT 221

Query: 327 QNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDA 386
           +     +++R             + +VV I+E+   R    GFL +             A
Sbjct: 222 RALSEKSLQR-------------SAKVVYILEKKHSR-AATGFLKLL------------A 255

Query: 387 KKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDE 446
            KN        R+Y   +P+  + P++ V +KD P     R ++   T    L   RI +
Sbjct: 256 DKNSELF----RKYALFSPSDHRVPRIYVPLKDCPQDFVARPKDYANT----LFICRIVD 307

Query: 447 WNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLP-CVPWEVPQEE 505
           W E+  F    +    G+ GE+EP+   IL E  +  S FS E L CLP  +PW +P EE
Sbjct: 308 WKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFSDFSSEVLECLPQGLPWTIPPEE 367

Query: 506 LLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 565
              R+DLR  CIFTIDPSTA DLDDALS + L+DG  +VGVHIADVSYFV  G+ LD  A
Sbjct: 368 FSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFKVGVHIADVSYFVPEGSDLDKVA 427

Query: 566 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIR 625
             R+TSVY++Q+ +PMLP LL EE+ SLNP  D+L FS+ W L   G ++D W GRT+IR
Sbjct: 428 AERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLTFSVIWTLTPEGKILDEWFGRTIIR 487

Query: 626 SCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKR 685
           SC KLSYEHAQ +I+   +   +  L    P +  +    +V +++ +L+ ++K L+ +R
Sbjct: 488 SCTKLSYEHAQSMIESPTEKIPAKEL----PPISPEHSSEEVHQAVLNLHGIAKQLRQQR 543

Query: 686 FTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPD 744
           F DGALRL+  K  F  D E G P    +    + N L EEFMLLAN   A  I RAFP+
Sbjct: 544 FVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEFMLLANMAVAHKIHRAFPE 603

Query: 745 SALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN 804
            ALLRRHP P  R L +   FC + GL +D SS+G  ++SL Q     K      ++L N
Sbjct: 604 QALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFGDDKYSLARKEVLTN 663

Query: 805 YATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 864
             +RPMQ+A YFCSG  +D   + HYAL  P+YTHFTSP+RR+ D++VHR L AAL    
Sbjct: 664 MCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAAL---- 719

Query: 865 LYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNV 924
                           G R R         D A                     D L   
Sbjct: 720 ----------------GYRERL--------DMA--------------------PDTLQKQ 735

Query: 925 ATHCNDRKLACRNVKDACVKLYMWILLKK 953
           A HCNDR++A + V++    L+  +L+K+
Sbjct: 736 ADHCNDRRMASKRVQELSTSLFFAVLVKE 764
Ribonuclease that plays a critical role in RNA metabolism. It is essential for correct mitosis, and negatively regulates cell proliferation.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: -
>sp|Q8CI75|DI3L2_MOUSE DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1 Back     alignment and function description
>sp|Q0V9R3|DI3L2_XENTR DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=dis3l2 PE=2 SV=1 Back     alignment and function description
>sp|O14040|DIS3L_SCHPO Dis3-like exonuclease C2C4.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.07c PE=3 SV=1 Back     alignment and function description
>sp|Q09568|YR86_CAEEL Uncharacterized ribonuclease F48E8.6 OS=Caenorhabditis elegans GN=F48E8.6 PE=3 SV=2 Back     alignment and function description
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4 Back     alignment and function description
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2 Back     alignment and function description
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2 Back     alignment and function description
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2 Back     alignment and function description
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query973
255545438 1099 RNA binding protein, putative [Ricinus c 0.951 0.842 0.632 0.0
359492408 1131 PREDICTED: DIS3-like exonuclease 2-like 0.937 0.806 0.615 0.0
224066863860 predicted protein [Populus trichocarpa] 0.858 0.970 0.641 0.0
356550838 1184 PREDICTED: DIS3-like exonuclease 2-like 0.927 0.761 0.589 0.0
356551558 1133 PREDICTED: DIS3-like exonuclease 2-like 0.931 0.799 0.595 0.0
224082254944 predicted protein [Populus trichocarpa] 0.812 0.837 0.656 0.0
449446430 1125 PREDICTED: DIS3-like exonuclease 2-like 0.941 0.814 0.571 0.0
3021418471007 unnamed protein product [Vitis vinifera] 0.840 0.812 0.570 0.0
449499475 1159 PREDICTED: LOW QUALITY PROTEIN: DIS3-lik 0.934 0.784 0.570 0.0
2978425451062 ribonuclease II family protein [Arabidop 0.954 0.874 0.539 0.0
>gi|255545438|ref|XP_002513779.1| RNA binding protein, putative [Ricinus communis] gi|223546865|gb|EEF48362.1| RNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1173 bits (3034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/974 (63%), Positives = 734/974 (75%), Gaps = 48/974 (4%)

Query: 1   MRGGSAVEQSQPMVVDEVVD------KEKKKKNRRSNRRSNKNSSVNEIRGEATQTKNGY 54
           MR G+  EQS  +V++   D      KEKKK  RRSNRRS +NS  N + G    +++  
Sbjct: 2   MRSGT--EQSSTVVIERTEDGVADKDKEKKKNKRRSNRRSKQNSP-NLVNGGGELSQSSR 58

Query: 55  KTKNLTSSMNCSSTKQQDLDLHPLSEQDPTGASTVTFSSMPTMHINEEESAESGSTQSQL 114
           K+KN TSS+ C  + Q D D +              F+SMPTMHI+E         Q + 
Sbjct: 59  KSKNYTSSVGCFPSGQPDFDAY-------------AFNSMPTMHISE---------QVEH 96

Query: 115 LLATDLC--GSIISRSCPEPIANDSSCWAYTNKDDNPSHQSEARCKIFAPHWSMEAVNEA 172
           LL +DL   G   S SCPEPIA    C   +  + N       R KIFA HWS+EA++EA
Sbjct: 97  LLPSDLSIGGQAFSNSCPEPIAG-GLCPFDSISNIN------TRGKIFASHWSIEAIDEA 149

Query: 173 LEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWA 232
           LEKGDAFKA++ VNAHNRLEAYCKIEGV TDVLI+G+A QNRAVEGD V+IKVD L  W 
Sbjct: 150 LEKGDAFKAVFHVNAHNRLEAYCKIEGVSTDVLISGLAVQNRAVEGDMVVIKVDPLPCWT 209

Query: 233 KMKGF---SNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEY--SNCTLLSEKGIHHD 287
           KMKG    SN+ ++ ED N   E + M S  CKGK KV+V +++  S    L +KGIH +
Sbjct: 210 KMKGSNGPSNSIALAEDCNSAVELSEMASGSCKGKIKVEVDHDFAESGSFSLPQKGIHSE 269

Query: 288 DDS-SSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPT 346
           D S ++EA +QE+    GYN   G HPS S+S+   SS  Q++G NA+ RL  MISS+PT
Sbjct: 270 DSSCATEAVHQELNGSTGYNIGIGDHPSASESSNFGSSMGQHEGANAVGRLCTMISSHPT 329

Query: 347 KRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPT 406
           KRPTGRVV+IIERSPRRD I+GFLNV QWF  +   +KD+KKN++S S+ DREYIQL PT
Sbjct: 330 KRPTGRVVAIIERSPRRDAIIGFLNVKQWFYCREACKKDSKKNKNSSSISDREYIQLMPT 389

Query: 407 HPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGG 466
            PK+PKM+VL   LPDSIKKRLE GDAT+EMELVAA+ID W++ESP P AHV  +FGRG 
Sbjct: 390 DPKFPKMMVLASSLPDSIKKRLEGGDATVEMELVAAQIDNWDDESPSPHAHVSRIFGRGS 449

Query: 467 EVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTAT 526
           E+EPQ++AILYEN IC S FSPESLSC+PC  WEVP EE+  RKDLRN CIFTIDPSTAT
Sbjct: 450 ELEPQLSAILYENTICYSDFSPESLSCIPCDSWEVPAEEIRRRKDLRNLCIFTIDPSTAT 509

Query: 527 DLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLL 586
           DLDDALS+ERL +GI RVGVHIADVSYFVLP +ALD EAQ RSTSVY+L+ K+PMLP LL
Sbjct: 510 DLDDALSVERLPNGILRVGVHIADVSYFVLPDSALDKEAQARSTSVYLLRGKLPMLPPLL 569

Query: 587 SEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVE 646
           SE +GSLNPGVDRLAF+IFW+LNS GDV DRWIGRTVI+SCCKLSY+HAQ+++DG    E
Sbjct: 570 SENLGSLNPGVDRLAFTIFWELNSTGDVTDRWIGRTVIQSCCKLSYQHAQEMVDGVIREE 629

Query: 647 SSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYG 706
           + NT G   PQLYG F+WSDV+RS+KSL E+SK L++KRF DGAL+LE+SK  FLFDEYG
Sbjct: 630 ACNTFGNSLPQLYGPFDWSDVIRSVKSLNEISKTLREKRFNDGALQLESSKIGFLFDEYG 689

Query: 707 TPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFC 766
            PYDSVL GR+D +FL EEFMLLAN+TAAEVI+RAFPDSALLRRHPAPNMRKLREFEAFC
Sbjct: 690 IPYDSVLCGRKDSDFLVEEFMLLANRTAAEVISRAFPDSALLRRHPAPNMRKLREFEAFC 749

Query: 767 SKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDD-T 825
            KHGLQLD+SSSG FHQSLE  R KLKDD VL  IL++YA+RPMQLA+YFCSG  KD+  
Sbjct: 750 CKHGLQLDSSSSGNFHQSLECIRGKLKDDSVLCGILMSYASRPMQLATYFCSGVMKDNMN 809

Query: 826 DWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGR 885
           DWGHYALA  +YTHFTSPLRRYPD++VHRTL AA+EAE+LY + RR+  K    + V  R
Sbjct: 810 DWGHYALAVALYTHFTSPLRRYPDIIVHRTLAAAIEAEELYMRSRRISCKAGMGDKVM-R 868

Query: 886 FLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKL 945
             TGI++DKDAAES+EG+EALS AA K+ +PC + L NV  +CNDRKLA R+VKDAC KL
Sbjct: 869 CFTGIYFDKDAAESVEGKEALSAAASKHRIPCTESLANVVAYCNDRKLASRHVKDACDKL 928

Query: 946 YMWILLKKKEVLFS 959
           YMW LLK+KEVL S
Sbjct: 929 YMWALLKRKEVLLS 942

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359492408|ref|XP_002284419.2| PREDICTED: DIS3-like exonuclease 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224066863|ref|XP_002302251.1| predicted protein [Populus trichocarpa] gi|222843977|gb|EEE81524.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356550838|ref|XP_003543790.1| PREDICTED: DIS3-like exonuclease 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356551558|ref|XP_003544141.1| PREDICTED: DIS3-like exonuclease 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224082254|ref|XP_002306619.1| predicted protein [Populus trichocarpa] gi|222856068|gb|EEE93615.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446430|ref|XP_004140974.1| PREDICTED: DIS3-like exonuclease 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302141847|emb|CBI19050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449499475|ref|XP_004160827.1| PREDICTED: LOW QUALITY PROTEIN: DIS3-like exonuclease 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297842545|ref|XP_002889154.1| ribonuclease II family protein [Arabidopsis lyrata subsp. lyrata] gi|297334995|gb|EFH65413.1| ribonuclease II family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query973
TAIR|locus:2203231 1055 AT1G77680 [Arabidopsis thalian 0.650 0.6 0.622 1.7e-253
MGI|MGI:2442555870 Dis3l2 "DIS3 mitotic control h 0.467 0.522 0.445 4e-120
UNIPROTKB|Q8IYB7885 DIS3L2 "DIS3-like exonuclease 0.467 0.514 0.458 1.1e-119
UNIPROTKB|E1C372875 DIS3L2 "Uncharacterized protei 0.461 0.513 0.468 3.1e-118
ZFIN|ZDB-GENE-070705-171995 si:ch211-273k1.4 "si:ch211-273 0.467 0.457 0.447 1.2e-117
UNIPROTKB|E1B7R0882 DIS3L2 "Uncharacterized protei 0.521 0.574 0.437 2.3e-112
UNIPROTKB|E2QZ40870 DIS3L2 "Uncharacterized protei 0.562 0.628 0.410 1e-111
UNIPROTKB|F6XKS7879 DIS3L2 "Uncharacterized protei 0.562 0.622 0.410 1e-111
RGD|1560168884 Dis3l2 "DIS3 mitotic control h 0.467 0.514 0.447 3.1e-106
POMBASE|SPAC2C4.07c927 SPAC2C4.07c "ribonuclease II ( 0.525 0.551 0.406 1.2e-104
TAIR|locus:2203231 AT1G77680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2069 (733.4 bits), Expect = 1.7e-253, Sum P(2) = 1.7e-253
 Identities = 406/652 (62%), Positives = 497/652 (76%)

Query:   326 QQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKD 385
             +Q    +A+++L  ++SS+P KRPTG+VV+++E+S  RD IVG L+V  W +YK     D
Sbjct:   296 EQKGNCSAVDKLCGILSSFPHKRPTGQVVAVVEKSLVRDSIVGLLDVKGWIHYK---ESD 352

Query:   386 AKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARID 445
              K+ +S LS+ D EY+QL P  P++PK++V    LP SI+ RLE  D  +E ELVAA+I 
Sbjct:   353 PKRCKSPLSLSDDEYVQLMPADPRFPKLIVPFHVLPGSIRARLENLDPNLEAELVAAQIV 412

Query:   446 EWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEE 505
             +W E SPFP A + H+FGRG E+EPQINAILY+N++C S FSP SL+ LP VPWEVP+EE
Sbjct:   413 DWGEGSPFPVAQITHLFGRGSELEPQINAILYQNSVCDSDFSPGSLTSLPRVPWEVPEEE 472

Query:   506 LLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 565
             +  RKDLR+ C+ TIDPSTATDLDDALS++ L  G  RVGVHIADVSYFVLP TALD EA
Sbjct:   473 VQRRKDLRDLCVLTIDPSTATDLDDALSVQSLPGGFFRVGVHIADVSYFVLPETALDTEA 532

Query:   566 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIR 625
             + RSTSVY++QRKI MLP LLSE VGSL+PG DRLAFSI WDLN  GDV+DRWIGRT+IR
Sbjct:   533 RFRSTSVYLMQRKISMLPPLLSENVGSLSPGADRLAFSILWDLNREGDVIDRWIGRTIIR 592

Query:   626 SCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKR 685
             SCCKLSY+HAQDIIDGK DV  +     GWP L+G F+W DV RS+K L E+S  L+ KR
Sbjct:   593 SCCKLSYDHAQDIIDGKSDVAEN-----GWPALHGSFKWCDVTRSVKQLSEISTTLRQKR 647

Query:   686 FTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDS 745
             F +GAL+LENSKPVFLFDE+G PYD V   R+  NFL EEFMLLAN TAAEVI++A+  S
Sbjct:   648 FRNGALQLENSKPVFLFDEHGVPYDFVTCSRKGSNFLVEEFMLLANMTAAEVISQAYRAS 707

Query:   746 ALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINY 805
             +LLRRHP PN RKL+EFE FCSKHG+ LD SSSGQ   SLE+    LKDD V  DIL NY
Sbjct:   708 SLLRRHPEPNTRKLKEFEGFCSKHGMDLDISSSGQLQDSLEKITGNLKDDSVFVDILNNY 767

Query:   806 ATRPMQLASYFCSGDFKDDT-DWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 864
             A +PMQLASYFC+G+ KD   +WGHYALA P+YTHFTSPLRRYPD+VVHR L AALEAE+
Sbjct:   768 AIKPMQLASYFCTGNLKDSVAEWGHYALAVPLYTHFTSPLRRYPDIVVHRALAAALEAEE 827

Query:   865 LYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNV 924
             LY K ++        EG R  F TGI ++KDAAES+EG+EALSVAALK+GVP  +IL +V
Sbjct:   828 LYSKQKQTAID----EG-RSCF-TGIHFNKDAAESIEGKEALSVAALKHGVPSTEILSDV 881

Query:   925 ATHCNDRKLACRNVKDACVKLYMWILLKKKEVLFSC--LILYLTS-FSTIHV 973
             A +CN+RKLA R V+DAC KLY W +LK+KE+ F C   ++ L S F T+++
Sbjct:   882 AAYCNERKLAARKVRDACDKLYTWFVLKQKEI-FPCEARVMNLGSRFMTVYI 932
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0004540 "ribonuclease activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
MGI|MGI:2442555 Dis3l2 "DIS3 mitotic control homolog (S. cerevisiae)-like 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IYB7 DIS3L2 "DIS3-like exonuclease 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C372 DIS3L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070705-171 si:ch211-273k1.4 "si:ch211-273k1.4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1B7R0 DIS3L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZ40 DIS3L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6XKS7 DIS3L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1560168 Dis3l2 "DIS3 mitotic control homolog (S. cerevisiae)-like 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
POMBASE|SPAC2C4.07c SPAC2C4.07c "ribonuclease II (RNB) family (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.13LOW CONFIDENCE prediction!
3rd Layer3.1.13.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query973
COG0557706 COG0557, VacB, Exoribonuclease R [Transcription] 1e-117
pfam00773322 pfam00773, RNB, RNB domain 1e-111
TIGR02063709 TIGR02063, RNase_R, ribonuclease R 2e-99
smart00955286 smart00955, RNB, This domain is the catalytic doma 1e-93
TIGR00358654 TIGR00358, 3_prime_RNase, VacB and RNase II family 1e-69
PRK11642 813 PRK11642, PRK11642, exoribonuclease R; Provisional 7e-45
TIGR02062639 TIGR02062, RNase_B, exoribonuclease II 1e-26
COG4776645 COG4776, Rnb, Exoribonuclease II [Transcription] 3e-25
PRK05054644 PRK05054, PRK05054, exoribonuclease II; Provisiona 5e-25
>gnl|CDD|223631 COG0557, VacB, Exoribonuclease R [Transcription] Back     alignment and domain information 
 Score =  374 bits (963), Expect = e-117
 Identities = 188/516 (36%), Positives = 253/516 (49%), Gaps = 67/516 (12%)

Query: 347 KRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPT 406
           +     VV I+ER      +VG L  +Q                    +PD + +     
Sbjct: 123 RFKEAAVVRILER--ANSALVGELRPSQGIGRV---------------LPDDKRLP---- 161

Query: 407 HPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGG 466
                 + +  +  P       EEG       LV   I  W + S  P   V+ V G  G
Sbjct: 162 ----FLIAIPPEQAPG-----AEEGH------LVVVEITRWPDTSRPPFGEVVEVLGDLG 206

Query: 467 EVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTAT 526
           +    I AIL ++ I  S F  + L     +P EVP+E+L  R DLR+  IFTIDP  A 
Sbjct: 207 DPGADIEAILRDHGI-PSEFPEKVLDEAAALPDEVPEEDLKGRVDLRDLPIFTIDPEDAK 265

Query: 527 DLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLL 586
           DLDDA+S+E+L +G  R+GVHIADVS++V PG+ALD EA+ R TSVY+  R IPMLP  L
Sbjct: 266 DLDDAVSVEKLRNGGYRLGVHIADVSHYVQPGSALDKEARKRGTSVYLPDRVIPMLPEAL 325

Query: 587 SEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVE 646
           S  + SLNPGVDRLA S    L+S G V    I  +VI+S  +L+YE  Q I+DGK D +
Sbjct: 326 SNGLCSLNPGVDRLALSCEMTLDSEGRVKKYEIYPSVIKSAARLTYEEVQAILDGKEDDK 385

Query: 647 SSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYG 706
                             + ++ S+  L E++KILK KR + GA+  +  +   + DE G
Sbjct: 386 Y-----------------APLLDSLLELLELAKILKKKRLSRGAIDFDTPEAKIVLDEEG 428

Query: 707 TPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFC 766
            P +  +  R D   L EEFMLLAN+T AE + +      L R H  P+  KL+    F 
Sbjct: 429 RPVEIEIRERLDAEKLIEEFMLLANETVAEHLEKHKIP-LLYRTHERPSTEKLQSLREFL 487

Query: 767 SKHGLQLDTSSSGQFHQSLEQAREKLKD--DYVLFDILINYATRPMQLASYFCSGDFKDD 824
              GL L    S    Q  +   E +K      +   L+    R M+ A Y         
Sbjct: 488 QNLGLVLPLGGSKPQPQDYQILLETVKGRPLEAVLQTLLL---RSMKQAEY-------SP 537

Query: 825 TDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 860
            + GH+ LA   YTHFTSP+RRYPDL+VHR L A L
Sbjct: 538 DNVGHFGLALDYYTHFTSPIRRYPDLIVHRQLKALL 573

Length = 706
>gnl|CDD|216112 pfam00773, RNB, RNB domain Back     alignment and domain information
>gnl|CDD|233703 TIGR02063, RNase_R, ribonuclease R Back     alignment and domain information
>gnl|CDD|214935 smart00955, RNB, This domain is the catalytic domain of ribonuclease II Back     alignment and domain information
>gnl|CDD|232937 TIGR00358, 3_prime_RNase, VacB and RNase II family 3'-5' exoribonucleases Back     alignment and domain information
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional Back     alignment and domain information
>gnl|CDD|131117 TIGR02062, RNase_B, exoribonuclease II Back     alignment and domain information
>gnl|CDD|227117 COG4776, Rnb, Exoribonuclease II [Transcription] Back     alignment and domain information
>gnl|CDD|179920 PRK05054, PRK05054, exoribonuclease II; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 973
KOG2102941 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
TIGR00358654 3_prime_RNase VacB and RNase II family 3'-5' exori 100.0
PRK11642 813 exoribonuclease R; Provisional 100.0
TIGR02063709 RNase_R ribonuclease R. This family consists of an 100.0
PRK05054644 exoribonuclease II; Provisional 100.0
TIGR02062639 RNase_B exoribonuclease II. This family consists o 100.0
COG0557706 VacB Exoribonuclease R [Transcription] 100.0
PF00773325 RNB: RNB domain CAUTION: The Prosite pattern does 100.0
COG4776645 Rnb Exoribonuclease II [Transcription] 100.0
PF0820658 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013 97.77
PF0820658 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013 86.49
smart0035764 CSP Cold shock protein domain. RNA-binding domain 84.45
>KOG2102 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.8e-117  Score=1085.44  Aligned_cols=636  Identities=39%  Similarity=0.641  Sum_probs=542.7

Q ss_pred             ccCccCCCCHHHHHHHHHcCCeEEEEEEeccCCceeEEEEeCCcceeEEEeCCCCccccCCCCEEEEEEccchhhhhccC
Q 002070          157 CKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKMKG  236 (973)
Q Consensus       157 k~~F~~hls~~~V~~gLk~G~l~qG~LRVN~~N~~eAyV~~~g~~~DVlI~G~~~rNRAl~GDiVaVeLlp~~~W~~~k~  236 (973)
                      |.+|++|||++.+.+||++|.+++|+||||++|+.||||.++++..+|+|+|.++||||++||+|||||+|..+|.....
T Consensus       219 k~~~~~~l~~~~~~~~~~~g~~~~g~l~i~~~n~~e~~v~~~~~~~~v~i~G~~~~NRa~~gdvVavell~~~~~~~~~~  298 (941)
T KOG2102|consen  219 KLLFSPYLPMAKIKAGIKSGRLVQGTLRISRKNLSEAFVRVQGLDHPVLICGSKDRNRALDGDVVAVELLPVDEWRVELS  298 (941)
T ss_pred             ceeeccccchhhHhhhhcccceeeceEEecccccccceeeccccCCceEEeCchhhhhhhcCCeEEEEeccchhccccch
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999952110


Q ss_pred             CCCCCCccccCCCcccccCCCcccccCCccccccccccccccccccCCCCCCCCchhhhhhhhhhhccccccCCCCCCCC
Q 002070          237 FSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTS  316 (973)
Q Consensus       237 ~~~~~~~~~~~~~~~e~~e~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (973)
                               ....  +   .      +  .......        .++...++.                           
T Consensus       299 ---------~~~~--~---~------~--~~~~~~~--------~~~~~~e~~---------------------------  321 (941)
T KOG2102|consen  299 ---------SIFL--D---S------V--KVSSNIK--------ESDDEDEDG---------------------------  321 (941)
T ss_pred             ---------hhhc--c---c------c--ccccccc--------ccccccccc---------------------------
Confidence                     0000  0   0      0  0000000        000000000                           


Q ss_pred             CccccccccccccchhhhhheeeeeecCCCCCccEEEEEEEecCCCCcceEEEEEeccccccCCCCcccccccCCCCCCC
Q 002070          317 DSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVP  396 (973)
Q Consensus       317 ~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~p~G~VV~IleR~~~~~~~vG~l~~~~~~~~~~~~~~~~~k~~~~~~~~  396 (973)
                                ...    .....+. .....-.++|+||+|++|+|++  ++|.+....+.         +.+.      .
T Consensus       322 ----------~~~----~~~~~~~-~~~~~~~~~~~VV~il~r~~~~--~~~~l~~~~~~---------~~~~------~  369 (941)
T KOG2102|consen  322 ----------TLN----LRGKAVL-SDPLPVQPTGKVVAILRRNWRQ--YVGGLLPLSEQ---------ALKG------S  369 (941)
T ss_pred             ----------ccc----ccccccc-cccccccccceEEEEEecCcee--eeccccCcccc---------cccc------c
Confidence                      000    0000000 0000134699999999999964  55555421110         0011      1


Q ss_pred             CCceEEEEeCCCCCCceEEecC-CCChhhhhhcccCCccccceEEEEEEeecCCCCCCCcEEEEEecCCCCChhHHHHHH
Q 002070          397 DREYIQLTPTHPKYPKMVVLVK-DLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAI  475 (973)
Q Consensus       397 ~~~~~~~~P~D~rip~i~i~~~-~~p~~~~~~~~~gd~~~~~~lvvv~I~~wp~~s~~P~G~iv~~LG~~gd~~~e~~ai  475 (973)
                      ...++||+|.|+|+|++.|+++ +..            .+.+.++++.|++||.++.||.|++++.||..++.++++++|
T Consensus       370 ~~~~~~~~p~DkRvP~i~i~t~~~~~------------~~~~~~~~~~I~~W~~ts~~p~g~~v~~lG~i~~~~~e~~aL  437 (941)
T KOG2102|consen  370 SALIVLFIPSDKRVPLIRILTDDQAQ------------DLIDKRIVAAIDRWPRTSLYPFGHLVRELGTIGDTETETEAL  437 (941)
T ss_pred             ccceeeeccccCCCCeeecccccccc------------chhceeEEEEecccccCCcccCceehhhccCcCCccchhhhh
Confidence            2478999999999999999987 332            234678999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCChhhhccCCC-CCCCCChhhhcc-CccCCCceEEEEcCCCCCCCCceEEEEEcCCceEEEEEEEccccc
Q 002070          476 LYENAICCSGFSPESLSCLPC-VPWEVPQEELLS-RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSY  553 (973)
Q Consensus       476 l~e~~l~~~~Fs~~vl~~l~~-~~~~i~~~e~~~-R~DLr~l~vfTIDp~~AkDlDDAlSie~l~~G~~~lgVHIADVS~  553 (973)
                      |.+|++...+|+++++.|+|. .+|.+++++... |.|||++.||+|||++|.||||||||+.++||+|+||||||||||
T Consensus       438 L~en~v~~~~f~~~~~~~lp~~~~~~~~~~~~~~~R~Dlr~~~i~~IDp~~~~dlDdAL~~~~l~nG~~evGVHIADVt~  517 (941)
T KOG2102|consen  438 LLENGVPHKPFSQALLDCLPRSHPWPITEEELQKLRKDLRDLLIFSIDPPGATDLDDALHVRNLPNGNLEVGVHIADVTH  517 (941)
T ss_pred             hhcCCCcccccCHHHHhcCCccCCCCcChHHhhhhhhhhhhceEEeecCCCccchhhhhheeecCCCcEEEEEEeccchh
Confidence            999999889999999999999 999999999998 999999999999999999999999999999999999999999999


Q ss_pred             cccCCCHhhHHHHhccceeecCCCcccCCChhhhhcccCCCCCCceEEEEEEEEEcCCCCEEEEEEEEEEEecCcccCHH
Q 002070          554 FVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYE  633 (973)
Q Consensus       554 fV~~gS~LD~eA~~RgtSvYLp~rvipMLP~~Ls~~lcSL~pg~dRlA~Sv~~~id~~G~i~~~~f~~SvIrS~~rLTYe  633 (973)
                      ||.|||+||+||++|||||||++++|||||+.||+++|||.||+||+||||.|+|+.+|.|+..||++|+|+|+++|+|+
T Consensus       518 fV~pgs~lD~eA~~R~ttvyL~q~~i~MLP~~L~~~lcSL~~g~dr~aFSvvwel~~~~~i~~~~f~ksvI~s~~~lsye  597 (941)
T KOG2102|consen  518 FVKPGSALDREAARRGTTVYLVQKRIPMLPKLLSEELCSLRPGVDRLAFSVVWELDSDGSILKTWFGKSVIRSKAALSYE  597 (941)
T ss_pred             hcCCCCccCHHHHhhcceEEeccccccCCchhhhhhheeccCCCceeeEEEEEEEcCCCceeeceecchhcccchhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCCCccccCcCCCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCCceeeeCCCC-CeeEEE
Q 002070          634 HAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYG-TPYDSV  712 (973)
Q Consensus       634 ~vq~iL~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~L~~L~~lA~~Lr~~R~~~Gal~l~~~e~~~~lDe~g-~p~~~~  712 (973)
                      +||++|+++..                   ..++...|+.|.+||+.||++|+.+|++.+..+++.|.+|+.+ .|.++.
T Consensus       598 ~Aq~~id~~~~-------------------~~~v~~~l~~l~~ia~~lr~~R~~~gal~l~~~e~~~~~d~~~~~p~~~e  658 (941)
T KOG2102|consen  598 EAQDILDTPNS-------------------SDPLTSSLRLLHEIAKILRQKRLDNGALLLRSPELRFLLDEEKPNPQDVE  658 (941)
T ss_pred             HHHHHhcCCcc-------------------cchhhhhHHHHHHHHHHHHHHHhccCCcccccHhHHhhhccCCCCccccc
Confidence            99999998422                   1267789999999999999999999999999999999999876 788888


Q ss_pred             eccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEeCCCCChHHHHHHHHHHHHcCCccCCCChhHHHHHHHHHHHhh
Q 002070          713 LSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKL  792 (973)
Q Consensus       713 ~~~~~~s~~LIEEfMllAN~~VA~~l~~~~~~~allR~H~~P~~~kl~~l~~~~~~~G~~ld~~~s~~l~~sL~~i~~~~  792 (973)
                      .++..+++.||||||++||.+||++|...||.+++||+||.|....++.+.++|..+|+.+|.++++.|..+|.++.+..
T Consensus       659 ~~~~~~~n~lveEfmllaN~~vA~~I~~~f~~~alLR~hp~P~~~~~~~~~~~~~~~g~~ld~sS~~~L~~Sl~r~~~~~  738 (941)
T KOG2102|consen  659 VKELTETNFLVEEFMLLANISVAEKILASFPSLALLRRHPSPPPENFKPLVSLCLELGFNLDTSSSKSLADSLDRIRDDD  738 (941)
T ss_pred             eeeeehhhhHHHHHHHHHhHHHHHHHHHhCCchhhhccCCCCccccccHHHHHHHHcCCCccccchHHHhhhHhhhcCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999998753


Q ss_pred             cCCHHHHHHHHHHHcccccCceecccCCCCCCCCcccccccCCCccccccccCchhhHHHHHHHHHHHHhhhhhhhhhcc
Q 002070          793 KDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRM  872 (973)
Q Consensus       793 ~~~~~~~~~L~~~~lr~m~~A~Y~~sg~~~s~~~~~HfgL~~~~YTHFTSPIRRYaDLiVHR~L~a~L~~~~~~~~~~~~  872 (973)
                        .|....+|..+++|+|.+|+|||+|.. ++..++|||||+|.|||||||||||+||+|||||++......        
T Consensus       739 --~p~~~~~l~~l~~r~m~~A~yf~sg~~-~~~~~~HygLa~p~YTHFTsPiRRY~DIivHrqL~~~~~~~~--------  807 (941)
T KOG2102|consen  739 --KPYLNTLLRILATRSMTRAVYFCSGSS-DTPQFHHYGLASPLYTHFTSPIRRYADIIVHRQLAAAFLERS--------  807 (941)
T ss_pred             --hHHHHHHHHHHHhhhhhceeEEeeccc-CcchhhchhhcccchhhccCcccccchHHHHHHHHHHhhccC--------
Confidence              367777889999999999999999973 568899999999999999999999999999999997332110        


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhHHHHHhhhcCCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002070          873 LPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLK  952 (973)
Q Consensus       873 ~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~ia~~cNerk~~Ar~a~~~~~~l~~~~~~k  952 (973)
                      .                                        ..++...+..+|.+||.|+++|+.|+++|..+|++.|++
T Consensus       808 ~----------------------------------------~~~~~~~l~~i~~~~N~r~~~a~~a~~~S~~l~~~~~~k  847 (941)
T KOG2102|consen  808 P----------------------------------------TAPDRPNLSSLAANCNERKKAAKKAQEASTELYLCEYLK  847 (941)
T ss_pred             c----------------------------------------cccccccHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHH
Confidence            0                                        011123688999999999999999999999999999999


Q ss_pred             hcccEeeCeEEE
Q 002070          953 KKEVLFSCLILY  964 (973)
Q Consensus       953 ~~~~~~~~~iv~  964 (973)
                      .+ .+..+|+|+
T Consensus       848 ~~-~~~~~a~v~  858 (941)
T KOG2102|consen  848 DK-QVLEEAVVL  858 (941)
T ss_pred             hc-ccccceEEE
Confidence            98 556666665

>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases Back     alignment and domain information
>PRK11642 exoribonuclease R; Provisional Back     alignment and domain information
>TIGR02063 RNase_R ribonuclease R Back     alignment and domain information
>PRK05054 exoribonuclease II; Provisional Back     alignment and domain information
>TIGR02062 RNase_B exoribonuclease II Back     alignment and domain information
>COG0557 VacB Exoribonuclease R [Transcription] Back     alignment and domain information
>PF00773 RNB: RNB domain CAUTION: The Prosite pattern does not correspond to this Pfam Back     alignment and domain information
>COG4776 Rnb Exoribonuclease II [Transcription] Back     alignment and domain information
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies Back     alignment and domain information
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies Back     alignment and domain information
>smart00357 CSP Cold shock protein domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query973
2wp8_J977 Yeast Rrp44 Nuclease Length = 977 6e-68
4ifd_J1003 Crystal Structure Of An 11-subunit Eukaryotic Exoso 7e-68
2vnu_D760 Crystal Structure Of Sc Rrp44 Length = 760 2e-61
2ix0_A663 Rnase Ii Length = 663 5e-17
2ix1_A664 Rnase Ii D209n Mutant Length = 664 2e-16
2r7d_A469 Crystal Structure Of Ribonuclease Ii Family Protein 1e-12
2id0_A644 Escherichia Coli Rnase Ii Length = 644 4e-12
>pdb|2WP8|J Chain J, Yeast Rrp44 Nuclease Length = 977 Back     alignment and structure 
Iteration: 1

 Score =  256 bits (653), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 229/751 (30%), Positives = 341/751 (45%), Gaps = 136/751 (18%)
Query: 160 FAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGD 219
           F  ++S   V   L+ G  ++   +++ +N LE    +      VLI G    NRA  GD
Sbjct: 231 FPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGD 290
Query: 220 FVLIKVDRLSLWAKMKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLL 279
            V++++   S W         SSIV DS         H D+       D+          
Sbjct: 291 QVIVELLPQSEWKA------PSSIVLDSE--------HFDV---NDNPDI---------- 323
Query: 280 SEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPXXXXXXXXXXXXQQNDGMNAIERLSA 339
            E G   DDD++  + N  +I                           +D    +    A
Sbjct: 324 -EAG--DDDDNNESSSNTTVI---------------------------SDKQRRLLAKDA 353
Query: 340 MISSYPTK-RPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDR 398
           MI+    K +PT +VV I  RS              W  Y G     +   +SS +    
Sbjct: 354 MIAQRSKKIQPTAKVVYIQRRS--------------WRQYVGQLAPSSVDPQSSST---- 395
Query: 399 EYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHV 458
                     +   ++++ K LP  ++ R       ++  +V + ID W     +P  H 
Sbjct: 396 ----------QNVFVILMDKCLP-KVRIRTRRAAELLDKRIVIS-IDSWPTTHKYPLGHF 443
Query: 459 LHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCV------------PWEVPQEEL 506
           +   G     + +  A+L E+ +    FS + L CLP              P  V ++ L
Sbjct: 444 VRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPL 503
Query: 507 LS-RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 565
           L+ RKDLR+  I +IDP    D++DAL  ++L +G   VGVHIADV++FV PGTALD E 
Sbjct: 504 LTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEG 563
Query: 566 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIR 625
             R TSVY++ ++I MLP+LL  ++ SL P VDR AFS+ W+L+ + ++V+    ++VIR
Sbjct: 564 AARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIR 623
Query: 626 SCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKR 685
           S    SYE AQ  ID K     ++ L  G                +++L ++S  LK KR
Sbjct: 624 SREAFSYEQAQLRIDDK---TQNDELTMG----------------MRALLKLSVKLKQKR 664
Query: 686 FTDGALRLENSK-PVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPD 744
              GAL L + +  V +  E   P +  +      N L EEFMLLAN + A  I  AFP 
Sbjct: 665 LEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQ 724
Query: 745 SALLRRHPAP---NMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDI 801
           +A+LRRH AP   N   L E     ++  + +   SS     SL++  +  +D Y  F+ 
Sbjct: 725 TAMLRRHAAPPSTNFEILNEM--LNTRKNMSISLESSKALADSLDRCVDP-EDPY--FNT 779
Query: 802 LIN-YATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 860
           L+   +TR M  A YF SG +    D+ HY LA  +YTHFTSP+RRY D+V HR L  A+
Sbjct: 780 LVRIMSTRCMMAAQYFYSGAYS-YPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAI 838
Query: 861 EAEKLYWKHR-----RMLPKNNHREGVRGRF 886
             E L   HR      M+ +N +R+    +F
Sbjct: 839 GYEPLSLTHRDKNKMDMICRNINRKHRNAQF 869
>pdb|4IFD|J Chain J, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 1003 Back     alignment and structure
>pdb|2VNU|D Chain D, Crystal Structure Of Sc Rrp44 Length = 760 Back     alignment and structure
>pdb|2IX0|A Chain A, Rnase Ii Length = 663 Back     alignment and structure
>pdb|2IX1|A Chain A, Rnase Ii D209n Mutant Length = 664 Back     alignment and structure
>pdb|2R7D|A Chain A, Crystal Structure Of Ribonuclease Ii Family Protein From Deinococcus Radiodurans, Triclinic Crystal Form. Northeast Structural Genomics Target Drr63 Length = 469 Back     alignment and structure
>pdb|2ID0|A Chain A, Escherichia Coli Rnase Ii Length = 644 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query973
2vnu_D760 Exosome complex exonuclease RRP44; hydrolase-RNA c 0.0
2wp8_J977 Exosome complex exonuclease DIS3; nucleus, hydrola 0.0
2id0_A644 Exoribonuclease 2; RNAse, exonuclease, hydrolyase, 1e-115
2r7d_A469 Ribonuclease II family protein; structural genomic 1e-101
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 Length = 760 Back     alignment and structure
 Score =  588 bits (1519), Expect = 0.0
 Identities = 207/837 (24%), Positives = 328/837 (39%), Gaps = 169/837 (20%)

Query: 147 DNPSHQSEARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLI 206
           D    +       F  ++S   V   L+ G  ++   +++ +N LE    +      VLI
Sbjct: 1   DKDLERDTFSDFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLI 60

Query: 207 TGIAAQNRAVEGDFVLIKVDRLSLWAKMKGFSNNSSIVEDSNLPTEANGMHSDICKGKSK 266
            G    NRA  GD V++++   S W                                   
Sbjct: 61  VGQKNLNRAFNGDQVIVELLPQSEWKAPSSI----------------------------- 91

Query: 267 VDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQ 326
                      +L  +    +D+   EA + +       N               V S +
Sbjct: 92  -----------VLDSEHFDVNDNPDIEAGDDDDNNESSSNTT-------------VISDK 127

Query: 327 QNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDA 386
           Q   +     ++         +PT +VV I  RS R+   VG L                
Sbjct: 128 QRRLLAKDAMIA---QRSKKIQPTAKVVYIQRRSWRQ--YVGQL---------------- 166

Query: 387 KKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDE 446
             +         + + +       PK+ +  +   + + KR            +   ID 
Sbjct: 167 APSSVDPQSSSTQNVFVILMDKCLPKVRIRTRRAAELLDKR------------IVISIDS 214

Query: 447 WNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCV--PWEVPQ- 503
           W     +P  H +   G     + +  A+L E+ +    FS + L CLP     W+ P  
Sbjct: 215 WPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTK 274

Query: 504 ----------EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSY 553
                       L  RKDLR+  I +IDP    D++DAL  ++L +G   VGVHIADV++
Sbjct: 275 LDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTH 334

Query: 554 FVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGD 613
           FV PGTALD E   R TSVY++ ++I MLP+LL  ++ SL P VDR AFS+ W+L+ + +
Sbjct: 335 FVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSAN 394

Query: 614 VVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKS 673
           +V+    ++VIRS    SYE AQ  ID K   +                   ++   +++
Sbjct: 395 IVNVNFMKSVIRSREAFSYEQAQLRIDDKTQND-------------------ELTMGMRA 435

Query: 674 LYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANK 732
           L ++S  LK KR   GAL L + +     D E   P +  +      N L EEFMLLAN 
Sbjct: 436 LLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANI 495

Query: 733 TAAEVIARAFPDSALLRRHPAPNMRKLREFEAFC-SKHGLQLDTSSSGQFHQSLEQAREK 791
           + A  I  AFP +A+LRRH AP             ++  + +   SS     SL++  + 
Sbjct: 496 SVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVD- 554

Query: 792 LKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLV 851
             +D     ++   +TR M  A YF SG +    D+ HY LA  +YTHFTSP+RRY D+V
Sbjct: 555 -PEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYP-DFRHYGLAVDIYTHFTSPIRRYCDVV 612

Query: 852 VHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAAL 911
            HR L  A+  E L   H                       DK+                
Sbjct: 613 AHRQLAGAIGYEPLSLTH----------------------RDKNK--------------- 635

Query: 912 KYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLFSCLILYLTSF 968
                    +  +  + N +    +    A ++ Y+  +++  E   +  ++ + + 
Sbjct: 636 ---------MDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNESTETGYVIKVFNN 683
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 977 Back     alignment and structure
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A Length = 644 Back     alignment and structure
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A Length = 469 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query973
2vnu_D760 Exosome complex exonuclease RRP44; hydrolase-RNA c 100.0
2wp8_J977 Exosome complex exonuclease DIS3; nucleus, hydrola 100.0
2id0_A644 Exoribonuclease 2; RNAse, exonuclease, hydrolyase, 100.0
2r7d_A469 Ribonuclease II family protein; structural genomic 100.0
1a62_A130 RHO; transcription termination, termination, RNA b 88.81
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 Back     alignment and structure
Probab=100.00  E-value=2.9e-132  Score=1213.98  Aligned_cols=666  Identities=30%  Similarity=0.458  Sum_probs=547.7

Q ss_pred             CCcCCccCccCCCCHHHHHHHHHcCCeEEEEEEeccCCceeEEEEeCCcceeEEEeCCCCccccCCCCEEEEEEccchhh
Q 002070          152 QSEARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLW  231 (973)
Q Consensus       152 ~~~~~k~~F~~hls~~~V~~gLk~G~l~qG~LRVN~~N~~eAyV~~~g~~~DVlI~G~~~rNRAl~GDiVaVeLlp~~~W  231 (973)
                      +.+.++.+|+||||+++|.+||++|+|++|+||||++|+.+|||.+++.+.||||+|.+++|||+|||+|+|+|+|..+|
T Consensus         6 ~~~~~~~~f~~yl~~~~l~~~~~~g~l~~G~l~~~~~~~~~gfv~~~~~~~di~I~~~~~~n~A~~GD~V~V~i~~~~~~   85 (760)
T 2vnu_D            6 RDTFSDFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEW   85 (760)
T ss_dssp             -----CCCCCCCCCHHHHHHHHHHTSEEEEEEEECSSBTTEEEECCSSSSSCEEEESHHHHTTCCTTCEEEEEECCGGGC
T ss_pred             ccccCCCcCcccCCHHHHHHHHHcCCEEEEEEEEecCCCccEEEEcCCCCCCEEEcChhhhccccCCCEEEEEEeccccc
Confidence            44477889999999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             hhccCCCCCCCccccCCCcccccCCCcccccCCccccccccccccccccccCCCCCCCCchhhhhhhhhhhccccccCCC
Q 002070          232 AKMKGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGH  311 (973)
Q Consensus       232 ~~~k~~~~~~~~~~~~~~~~e~~e~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (973)
                      ..+++..    ..++...      ++.+.. |.                 .+...+++. .+           .    +.
T Consensus        86 ~~~~~~~----~~~~~~~------~~~~~~-~~-----------------~~~~~~~~~-~~-----------~----~~  121 (760)
T 2vnu_D           86 KAPSSIV----LDSEHFD------VNDNPD-IE-----------------AGDDDDNNE-SS-----------S----NT  121 (760)
T ss_dssp             BCCCSSC----BCTTTCC--------------------------------------------------------------
T ss_pred             ccccccc----ccccccc------cccccc-cc-----------------ccccccccc-cc-----------c----cc
Confidence            7644310    0000000      000000 00                 000000000 00           0    00


Q ss_pred             CCCCCCccccccccccccchhhhhheeeeee-cCCCCCccEEEEEEEecCCCCcceEEEEEeccccccCCCCcccccccC
Q 002070          312 HPSTSDSTEKVSSSQQNDGMNAIERLSAMIS-SYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNR  390 (973)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~-~~~~~~p~G~VV~IleR~~~~~~~vG~l~~~~~~~~~~~~~~~~~k~~  390 (973)
                       ...++.......+         +.   .+. ...+++|+|+||+||+|+++  .|||+|.....              .
T Consensus       122 -~~~~~~~~~~~~~---------~~---~~~~~~~~~~~eG~Vv~IleR~~~--~~vG~l~~~~~--------------~  172 (760)
T 2vnu_D          122 -TVISDKQRRLLAK---------DA---MIAQRSKKIQPTAKVVYIQRRSWR--QYVGQLAPSSV--------------D  172 (760)
T ss_dssp             ------------------------------------CBCBEEEEEEEECCCC--EEEEEECGGGC--------------C
T ss_pred             -ccccchhhhhhhh---------hh---hhccccCCCCceEEEEEEEEECCc--eEEEEEEEccC--------------c
Confidence             0000000000000         00   000 01235789999999999974  59999973110              0


Q ss_pred             CCCCCCCCceEEEEeCCCCCCceEEecCCCChhhhhhcccCCccccceEEEEEEeecCCCCCCCcEEEEEecCCCCChhH
Q 002070          391 SSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEP  470 (973)
Q Consensus       391 ~~~~~~~~~~~~~~P~D~rip~i~i~~~~~p~~~~~~~~~gd~~~~~~lvvv~I~~wp~~s~~P~G~iv~~LG~~gd~~~  470 (973)
                      .  .....+++||+|.|+|+|.|.|++.+.+.            +.+.+|+|+|++||..+.+|.|+|+++||..+++++
T Consensus       173 ~--~~~~~~~~~~~P~d~ri~~i~i~~~~~~~------------~~g~~vvv~i~~~p~~~~~p~G~i~~~LG~~~d~~~  238 (760)
T 2vnu_D          173 P--QSSSTQNVFVILMDKCLPKVRIRTRRAAE------------LLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQA  238 (760)
T ss_dssp             T--TCCSCEEEEEEESSTTSCCEEEEETTGGG------------GTTEEEEEEEEECCTTCSSCEEEEEEEEEESSCSHH
T ss_pred             c--ccCccceEEEEECCCCCccEEEecccccc------------cCCCEEEEEEeeccCCCCCCcEEEEEEeCCCCCchh
Confidence            0  00112578999999999999898765321            235689999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCChhhhccCCCC--CCCCCh----------h-hhccCccCCCceEEEEcCCCCCCCCceEEEEEc
Q 002070          471 QINAILYENAICCSGFSPESLSCLPCV--PWEVPQ----------E-ELLSRKDLRNFCIFTIDPSTATDLDDALSIERL  537 (973)
Q Consensus       471 e~~ail~e~~l~~~~Fs~~vl~~l~~~--~~~i~~----------~-e~~~R~DLr~l~vfTIDp~~AkDlDDAlSie~l  537 (973)
                      ++++||.+|+|...+||++|++|++..  +|.+++          + +.++|+|||++++|||||++|+||||||||+++
T Consensus       239 e~~~il~~~~l~~~~F~~~vl~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~R~Dlr~l~~~TID~~~a~D~DDAvsie~~  318 (760)
T 2vnu_D          239 ETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKL  318 (760)
T ss_dssp             HHHHHHHHTTCCCSCCCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEEEEEEC
T ss_pred             HHHHHHHHCCCCCcCCCHHHHHHHHhcccccccccccccccccccccchhcccccccCeEEEEcCCCCCcccceEEEEEc
Confidence            999999999996556999999999998  898873          3 678999999999999999999999999999999


Q ss_pred             CCceEEEEEEEccccccccCCCHhhHHHHhccceeecCCCcccCCChhhhhcccCCCCCCceEEEEEEEEEcCCCCEEEE
Q 002070          538 SDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDR  617 (973)
Q Consensus       538 ~~G~~~lgVHIADVS~fV~~gS~LD~eA~~RgtSvYLp~rvipMLP~~Ls~~lcSL~pg~dRlA~Sv~~~id~~G~i~~~  617 (973)
                      ++|+|+||||||||||||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|+++
T Consensus       319 ~~g~~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~rviPMLP~~Ls~~lcSL~p~~dRla~S~~~~id~~G~v~~~  398 (760)
T 2vnu_D          319 PNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNV  398 (760)
T ss_dssp             TTSCEEEEEEEECHHHHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEE
T ss_pred             CCCcEEEEEEeccHHHeeCCCCHHHHHHHHcCCcEecCCceEeCCChHHcccccccCCCCcEEEEEEEEEEcCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecCcccCHHHHHHHHccCCCccccCcCCCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCC
Q 002070          618 WIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSK  697 (973)
Q Consensus       618 ~f~~SvIrS~~rLTYe~vq~iL~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~L~~L~~lA~~Lr~~R~~~Gal~l~~~e  697 (973)
                      +|++|+|+|+++|||++||++|++..                   ...++.++|..|++||++||++|+++|+|+|+.|+
T Consensus       399 ~~~~svI~s~~rltY~~v~~~l~~~~-------------------~~~~l~~~L~~L~~la~~lr~~R~~~Gai~~~~pe  459 (760)
T 2vnu_D          399 NFMKSVIRSREAFSYEQAQLRIDDKT-------------------QNDELTMGMRALLKLSVKLKQKRLEAGALNLASPE  459 (760)
T ss_dssp             EEEEEEEEBSEEEEHHHHHHHHHCTT-------------------CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred             EEEEEEEEecceEcHHHHHHHHhCCC-------------------cchHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc
Confidence            99999999999999999999998731                   12357789999999999999999999999999999


Q ss_pred             ceeeeC-CCCCeeEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEeCCCCChHHHHHHHHHHHHc-CCccCC
Q 002070          698 PVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKH-GLQLDT  775 (973)
Q Consensus       698 ~~~~lD-e~g~p~~~~~~~~~~s~~LIEEfMllAN~~VA~~l~~~~~~~allR~H~~P~~~kl~~l~~~~~~~-G~~ld~  775 (973)
                      ++|.+| ++|.|+++..+++.+||+|||||||+||++||+|+.++++.|++||+|+.|++++++.|.+++..+ |+.++.
T Consensus       460 ~~~~ld~e~g~~~~i~~~~~~~a~~lIeE~MllAN~~vA~~l~~~~~~~~l~R~h~~P~~~~l~~l~~~~~~~~g~~l~~  539 (760)
T 2vnu_D          460 VKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISL  539 (760)
T ss_dssp             EEEEECSSSSCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCC
T ss_pred             eEEEEecCCCcEEEEEEcCCccHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCCCHHHHHHHHHHHHHccCCCcCC
Confidence            999999 889999999999999999999999999999999999999999999999999999999999999999 999998


Q ss_pred             CChhHHHHHHHHHHHhhcCCHHHHHHHHHHHcccccCceecccCCCCCCCCcccccccCCCccccccccCchhhHHHHHH
Q 002070          776 SSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRT  855 (973)
Q Consensus       776 ~~s~~l~~sL~~i~~~~~~~~~~~~~L~~~~lr~m~~A~Y~~sg~~~s~~~~~HfgL~~~~YTHFTSPIRRYaDLiVHR~  855 (973)
                      .+++.|+.+|.++.+  ..++.+..+|..+++|+|++|.|+|+|.+ ++.+.+|||||++.|||||||||||+|||||||
T Consensus       540 ~~~~~l~~~l~~~~~--~~~~~~~~ll~~~~~r~m~~A~Y~~~g~~-~~~~~~HfgLa~~~YtHfTSPIRRY~DLivHR~  616 (760)
T 2vnu_D          540 ESSKALADSLDRCVD--PEDPYFNTLVRIMSTRCMMAAQYFYSGAY-SYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQ  616 (760)
T ss_dssp             SCHHHHHHHHHTCCB--TTBTTHHHHHHHHHHTTSCCCEEEEGGGS-CGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhC--CchHHHHHHHHHHHHHhhhCccccccCcC-CCCCCCceecCCCceeccCchHhhhHHHHHHHH
Confidence            888888888876543  24455556777788999999999999876 678999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhccCCCCCCccccccccccccccccchhhhhhhhhHHHHHhhhcCCCchhHHHHHHHHHHHhhHHH
Q 002070          856 LNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLAC  935 (973)
Q Consensus       856 L~a~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~ia~~cNerk~~A  935 (973)
                      |+++|..++...                        |                      ....+.|..+|.|||+|++.|
T Consensus       617 L~~~l~~~~~~~------------------------~----------------------~~~~~~l~~~~~~~s~~er~A  650 (760)
T 2vnu_D          617 LAGAIGYEPLSL------------------------T----------------------HRDKNKMDMICRNINRKHRNA  650 (760)
T ss_dssp             HHHHTTSSCCCG------------------------G----------------------GGCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCCcc------------------------c----------------------ccCHHHHHHHHHHhhHHHHHH
Confidence            999997542100                        0                      002367899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccEeeCeEEEEEEeeeee
Q 002070          936 RNVKDACVKLYMWILLKKKEVLFSCLILYLTSFSTIH  972 (973)
Q Consensus       936 r~a~~~~~~l~~~~~~k~~~~~~~~~iv~~~s~g~~~  972 (973)
                      +.|++++.++|+|.||+.....+.+.|+.++.||+|.
T Consensus       651 ~~aer~~~~~~~~~~l~~~~~~~~g~V~~V~~~G~fV  687 (760)
T 2vnu_D          651 QFAGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVV  687 (760)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSEEEEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHHhhcCceEEEEEEEEEECCeEEE
Confidence            9999999999999999998766666666799999984
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A Back     alignment and structure
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A Back     alignment and structure
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 973
d2vnud4416 b.40.4.16 (D:495-910) Exosome complex exonuclease 7e-79
d2ix0a4385 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Esch 1e-68
d2r7da2401 b.40.4.16 (A:3-403) Ribonuclease II family protein 2e-45
d2vnud3148 b.40.4.5 (D:252-399) Exosome complex exonuclease R 4e-21
d2vnud195 b.40.4.5 (D:400-494) Exosome complex exonuclease R 5e-10
>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 416 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RNB domain-like
domain: Exosome complex exonuclease RRP44
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  261 bits (667), Expect = 7e-79
 Identities = 147/400 (36%), Positives = 207/400 (51%), Gaps = 37/400 (9%)

Query: 486 FSPESLSCLPCV--PWEVPQE-----------ELLSRKDLRNFCIFTIDPSTATDLDDAL 532
           FS + L CLP     W+ P +            L  RKDLR+  I +IDP    D++DAL
Sbjct: 1   FSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDAL 60

Query: 533 SIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGS 592
             ++L +G   VGVHIADV++FV PGTALD E   R TSVY++ ++I MLP+LL  ++ S
Sbjct: 61  HAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCS 120

Query: 593 LNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLG 652
           L P VDR AFS+ W+L+ + ++V+    ++VIRS    SYE AQ  I             
Sbjct: 121 LKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRI------------- 167

Query: 653 EGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDS 711
                   + +  ++   +++L ++S  LK KR   GAL L + +     D E   P + 
Sbjct: 168 ------DDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEV 221

Query: 712 VLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHG- 770
            +      N L EEFMLLAN + A  I  AFP +A+LRRH AP            +    
Sbjct: 222 EIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKN 281

Query: 771 LQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHY 830
           + +   SS     SL++  +   +D     ++   +TR M  A YF SG +    D+ HY
Sbjct: 282 MSISLESSKALADSLDRCVD--PEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYP-DFRHY 338

Query: 831 ALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHR 870
            LA  +YTHFTSP+RRY D+V HR L  A+  E L   HR
Sbjct: 339 GLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHR 378
>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Length = 385 Back     information, alignment and structure
>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} Length = 401 Back     information, alignment and structure
>d2vnud3 b.40.4.5 (D:252-399) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 148 Back     information, alignment and structure
>d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query973
d2vnud4416 Exosome complex exonuclease RRP44 {Saccharomyces c 100.0
d2ix0a4385 Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 100.0
d2r7da2401 Ribonuclease II family protein DR0020 {Deinococcus 100.0
d2vnud3148 Exosome complex exonuclease RRP44 {Saccharomyces c 99.95
d2vnud195 Exosome complex exonuclease RRP44 {Saccharomyces c 99.45
d2ix0a190 Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 98.95
d2ix0a279 Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 97.65
d2ix0a190 Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 84.21
>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RNB domain-like
domain: Exosome complex exonuclease RRP44
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=9.4e-85  Score=745.54  Aligned_cols=401  Identities=37%  Similarity=0.590  Sum_probs=354.3

Q ss_pred             CChhhhccCCCC--CCCCCh-----------hhhccCccCCCceEEEEcCCCCCCCCceEEEEEcCCceEEEEEEEcccc
Q 002070          486 FSPESLSCLPCV--PWEVPQ-----------EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVS  552 (973)
Q Consensus       486 Fs~~vl~~l~~~--~~~i~~-----------~e~~~R~DLr~l~vfTIDp~~AkDlDDAlSie~l~~G~~~lgVHIADVS  552 (973)
                      ||++||+|+|..  +|.++.           .+.++|+|||++++|||||++|+|+||||||+++++|+|+|||||||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~Dl~~l~~~tID~~~a~d~DDAisi~~~~~g~~~l~VHIADva   80 (416)
T d2vnud4           1 FSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVT   80 (416)
T ss_dssp             CCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEEEEEECTTSCEEEEEEEECHH
T ss_pred             CCHHHHhhcccccCcccCchhhhhhhhccCchhhcCCccCCCCCEEEEcCCCCccccceEEEEEeCCCcEEEEEEEccHH
Confidence            889999999875  677653           3456899999999999999999999999999999999999999999999


Q ss_pred             ccccCCCHhhHHHHhccceeecCCCcccCCChhhhhcccCCCCCCceEEEEEEEEEcCCCCEEEEEEEEEEEecCcccCH
Q 002070          553 YFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSY  632 (973)
Q Consensus       553 ~fV~~gS~LD~eA~~RgtSvYLp~rvipMLP~~Ls~~lcSL~pg~dRlA~Sv~~~id~~G~i~~~~f~~SvIrS~~rLTY  632 (973)
                      +||++||+||++|++||||+|||++++||||+.|++++|||.||++|+||||.+.+|.+|+|.+++|++|+|++.++|||
T Consensus        81 ~~v~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~ls~~~~SL~~~~~r~a~s~~~~~~~~g~i~~~~~~~s~I~~~~~ltY  160 (416)
T d2vnud4          81 HFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSY  160 (416)
T ss_dssp             HHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEEEEEEBSEEEEH
T ss_pred             HhhCCCCHHHHHHHHhCeeEeCCCCccccCCHHHhhhhhcccCCcceeeEEeeeeeccccccccceeehhhhccccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCccccCcCCCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCCceeeeCC-CCCeeEE
Q 002070          633 EHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDE-YGTPYDS  711 (973)
Q Consensus       633 e~vq~iL~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~L~~L~~lA~~Lr~~R~~~Gal~l~~~e~~~~lDe-~g~p~~~  711 (973)
                      ++|+++|++...                   ..++...|..|+++|+.|+++|.++|+|.++.++..+.+|. +|.+..+
T Consensus       161 ~ev~~~l~~~~~-------------------~~~~~~~l~~L~~~a~~l~~~R~~~g~l~~~~~~~~~~~d~~~~~~~~~  221 (416)
T d2vnud4         161 EQAQLRIDDKTQ-------------------NDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEV  221 (416)
T ss_dssp             HHHHHHHHCTTC-------------------CCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEECSSSSCEEEE
T ss_pred             hhHHHHhccccc-------------------cccchhHHHHHHHHHHHHHHHHHhcCCcccCCCceEEEecccccccccc
Confidence            999999987421                   13466889999999999999999999999999999999984 5667677


Q ss_pred             EeccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEeCCCCChHHHHHHHHHHHH-cCCccCCCChhHHHHHHHHHHH
Q 002070          712 VLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSK-HGLQLDTSSSGQFHQSLEQARE  790 (973)
Q Consensus       712 ~~~~~~~s~~LIEEfMllAN~~VA~~l~~~~~~~allR~H~~P~~~kl~~l~~~~~~-~G~~ld~~~s~~l~~sL~~i~~  790 (973)
                      ....+..||.|||||||+||.+||+++.++++.+++||+|+.|+.++++.|.+++.. .|+.++.++...+...|..+.+
T Consensus       222 ~~~~~~~s~~lVeE~Mi~AN~~vA~~l~~~~~~~~~~R~h~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~  301 (416)
T d2vnud4         222 EIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVD  301 (416)
T ss_dssp             EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCB
T ss_pred             ceeecccchhhHHHHhhhhhHHHHHHHHHhCCCCCccceeCCCCHHHHHHHHHHHHHhcccCcCccchhhHHHHHHHHhC
Confidence            778889999999999999999999999988899999999999999999988887753 4666777777778777776644


Q ss_pred             hhcCCHHHHHHHHHHHcccccCceecccCCCCCCCCcccccccCCCccccccccCchhhHHHHHHHHHHHHhhhhhhhhh
Q 002070          791 KLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHR  870 (973)
Q Consensus       791 ~~~~~~~~~~~L~~~~lr~m~~A~Y~~sg~~~s~~~~~HfgL~~~~YTHFTSPIRRYaDLiVHR~L~a~L~~~~~~~~~~  870 (973)
                      .  .++.....+...++|+|.+|.|+..+.+ +..+.+|||||++.|||||||||||+||+|||||+++|.+++....  
T Consensus       302 ~--~~~~~~~~i~~~~~~~~~~a~~~~~~~~-s~~~~~H~gLgl~~YthfTSPIRRY~DLv~hrqL~a~l~~~~~~~~--  376 (416)
T d2vnud4         302 P--EDPYFNTLVRIMSTRCMMAAQYFYSGAY-SYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLT--  376 (416)
T ss_dssp             T--TBTTHHHHHHHHHHTTSCCCEEEEGGGS-CGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGG--
T ss_pred             c--cCchHHHHHHHHHHHHHHHHHhhccccC-CCCccCcHhhCcccccccCcHHhhHHHHHHHHHHHHHHcCCCCCCC--
Confidence            2  2334456677788899999999887765 5688999999999999999999999999999999999986542100  


Q ss_pred             ccCCCCCCccccccccccccccccchhhhhhhhhHHHHHhhhcCCCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002070          871 RMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWIL  950 (973)
Q Consensus       871 ~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~ia~~cNerk~~Ar~a~~~~~~l~~~~~  950 (973)
                                                .                  .+.+.|..+|.|||++++.|++|||++.++|+|.|
T Consensus       377 --------------------------~------------------~~~e~l~~i~~~~~~~e~~a~~aer~~~~~~~~~~  412 (416)
T d2vnud4         377 --------------------------H------------------RDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQV  412 (416)
T ss_dssp             --------------------------G------------------GCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------h------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                      0                  01367899999999999999999999999999999


Q ss_pred             HHhc
Q 002070          951 LKKK  954 (973)
Q Consensus       951 ~k~~  954 (973)
                      ||++
T Consensus       413 lk~~  416 (416)
T d2vnud4         413 MRNN  416 (416)
T ss_dssp             HHTC
T ss_pred             HhCC
Confidence            9873
>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2vnud3 b.40.4.5 (D:252-399) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2ix0a1 b.40.4.5 (A:83-172) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ix0a1 b.40.4.5 (A:83-172) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure