Citrus Sinensis ID: 002076

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970--
MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYECSRL
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHEEEccccccHHHHHHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHcccccHHHHcHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccHHHHHHHHHHHcccHHHHcccEEEEEEcccccccccccccccHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccHHHHHHHHccccccccHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHccccccccccccccccccccccc
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHcccccccccccHHHHHHHHHHHHHEEEEEccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEccHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEcccccEEEEccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccHHHHHHHHHHHcccHHHHHcEEEEEEccccccccccccccHHHHHHHHHHHHHHcccccccEEEccccEEEcccccccHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccHHHHHcccHHHHHHHHHHHcccccccccccEcEEccccccccccEEccccHHHcEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHcccccccHHHHHHHcccccccccccHHHHHHHHHHHHccHHHHHHHHHHHccccccccccHHHcccc
mffsgdpttrkrvdlggrsskerDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIqnvnrqcfgpqsaFFRQLFFFfnarnvsdISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDqlfvtpeesntpptLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIphigqkpcicpnidprwsffsqiltipflwHLFPYIKEvfatgrtsqHYIHQMALCVQNhanvlphevsmelpgYACLLGNILETagvalsqpdcsfemGVDLAAITTFLLkalppikssressmvsdddmtagdevmepvINRDLEKQITSAIDSRFLLQLTNVLFSgfhllrgphdegpgdkeVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCheirkwpflpylsgdapgwllplavfcpvykhmltivdneefyeqekplslkDIRHLIVILREALWHLLwlnptshpnvgksvsspppankmlpaeAIQHRVSTVASEVLSQLQDwnnrrefvppsdfhadgvndffisqatidgtraneilkqapflvpftSRAKIFQSQLASVRqrhgshgvftrsrfRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNElgveeagidgggiFKDFMENITRAAFDVQYGlfketsdhllypnpgsgmiheQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNylndlpsldpeLYRHLIFLKHYEADISELELYFVILNNeygeqteeellpggknirvtNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLIsgsldsldfddlrqntnyvggyhSVSCFSVILILLIEhtsgkcmgvnCSLISWNITLSMNSFYECSRL
mffsgdpttrkrvdlggrsskerdrqklleqtrlernrrlylrrqnhaaikiqkcfrgkkAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTpeesntpptLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKAlppikssressmvsdddmtagDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLasvrqrhgshgvftrsrfrirrDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYECSRL
MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTrlernrrlylrrQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAffrqlffffNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHElqllisgsldsldfddlRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYECSRL
**************************************RLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVT******PPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKAL***************************INRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHD****DKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNP*******************************VASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYS********DLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYEC***
MFF********************************************AAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVT***************SLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQN************LPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKA************************************ITSAIDSRFLLQLTNVLFSGFHL**************AAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRC****************PGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTS***************************STVASEVLSQLQDWNNRREFVPPSDFHADGVND******************QAPFLVPFTSRAKIFQSQLA****************FRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYECS**
************************RQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIK*************TAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHP**********PANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQS************GVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYECSRL
*************************QKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPI*********************EPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYEC**L
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSLISWNITLSMNSFYECSRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query972 2.2.26 [Sep-21-2011]
Q8RWB81029 E3 ubiquitin-protein liga yes no 0.949 0.896 0.704 0.0
Q80U951083 Ubiquitin-protein ligase yes no 0.912 0.819 0.279 6e-76
Q7Z3V41068 Ubiquitin-protein ligase yes no 0.479 0.436 0.342 1e-75
Q08CZ01072 Ubiquitin-protein ligase yes no 0.495 0.449 0.337 2e-75
Q9ES341070 Ubiquitin-protein ligase no no 0.479 0.435 0.338 7e-75
Q153861083 Ubiquitin-protein ligase no no 0.911 0.818 0.275 1e-74
Q9SCQ21142 E3 ubiquitin-protein liga no no 0.429 0.365 0.337 9e-68
Q1K9C41029 Probable E3 ubiquitin pro yes no 0.426 0.403 0.350 3e-66
Q8GY233681 E3 ubiquitin-protein liga no no 0.289 0.076 0.370 2e-44
Q8H0T43658 E3 ubiquitin-protein liga no no 0.289 0.076 0.367 6e-44
>sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1 Back     alignment and function desciption
 Score = 1377 bits (3564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/934 (70%), Positives = 763/934 (81%), Gaps = 11/934 (1%)

Query: 1   MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKK 60
           MFFSGDP+TRKRVDLGGRS+KERD +KLLEQTR+ERNRRL  ++QN AA+KIQK FRG++
Sbjct: 1   MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query: 61  AMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRL 120
           +M IE SKVR  F  TYG + QNV+R CF P S+F RQ  FFF A+N  D  +LVETCRL
Sbjct: 61  SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query: 121 MKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEES 180
           ++ FV  SGD+V LF+G+DYSS+  LVDFRVKK AF CI+A+HQNR  L+DQL VTPEE+
Sbjct: 121 LQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEA 180

Query: 181 NTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISS 240
           +    +L+EAV  L+D +LPW CK+VSYL +R VF L+RE++ T KES    +  G I S
Sbjct: 181 SISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMTGNILS 240

Query: 241 LERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIH 300
           LERVL LI+PHIG++PC C  +DPRWSF S ILTIP +W LFP +K VFA    SQHYIH
Sbjct: 241 LERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLFPNLKVVFANPSLSQHYIH 300

Query: 301 QMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLL 360
           QMA C+Q    VLP E S E PGYACLLGN L+TA V LSQP+CS +M +D+A + TF L
Sbjct: 301 QMASCIQKDTCVLPMETSPEFPGYACLLGNTLDTANVVLSQPECSLDMAIDIALVATFFL 360

Query: 361 KALPPIKSSRESSM--VSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSG 418
           + LPP+KSS   S    SD+D    D+V   V+N+ LE+QIT+AIDSRFLLQLTNVLF  
Sbjct: 361 ETLPPVKSSEGESRQGSSDEDDMLIDDVPGLVLNKALEQQITNAIDSRFLLQLTNVLFRQ 420

Query: 419 FHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRC 478
             L    +DE   DKE  A+G A +FL+ AFNTLPLE IMT+LAYRTELV +LW+YMKRC
Sbjct: 421 VSLGMQSYDE---DKEALAIGTASSFLYAAFNTLPLERIMTILAYRTELVAVLWNYMKRC 477

Query: 479 HEIRKWPFLP----YLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRH 534
           HE +KW  +P    YL GDAPGWLLPL VFCPVYKHML IVDNEEFYE+EKPLSL+DIR 
Sbjct: 478 HENQKWSSMPKLLAYLPGDAPGWLLPLVVFCPVYKHMLMIVDNEEFYEREKPLSLQDIRL 537

Query: 535 LIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDW 594
           LI+IL++ALW LLW+NP + PN GKSVS+    +K  P E IQ+R+  V SE+LSQLQDW
Sbjct: 538 LIIILKQALWQLLWVNPLTQPNTGKSVSND--LSKKNPIELIQNRMGIVVSELLSQLQDW 595

Query: 595 NNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVR 654
           NNR++F   SDF AD VN++FISQA ++GTRAN IL QAPFL+PFTSR KIF +QLA+ R
Sbjct: 596 NNRKQFTSSSDFQADSVNEYFISQAIMEGTRANYILMQAPFLIPFTSRVKIFTTQLATAR 655

Query: 655 QRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGG 714
           Q HGS G+F R+RFRIRRDHILEDAY+QMS +SE+DLR +IRVTFVNELGVEEAGIDGGG
Sbjct: 656 QSHGSQGIFARNRFRIRRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAGIDGGG 715

Query: 715 IFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEG 774
           IFKDFME ITRAAFDVQYGLFKET+DH+LYPNPGSGMIHEQHLQFFHFLG LLAKAMFEG
Sbjct: 716 IFKDFMEKITRAAFDVQYGLFKETADHMLYPNPGSGMIHEQHLQFFHFLGSLLAKAMFEG 775

Query: 775 ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEY 834
           ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLK Y+ DIS+LELYFVILNNEY
Sbjct: 776 ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKRYKGDISDLELYFVILNNEY 835

Query: 835 GEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDM 894
           GE+TEEELLPGG+++RVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLI K+WIDM
Sbjct: 836 GERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDM 895

Query: 895 FNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHS 928
           FNEHELQ+LISGS+DSLD DDLR NTNY GGYH+
Sbjct: 896 FNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHA 929
Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q80U95|UBE3C_MOUSE Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2 Back     alignment and function description
>sp|Q7Z3V4|UBE3B_HUMAN Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=3 Back     alignment and function description
>sp|Q08CZ0|UBE3B_XENTR Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1 Back     alignment and function description
>sp|Q9ES34|UBE3B_MOUSE Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3 Back     alignment and function description
>sp|Q15386|UBE3C_HUMAN Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3 Back     alignment and function description
>sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1 Back     alignment and function description
>sp|Q1K9C4|YFK7_SCHPO Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC167.07c PE=2 SV=1 Back     alignment and function description
>sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3 Back     alignment and function description
>sp|Q8H0T4|UPL2_ARATH E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query972
3594770931034 PREDICTED: E3 ubiquitin-protein ligase U 0.949 0.892 0.744 0.0
3594770951016 PREDICTED: E3 ubiquitin-protein ligase U 0.935 0.894 0.737 0.0
2241088021027 predicted protein [Populus trichocarpa] 0.948 0.897 0.737 0.0
2555564921067 ubiquitin-protein ligase, putative [Rici 0.950 0.865 0.750 0.0
3565559691031 PREDICTED: E3 ubiquitin-protein ligase U 0.949 0.895 0.717 0.0
2978303421029 hypothetical protein ARALYDRAFT_479191 [ 0.949 0.896 0.710 0.0
3565217191026 PREDICTED: E3 ubiquitin-protein ligase U 0.950 0.900 0.712 0.0
794052971029 E3 ubiquitin-protein ligase UPL6 [Arabid 0.949 0.896 0.704 0.0
1865101631015 E3 ubiquitin-protein ligase UPL6 [Arabid 0.937 0.897 0.700 0.0
3565649801026 PREDICTED: E3 ubiquitin-protein ligase U 0.950 0.900 0.707 0.0
>gi|359477093|ref|XP_003631936.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Vitis vinifera] gi|296083205|emb|CBI22841.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1467 bits (3799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 699/939 (74%), Positives = 802/939 (85%), Gaps = 16/939 (1%)

Query: 1   MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKK 60
           MFFSGD +TRKRVDLGGRSSKERDRQKLLEQTRLERNRR +LR+QN AA++IQKCFRG+K
Sbjct: 1   MFFSGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRWWLRQQNSAALRIQKCFRGRK 60

Query: 61  AMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRL 120
           A+E EH+KVREQFF TYGRH QNV+R  FGP S F RQL FFF+ARNV D S LVETCRL
Sbjct: 61  AVEAEHAKVREQFFTTYGRHCQNVDRHSFGPDSEFLRQLLFFFDARNVGDFSALVETCRL 120

Query: 121 MKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEES 180
           +++FV++SGD V LFAG+DYSSK ALVD+RVK+ A+ACIQAVHQNR + K QL +T +E 
Sbjct: 121 LQNFVRDSGDAVNLFAGMDYSSKNALVDYRVKQLAYACIQAVHQNRNQFKGQLLMTSDEP 180

Query: 181 NTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISS 240
           ++P  LLLEAVV L+DS+LPW CK+V +LL+RN ++LLRE+++T KES+E +S+ GR+ S
Sbjct: 181 SSPTILLLEAVVMLLDSKLPWVCKIVGHLLQRNTYSLLREIVLTAKESVETYST-GRVPS 239

Query: 241 LERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIH 300
           LE +LT++I H+GQ  CICP IDPRWSF SQILTIPFLW LFPY+KEVF     S+HYIH
Sbjct: 240 LECLLTILISHVGQNHCICPIIDPRWSFSSQILTIPFLWALFPYLKEVFMRRGLSEHYIH 299

Query: 301 QMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLL 360
           QMALCVQNH NVLP ++S + PGYACLLGNILETA V  SQPDCS +M +D+AA+ TFLL
Sbjct: 300 QMALCVQNHTNVLPDDISADFPGYACLLGNILETASVFFSQPDCSLDMAIDIAAVMTFLL 359

Query: 361 KALPPIKSS----RESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLF 416
           +ALPP+KSS    +E+S   +D+M  GDE+ME V++RDLE+QI++AID RFLLQLTN LF
Sbjct: 360 QALPPMKSSNRESKENSSGGEDEMAVGDEIMEKVVSRDLEQQISNAIDPRFLLQLTNALF 419

Query: 417 SGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMK 476
            G  L+    +EGP D+EVAA+GAACAFLHV FN LPLE IMTVLAYRTELV LLW ++K
Sbjct: 420 GGISLINHLCEEGPDDREVAAIGAACAFLHVTFNILPLERIMTVLAYRTELVPLLWKFIK 479

Query: 477 RCHEIRKWPFL----PYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDI 532
           RCHE +KW  L     YLSGD PGW LPLAVFCPVYKHMLTIVDNEEFYEQEKPLSL DI
Sbjct: 480 RCHENQKWSSLSEQLAYLSGDMPGWQLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLSDI 539

Query: 533 RHLIVILREALWHLLWLNPTSHPNVGKSVSSPPP---ANKMLPAEAIQHRVSTVASEVLS 589
           R LIVILR+ALW LLW+NP   PN+ K    P P   +++  P E  Q RVS V +E+LS
Sbjct: 540 RCLIVILRQALWQLLWVNPAMPPNLMK----PAPEVTSHRGHPIEFTQQRVSIVTAELLS 595

Query: 590 QLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQ 649
           QLQDWNNRR+F PPS FHAD VN++FISQA I+ TRA  ILKQAPFLVPFTSR KIF SQ
Sbjct: 596 QLQDWNNRRQFAPPSYFHADAVNEYFISQAVIENTRAYTILKQAPFLVPFTSRVKIFTSQ 655

Query: 650 LASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAG 709
           LA+ RQR GSH VFTR+RFRIRRDHILEDA++Q+S +SE+DLRG IR++FVNE GVEEAG
Sbjct: 656 LAAARQRDGSHSVFTRNRFRIRRDHILEDAFNQLSVLSEDDLRGLIRISFVNEFGVEEAG 715

Query: 710 IDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAK 769
           IDGGGIFKDFMENITRAAFDVQYGLFKET+DHLLYPNPGSGMIHEQHLQFFHFLG +L K
Sbjct: 716 IDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTVLGK 775

Query: 770 AMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVI 829
           AMFEGILVDIPFATFFLSKLKQK+NYLNDLPSLDPELYRHLIFLKH+E D+SELELYFVI
Sbjct: 776 AMFEGILVDIPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHFEGDLSELELYFVI 835

Query: 830 LNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQK 889
           +NNEYGEQTEEELLPGGKNIRVTNENVITFIHL++NHRLNFQIRQQS+HFLRGFQQLIQ+
Sbjct: 836 VNNEYGEQTEEELLPGGKNIRVTNENVITFIHLIANHRLNFQIRQQSTHFLRGFQQLIQR 895

Query: 890 DWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHS 928
           DWI+MF+EHELQLLISGSLD LD DDLR NTNY GGYHS
Sbjct: 896 DWIEMFDEHELQLLISGSLDGLDVDDLRSNTNYAGGYHS 934

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359477095|ref|XP_003631937.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224108802|ref|XP_002314972.1| predicted protein [Populus trichocarpa] gi|222864012|gb|EEF01143.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556492|ref|XP_002519280.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223541595|gb|EEF43144.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356555969|ref|XP_003546300.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like [Glycine max] Back     alignment and taxonomy information
>gi|297830342|ref|XP_002883053.1| hypothetical protein ARALYDRAFT_479191 [Arabidopsis lyrata subsp. lyrata] gi|297328893|gb|EFH59312.1| hypothetical protein ARALYDRAFT_479191 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356521719|ref|XP_003529499.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|79405297|ref|NP_188346.2| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|334185408|ref|NP_001189915.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|75247591|sp|Q8RWB8.1|UPL6_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL6; Short=Ubiquitin-protein ligase 6 gi|20260606|gb|AAM13201.1| unknown protein [Arabidopsis thaliana] gi|37202000|gb|AAQ89615.1| At3g17205 [Arabidopsis thaliana] gi|332642397|gb|AEE75918.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|332642399|gb|AEE75920.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186510163|ref|NP_001118648.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|332642398|gb|AEE75919.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356564980|ref|XP_003550723.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query972
TAIR|locus:20879391029 UPL6 "AT3G17205" [Arabidopsis 0.949 0.896 0.675 0.0
UNIPROTKB|Q5W7241030 OSJNBa0017J22.6 "Os05g0159000 0.949 0.896 0.570 3e-282
ZFIN|ZDB-GENE-060526-2311069 ube3b "ubiquitin protein ligas 0.486 0.442 0.328 5.1e-66
UNIPROTKB|E1BZA81086 UBE3C "Uncharacterized protein 0.315 0.282 0.418 5.9e-65
UNIPROTKB|F1NZJ61084 UBE3C "Uncharacterized protein 0.315 0.283 0.418 7.3e-65
MGI|MGI:18912951070 Ube3b "ubiquitin protein ligas 0.486 0.442 0.329 2.5e-64
UNIPROTKB|F1RGB91069 UBE3B "Uncharacterized protein 0.486 0.442 0.331 1.9e-63
UNIPROTKB|E1BCU11068 UBE3B "Uncharacterized protein 0.486 0.442 0.329 3.1e-63
UNIPROTKB|Q7Z3V41068 UBE3B "Ubiquitin-protein ligas 0.486 0.442 0.333 4e-63
UNIPROTKB|E2QUU31073 UBE3B "Uncharacterized protein 0.486 0.440 0.331 6.5e-63
TAIR|locus:2087939 UPL6 "AT3G17205" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3279 (1159.3 bits), Expect = 0., P = 0.
 Identities = 631/934 (67%), Positives = 731/934 (78%)

Query:     1 MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTXXXXXXXXXXXXQNHAAIKIQKCFRGKK 60
             MFFSGDP+TRKRVDLGGRS+KERD +KLLEQT            QN AA+KIQK FRG++
Sbjct:     1 MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query:    61 AMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAXXXXXXXXXNARNVSDISVLVETCRL 120
             +M IE SKVR  F  TYG + QNV+R CF P S+          A+N  D  +LVETCRL
Sbjct:    61 SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query:   121 MKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEES 180
             ++ FV  SGD+V LF+G+DYSS+  LVDFRVKK AF CI+A+HQNR  L+DQL VTPEE+
Sbjct:   121 LQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEA 180

Query:   181 NTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISS 240
             +    +L+EAV  L+D +LPW CK+VSYL +R VF L+RE++ T KES    +  G I S
Sbjct:   181 SISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMTGNILS 240

Query:   241 LERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIH 300
             LERVL LI+PHIG++PC C  +DPRWSF S ILTIP +W LFP +K VFA    SQHYIH
Sbjct:   241 LERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLFPNLKVVFANPSLSQHYIH 300

Query:   301 QMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLL 360
             QMA C+Q    VLP E S E PGYACLLGN L+TA V LSQP+CS +M +D+A + TF L
Sbjct:   301 QMASCIQKDTCVLPMETSPEFPGYACLLGNTLDTANVVLSQPECSLDMAIDIALVATFFL 360

Query:   361 KALPPIKSSRESSMV--SDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSG 418
             + LPP+KSS   S    SD+D    D+V   V+N+ LE+QIT+AIDSRFLLQLTNVLF  
Sbjct:   361 ETLPPVKSSEGESRQGSSDEDDMLIDDVPGLVLNKALEQQITNAIDSRFLLQLTNVLFRQ 420

Query:   419 FHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRC 478
               L    +DE   DKE  A+G A +FL+ AFNTLPLE IMT+LAYRTELV +LW+YMKRC
Sbjct:   421 VSLGMQSYDE---DKEALAIGTASSFLYAAFNTLPLERIMTILAYRTELVAVLWNYMKRC 477

Query:   479 HEIRKWPFLP----YLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRH 534
             HE +KW  +P    YL GDAPGWLLPL VFCPVYKHML IVDNEEFYE+EKPLSL+DIR 
Sbjct:   478 HENQKWSSMPKLLAYLPGDAPGWLLPLVVFCPVYKHMLMIVDNEEFYEREKPLSLQDIRL 537

Query:   535 LIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDW 594
             LI+IL++ALW LLW+NP + PN GKSVS+    +K  P E IQ+R+  V SE+LSQLQDW
Sbjct:   538 LIIILKQALWQLLWVNPLTQPNTGKSVSND--LSKKNPIELIQNRMGIVVSELLSQLQDW 595

Query:   595 NNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVR 654
             NNR++F   SDF AD VN++FISQA ++GTRAN IL QAPFL+PFTSR KIF +QLA+ R
Sbjct:   596 NNRKQFTSSSDFQADSVNEYFISQAIMEGTRANYILMQAPFLIPFTSRVKIFTTQLATAR 655

Query:   655 QRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGG 714
             Q HGS G+F R+RFRIRRDHILEDAY+QMS +SE+DLR +IRVTFVNELGVEEAGIDGGG
Sbjct:   656 QSHGSQGIFARNRFRIRRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAGIDGGG 715

Query:   715 IFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEG 774
             IFKDFME ITRAAFDVQYGLFKET+DH+LYPNPGSGMIHEQHLQFFHFLG LLAKAMFEG
Sbjct:   716 IFKDFMEKITRAAFDVQYGLFKETADHMLYPNPGSGMIHEQHLQFFHFLGSLLAKAMFEG 775

Query:   775 ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEY 834
             ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLK Y+ DIS+LELYFVILNNEY
Sbjct:   776 ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKRYKGDISDLELYFVILNNEY 835

Query:   835 GEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDM 894
             GE+TEEELLPGG+++RVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLI K+WIDM
Sbjct:   836 GERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDM 895

Query:   895 FNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHS 928
             FNEHE                 R NTNY GGYH+
Sbjct:   896 FNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHA 929
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IBA
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA;ISS
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA
GO:0000151 "ubiquitin ligase complex" evidence=ISS
GO:0016567 "protein ubiquitination" evidence=ISS
UNIPROTKB|Q5W724 OSJNBa0017J22.6 "Os05g0159000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060526-231 ube3b "ubiquitin protein ligase E3B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZA8 UBE3C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZJ6 UBE3C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1891295 Ube3b "ubiquitin protein ligase E3B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RGB9 UBE3B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCU1 UBE3B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z3V4 UBE3B "Ubiquitin-protein ligase E3B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUU3 UBE3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWB8UPL6_ARATH6, ., 3, ., 2, ., -0.70440.94950.8969yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query972
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 7e-98
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 4e-71
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 4e-63
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 1e-54
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information 
 Score =  311 bits (799), Expect = 7e-98
 Identities = 118/267 (44%), Positives = 162/267 (60%), Gaps = 10/267 (3%)

Query: 667 RFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRA 726
           +  +RRD ILEDA  Q+S +S  DL+  + V FV E      GID GG+ ++F   +++ 
Sbjct: 2   KITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGE-----EGIDAGGVTREFFTLVSKE 56

Query: 727 AFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 784
            F+  YGLF+ T D   LLYPNP S    E HL+ F FLG LL KA++EG L+D+PF+  
Sbjct: 57  LFNPSYGLFRYTPDDSGLLYPNPSSFA-DEDHLKLFRFLGRLLGKALYEGRLLDLPFSRA 115

Query: 785 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVI-LNNEYGEQTEEELL 843
           F  KL  K   L DL  LDPELY+ L  L   + D  +LEL F I L++ +G     EL 
Sbjct: 116 FYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLELTFTIELDSSFGGAVTVELK 175

Query: 844 PGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLL 903
           PGG++I VTNEN   ++ L  ++RLN  I +Q   F  GF ++I ++ + +F   EL+LL
Sbjct: 176 PGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELL 235

Query: 904 ISGSLDSLDFDDLRQNTNYVGGYHSVS 930
           I GS D +D +DL++NT Y GGY S S
Sbjct: 236 ICGSED-IDLEDLKKNTEYKGGYSSDS 261

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 972
KOG44271096 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG09421001 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG0941850 consensus E3 ubiquitin protein ligase [Posttransla 100.0
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 100.0
KOG0939720 consensus E3 ubiquitin-protein ligase/Putative ups 100.0
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
KOG0170621 consensus E3 ubiquitin protein ligase [Posttransla 100.0
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0940358 consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos 100.0
KOG09433015 consensus Predicted ubiquitin-protein ligase/hyper 99.96
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.63
smart0001526 IQ Short calmodulin-binding motif containing conse 97.04
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=7.3e-155  Score=1301.32  Aligned_cols=894  Identities=28%  Similarity=0.434  Sum_probs=743.6

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc---CCchhH
Q 002076           18 RSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQC---FGPQSA   94 (972)
Q Consensus        18 ~S~~e~~r~~lL~qar~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~efd~~~~~~~~~~~~~~---~~~~~~   94 (972)
                      .+..+++|++||+|+++|||+|+.+|||++||++||++||||++||+++.+|+++||.++..+....++..   ..|.-.
T Consensus         2 ~~~~q~sra~fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~I~~e~d~~f~~d~~d~~~~~erv~~~~l~   81 (1096)
T KOG4427|consen    2 FSSGQISRAAFLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRKKAQIEIQEEFDNLFSCDSVDLTKVLERVARPFLP   81 (1096)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHhhhHHH
Confidence            34445789999999999999999999999999999999999999999999999999999997764322211   122335


Q ss_pred             hhhhheeEEecccccchHHHHHHHHHHHHHhhhcCCccccccccccccchhh-HHHHHHHHHHHHHHHHHhhhhhhcccc
Q 002076           95 FFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRAL-VDFRVKKFAFACIQAVHQNRKELKDQL  173 (972)
Q Consensus        95 ~lR~llFf~~~~~~~D~~RL~~lC~~ll~s~~~~~~~~~~~~~~~~~~e~~~-~~~qiKkll~lC~~~L~~~~~~~~~~~  173 (972)
                      ++|.+++.++..++ |.+||+++||+|+.+|.++++.+.+||++++++|+.. |+.|||++++.|++.|.+++++..   
T Consensus        82 var~ll~q~r~ie~-~~e~~~~iCr~il~smds~n~~~~sfvsl~l~ke~sk~w~~qik~ils~c~~lL~eln~Er~---  157 (1096)
T KOG4427|consen   82 VARSLLVQHRKIEA-REERLEQICRKILLSMDSENDQKYSFVSLALGKEDSKTWICQIKRILSLCSFLLTELNPERI---  157 (1096)
T ss_pred             HHHHHHHHHHHHHh-HHHHHHHHHHHHHHhhcCCCCcceeeeeehhcccchHHHHHHHHHHHHHHHHHHHhcCHHHH---
Confidence            78888888887633 3799999999999999999999999999999999765 599999999999999997665333   


Q ss_pred             CCCCCCCCCchHHHHHHHHHhhcCCchhH------------------HHHHHHHHhcchHHHHHHHHHcCCCCccccccc
Q 002076          174 FVTPEESNTPPTLLLEAVVFLIDSRLPWT------------------CKVVSYLLERNVFTLLRELIVTGKESMEIHSSY  235 (972)
Q Consensus       174 ~~~~~~~~~~~~~~L~~l~~lt~~~~~w~------------------~~i~~yL~~~g~y~~Lr~ll~~~~~~~~~~~~~  235 (972)
                       .++.    ..+++|+++++|||+++ |+                  ++||||++|+|||+.+|.+|.++..+.++....
T Consensus       158 -ad~~----~~alll~~livfTdpks-Wkilrn~n~e~lqtamn~ic~~i~gh~~q~~~Ys~mr~~l~~~t~~~~~~l~~  231 (1096)
T KOG4427|consen  158 -ADSI----VNALLLHILIVFTDPKS-WKILRNENFEDLQTAMNIICQNIMGHLCQHGFYSAMRRYLKRGTKRTDPRLVI  231 (1096)
T ss_pred             -HHHH----HHHHHHHeeeEEeCCcc-eeehhccchhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCCCcceee
Confidence             2222    46899999999999999 87                  779999999999999999999999998884333


Q ss_pred             CCcchHHHHHHhhhhccccCCCcCCCCCCcc------hhhhhhccccchhhcch----hhHHHHhhcCCchhhHHHHHHH
Q 002076          236 GRISSLERVLTLIIPHIGQKPCICPNIDPRW------SFFSQILTIPFLWHLFP----YIKEVFATGRTSQHYIHQMALC  305 (972)
Q Consensus       236 ~~~~~l~~ll~l~~~~~~~~~~~~~~~~~~~------~f~~~IlsiP~l~~~lp----~~~~~~~~~~l~~~~~~~~~~~  305 (972)
                         .++.+.+++         +.+|++++++      .|.+.|||||+|..|+|    .+...+.++.+..+.++.    
T Consensus       232 ---~Tl~a~~sl---------~~rpvk~~nfsd~l~~~fv~~IltvPaLv~hL~~~~~q~le~~ss~~l~~K~l~~----  295 (1096)
T KOG4427|consen  232 ---TTLAATFSL---------RLRPVKQPNFSDNLVEEFVSLILTVPALVCHLPSALPQALEHLSSLMLLDKILNI----  295 (1096)
T ss_pred             ---eehhhhhhh---------ccccccCCchHHHHHHHHHHHHhchhHHHHhcchhhHHHHHHHHHHHHHHHHHHH----
Confidence               346666655         2456777776      59999999999988874    567777778888887764    


Q ss_pred             HhhhcccCCccccCCchhHHHHHHHHHHhhhhhccCCCCcccchhhHHHHHHHHHhhCCCcccc---cccCC--------
Q 002076          306 VQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSS---RESSM--------  374 (972)
Q Consensus       306 l~~~~~~~~~~~s~~~p~~~~lL~Nl~~l~~~~l~~~~~~~~~~~~~v~v~~~LL~~lp~~~~~---~~~~~--------  374 (972)
                      +.+.......+.+.++|+.+|+|||++++++  .++.+...+..-+++..++..|.+|-.++.+   +.+..        
T Consensus       296 l~d~~~~ee~~tsme~~~~l~llgNiv~la~--is~~~~e~~~~~~f~~~~~~sl~~~~e~tv~~~tk~~l~~wH~vlg~  373 (1096)
T KOG4427|consen  296 LRDMENSEEQSTSMEGPSVLWLLGNIVHLAT--ISETDLEDELESNFYVLYTHSLVTLAENTVSQVTKVGLTDWHPVLGW  373 (1096)
T ss_pred             HHhhHhHHHhhcCCcccHhHHHHhhhheeee--cCcccccccccccchhhhHHHHHHHHHHHhhcccccceeeeehhhcc
Confidence            3443333333557889999999999999996  3333333333335778888888888554433   12211        


Q ss_pred             CCCCCCcCCCCCccccchhhHHHHHHHHhhHHHHHHHHHHHhh----------------------------hhcccCC--
Q 002076          375 VSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFS----------------------------GFHLLRG--  424 (972)
Q Consensus       375 ~~~~dd~~~~~~~~~~~~~~l~~ql~~~~~~~~l~~l~~~l~~----------------------------~i~~~~~--  424 (972)
                      .+...|...++.+     ..+++|+.-+|+.+..|-+...+..                            .+++.+.  
T Consensus       374 ~s~~~ek~~n~~i-----~~v~~q~~mlw~~~likll~~dile~~~las~~~~~~sk~s~~~~l~Is~l~sr~lrk~~~~  448 (1096)
T KOG4427|consen  374 TSNETEKGNNVKI-----SLVEKQLPMLWQWRLIKLLFGDILEIRVLASKDASTSSKKSPETLLDISRLLSRALRKSCVM  448 (1096)
T ss_pred             ccCCCCCccchhH-----HHHHHHHHHHhhhhHHHHHhhhHHHhhhhccccccccCCCCCcchhHHHHHHHHHHHHhccc
Confidence            1233334444444     6799999999997444433332211                            1111000  


Q ss_pred             ---C-----------CCCCCCchhhhHHHHHHHHHHHhhhhchh--HHHHHHhhhhhhhHHHHHHHHHhhhcccCCC--C
Q 002076          425 ---P-----------HDEGPGDKEVAAVGAACAFLHVAFNTLPL--ECIMTVLAYRTELVQLLWHYMKRCHEIRKWP--F  486 (972)
Q Consensus       425 ---~-----------~~~~~~~~~~~~v~~~c~~~~~~l~~lp~--~~iL~~Laf~~~ll~~LW~~i~~~~~~~~~~--~  486 (972)
                         .           ++--.+++++..++.+|..|+++++|+.+  ..++++++|.+.+++++|.+|+..+++.+-.  +
T Consensus       449 ~~~l~~v~ss~~~~~~~k~~s~~~v~lv~~iC~~y~aslnTl~~mr~~iltgl~~~dnll~~lW~~i~e~G~~~G~~~gs  528 (1096)
T KOG4427|consen  449 GPVLGPVPSSNMLSFCPKWNSSAEVLLVENICTAYDASLNTLWQMRLPILTGLCYLDNLLVNLWVNILELGPSPGPQPGS  528 (1096)
T ss_pred             CCccCCCccchhhhccccccCcccceehhhhhhHHHhhhhhHHHhhhHHhhcchhhhhhHHHHHHHHHHhCCCCCCCCCc
Confidence               0           11113678899999999999999998875  5799999999999999999999988877622  1


Q ss_pred             C----------C---CCCCC---CCCcchhhhhhHHhHhHHhhhccchhhhccCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 002076          487 L----------P---YLSGD---APGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLN  550 (972)
Q Consensus       487 l----------~---~~~~~---~~~~l~pl~lfc~~~s~~L~ildd~ef~~~~~p~~l~~l~~l~~~Lk~~~~~~l~~~  550 (972)
                      -          +   .+.++   +....++|.+||++|.|+++|+||+|||++|.||+++++..++.+||.++|++||.+
T Consensus       529 ~~~~~~~k~~~ev~~~l~s~~~~sk~~tamL~LFcdc~ahlitILDd~e~yekq~pF~lee~~~i~s~lN~~vyk~i~~g  608 (1096)
T KOG4427|consen  529 GQVNESTKDVLEVETLLGSPTGISKPVTAMLMLFCDCYAHLITILDDIEFYEKQVPFKLEELVRIASFLNTFVYKGIWDG  608 (1096)
T ss_pred             cccchhHHHHHhHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcc
Confidence            0          1   11111   123667899999999999999999999999999999999999999999999999975


Q ss_pred             CCCCCCCCCccCCCCCCCCCCchHHhhhhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcc-hhhhhhhhccccchhHh
Q 002076          551 PTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVN-DFFISQATIDGTRANEI  629 (972)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~L~~~~~r~~f~p~~~f~~~~~~-~~~~~~~~~~~~~~~~i  629 (972)
                      ....+             +.     ...-++.+++++|..||+|||||+|+|+++|+++++. ..|....+....++..+
T Consensus       609 ~v~ea-------------k~-----~t~~lF~S~h~~l~vLYeRDcRr~Fta~d~WL~pevkPs~f~~e~ek~~~~a~ll  670 (1096)
T KOG4427|consen  609 TVPEA-------------KQ-----LTTGLFDSAHRLLHVLYERDCRRPFTASDHWLIPEVKPSAFAAELEKVLPTADLL  670 (1096)
T ss_pred             cchhh-------------hh-----HHHHHHHHHHHHHHHHHHhccCCCCCcchhhcCCCCChhHHHHHHHhhcccceeE
Confidence            33211             11     1122789999999999999999999999999998874 34444444455567788


Q ss_pred             hhcCCcccchhhhHHHHHHHHHHHHHhcCC----CCCccc-eeEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccC
Q 002076          630 LKQAPFLVPFTSRAKIFQSQLASVRQRHGS----HGVFTR-SRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELG  704 (972)
Q Consensus       630 l~~~Pfl~pf~~Rv~~f~~~~~~~~~~~~~----~~~~~~-~~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G  704 (972)
                      +.++|++||+++||.+|+.++.+++...+.    .....+ ..|+|||++|+||+|+||++.+...+|+.|+|+|+||+|
T Consensus       671 l~~mpHviP~edRv~lFR~fVqkdKa~~~lv~ts~a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrVkFVNeqG  750 (1096)
T KOG4427|consen  671 LTKMPHVIPHEDRVLLFREFVQKDKASRGLVETSDASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRVKFVNEQG  750 (1096)
T ss_pred             eccCCcccChHHHHHHHHHHHhhhHHhhcccccccCCccceeEEEEEcccchhhHHHHHHhccchhhhceEEEEEecccC
Confidence            999999999999999999999888754431    122223 589999999999999999999988999999999999999


Q ss_pred             cccccccCCCCcHHHHHHHHHHhhcccCCCceecC-CCceeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcH
Q 002076          705 VEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETS-DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFAT  783 (972)
Q Consensus       705 ~~E~GiD~GG~~rEf~~~l~~e~~~p~~glF~~~~-~~~l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~  783 (972)
                      ++|||||.||++|||++++.|..|||++|||.+|+ |+.+||+|.|+ ..++|+++|+|+|||+|||+|+|++||+||++
T Consensus       751 l~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~d~~LyPSPts~-~~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~  829 (1096)
T KOG4427|consen  751 LDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTSTDRRLYPSPTSY-HHENHLQLFEFVGRMLGKAVYEGIVVDVPFAS  829 (1096)
T ss_pred             CcccccCccchHHHHHHHHHHHHhcccccccccCCCCceecCCchhh-hhhchhHHHHHHHHHHHHHHhcceEEecccHH
Confidence            99999999999999999999999999999999998 89999999996 68999999999999999999999999999999


Q ss_pred             HHHHhhccCCC--CCCCccCCcHHHHHHHHHHHhhcCCcccceeeEEEEecccCcceeEeccCCCCccccChhhHHHHHH
Q 002076          784 FFLSKLKQKYN--YLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIH  861 (972)
Q Consensus       784 ~f~k~Llg~~~--~l~DL~~lDp~l~~sL~~l~~~~~dv~~l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~  861 (972)
                      +|+.+++|...  .+|+|.++|||+||||.++|+|+||+.||+|||+++++..|+..++||+|||++|+||++||.+|||
T Consensus       830 vflsqlLG~~~~s~~DELs~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH  909 (1096)
T KOG4427|consen  830 VFLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIH  909 (1096)
T ss_pred             HHHHHHhcccchhhhhhccccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHH
Confidence            99999999876  7999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHh
Q 002076          862 LVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIE  941 (972)
Q Consensus       862 ~~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~  941 (972)
                      .|++|++|+||++|+.||.+||.++|.|+||++|+|.|||+||+|++.+||++|||+||+|.|||+.+|++|+|||+|++
T Consensus       910 ~MA~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~  989 (1096)
T KOG4427|consen  910 AMAHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILA  989 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-CChhhhcccccCceEEecCCCCCCC
Q 002076          942 H-TSGKCMGVNCSLISWNITLSMNSFY  967 (972)
Q Consensus       942 ~-~s~ee~r~e~~~FL~FvTGs~~lP~  967 (972)
                      . |++|||.+    ||+|||-++|=|+
T Consensus       990 ~dFt~eERkl----fLKFVTSCSrpPl 1012 (1096)
T KOG4427|consen  990 GDFTPEERKL----FLKFVTSCSRPPL 1012 (1096)
T ss_pred             ccCChHHHHH----HHHHHhhcCCCcc
Confidence            7 99999888    9999999999885

>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription] Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query972
3jvz_C385 E2~ubiquitin-Hect Length = 385 4e-28
3jw0_C385 E2~ubiquitin-Hect Length = 385 5e-28
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 6e-28
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 9e-28
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 1e-27
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 2e-27
3tug_A398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 2e-27
1nd7_A374 Conformational Flexibility Underlies Ubiquitin Liga 4e-27
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 6e-24
3olm_A429 Structure And Function Of A Ubiquitin Binding Site 3e-23
1c4z_A358 Structure Of E6ap: Insights Into Ubiquitination Pat 6e-20
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure 
Iteration: 1

 Score =  123 bits (309), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 133/239 (55%), Gaps = 10/239 (4%)
Query: 664 TRSRFRIRRDHILEDAYSQMSTMSEED-LRGAIRVTFVNELGVEEAGIDGGGIFKDFMEN 722
            R   ++ R++I E++Y ++ ++   D L+  + + F +E      G+D GG+ +++   
Sbjct: 26  NRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESE-----KGLDYGGVAREWFFL 80
Query: 723 ITRAAFDVQYGLFK--ETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIP 780
           +++  F+  YGLF+   T ++ L  NP SG+ +E HL +F F+G +   A+F G L+D  
Sbjct: 81  LSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGF 140
Query: 781 FATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEE 840
           F   F   +  K   LND+ S+D E Y  L ++   E D +EL+L F I    +G+  + 
Sbjct: 141 FIRPFYKMMLGKQITLNDMESVDSEYYNSLKWI--LENDPTELDLMFCIDEENFGQTYQV 198
Query: 841 ELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHE 899
           +L P G  I VTNEN   +I LV   R   ++++Q + FL GF +L+  D I +F+E+E
Sbjct: 199 DLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENE 257
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query972
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 1e-115
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 1e-112
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 1e-107
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 1e-104
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 1e-104
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 3e-96
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
 Score =  358 bits (922), Expect = e-115
 Identities = 95/303 (31%), Positives = 151/303 (49%), Gaps = 15/303 (4%)

Query: 628 EILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMS 687
           E+L Q P +  F  + K F+ +L  + +      +       +RRDH+ ED+Y ++   S
Sbjct: 15  EVLFQGPHM-DFDVKRKYFRQELERLDEGLRKEDM----AVHVRRDHVFEDSYRELHRKS 69

Query: 688 EEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD--HLLYP 745
            E+++  + + F  E      G D GG+ +++   I+R  F+  Y LF+ +         
Sbjct: 70  PEEMKNRLYIVFEGE-----EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTI 124

Query: 746 NPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPE 805
           NP S   +  HL +F F+G ++AKA+++  L++  F   F   +  K     D+ S D  
Sbjct: 125 NPSSH-ANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYH 183

Query: 806 LYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSN 865
            Y+ L++L   +      +L F     E+G     +L P G NI VT EN   ++HLV  
Sbjct: 184 FYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQ 243

Query: 866 HRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGG 925
            R+   IR+Q + FL GF ++I K  I +F E EL+LLISG    +D DDL+ NT Y   
Sbjct: 244 MRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPT-IDIDDLKSNTEY-HK 301

Query: 926 YHS 928
           Y S
Sbjct: 302 YQS 304
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query972
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 100.0
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 100.0
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 100.0
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 100.0
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 100.0
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 100.0
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 99.5
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 96.84
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 96.35
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 95.81
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 95.7
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 95.31
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 95.12
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 93.55
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 83.65
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 82.52
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 82.44
4dck_A168 Sodium channel protein type 5 subunit alpha; IQ-mo 82.26
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 82.17
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
Probab=100.00  E-value=3.2e-74  Score=655.18  Aligned_cols=324  Identities=30%  Similarity=0.499  Sum_probs=293.1

Q ss_pred             hHhhhcCCcccchhhhHHHHHHHHHHHHHhcCCCCCccceeEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccCcc
Q 002076          627 NEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVE  706 (972)
Q Consensus       627 ~~il~~~Pfl~pf~~Rv~~f~~~~~~~~~~~~~~~~~~~~~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~  706 (972)
                      ...+..-|+ ++|+.|+++|+.++.+.+...    .....+++|||++|++||++++...++.++|++|+|+|+|     
T Consensus        14 ~~~~~~~~~-~~f~~k~~~F~~~l~~~~~~~----~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g-----   83 (405)
T 3h1d_A           14 LEVLFQGPH-MDFDVKRKYFRQELERLDEGL----RKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEG-----   83 (405)
T ss_dssp             CGGGGCSTT-SCHHHHHHHHHHHHHHHTTTC----CCCEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEEEETT-----
T ss_pred             hHHhhcCCC-cCHHHHHHHHHHHHHhhhcCC----CCCceEEEEeCchHHHHHHHHHHccCHHHhhcceEEEECC-----
Confidence            456677787 699999999999887654322    1234689999999999999999988889999999999998     


Q ss_pred             cccccCCCCcHHHHHHHHHHhhcccCCCceecCC-C-ceeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcHH
Q 002076          707 EAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD-H-LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF  784 (972)
Q Consensus       707 E~GiD~GG~~rEf~~~l~~e~~~p~~glF~~~~~-~-~l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~  784 (972)
                      |+|+|+||++||||+++++|+|+|++|||+.+++ + .++|||.+. ..++++++|+|+|++||+|||+|+++|++||++
T Consensus        84 E~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~  162 (405)
T 3h1d_A           84 EEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSH-ANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRS  162 (405)
T ss_dssp             CCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEECCC------CHHHHHHHHHHHHHHHHHHTCCCCCEECHH
T ss_pred             CCCcCCChhHHHHHHHHHHHHhCCcccceeeccCCceeEeeCCccc-cChhHHHHHHHHhHHHHHHHhCCCccCCCccHH
Confidence            7899999999999999999999999999998764 3 456999875 467889999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCccCCcHHHHHHHHHHHhhcCCccc--ceeeEEEEecccCcceeEeccCCCCccccChhhHHHHHHH
Q 002076          785 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE--LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHL  862 (972)
Q Consensus       785 f~k~Llg~~~~l~DL~~lDp~l~~sL~~l~~~~~dv~~--l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~  862 (972)
                      |||+|+|.+++++||+++||++|++|++|++++  +++  +++||+++.+.+|...++||+|||++|+||++||.+||++
T Consensus       163 f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~--~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l  240 (405)
T 3h1d_A          163 FYKHILGKSVRYTDMESEDYHFYQGLVYLLEND--VSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHL  240 (405)
T ss_dssp             HHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSC--GGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCC--hhhhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHHHH
Confidence            999999999999999999999999999999764  555  5788888777889888999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhh
Q 002076          863 VSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEH  942 (972)
Q Consensus       863 ~~~~~l~~~i~~q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~  942 (972)
                      +++|+++++|+.|++||++||++|||.++|++|+|+||+.||||.+ +||++||++||.|. ||+++||+|+|||+||++
T Consensus       241 ~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~-~id~~dl~~~t~y~-gy~~~~~~i~~FW~v~~~  318 (405)
T 3h1d_A          241 VCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLP-TIDIDDLKSNTEYH-KYQSNSIQIQWFWRALRS  318 (405)
T ss_dssp             HHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCC-CCCHHHHHHTEEEE-SSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCC-CCCHHHHHhhCccc-CCCCCCchHhhHHHHHHh
Confidence            9999999999999999999999999999999999999999999997 59999999999997 799999999999999999


Q ss_pred             CChhhhcccccCceEEecCCCCCCCCC
Q 002076          943 TSGKCMGVNCSLISWNITLSMNSFYEC  969 (972)
Q Consensus       943 ~s~ee~r~e~~~FL~FvTGs~~lP~~~  969 (972)
                      ||+|||+.    ||+|+|||+|+|..+
T Consensus       319 ~s~eer~~----fL~FvTGs~rlP~~G  341 (405)
T 3h1d_A          319 FDQADRAK----FLQFVTGTSKVPLQG  341 (405)
T ss_dssp             SCHHHHHH----HHHHHHSSSCCCTTC
T ss_pred             CCHHHHHH----HHHHHcCCCCCCCCc
Confidence            99987665    999999999999875
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 972
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 2e-64
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 7e-57
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  220 bits (560), Expect = 2e-64
 Identities = 82/285 (28%), Positives = 148/285 (51%), Gaps = 9/285 (3%)

Query: 646 FQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGV 705
           F+ +LA  R    S+ + +  +  + R  + ED++ Q+  +   DLR  + V F  E   
Sbjct: 4   FRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGE--- 60

Query: 706 EEAGIDGGGIFKDFMENITRAAFDVQYGLFKET--SDHLLYPNPGSGMIHEQHLQFFHFL 763
              G+D GG+ +++   ++    +  Y LF+    +++ L  NP S  I+  HL +F F+
Sbjct: 61  --EGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAS-TINPDHLSYFCFI 117

Query: 764 GILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISEL 823
           G  +A A+F G  +D  F+  F  ++  K   + DL S+D E Y  LI+++    +   L
Sbjct: 118 GRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGL 177

Query: 824 ELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGF 883
           E+YF +     G+ T  +L  GG NI VT EN   +I L++  R +  +++Q+  FL GF
Sbjct: 178 EMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGF 237

Query: 884 QQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHS 928
            +++   W+  F+E EL++++ G  + +D  D ++NT Y     +
Sbjct: 238 NEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYRHYTRN 281
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query972
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 87.73
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 84.95
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 80.83
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-65  Score=579.04  Aligned_cols=314  Identities=27%  Similarity=0.476  Sum_probs=289.7

Q ss_pred             cchhhhHHHHHHHHHHHHHhcCCCCCccceeEEecCCcHHHHHHHHHhcCChhhccCceEEEEeeccCcccccccCCCCc
Q 002076          637 VPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIF  716 (972)
Q Consensus       637 ~pf~~Rv~~f~~~~~~~~~~~~~~~~~~~~~l~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~  716 (972)
                      ++|+.|...|+......       ......+|+|+|++|++||++++...++.+++++|+|+|+|     |+|+|+|||+
T Consensus         2 ~~~~~~~~~f~~~~~~~-------~~~~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~g-----E~g~D~GG~~   69 (374)
T d1nd7a_           2 MGFRWKLAHFRYLCQSN-------ALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRG-----EEGLDYGGLA   69 (374)
T ss_dssp             CTHHHHHHHHHHHHHHT-------CCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----TCCCCCTHHH
T ss_pred             ccHHHHHHHHHHHHhhc-------CCCCceEEEEccccHHHHHHHHHHhcCHHHhCCCeEEEECC-----CCccCCCccH
Confidence            46888988898654321       12234589999999999999999999989999999999999     7899999999


Q ss_pred             HHHHHHHHHHhhcccCCCceecCCC--ceeeCCCCCCChhHHHHHHHHHhHHHHHHHhcCCccccCCcHHHHHhhccCCC
Q 002076          717 KDFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYN  794 (972)
Q Consensus       717 rEf~~~l~~e~~~p~~glF~~~~~~--~l~pnp~s~~~~~~~l~~f~flG~llG~Al~~~~~ldl~f~~~f~k~Llg~~~  794 (972)
                      ||||+++++|+++|++|||..++++  .++|||.+. ..++++++|+|+|+++|+||++|.+++++||++|||+|+|+++
T Consensus        70 rEff~~l~~el~~p~~~lf~~~~~~~~~~~~~p~~~-~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~  148 (374)
T d1nd7a_          70 REWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAST-INPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKL  148 (374)
T ss_dssp             HHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHcCCccCCeeecCCCCcccccCCccc-cChhHHHHHHHhHHHHHHHHHcCcccCCCccHHHHHHhcCCCC
Confidence            9999999999999999999987643  567999875 4567889999999999999999999999999999999999999


Q ss_pred             CCCCccCCcHHHHHHHHHHHhhcCCcccceeeEEEEecccCcceeEeccCCCCccccChhhHHHHHHHHHHHHHhhhHHH
Q 002076          795 YLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQ  874 (972)
Q Consensus       795 ~l~DL~~lDp~l~~sL~~l~~~~~dv~~l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYi~~~~~~~l~~~i~~  874 (972)
                      +++||+++||++|++|.++++++.+..+++++|+++.+..|+..++||+|||++++||.+|+++||+++++|+++++++.
T Consensus       149 t~~DL~~iD~~~~~sl~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~~  228 (374)
T d1nd7a_         149 TIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQE  228 (374)
T ss_dssp             CHHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHH
T ss_pred             CHHHHHHhCHHHHHhHHHHHhccccccccceeEEEEeecCCCcceeecCCCCCcccchHHHHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999999877666778999999998999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccchhhhcCCCHHHHHHHHcCCCCCccHHHHhcccEeCCCcCCCCHHHHHHHHHHhhCChhhhcccccC
Q 002076          875 QSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSVSCFSVILILLIEHTSGKCMGVNCSL  954 (972)
Q Consensus       875 q~~aF~~Gf~~vi~~~~L~~F~~~EL~~Li~G~~~~id~~dL~~~t~Y~ggy~~~~~~I~~FWevl~~~s~ee~r~e~~~  954 (972)
                      |++||++||++|+|.+++++|+|+||+.++||.++ ||+++|+++|.|. ||+++|++|+|||+||++||+|||+.    
T Consensus       229 ~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-id~~~l~~~~~y~-gy~~~s~~i~~fw~vl~~~t~ee~~~----  302 (374)
T d1nd7a_         229 QTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYR-HYTRNSKQIIWFWQFVKETDNEVRMR----  302 (374)
T ss_dssp             HHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHH----
T ss_pred             HHHHHHHhHHHhCCHHHHhhCCHHHHHHhhCCCCC-CCHHHHhhheeec-cCCCCCHHHHHHHHHHHhcCHHHHHH----
Confidence            99999999999999999999999999999999875 9999999999998 79999999999999999999987665    


Q ss_pred             ceEEecCCCCCCCCC
Q 002076          955 ISWNITLSMNSFYEC  969 (972)
Q Consensus       955 FL~FvTGs~~lP~~~  969 (972)
                      ||+|+|||+++|.++
T Consensus       303 fL~FvTGs~rlP~~G  317 (374)
T d1nd7a_         303 LLQFVTGTCRLPLGG  317 (374)
T ss_dssp             HHHHHHSCSCCCTTC
T ss_pred             hheeecCCCCCCCcc
Confidence            999999999999875
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure