Citrus Sinensis ID: 002083

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------97
MGSQGGFGQSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEIIMPADASCEDIEIDKNLSFLNGYVEQALEKGAQPYIPENERSGMLSVSNFRSQDQHEASIHGLRFEAYELPKPSVPSRPPVSLASATELAPVPEPSYPRVTQNVASVPSVSSADPSDLRLRLDGVQKKWGRPTYTPSETSTSTSTSEKTVNGVTKVDAARDTIYSKVRDTTYDSRKPDAEIPLEKQKLAASLFGGSSKTERRASTTGHRAGKASSHVIEKPQASKASDKTVAEKTIVQPPPDLLDLGEPAVLSRSPSIDPFKQLEGLLDSPQVPSNSNHGAAGANKDSDIIGLHAETAGSGPSSGIVNPVPTNKNDLDLLSGLSNSTTNNALGGTPTAHSTQVSKGPNTKDSLEKDSLVRQMGVTPTSPNPNLFKDLLG
ccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccHHccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHc
ccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccHHHHEEEEHHHHHcHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHcccccccccccEccccccHccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHcc
mgsqggfgqskEFLDLVKSIGEARSKAEEDRIVLNEIETLKrrisepdipkrkMKEYIIRLVYVEMLGHDASFGYIHAVKmthddnlvlkRTGYLAVTLFLNEDHDLIILIVNTIQkdlksdnyLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKrlcdndpgvmgatlcplfdlitvdvnsYKDLVISFVSILKQVAErrlpksydyhqmpapFIQIRLLKILALLgsgdkqasenMYTVVGDIFrkcdsssnignaVLYECICCvssiyanpkLIESAADVIARFLKsdshnlkyMGIDALGRLIKTSPEIAEQHQLAVIDcledpddtlkRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELaeqfapsnhwFIQTMNKVFEHAGDLVNIKVAHNLMRLIAegfgedddnadsQLRSSAVESYLRIigepklpsVFLQVICWVLGeygtadgkvsASYITGKLCDvaeaysndeTIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEIimpadascedieidkNLSFLNGYVEQALEkgaqpyipenersgmlsvsnfrsqdqheasihglrfeayelpkpsvpsrppvslasatelapvpepsyprvtqnvasvpsvssadpsdlrlrldgvqkkwgrptytpsetstststsektvngvtkvdaaRDTIYSKVrdttydsrkpdaeiplEKQKLAASlfggsskterrasttghragkasshviekpqaskasdktvaektivqpppdlldlgepavlsrspsidpfkqleglldspqvpsnsnhgaagankdsdiiglhaetagsgpssgivnpvptnkndldllsglsnsttnnalggtptahstqvskgpntkdslekdslvrqmgvtptspnpnlfkdllg
mgsqggfgqskeFLDLVKSIGearskaeedrivlneietlkrrisepdipkrkmKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLykmtkssnvevIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGfgedddnadSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEIIMPADASCEDIEIDKNLSFLNGYVEQALEKGAQPYIPENERSGMLSVSNFRSQDQHEASIHGLRFEAYELPKPSVPSRPPVSLASATELAPVPEPSYPRVTQNVasvpsvssadpsdlrlrldgvqkkwgrptytpsetstststsektvngvtkvdaardtiyskvrdttydsrkpdaeiplekqklaaslfggsskterrasttghragkasshviekpqaskasdktvaeKTIVqpppdlldlgEPAVLSRSPSIDPFKQLEGLLDSPQVPSNSNHGAAGANKDSDIIGLHAETAGSGPSSGIVNPVPTNKNDLDLLSGLSNSTTNNAlggtptahstqvskgpntkdsLEKDSLVrqmgvtptspnpnlfkdllg
MGSQGGFGQSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEIIMPADASCEDIEIDKNLSFLNGYVEQALEKGAQPYIPENERSGMLSVSNFRSQDQHEASIHGLRFEAYElpkpsvpsrppvslasaTELAPVPEPSYPRVTQNvasvpsvssadpsdLRLRLDGVQKKWGRptytpsetstststsektVNGVTKVDAARDTIYSKVRDTTYDSRKPDAEIPLEKQKLAASLFGGSSKTERRASTTGHRAGKASSHVIEKPQASKASDKTVAEKTIVQPPPDLLDLGEPAVLSRSPSIDPFKQLEGLLDSPQVPSNSNHGAAGANKDSDIIGLHAETAGSGPSSGIVNPVPTnkndldllsglsnsttnnalGGTPTAHSTQVSKGPNTKDSLEKDSLVRQMGVTPTSPNPNLFKDLLG
*******************************IVLNEIETL************KMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFG**************VESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSA***TDLQQRAYELEAVTGLDAYAVEIIMPADASCEDIEIDKNLSFLNGYVEQALE**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
**************DLVKSIGEARSKAEEDRIVLNEIETLK***S******RKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEI*************DKNLSFLNGY*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************PNPNLFKDLLG
********QSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEIIMPADASCEDIEIDKNLSFLNGYVEQALEKGAQPYIPENERSGMLSVSNFRSQDQHEASIHGLRFEAYELPK*************ATELAPVPEPSYPRVTQN************SDLRLRLDGVQKKWGRP*******************GVTKVDAARDTIYSKVRDTTYDSRKPDAEIPLEKQKLAASL**************************************VAEKTIVQPPPDLLDLGEPAVLSRSPSIDPFKQLEGLLDSPQVPSNSNHGAAGANKDSDIIGLHAETAGSGPSSGIVNPVPTNKNDLDLLSGLSNSTTNNALGG*****************SLEKDSLVRQMGVTPTSPNPNLFKDLLG
**********KEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEIIMPADASCEDIEIDKNLSFLNGYVEQALEKG*************************************************************************************DLRLRLDGVQKKWGRPTY********************************************************************************************************************VLSRSPSIDPFKQLEGLLD************************H*****************TNKNDLD*******************************KDSLEKDSLVRQMGVTPTSPNPNLFKDLLG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGSQGGFGQSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEIIMPADASCEDIEIDKNLSFLNGYVEQALEKGAQPYIPENERSGMLSVSNFRSQDQHEASIHGLRFEAYELPKPSVPSRPPVSLASATELAPVPEPSYPRVTQNVASVPSVSSADPSDLRLRLDGVQKKWGRPTYTPSETSTSTSTSEKTVNGVTKVDAARDTIYSKVRDTTYDSRKPDAEIPLEKQKLAASLFGGSSKTERRASTTGHRAGKASSHVIEKPQASKASDKTVAEKTIVQPPPDLLDLGEPAVLSRSPSIDPFKQLEGLLDSPQVPSNSNHGAAGANKDSDIIGLHAETAGSGPSSGIVNPVPTNKNDLDLLSGLSNSTTNNALGGTPTAHSTQVSKGPNTKDSLEKDSLVRQMGVTPTSPNPNLFKDLLG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query969 2.2.26 [Sep-21-2011]
Q8L7A9938 AP-4 complex subunit epsi yes no 0.954 0.986 0.718 0.0
Q80V94 1122 AP-4 complex subunit epsi yes no 0.748 0.646 0.387 1e-146
Q9UPM8 1137 AP-4 complex subunit epsi yes no 0.745 0.635 0.383 1e-145
Q54VE01080 AP-4 complex subunit epsi yes no 0.642 0.576 0.354 1e-111
Q8I8U2895 AP-1 complex subunit gamm no no 0.577 0.625 0.246 2e-64
Q9ZUI6862 AP-1 complex subunit gamm no no 0.573 0.645 0.266 3e-63
Q99128853 AP-1 complex subunit gamm N/A no 0.559 0.635 0.247 9e-58
Q84K16876 AP-1 complex subunit gamm no no 0.571 0.632 0.255 5e-57
Q5R5M2822 AP-1 complex subunit gamm no no 0.563 0.664 0.254 9e-56
O43747822 AP-1 complex subunit gamm no no 0.563 0.664 0.258 2e-55
>sp|Q8L7A9|AP4E_ARATH AP-4 complex subunit epsilon OS=Arabidopsis thaliana GN=At1g31730 PE=1 SV=1 Back     alignment and function desciption
 Score = 1388 bits (3592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 697/970 (71%), Positives = 802/970 (82%), Gaps = 45/970 (4%)

Query: 1   MGSQGGFGQSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIR 60
           MGSQGGFGQSKEFLDLVKSIGEARSKAEEDRIVL+E++ LKRR+ EPDIPKRKMKEYIIR
Sbjct: 13  MGSQGGFGQSKEFLDLVKSIGEARSKAEEDRIVLSEVDILKRRLLEPDIPKRKMKEYIIR 72

Query: 61  LVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLK 120
           LVY+EMLGHDASFGYI+AVKMTHDDNL+LKRTGYLAVTLFLNEDHDLIILIVNTIQKDL+
Sbjct: 73  LVYIEMLGHDASFGYIYAVKMTHDDNLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLR 132

Query: 121 SDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV 180
           SDNYL+VCAALNA+C+LINEETIPAVLPQVVELL H KEAVR+KAIMALHRF++KSPSSV
Sbjct: 133 SDNYLVVCAALNAICRLINEETIPAVLPQVVELLNHQKEAVRKKAIMALHRFHRKSPSSV 192

Query: 181 QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSY 240
            HLVSNFRKRLCDNDPGVMGATLCPLFDLI+ DVNSYKDLV SFVSILKQV ERRLPKSY
Sbjct: 193 SHLVSNFRKRLCDNDPGVMGATLCPLFDLISEDVNSYKDLVSSFVSILKQVTERRLPKSY 252

Query: 241 DYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICC 300
           DYHQMPAPFIQI+LLKI+ALLGSGDK AS+ M  V+GD+FRKCDSS+NIGNA+LYECI C
Sbjct: 253 DYHQMPAPFIQIKLLKIMALLGSGDKNASDIMSMVLGDLFRKCDSSTNIGNAILYECIRC 312

Query: 301 VSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLE 360
           +S I  NPKL+E+AAD I++FLKSDSHNLKYMGID LGRLIK SP+IAEQHQLAVIDCLE
Sbjct: 313 ISCILPNPKLLEAAADAISKFLKSDSHNLKYMGIDGLGRLIKISPDIAEQHQLAVIDCLE 372

Query: 361 DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPS 420
           DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPS
Sbjct: 373 DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPS 432

Query: 421 NHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGE 480
           N WFIQ MNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDD+ADS+LR SAVESYL++I E
Sbjct: 433 NQWFIQIMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDDADSKLRLSAVESYLQLISE 492

Query: 481 PKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYA 540
           PKLPS+FLQVI WVLGEYGTADGK SASYI+GKLCDVA+AYS+DET+K YA++ALMKIYA
Sbjct: 493 PKLPSLFLQVISWVLGEYGTADGKYSASYISGKLCDVADAYSSDETVKGYAVSALMKIYA 552

Query: 541 FEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEIIMPADASCED 600
           FEIA+GRKVD+LPECQSLIEEL ASHSTDLQQRAYEL+A+  LDA AVE I+P DASCED
Sbjct: 553 FEIASGRKVDVLPECQSLIEELLASHSTDLQQRAYELQALLALDARAVETILPLDASCED 612

Query: 601 IEIDKNLSFLNGYVEQALEKGAQPYIPENERSGMLSVSNFRSQDQHEASIHGLRFEAYEL 660
           IE+DK+LSFLNGY++QA+E GAQPYI E ERSGM   +++  QD HE   H LRFEAYEL
Sbjct: 613 IEVDKDLSFLNGYIQQAIESGAQPYISERERSGMFETTDYHPQDHHEVPTHALRFEAYEL 672

Query: 661 PKPSVPSRPPVSLASATELAPVPEPSYPRVTQNVASVPSVSSADPSDLRLRLDGVQKKWG 720
           PKPSVP +      ++ EL PVPEPSY   +    S   VS  + S+++LRLDGV++KWG
Sbjct: 673 PKPSVPPQ------ASNELVPVPEPSYYSESHQPISTSLVSERESSEIKLRLDGVKQKWG 726

Query: 721 RPTYTPSETSTSTSTSEKTVNGVTKVDAARDTIYSKVRDTTYDSRKPDAEIPLEKQKLAA 780
           RP+Y    T+ ++ST+ +  NG++    A     S    ++Y+ +KP  EI  EKQ+LAA
Sbjct: 727 RPSY--QSTTAASSTTPQAANGISTHSDAGVGSSSSKPRSSYEPKKP--EIDPEKQRLAA 782

Query: 781 SLFGG-SSKTERRASTTGHRAGKASSHVIEKPQASKASDKTVAEKTIVQPPPDLLDLGEP 839
           SLFGG SS+T++R+S+ GH+  K +        A+K +      +T VQPPPDLLD GEP
Sbjct: 783 SLFGGSSSRTDKRSSSGGHKPAKGT--------ANKTATVPKENQTPVQPPPDLLDFGEP 834

Query: 840 AVLSRSPSIDPFKQLEGLLDSPQVPSNSNHGAAGANKDSDIIGLHAETAGSGPSSGIVNP 899
              + + ++DPFK+LEGL+DS          ++     SD++GL+++ A          P
Sbjct: 835 TATTAT-AMDPFKELEGLMDS----------SSQDGGSSDVMGLYSDAA----------P 873

Query: 900 VPTNKNDLDLLSGLSNSTTNNALGGTPTAHSTQVSKGPNTKDSLEKDSLVRQMGVTPTSP 959
           V T  +   LLS LS+S+  N+    P     Q SKGPNTK++LEKD+LVRQMGV PTS 
Sbjct: 874 VTTTTSVDSLLSELSDSSKGNSRTYQP-----QTSKGPNTKEALEKDALVRQMGVNPTSQ 928

Query: 960 NPNLFKDLLG 969
           NP LFKDLLG
Sbjct: 929 NPTLFKDLLG 938
Subunit of novel type of clathrin- or non-clathrin-associated protein coat involved in targeting proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system.
Arabidopsis thaliana (taxid: 3702)
>sp|Q80V94|AP4E1_MOUSE AP-4 complex subunit epsilon-1 OS=Mus musculus GN=Ap4e1 PE=2 SV=3 Back     alignment and function description
>sp|Q9UPM8|AP4E1_HUMAN AP-4 complex subunit epsilon-1 OS=Homo sapiens GN=AP4E1 PE=1 SV=2 Back     alignment and function description
>sp|Q54VE0|AP4E_DICDI AP-4 complex subunit epsilon OS=Dictyostelium discoideum GN=ap4e1 PE=3 SV=1 Back     alignment and function description
>sp|Q8I8U2|AP1G_DICDI AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZUI6|AP1G2_ARATH AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070 PE=2 SV=2 Back     alignment and function description
>sp|Q99128|AP1G1_USTMA AP-1 complex subunit gamma-1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=APL4 PE=3 SV=2 Back     alignment and function description
>sp|Q84K16|AP1G1_ARATH AP-1 complex subunit gamma-1 OS=Arabidopsis thaliana GN=GAMMA-ADR PE=1 SV=1 Back     alignment and function description
>sp|Q5R5M2|AP1G1_PONAB AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP1G1 PE=2 SV=1 Back     alignment and function description
>sp|O43747|AP1G1_HUMAN AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query969
224129594980 predicted protein [Populus trichocarpa] 0.992 0.981 0.812 0.0
359474753 1489 PREDICTED: AP-4 complex subunit epsilon- 0.986 0.642 0.806 0.0
255557813981 AP-1 complex subunit gamma-2, putative [ 0.997 0.985 0.812 0.0
449465065975 PREDICTED: AP-4 complex subunit epsilon- 0.990 0.984 0.754 0.0
449503572975 PREDICTED: AP-4 complex subunit epsilon- 0.990 0.984 0.752 0.0
296085470884 unnamed protein product [Vitis vinifera] 0.832 0.912 0.857 0.0
356559163981 PREDICTED: AP-4 complex subunit epsilon- 0.994 0.982 0.752 0.0
3575174571018 AP-4 complex subunit epsilon-1 [Medicago 0.990 0.943 0.731 0.0
3564952761026 PREDICTED: AP-4 complex subunit epsilon- 0.989 0.934 0.740 0.0
356558890981 PREDICTED: AP-4 complex subunit epsilon- 0.994 0.982 0.745 0.0
>gi|224129594|ref|XP_002328755.1| predicted protein [Populus trichocarpa] gi|222839053|gb|EEE77404.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1620 bits (4195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 792/975 (81%), Positives = 865/975 (88%), Gaps = 13/975 (1%)

Query: 1   MGSQGGFGQSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIR 60
           MGSQGGFGQSKEFLDLVKSIGEARSKAEEDRIVL EIE+LKRRI EP IPKRKMKEYIIR
Sbjct: 13  MGSQGGFGQSKEFLDLVKSIGEARSKAEEDRIVLREIESLKRRIVEPGIPKRKMKEYIIR 72

Query: 61  LVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLK 120
           LVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLK
Sbjct: 73  LVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLK 132

Query: 121 SDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV 180
           SDNYL+VCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVR+KAIMALHRFY KSPSSV
Sbjct: 133 SDNYLVVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRKKAIMALHRFYHKSPSSV 192

Query: 181 QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSY 240
            HL+SNFRK+LCD+DPGVMGATLCPLFDLIT+D NSYKDLV+SFVSILKQVAERRLPK Y
Sbjct: 193 SHLLSNFRKKLCDSDPGVMGATLCPLFDLITIDANSYKDLVVSFVSILKQVAERRLPKVY 252

Query: 241 DYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICC 300
           DYHQ+PAPFIQIRLLKILALLGSGDKQASE+MYTVVGDIF KCDSSSNIGNAVLYECICC
Sbjct: 253 DYHQLPAPFIQIRLLKILALLGSGDKQASEHMYTVVGDIFGKCDSSSNIGNAVLYECICC 312

Query: 301 VSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLE 360
           VSSI+ NPKL+E+AADVIARFLKSDSHNLKYMGIDALGRLIK SPEIAEQHQLAVIDCLE
Sbjct: 313 VSSIHPNPKLLEAAADVIARFLKSDSHNLKYMGIDALGRLIKLSPEIAEQHQLAVIDCLE 372

Query: 361 DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPS 420
           DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPS
Sbjct: 373 DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPS 432

Query: 421 NHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGE 480
           NHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDD ADSQLRSSAVESYL IIGE
Sbjct: 433 NHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDTADSQLRSSAVESYLHIIGE 492

Query: 481 PKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYA 540
           PKLPSVFL VICWVLGEYGTADGK SASY+TGKLCDVAE+YS+DET+KAYA+TALMKIYA
Sbjct: 493 PKLPSVFLHVICWVLGEYGTADGKFSASYVTGKLCDVAESYSSDETVKAYAVTALMKIYA 552

Query: 541 FEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEIIMPADASCED 600
           FEIAAGRK+D+LPECQSLIEELSASHSTDLQQRAYEL+AV GLD  A+  IMP+DASCED
Sbjct: 553 FEIAAGRKLDILPECQSLIEELSASHSTDLQQRAYELQAVIGLDVRAIGSIMPSDASCED 612

Query: 601 IEIDKNLSFLNGYVEQALEKGAQPYIPENERSGMLSVSNFRSQDQHEASIHGLRFEAYEL 660
           IE+DK LSFLNGYV+Q+LEKGAQPYIPENERSGM+++SNFR+QDQ E + HGLRFEAYEL
Sbjct: 613 IEVDKCLSFLNGYVQQSLEKGAQPYIPENERSGMVNISNFRNQDQLEVASHGLRFEAYEL 672

Query: 661 PKPSVPS-RPPVSLASATELAPVPEPSYPRVTQNVASVPSVSSADPSDLRLRLDGVQKKW 719
           PKPSV S  PP+S+AS+TEL PVPEPSY R T   ASVPS S   PS L+LRLDGVQKKW
Sbjct: 673 PKPSVQSWTPPMSVASSTELVPVPEPSYYRETPQTASVPSSSDTGPSGLKLRLDGVQKKW 732

Query: 720 GRPTYTPSETSTSTSTSEKTVNGVTKVDAARDTIYSKVRDTTYDSRKPDAEIPLEKQKLA 779
           GRPTY+ S  STS S+S K VNG+T+VD    T  SK  +T+YDSR+P  EI  EKQKLA
Sbjct: 733 GRPTYSSSSASTSNSSSLKAVNGITQVDGV-STGNSKTHETSYDSRRPQVEISEEKQKLA 791

Query: 780 ASLFGGSSKTERRASTTGHRAGKASSHVIEKPQASKAS-----DKTVAEKTIVQPPPDLL 834
           ASLFGGSSKTERR S+TGH+  KASSH  EK    K++     D  V +  +VQPPPDLL
Sbjct: 792 ASLFGGSSKTERR-SSTGHKVAKASSHAAEKLHTPKSTAISSADNAVEKPNLVQPPPDLL 850

Query: 835 DLGEPAVLSRSPSIDPFKQLEGLLDSPQVPSNSNHGAAGANKDSDIIGLHAETAGSGPSS 894
           DLGEP V S +PS+DPF+QLEGLLD+ QVP     G  G  K  D + L+AET  SG S+
Sbjct: 851 DLGEPIVTSSAPSVDPFRQLEGLLDATQVP-----GTLGGTKAPDFMALYAETPASGQSA 905

Query: 895 GIVNPVPTNKNDLDLLSGLSNSTTNNALGGTPTAHSTQVSKGPNTKDSLEKDSLVRQMGV 954
           G+ +P+   +++++L+ GLSN+++N   GG   A+ +Q+SKGPN KD+LEKD+LVRQMGV
Sbjct: 906 GVSHPLSLIRDEINLVPGLSNASSNTVHGGATAANPSQISKGPNVKDALEKDALVRQMGV 965

Query: 955 TPTSPNPNLFKDLLG 969
           TP+  NPNLFKDL G
Sbjct: 966 TPSGQNPNLFKDLFG 980

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474753|ref|XP_002269504.2| PREDICTED: AP-4 complex subunit epsilon-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255557813|ref|XP_002519936.1| AP-1 complex subunit gamma-2, putative [Ricinus communis] gi|223540982|gb|EEF42540.1| AP-1 complex subunit gamma-2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449465065|ref|XP_004150249.1| PREDICTED: AP-4 complex subunit epsilon-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449503572|ref|XP_004162069.1| PREDICTED: AP-4 complex subunit epsilon-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296085470|emb|CBI29202.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559163|ref|XP_003547870.1| PREDICTED: AP-4 complex subunit epsilon-like [Glycine max] Back     alignment and taxonomy information
>gi|357517457|ref|XP_003629017.1| AP-4 complex subunit epsilon-1 [Medicago truncatula] gi|355523039|gb|AET03493.1| AP-4 complex subunit epsilon-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356495276|ref|XP_003516505.1| PREDICTED: AP-4 complex subunit epsilon-like [Glycine max] Back     alignment and taxonomy information
>gi|356558890|ref|XP_003547735.1| PREDICTED: AP-4 complex subunit epsilon-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query969
TAIR|locus:2028586938 AT1G31730 [Arabidopsis thalian 0.820 0.847 0.758 0.0
MGI|MGI:1336993 1122 Ap4e1 "adaptor-related protein 0.625 0.540 0.428 9.2e-139
UNIPROTKB|Q9UPM8 1137 AP4E1 "AP-4 complex subunit ep 0.625 0.532 0.432 7.4e-137
ZFIN|ZDB-GENE-061221-3 1121 ap4e1 "adaptor-related protein 0.636 0.550 0.425 9.4e-137
UNIPROTKB|E1BR26 1144 AP4E1 "Uncharacterized protein 0.638 0.541 0.429 9.4e-137
UNIPROTKB|E1BR25 1139 AP4E1 "Uncharacterized protein 0.638 0.543 0.429 9.4e-137
UNIPROTKB|E2RJS0 1125 AP4E1 "Uncharacterized protein 0.625 0.538 0.432 1.5e-136
UNIPROTKB|F1RYM9 1139 AP4E1 "Uncharacterized protein 0.626 0.532 0.429 1.9e-136
UNIPROTKB|I3LM40 1131 AP4E1 "Uncharacterized protein 0.626 0.536 0.429 1.9e-136
UNIPROTKB|E1BNA3 1138 LOC536144 "Uncharacterized pro 0.625 0.532 0.432 4e-136
TAIR|locus:2028586 AT1G31730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3121 (1103.7 bits), Expect = 0., Sum P(2) = 0.
 Identities = 613/808 (75%), Positives = 686/808 (84%)

Query:     1 MGSQGGFGQSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIR 60
             MGSQGGFGQSKEFLDLVKSIGEARSKAEEDRIVL+E++ LKRR+ EPDIPKRKMKEYIIR
Sbjct:    13 MGSQGGFGQSKEFLDLVKSIGEARSKAEEDRIVLSEVDILKRRLLEPDIPKRKMKEYIIR 72

Query:    61 LVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLK 120
             LVY+EMLGHDASFGYI+AVKMTHDDNL+LKRTGYLAVTLFLNEDHDLIILIVNTIQKDL+
Sbjct:    73 LVYIEMLGHDASFGYIYAVKMTHDDNLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLR 132

Query:   121 SDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSV 180
             SDNYL+VCAALNA+C+LINEETIPAVLPQVVELL H KEAVR+KAIMALHRF++KSPSSV
Sbjct:   133 SDNYLVVCAALNAICRLINEETIPAVLPQVVELLNHQKEAVRKKAIMALHRFHRKSPSSV 192

Query:   181 QHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAERRLPKSY 240
              HLVSNFRKRLCDNDPGVMGATLCPLFDLI+ DVNSYKDLV SFVSILKQV ERRLPKSY
Sbjct:   193 SHLVSNFRKRLCDNDPGVMGATLCPLFDLISEDVNSYKDLVSSFVSILKQVTERRLPKSY 252

Query:   241 DYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICC 300
             DYHQMPAPFIQI+LLKI+ALLGSGDK AS+ M  V+GD+FRKCDSS+NIGNA+LYECI C
Sbjct:   253 DYHQMPAPFIQIKLLKIMALLGSGDKNASDIMSMVLGDLFRKCDSSTNIGNAILYECIRC 312

Query:   301 VSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLE 360
             +S I  NPKL+E+AAD I++FLKSDSHNLKYMGID LGRLIK SP+IAEQHQLAVIDCLE
Sbjct:   313 ISCILPNPKLLEAAADAISKFLKSDSHNLKYMGIDGLGRLIKISPDIAEQHQLAVIDCLE 372

Query:   361 DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPS 420
             DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPS
Sbjct:   373 DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPS 432

Query:   421 NHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGE 480
             N WFIQ MNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDD+ADS+LR SAVESYL++I E
Sbjct:   433 NQWFIQIMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDDADSKLRLSAVESYLQLISE 492

Query:   481 PKLPSVFLQVICWVLGEYGTADGKVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYA 540
             PKLPS+FLQVI WVLGEYGTADGK SASYI+GKLCDVA+AYS+DET+K YA++ALMKIYA
Sbjct:   493 PKLPSLFLQVISWVLGEYGTADGKYSASYISGKLCDVADAYSSDETVKGYAVSALMKIYA 552

Query:   541 FEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEIIMPADASCED 600
             FEIA+GRKVD+LPECQSLIEEL ASHSTDLQQRAYEL+A+  LDA AVE I+P DASCED
Sbjct:   553 FEIASGRKVDVLPECQSLIEELLASHSTDLQQRAYELQALLALDARAVETILPLDASCED 612

Query:   601 IEIDKNLSFLNGYVEQALEKGAQPYIPENERSGMLSVSNFRSQDQHEASIHGLRFEAYEX 660
             IE+DK+LSFLNGY++QA+E GAQPYI E ERSGM   +++  QD HE   H LRFEAYE 
Sbjct:   613 IEVDKDLSFLNGYIQQAIESGAQPYISERERSGMFETTDYHPQDHHEVPTHALRFEAYEL 672

Query:   661 XXXXXXXXXXXXXXXXTELAPVPEPSYPRVTQNXXXXXXXXXXXXXXLRLRLDGVQKKWG 720
                              EL PVPEPSY   +                ++LRLDGV++KWG
Sbjct:   673 PKPSVPPQAS------NELVPVPEPSYYSESHQPISTSLVSERESSEIKLRLDGVKQKWG 726

Query:   721 RXXXXXXXXXXXXXXXXXXVNGV-TKVDAARDTIYSKVRDTTYDSRKPDAEIPLEKQKLA 779
             R                   NG+ T  DA   +  SK R ++Y+ +KP  EI  EKQ+LA
Sbjct:   727 RPSYQSTTAASSTTPQAA--NGISTHSDAGVGSSSSKPR-SSYEPKKP--EIDPEKQRLA 781

Query:   780 ASLFGGSS-KTERRASTTGHRAGKASSH 806
             ASLFGGSS +T++R+S+ GH+  K +++
Sbjct:   782 ASLFGGSSSRTDKRSSSGGHKPAKGTAN 809
GO:0005886 "plasma membrane" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030117 "membrane coat" evidence=IEA
GO:0030276 "clathrin binding" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
MGI|MGI:1336993 Ap4e1 "adaptor-related protein complex AP-4, epsilon 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UPM8 AP4E1 "AP-4 complex subunit epsilon-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061221-3 ap4e1 "adaptor-related protein complex 4, epsilon 1 subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BR26 AP4E1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BR25 AP4E1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJS0 AP4E1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RYM9 AP4E1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LM40 AP4E1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNA3 LOC536144 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L7A9AP4E_ARATHNo assigned EC number0.71850.95450.9861yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query969
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 3e-72
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 1e-12
pfam1364688 pfam13646, HEAT_2, HEAT repeats 5e-06
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  247 bits (634), Expect = 3e-72
 Identities = 145/544 (26%), Positives = 250/544 (45%), Gaps = 43/544 (7%)

Query: 40  LKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNLVLKRTGYLAVTL 99
           L R ++      RK KE + +L+Y+ MLG D SF +   VK+   ++  LKR GYL + L
Sbjct: 8   LARILNSFRDDPRKKKEAVKKLIYLIMLGEDISFLFFEVVKLVASNDFTLKRLGYLYLKL 67

Query: 100 FLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKE 159
              E  DL IL+ N+I+KDL+S N LI   AL  +  +   E    + P + +LL     
Sbjct: 68  LAEESPDLAILVTNSIKKDLQSPNPLIRGLALRTLSCIRVPELARDLAPDIKKLLVDRDP 127

Query: 160 AVRRKAIMALHRFYQKSPSSVQH-LVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYK 218
            VR+KA +A+ + Y+K P  V+  LV   ++ L D DPGV+ A +  L+++   D     
Sbjct: 128 YVRKKAALAILKLYRKDPDLVRDFLVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLN 187

Query: 219 DLVISFVSILKQVAERRLPKSYDYHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGD 278
            L+   V  L  +             +  P++Q+++L++L      D +  + +   + +
Sbjct: 188 KLLPLLVRRLCNLL-----------TVCNPWLQVKILRLLTRYAPQDPREPKELLEDILN 236

Query: 279 IFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARFLKSDSHNLKYMGIDALG 338
           + +      N  NAVLYE +  +  +   P+LI  A + + R L S   NL+Y+ +  L 
Sbjct: 237 LLQ------NSNNAVLYEAVKTIIHLDPEPELIVLAVNALGRLLSSPDENLRYVALRNLN 290

Query: 339 RLIKTSPEIAEQHQLAVIDCLE-DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISI 397
           ++++  P  A QH   +I CL+ D D +++ +  +LLYK+   SNV+ IV  ++ Y+  I
Sbjct: 291 KILEKHPP-AVQHLDLIIFCLKTDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVSEI 349

Query: 398 NDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGE 457
            D  +K ++      LAE+F     W I  + ++   AG  V  ++   +  +I      
Sbjct: 350 ADPEFKIKLVKAIGRLAEKFPTDAEWCIDVLLELLSLAGSYVVDEIVEVIRDII------ 403

Query: 458 DDDNADSQLRSSAVE---SYLRIIGEPKLPSVFLQVICWVLGEYGTADGKVSASYITGKL 514
                  +LR   +E     L  I  P+          W+LGEYG       +  +    
Sbjct: 404 ---RKYPELREYILEHLCELLEDIESPEA----RAAALWILGEYGELIPNSPSDLLR--- 453

Query: 515 CDVAEAY-SNDETIKAYAITALMKIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQR 573
             + E +      ++   +TAL+K+         +  ++    SL  +   S   +L+ R
Sbjct: 454 -SILEVFVLESLKVRLALLTALVKLSLTFPDEEVQNLIVQVVLSLATQ--DSSDLELRDR 510

Query: 574 AYEL 577
           A E 
Sbjct: 511 AVEY 514

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 969
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 100.0
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 100.0
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 100.0
PTZ00429746 beta-adaptin; Provisional 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 100.0
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 100.0
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 100.0
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.33
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 99.14
PTZ00429746 beta-adaptin; Provisional 98.97
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.91
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.79
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.77
PRK09687280 putative lyase; Provisional 98.75
PRK09687280 putative lyase; Provisional 98.68
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.56
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.54
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.53
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.53
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.5
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.5
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.46
PF14764459 SPG48: AP-5 complex subunit, vesicle trafficking 98.45
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.41
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 98.33
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 98.33
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 98.29
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.25
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.22
KOG18241233 consensus TATA-binding protein-interacting protein 98.17
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.16
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.09
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.03
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.98
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 97.89
KOG18241233 consensus TATA-binding protein-interacting protein 97.89
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.87
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.81
PF05804708 KAP: Kinesin-associated protein (KAP) 97.64
PF05804708 KAP: Kinesin-associated protein (KAP) 97.55
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.54
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 97.45
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.41
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.39
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.33
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.29
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.28
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.06
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.03
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.02
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.0
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 96.99
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 96.99
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 96.94
COG1413335 FOG: HEAT repeat [Energy production and conversion 96.87
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.79
KOG04141251 consensus Chromosome condensation complex Condensi 96.79
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.64
KOG1242569 consensus Protein containing adaptin N-terminal re 96.64
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 96.63
KOG2025892 consensus Chromosome condensation complex Condensi 96.47
KOG01681051 consensus Putative ubiquitin fusion degradation pr 96.45
KOG04141251 consensus Chromosome condensation complex Condensi 96.43
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 96.41
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.29
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.27
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 96.26
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.22
COG1413335 FOG: HEAT repeat [Energy production and conversion 96.08
KOG09151702 consensus Uncharacterized conserved protein [Funct 96.08
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 96.04
KOG1242569 consensus Protein containing adaptin N-terminal re 95.99
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 95.97
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.91
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 95.77
KOG12481176 consensus Uncharacterized conserved protein [Funct 95.75
KOG2259823 consensus Uncharacterized conserved protein [Funct 95.68
TIGR02270410 conserved hypothetical protein. Members are found 95.66
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 95.61
KOG4224550 consensus Armadillo repeat protein VAC8 required f 95.59
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.57
TIGR02270410 conserved hypothetical protein. Members are found 95.44
smart00638574 LPD_N Lipoprotein N-terminal Domain. 95.29
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.25
COG50981128 Chromosome condensation complex Condensin, subunit 95.17
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 95.01
COG50981128 Chromosome condensation complex Condensin, subunit 95.01
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 94.85
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 94.77
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 94.71
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 94.56
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 94.55
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 94.38
KOG22741005 consensus Predicted importin 9 [Intracellular traf 94.35
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 94.34
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.33
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.06
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.93
KOG09151702 consensus Uncharacterized conserved protein [Funct 93.69
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 93.34
KOG4224550 consensus Armadillo repeat protein VAC8 required f 93.31
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 93.28
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 93.24
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 93.2
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 93.19
KOG4199461 consensus Uncharacterized conserved protein [Funct 93.13
KOG22741005 consensus Predicted importin 9 [Intracellular traf 93.1
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 92.93
PF13251182 DUF4042: Domain of unknown function (DUF4042) 92.8
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 92.7
KOG2038988 consensus CAATT-binding transcription factor/60S r 92.64
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 92.64
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 92.64
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 92.41
PF14500262 MMS19_N: Dos2-interacting transcription regulator 92.2
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 91.55
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 91.54
PF1036392 DUF2435: Protein of unknown function (DUF2435) 90.75
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 90.69
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 90.15
smart00638574 LPD_N Lipoprotein N-terminal Domain. 90.12
COG5218885 YCG1 Chromosome condensation complex Condensin, su 89.89
KOG1293678 consensus Proteins containing armadillo/beta-caten 89.76
PF14500262 MMS19_N: Dos2-interacting transcription regulator 89.69
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 89.04
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 89.02
KOG1293678 consensus Proteins containing armadillo/beta-caten 88.92
PF08167165 RIX1: rRNA processing/ribosome biogenesis 88.9
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 88.07
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 87.99
KOG45241014 consensus Uncharacterized conserved protein [Funct 87.92
PF04388668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 87.62
PF05004309 IFRD: Interferon-related developmental regulator ( 87.33
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 87.28
cd06561197 AlkD_like A new structural DNA glycosylase. This d 87.15
PF14631 1426 FancD2: Fanconi anaemia protein FancD2 nuclease; P 86.99
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 86.91
PF08167165 RIX1: rRNA processing/ribosome biogenesis 86.86
KOG0413 1529 consensus Uncharacterized conserved protein relate 86.78
PF11707330 Npa1: Ribosome 60S biogenesis N-terminal; InterPro 86.68
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 86.47
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 86.42
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 85.98
KOG1967 1030 consensus DNA repair/transcription protein Mms19 [ 85.71
KOG19491005 consensus Uncharacterized conserved protein [Funct 85.51
PF05004309 IFRD: Interferon-related developmental regulator ( 85.5
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 85.12
KOG4653982 consensus Uncharacterized conserved protein [Funct 84.73
KOG01681051 consensus Putative ubiquitin fusion degradation pr 84.55
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 84.16
KOG4535728 consensus HEAT and armadillo repeat-containing pro 83.9
KOG2062929 consensus 26S proteasome regulatory complex, subun 83.4
KOG12481176 consensus Uncharacterized conserved protein [Funct 83.33
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 83.29
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 82.61
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 82.32
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 82.29
KOG0251491 consensus Clathrin assembly protein AP180 and rela 81.76
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 81.53
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 81.47
KOG1820815 consensus Microtubule-associated protein [Cytoskel 81.47
KOG2956516 consensus CLIP-associating protein [General functi 81.35
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 81.28
KOG19321180 consensus TATA binding protein associated factor [ 81.12
KOG2062929 consensus 26S proteasome regulatory complex, subun 80.94
KOG15171387 consensus Guanine nucleotide binding protein MIP1 80.91
KOG2956516 consensus CLIP-associating protein [General functi 80.4
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 80.23
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-133  Score=1153.08  Aligned_cols=848  Identities=32%  Similarity=0.488  Sum_probs=727.4

Q ss_pred             CCCCCchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcC
Q 002083            5 GGFGQSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHD   84 (969)
Q Consensus         5 ~~~~~sk~l~dlIk~Ir~~ks~~eE~~~I~~ElaeiR~~f~~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS   84 (969)
                      +.+..+.+|+||||+||.+||++|||++|++|++.||..|++++.+.+.||++|.||+|++||||+++||++|++||++|
T Consensus         2 ~~~~~~srL~dlIr~IraakT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclKLias   81 (866)
T KOG1062|consen    2 NMFAPSSRLRDLIRAIRAAKTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIAS   81 (866)
T ss_pred             CCCCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcC
Confidence            45556689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhcCCCChHHHHH
Q 002083           85 DNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRK  164 (969)
Q Consensus        85 ~~~~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL~d~~pyVRKk  164 (969)
                      ++|.+||+|||++++++++++|+++|+||+|+|||+|+|.+++|+||.++|+|+++||++++.|+|.++|.|++||||||
T Consensus        82 ~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKK  161 (866)
T KOG1062|consen   82 DNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKK  161 (866)
T ss_pred             CCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCcchhhHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCc---hhhHHHHHHHHHHHHHHHhccCCCCcC
Q 002083          165 AIMALHRFYQKSPSSVQHLVSNFRKRLCDNDPGVMGATLCPLFDLITVDV---NSYKDLVISFVSILKQVAERRLPKSYD  241 (969)
Q Consensus       165 A~lal~kiy~~~Pe~v~~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p---~~~~~Lv~~lv~iLk~l~~~~lp~~y~  241 (969)
                      |++|++|+.++.|++++++++.++++|||+|++|+.+++++++++|+.++   ..|+++++.|+.+|+++++.++|++||
T Consensus       162 A~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeyd  241 (866)
T KOG1062|consen  162 AALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYD  241 (866)
T ss_pred             HHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC
Confidence            99999999999999999999999999999999999999999999999865   479999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHHhCCCChHHHhhhHHHHHHhHhccCCCCCCCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 002083          242 YHQMPAPFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLIESAADVIARF  321 (969)
Q Consensus       242 y~~v~~PWlQikLLklL~~l~~~d~~~se~l~~iL~~iL~~~~~~~Ni~~AVlyEaik~I~~l~~~~~ll~~ai~~L~~f  321 (969)
                      ||++++||+||+|||+|+.|+..|++.++.|.++|.++.+++|+++|+|+||+|||++||+.|.+++.|+..++++|++|
T Consensus       242 v~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkF  321 (866)
T KOG1062|consen  242 VHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKF  321 (866)
T ss_pred             ccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCChhHHHHHHHHHHHHHhhChhHHHHhHHhhccccCCCchHHHHHHHHHhhcccCCCcHHHHHHHHHHHHhhcCChh
Q 002083          322 LKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNH  401 (969)
Q Consensus       322 L~s~d~NlrYvaL~~L~~I~~~~P~l~~~h~~~I~~cL~D~D~sIR~kaLdLL~~L~n~~Nv~~IV~eLl~yl~~~~D~~  401 (969)
                      |.++|+|+||+||..|.++++.+|.++++|+..|++||+|||.+|||+||||+|+|+|++||..+++||++|+.. .|++
T Consensus       322 L~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~-~d~~  400 (866)
T KOG1062|consen  322 LLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLES-SDED  400 (866)
T ss_pred             hcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHh-ccHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987 4999


Q ss_pred             hHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHHHHHHHHHHhCCC
Q 002083          402 YKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEP  481 (969)
Q Consensus       402 ~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~av~~l~~lL~d~  481 (969)
                      ||.+++.+|+.+||+|+|+..||||+|+++|+.+|++|.+++|++++++|+++|+        +.+++++.++...+...
T Consensus       401 ~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~--------e~~~y~~~rLy~a~~~~  472 (866)
T KOG1062|consen  401 FKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQ--------ELHEYAVLRLYLALSED  472 (866)
T ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCc--------chhhHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999998774        44556665555444332


Q ss_pred             ----CCchhHHHHHHHHhccccCC--CC-------CCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhcccc
Q 002083          482 ----KLPSVFLQVICWVLGEYGTA--DG-------KVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAGRK  548 (969)
Q Consensus       482 ----~~~e~l~~~i~WILGEY~~~--~~-------~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~~~  548 (969)
                          ...+.++++++|||||||++  ++       ++++++|++.+++.+..+..+.++|+|+|+|++||+++.+.    
T Consensus       473 ~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s----  548 (866)
T KOG1062|consen  473 TLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHS----  548 (866)
T ss_pred             hhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccc----
Confidence                23445689999999999963  22       57789999999999998888899999999999999998653    


Q ss_pred             CCCcHHHHHHHHHHhcCCChhHHhHHHHHHHHhcCCHHHHHhhCCCCCCCccccccccccchhHHHHHHHhcCCCCCCCC
Q 002083          549 VDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEIIMPADASCEDIEIDKNLSFLNGYVEQALEKGAQPYIPE  628 (969)
Q Consensus       549 ~~~~~~~~~lL~~~l~s~d~EVQqRA~Ey~~LL~~~~e~l~~vlP~d~s~ed~~~d~~lsfl~~~v~~~l~~Ga~~y~p~  628 (969)
                        ..+++++++..+..|.|.|+||||+||..|+..+..+.+.++|.+++||++.+|..+   +|+....+.+|++||.+-
T Consensus       549 --~~~ri~~lI~~~~~s~~~elQQRa~E~~~l~~~~~~lr~siLe~mp~~e~~~~~~~~---~g~~~~~i~~~~~p~~~~  623 (866)
T KOG1062|consen  549 --SSERIKQLISSYKSSLDTELQQRAVEYNALFAKDKHLRKSILERMPSCEDITVDARL---DGNGPAAIEQGAEPYKSA  623 (866)
T ss_pred             --cHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccccc---ccchHHHHHhccCCCccc
Confidence              257899999999999999999999999999998989999999999999999999887   899999999999999997


Q ss_pred             cccccccccCCCCcccccccccCccccccCCCCCCCCCCCCCcccccccCCCCCCCCCCCCccccccCCCCCCCCCCCCc
Q 002083          629 NERSGMLSVSNFRSQDQHEASIHGLRFEAYELPKPSVPSRPPVSLASATELAPVPEPSYPRVTQNVASVPSVSSADPSDL  708 (969)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~y~~p~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (969)
                      -++.+...-++...++..+...+.++|..|.+|....+++      .+++++|+|.+ +...-+.+. .-..++...+.-
T Consensus       624 ~~~~~~~~l~d~~~~~~~~~~~s~~~~l~~~L~~~~~~p~------~~~~~~p~p~~-~~~~~~~I~-~~~~s~~~~~~~  695 (866)
T KOG1062|consen  624 GESLGVAELSDLLPLDSKETPTSSLNDLEDLLDKDESSPG------ASNGAAPVPSE-GGNVLQDIL-GDVLSQSKNSKE  695 (866)
T ss_pred             ccccccchhhhccCCCCCcCCcccccchhccCCCccCCCC------CCCCCCCCCCC-ccchhhhhh-hccccccccchh
Confidence            7776665556776666666778999999999988654433      33455666655 222122221 112344555677


Q ss_pred             ceeecccccccCCCCCCCCCCCCCCCCcccccCcccccccccccccccccCcccCCCCCCCCCChHHHHHHHhhhCCC-C
Q 002083          709 RLRLDGVQKKWGRPTYTPSETSTSTSTSEKTVNGVTKVDAARDTIYSKVRDTTYDSRKPDAEIPLEKQKLAASLFGGS-S  787 (969)
Q Consensus       709 ~l~~~gv~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~la~~lf~g~-~  787 (969)
                      ++.|.|++-+|     ..      .+.+++++++...+       +++..+ +++++.+    +++|+.||++ |++. +
T Consensus       696 ~~~L~~~~~~~-----~~------~s~a~~~~s~~sp~-------~s~~~s-~l~~l~p----~p~~~~~~~~-~~~~~~  751 (866)
T KOG1062|consen  696 KLDLAGSLFVG-----SS------SSAAPPAPSGTSPS-------SSQPFS-LLSGLSP----DPSKNTLAAT-DYPSIK  751 (866)
T ss_pred             ccccccccccc-----cC------CCCCCCCcCCCCCc-------CCCcch-hhcccCC----Cccccccccc-cCCcce
Confidence            89999999999     10      12222333333111       334444 6777666    7899999999 8888 5


Q ss_pred             CCCCCCCCcCCCCCCCCccccccccccccccccccccccCCCCCcccccCCCccccCCCCCChhhhhhcccCCCCCCCCC
Q 002083          788 KTERRASTTGHRAGKASSHVIEKPQASKASDKTVAEKTIVQPPPDLLDLGEPAVLSRSPSIDPFKQLEGLLDSPQVPSNS  867 (969)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  867 (969)
                      ..++++....+...|+++.        +..++...--++.+|++|+.||+.|+.+... ..+++..++|.+.+++..   
T Consensus       752 ~~dkssl~~~~~~~k~~~n--------~~~t~i~~~~tn~s~~~~l~~F~~~aAv~ks-~ql~l~~~ss~~~~~~~~---  819 (866)
T KOG1062|consen  752 AYDKSSLLVELSFTKGPSN--------KKTTVITLTFTNLSPNTDLTDFHFQAAVPKS-LQLQLQPASSNSLPASGG---  819 (866)
T ss_pred             eeecccceeeeeeccCCCC--------CceeEEEeeccCCCCCcchhhhcccccchHH-HhhccCCccccccCcCCC---
Confidence            7888888888888888665        5555555455669999999999998766544 455555555555444333   


Q ss_pred             CCCCCCCCCCcchhhhccccCCCCCCCCccCCCCCCCCcccccccccccccCCCCCCCCcccccccccCCCchhhhhhhh
Q 002083          868 NHGAAGANKDSDIIGLHAETAGSGPSSGIVNPVPTNKNDLDLLSGLSNSTTNNALGGTPTAHSTQVSKGPNTKDSLEKDS  947 (969)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  947 (969)
                             ....+.|.++.++.   .+             .-+-.-+                 .-..+|-+.++..|.|.
T Consensus       820 -------g~~tq~~rv~n~~~---~~-------------l~~r~rl-----------------~~~~~G~s~~e~~ev~~  859 (866)
T KOG1062|consen  820 -------GHITQVLRVLNPQK---ST-------------LKLRLRL-----------------SYSLNGSSVLENFEVDN  859 (866)
T ss_pred             -------CcceeEEEEecCCC---ce-------------EEEEEEE-----------------EeecCCchHHhhhhhcc
Confidence                   44556777776651   00             0011111                 12456777799999999


Q ss_pred             hhhhccc
Q 002083          948 LVRQMGV  954 (969)
Q Consensus       948 ~~~~~~~  954 (969)
                      +.||+++
T Consensus       860 ~p~~~~~  866 (866)
T KOG1062|consen  860 LPRQLLQ  866 (866)
T ss_pred             CcccccC
Confidence            9999874

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG1932 consensus TATA binding protein associated factor [Transcription] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query969
1w63_A618 Ap1 Clathrin Adaptor Core Length = 618 3e-55
2jkr_A623 Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm 2e-38
2vgl_A621 Ap2 Clathrin Adaptor Core Length = 621 3e-38
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core Length = 618 Back     alignment and structure 
Iteration: 1

 Score =  213 bits (543), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 150/581 (25%), Positives = 281/581 (48%), Gaps = 35/581 (6%)
Query: 15  DLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGHDASFG 74
           +L+++I  AR++AEE  ++  E   ++    E D   R     + +L+Y+ MLG+ A FG
Sbjct: 14  ELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRN--VAKLLYMHMLGYPAHFG 71
Query: 75  YIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAV 134
            +  +K+        KR GYL   L L+E  D+ +L+ N I+ DL      +   AL  +
Sbjct: 72  QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTL 131
Query: 135 CKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRKRLCDN 194
             + + E    +  +V +LL  S   +R+KA +      +K P  ++  +   +  L + 
Sbjct: 132 GCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEK 191
Query: 195 DPGVMGATLCPLFDLITVD---VNSYKDLVISFVSILKQVAERRLPKSYDYHQMPAPFIQ 251
           + GV+  ++  L ++       +  ++ LV   V ILK +        +D   +  PF+Q
Sbjct: 192 NHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ 251
Query: 252 IRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYANPKLI 311
           +R+L++L +LG  D  +SE M  ++  +    ++S N+GNA+LYE +  +  I +   L 
Sbjct: 252 VRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 311
Query: 312 ESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTLKRKTF 371
             A +++ RFL ++  N++Y+ + +L + ++T     ++H+  ++DCL+D D ++KR+  
Sbjct: 312 VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAM 371
Query: 372 ELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKV 431
           EL + +   +N+  ++  ++ Y +   +  +K + AS     AE++APS  W I T+ +V
Sbjct: 372 ELSFALVNGNNIRGMMKELL-YFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRV 430
Query: 432 FEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSVFLQVI 491
              AG  V      NL++LI             ++ +  V+   + I         +QV 
Sbjct: 431 LTTAGSYVRDDAVPNLIQLITNSV---------EMHAYTVQRLYKAILGDYSQQPLVQVA 481
Query: 492 CWVLGEYGTADGKVSA--------SYITGKLCDVAEAY--SNDET--IKAYAITALMKIY 539
            W +GEYG  D  VS              ++ D+ E+   SN  T   + YA+TA+MK+ 
Sbjct: 482 AWCIGEYG--DLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKL- 538
Query: 540 AFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAV 580
                + R    +   + ++    +S   +LQQRA E  A+
Sbjct: 539 -----STRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNAL 574
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm( Phosphos)qikrllse Length = 623 Back     alignment and structure
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core Length = 621 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query969
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 1e-169
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 1e-146
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 1e-84
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 5e-52
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 7e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 4e-12
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-05
2db0_A253 253AA long hypothetical protein; heat repeats, hel 8e-05
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-04
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-11
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 9e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 6e-06
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-04
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 5e-07
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 3e-06
1qgr_A876 Protein (importin beta subunit); transport recepto 9e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 2e-04
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 3e-04
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 4e-04
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
 Score =  506 bits (1304), Expect = e-169
 Identities = 147/601 (24%), Positives = 281/601 (46%), Gaps = 34/601 (5%)

Query: 10  SKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRISEPDIPKRKMKEYIIRLVYVEMLGH 69
                +L+++I  AR++AEE  ++  E   ++    E D   R     + +L+Y+ MLG+
Sbjct: 9   PIRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRC--RNVAKLLYMHMLGY 66

Query: 70  DASFGYIHAVKMTHDDNLVLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCA 129
            A FG +  +K+        KR GYL   L L+E  D+ +L+ N I+ DL      +   
Sbjct: 67  PAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGL 126

Query: 130 ALNAVCKLINEETIPAVLPQVVELLGHSKEAVRRKAIMALHRFYQKSPSSVQHLVSNFRK 189
           AL  +  + + E    +  +V +LL  S   +R+KA +      +K P  ++  +   + 
Sbjct: 127 ALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKN 186

Query: 190 RLCDNDPGVMGATLCPLFDLITVD---VNSYKDLVISFVSILKQVAERRLPKSYDYHQMP 246
            L + + GV+  ++  L ++       +  ++ LV   V ILK +        +D   + 
Sbjct: 187 LLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGIS 246

Query: 247 APFIQIRLLKILALLGSGDKQASENMYTVVGDIFRKCDSSSNIGNAVLYECICCVSSIYA 306
            PF+Q+R+L++L +LG  D  +SE M  ++  +    ++S N+GNA+LYE +  +  I +
Sbjct: 247 DPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS 306

Query: 307 NPKLIESAADVIARFLKSDSHNLKYMGIDALGRLIKTSPEIAEQHQLAVIDCLEDPDDTL 366
              L   A +++ RFL ++  N++Y+ + +L + ++T     ++H+  ++DCL+D D ++
Sbjct: 307 ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSI 366

Query: 367 KRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQ 426
           KR+  EL + +   +N+  ++  ++ ++ S  +  +K + AS     AE++APS  W I 
Sbjct: 367 KRRAMELSFALVNGNNIRGMMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKRWHID 425

Query: 427 TMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLRIIGEPKLPSV 486
           T+ +V   AG  V      NL++LI             ++ +  V+   + I        
Sbjct: 426 TIMRVLTTAGSYVRDDAVPNLIQLITN---------SVEMHAYTVQRLYKAILGDYSQQP 476

Query: 487 FLQVICWVLGEYG----------TADGKVSASYITGKLCDVAEAYSNDETIKAYAITALM 536
            +QV  W +GEYG              +V+   +   L  V  +  +    + YA+TA+M
Sbjct: 477 LVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIM 536

Query: 537 KIYAFEIAAGRKVDMLPECQSLIEELSASHSTDLQQRAYELEAVTGLDAYAVEII---MP 593
           K+        R    +   + ++    +S   +LQQRA E  A+     +    +   MP
Sbjct: 537 KLST------RFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSALLERMP 590

Query: 594 A 594
            
Sbjct: 591 V 591
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query969
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.52
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.45
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.43
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.43
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.42
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.37
1qgr_A876 Protein (importin beta subunit); transport recepto 99.33
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.32
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.29
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.27
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.27
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.26
1qgr_A876 Protein (importin beta subunit); transport recepto 99.25
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.24
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.23
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.22
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.18
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.18
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.16
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.16
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.13
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.09
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.07
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.07
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.04
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.03
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.0
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.95
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.93
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.92
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.91
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.86
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.84
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.8
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.73
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.71
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.68
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.62
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.62
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.62
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.57
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.55
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.55
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.43
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.42
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.39
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.38
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.25
2x19_B963 Importin-13; nuclear transport, protein transport; 98.21
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 98.19
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.12
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.09
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.03
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.02
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.95
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.94
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.89
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.87
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.86
2x1g_F971 Cadmus; transport protein, developmental protein, 97.84
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.81
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.78
3nmz_A458 APC variant protein; protein-protein complex, arma 97.77
2x1g_F971 Cadmus; transport protein, developmental protein, 97.72
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.72
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.71
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.6
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.52
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.52
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.45
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.43
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.34
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.32
2x19_B963 Importin-13; nuclear transport, protein transport; 97.17
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 97.15
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.12
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.07
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 97.03
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 97.01
3grl_A651 General vesicular transport factor P115; vesicle t 96.91
3nmz_A458 APC variant protein; protein-protein complex, arma 96.91
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.69
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 96.47
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.46
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.33
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 96.3
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 96.3
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 96.27
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.11
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 95.86
3grl_A651 General vesicular transport factor P115; vesicle t 95.69
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 95.21
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 95.16
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 94.95
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 94.75
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 94.21
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 93.99
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 93.72
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 93.45
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 93.05
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 93.04
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 93.04
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 92.17
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 90.58
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 88.19
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 88.01
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 86.42
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 82.79
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 82.0
2b6c_A220 Hypothetical protein EF3068; structural genomis, D 80.86
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
Probab=100.00  E-value=2.6e-95  Score=877.98  Aligned_cols=560  Identities=24%  Similarity=0.411  Sum_probs=516.7

Q ss_pred             CchhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHHHHHcCCCCcchHHHHHHhhcCCCc
Q 002083            9 QSKEFLDLVKSIGEARSKAEEDRIVLNEIETLKRRIS-EPDIPKRKMKEYIIRLVYVEMLGHDASFGYIHAVKMTHDDNL   87 (969)
Q Consensus         9 ~sk~l~dlIk~Ir~~ks~~eE~~~I~~ElaeiR~~f~-~~~~~~~~~ke~l~KLiyl~mlG~Dvsf~~~~vIkl~sS~~~   87 (969)
                      -.|.|++||++||+|+++++|+++|++|+++||++|+ +++.+.++++++|.|+||++|+|+|++|+|++|+++++|+|+
T Consensus         9 ~~~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~   88 (621)
T 2vgl_A            9 GMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRY   88 (621)
T ss_dssp             CCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCH
T ss_pred             CchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCH
Confidence            4599999999999999999999999999999999999 567788889999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHhhhccCchHHHHHHHHHHhhhcCccHHHHHHHHHHHHcccccchHhhHHHHHHHhc--CCCChHHHHHH
Q 002083           88 VLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLIVCAALNAVCKLINEETIPAVLPQVVELL--GHSKEAVRRKA  165 (969)
Q Consensus        88 ~~KRlgYLals~~~~~~~dlllL~iNtLqKDL~s~N~~vralALr~Ls~I~~~el~~~l~~~V~~lL--~d~~pyVRKkA  165 (969)
                      ..||+||||++.+++.++|+++|+||+|+|||+|+|+++||+|||+||+|++++|++.+.+.|+++|  .|++|||||+|
T Consensus        89 ~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A  168 (621)
T 2vgl_A           89 TEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSA  168 (621)
T ss_dssp             HHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999  99999999999


Q ss_pred             HHHHHHHHhhCCcchh--hHHHHHHHhhcCCChhHHHHHHHHHHHhhhhCchhhHHHHHHHHHHHHHHHhc-cCC-CCcC
Q 002083          166 IMALHRFYQKSPSSVQ--HLVSNFRKRLCDNDPGVMGATLCPLFDLITVDVNSYKDLVISFVSILKQVAER-RLP-KSYD  241 (969)
Q Consensus       166 ~lal~kiy~~~Pe~v~--~l~~~l~~lL~D~D~~Vv~aAl~~L~ei~~~~p~~~~~Lv~~lv~iLk~l~~~-~lp-~~y~  241 (969)
                      ++|++|+|+.+|+.++  +|++.+.++|+|+|++|+.+|+++|++++..+++.|++++|.++++|++++.. .+| ++|+
T Consensus       169 ~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~  248 (621)
T 2vgl_A          169 ALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYT  248 (621)
T ss_dssp             HHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTE
T ss_pred             HHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchh
Confidence            9999999999999999  89999999999999999999999999999999999999999999999998764 477 9999


Q ss_pred             CCCCCChhHHHHHHHHHHHhCCC-ChHHHhhhHHHHHHhHhccC--------CCCCCCchHHHHHHHHHHhcCCCHHHHH
Q 002083          242 YHQMPAPFIQIRLLKILALLGSG-DKQASENMYTVVGDIFRKCD--------SSSNIGNAVLYECICCVSSIYANPKLIE  312 (969)
Q Consensus       242 y~~v~~PWlQikLLklL~~l~~~-d~~~se~l~~iL~~iL~~~~--------~~~Ni~~AVlyEaik~I~~l~~~~~ll~  312 (969)
                      ||++++||+|+++|++|+.|++. |++..+.++++|..+++...        .++|+++||+|||+++|+.+.++++++.
T Consensus       249 ~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~  328 (621)
T 2vgl_A          249 YYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV  328 (621)
T ss_dssp             ETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             hcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH
Confidence            99999999999999999999985 57788889999998886531        1236677999999999999999999999


Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHhhCh--hHHHHhHHhhccccC-CCchHHHHHHHHHhhcccCCCcHHHHHHH
Q 002083          313 SAADVIARFLKSDSHNLKYMGIDALGRLIKTSP--EIAEQHQLAVIDCLE-DPDDTLKRKTFELLYKMTKSSNVEVIVDR  389 (969)
Q Consensus       313 ~ai~~L~~fL~s~d~NlrYvaL~~L~~I~~~~P--~l~~~h~~~I~~cL~-D~D~sIR~kaLdLL~~L~n~~Nv~~IV~e  389 (969)
                      .+++.|++||.++++|+||++|++|.+|+..+|  .++++|+..|+.||+ |+|++||++||++|+.|+|++|++.|++|
T Consensus       329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~e  408 (621)
T 2vgl_A          329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAE  408 (621)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHH
Confidence            999999999999999999999999999999986  789999999999999 99999999999999999999999999999


Q ss_pred             HHHHHhhcCChhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHhhhCccchHHHHHHHHHHHhcccCCCccccchhHHHH
Q 002083          390 MIDYMISINDNHYKTEIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDNADSQLRSS  469 (969)
Q Consensus       390 Ll~yl~~~~D~~~k~eli~~I~~laekyap~~~W~Id~L~~ll~~~gd~v~~ev~~~li~lI~~~~g~~~~~~~p~lr~~  469 (969)
                      |++|+.+ .|.+||++++.+|+.+|++|+++..||+++|++++..+|+++..++|..++++|.+         +|++|++
T Consensus       409 L~~yl~~-~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~---------~~~~~~~  478 (621)
T 2vgl_A          409 MLSYLET-ADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN---------RDDVQGY  478 (621)
T ss_dssp             HHHHHHH-CCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG---------GCSCHHH
T ss_pred             HHHHHHh-cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC---------ChhHHHH
Confidence            9999987 68899999999999999999999999999999999999999999999999988863         4789999


Q ss_pred             HHHHHHHHhCCCCCchhHHHHHHHHhccccCCCC---CCChHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhhcc
Q 002083          470 AVESYLRIIGEPKLPSVFLQVICWVLGEYGTADG---KVSASYITGKLCDVAEAYSNDETIKAYAITALMKIYAFEIAAG  546 (969)
Q Consensus       470 av~~l~~lL~d~~~~e~l~~~i~WILGEY~~~~~---~~~~~~Il~~L~~~~~~~~e~~~Vk~~ILtAl~KL~~~~~~~~  546 (969)
                      ++..+++.++++...+.++++++||+||||+...   ...+.++++.+.+.+.  .++..||+++|+|++|+|.+.+   
T Consensus       479 ~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~--~~~~~v~~~~Lta~~Kl~~~~p---  553 (621)
T 2vgl_A          479 AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH--LCSVPTRALLLSTYIKFVNLFP---  553 (621)
T ss_dssp             HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHCG---
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHCh---
Confidence            9999999999998888888899999999998532   1235567777665553  6788999999999999998754   


Q ss_pred             ccCCCcHHHHHHHHHHhc--CCChhHHhHHHHHHHHhcCCHH
Q 002083          547 RKVDMLPECQSLIEELSA--SHSTDLQQRAYELEAVTGLDAY  586 (969)
Q Consensus       547 ~~~~~~~~~~~lL~~~l~--s~d~EVQqRA~Ey~~LL~~~~e  586 (969)
                         +..+.++.+|+.+..  +.|+||||||+||++||+.+.+
T Consensus       554 ---~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~  592 (621)
T 2vgl_A          554 ---EVKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVAST  592 (621)
T ss_dssp             ---GGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCS
T ss_pred             ---HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccCHH
Confidence               345677888888887  8999999999999999987643
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 969
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-118
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 4e-80
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 6e-05
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 1e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-04
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 9e-05
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 9e-04
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query969
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.52
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.35
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.31
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.12
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.02
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.01
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.98
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.98
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.97
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.92
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.81
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.78
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.75
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.66
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.65
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.64
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.63
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.61
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.59
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.54
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.54
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.24
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.21
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.82
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.72
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.59
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.58
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.57
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.16
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.87
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 96.74
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 96.48
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 90.35
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 89.18
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 82.67
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 81.23
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure