Citrus Sinensis ID: 002086
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 969 | 2.2.26 [Sep-21-2011] | |||||||
| Q9XSC3 | 912 | WD repeat-containing prot | yes | no | 0.468 | 0.497 | 0.317 | 6e-62 | |
| Q498F0 | 912 | WD repeat-containing prot | N/A | no | 0.447 | 0.475 | 0.321 | 4e-61 | |
| Q5JSH3 | 913 | WD repeat-containing prot | yes | no | 0.468 | 0.497 | 0.321 | 3e-60 | |
| Q6NVE8 | 915 | WD repeat-containing prot | yes | no | 0.468 | 0.496 | 0.317 | 3e-59 | |
| Q9R037 | 908 | WD repeat-containing prot | yes | no | 0.314 | 0.335 | 0.390 | 3e-59 | |
| Q6LA54 | 933 | Uncharacterized WD repeat | yes | no | 0.280 | 0.291 | 0.384 | 2e-55 | |
| Q03177 | 834 | WD repeat-containing prot | yes | no | 0.346 | 0.402 | 0.312 | 1e-40 | |
| O60136 | 586 | Uncharacterized WD repeat | no | no | 0.276 | 0.457 | 0.303 | 3e-39 | |
| P32330 | 852 | 2-deoxy-glucose resistant | no | no | 0.312 | 0.355 | 0.278 | 8e-26 | |
| Q498M4 | 334 | WD repeat-containing prot | no | no | 0.205 | 0.595 | 0.308 | 3e-19 |
| >sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 239 bits (611), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 165/520 (31%), Positives = 256/520 (49%), Gaps = 66/520 (12%)
Query: 266 SGNSVRSVRRSGNFASILSSSRLGAFFLIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQ 325
+G + R N L+ + A +IKNLDTG+E
Sbjct: 330 AGEVMGPQRPRSNSGRELTDEEILASVMIKNLDTGEEI---------------------P 368
Query: 326 LTMEEFEKSVGHSPVVKELMRRENVNRINDSAG-----KFSANSYLSKSLRMSKRRGAA- 379
L++ E + G +P+ +MRR ND+A K + + R+ ++
Sbjct: 369 LSLAEEKLPTGINPLTLHIMRRTKEYVSNDAAQSDDEEKLQSQQTDTDGGRLKQKTTQLK 428
Query: 380 --LLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWV--------KVR 429
L K++K H G++ +N + D+ +Q + + + K
Sbjct: 429 KFLGKSVKRAKHLAEEYGER-AVNKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAA 487
Query: 430 QSGKSYKDLSALHLCQEIQA-HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQEC----E 484
K D + + Q++ H G++WT+KFS R LASAG+D V+ +W ++
Sbjct: 488 HGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFN 547
Query: 485 VMSM---SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFS 541
M M +EG ++P +S K+ + G G PD + P
Sbjct: 548 NMRMKYNTEGRVSPSPSQESLNSSKSDTDTGVC---------SGTDEDPDDKNAP----- 593
Query: 542 LSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQ 601
++PFC + GH D+LDLSWS+++ LLSSSMDKTVRLW + + CL F H D+VT I
Sbjct: 594 FRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIA 653
Query: 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKG 658
F+P DD YF+SGSLD K+R+W+I D+ V W ++ +++TAA + +G+ A+IG++ G
Sbjct: 654 FHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDG 713
Query: 659 SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--G 716
C Y E K H V + RKITG + P +++LVTS DSRIR+ D
Sbjct: 714 RCIFYDTEHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRD 772
Query: 717 LDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVW 756
L + K++G+ N+SSQI A+F+ D Y++S SED VY+W
Sbjct: 773 LSLSMKYKGYVNSSSQIKASFSHDFNYLVSGSEDKYVYIW 812
|
Downstream effector for RAB11. May be involved in vesicle recycling. Bos taurus (taxid: 9913) |
| >sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (604), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 163/507 (32%), Positives = 249/507 (49%), Gaps = 73/507 (14%)
Query: 283 LSSSRLGAFFLIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVK 342
L+ + A +IKNLDTG+E L++ E + G +P+
Sbjct: 350 LTDDEILASVMIKNLDTGEEI---------------------PLSLAEEKLPTGINPLTL 388
Query: 343 ELMRRENVNRINDSA------------GKFSANSYLSKSLRMSKRRGAALLKNIKGVAHS 390
+MRR ND+A + K+ ++ K G K++K H
Sbjct: 389 YIMRRTKEYVSNDAAQSDDEEKPQSHQSETDGGKLKQKTTQLKKFLG----KSVKRAKHL 444
Query: 391 MSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWV--------KVRQSGKSYKDLSALH 442
G++ +N + D+ +Q + + + K K D +
Sbjct: 445 AEEYGER-AVNKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAAHGFKGPYDFEQIK 503
Query: 443 LCQEIQA-HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQEC-------EVMSMSEGNLT 494
+ Q++ H G++WT+KFS R LASAG+D V+ +W ++ + +EG ++
Sbjct: 504 VVQDLSGEHVGAVWTMKFSHCGRLLASAGQDNVVRIWVLKNAFDYFNNMRIKYNTEGRVS 563
Query: 495 PIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHL 554
P PS + + S DG G S D V + + PFC + GH
Sbjct: 564 P-SPSQESLNSSKSDTDG------------GVFSGTDDVDPDDKNAPFRQVPFCKYKGHT 610
Query: 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGS 614
D+LDLSWS+++ LLSSSMDKTVRLW + + CL F H D+VT I F+P DD YF+SGS
Sbjct: 611 ADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGS 670
Query: 615 LDAKVRIWSISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671
LD K+R+W+I D+ V W ++ +++TAA + +G++A+IG++ G C Y E K H
Sbjct: 671 LDGKLRLWNIPDKKVALWNEIDGQTKLITAANFCQNGKHAVIGTYDGRCIFYDTEHLKYH 730
Query: 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNT 729
V + RKITG + P +++LVTS DSRIR+ D L + K++G N+
Sbjct: 731 TQIHVRSTRGRNRVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGCVNS 789
Query: 730 SSQISAAFNADGKYIISASEDSQVYVW 756
SSQI A+F+ D YI+S SED VY+W
Sbjct: 790 SSQIKASFSHDFTYIVSGSEDKYVYIW 816
|
Downstream effector for rab11. May be involved in vesicle recycling. Xenopus laevis (taxid: 8355) |
| >sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 167/520 (32%), Positives = 256/520 (49%), Gaps = 66/520 (12%)
Query: 266 SGNSVRSVRRSGNFASILSSSRLGAFFLIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQ 325
+G + R N L+ + A +IKNLDTG+E
Sbjct: 331 AGEVMGPQRPRSNSGRELTDEEILASVMIKNLDTGEEI---------------------P 369
Query: 326 LTMEEFEKSVGHSPVVKELMRRENVNRINDSAG-----KFSANSYLSKSLRMSKRRGAA- 379
L++ E + G +P+ +MRR ND+A K + + R+ ++
Sbjct: 370 LSLAEEKLPTGINPLTLHIMRRTKEYVSNDAAQSDDEEKLQSQPTDTDGGRLKQKTTQLK 429
Query: 380 --LLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWV--------KVR 429
L K++K H G++ IN + D+ +Q + + + K
Sbjct: 430 KFLGKSVKRAKHLAEEYGER-AINKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAA 488
Query: 430 QSGKSYKDLSALHLCQEIQA-HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQEC----E 484
K D + + Q++ H G++WT+KFS R LASAG+D V+ +W ++
Sbjct: 489 HGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFN 548
Query: 485 VMSM---SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFS 541
M M +EG ++P SS K+ + G G PD + P
Sbjct: 549 NMRMKYNTEGRVSPSPSQESLSSSKSDTDTGVC---------SGTDEDPDDKNAP----- 594
Query: 542 LSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQ 601
++PFC + GH D+LDLSWS+++ LLSSSMDKTVRLW + + CL F H D+VT I
Sbjct: 595 FRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIA 654
Query: 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKG 658
F+P DD YF+SGSLD K+R+W+I D+ V W ++ +++TAA + +G+ A+IG++ G
Sbjct: 655 FHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDG 714
Query: 659 SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--G 716
C Y E K H V + RKITG + P +++LVTS DSRIR+ D
Sbjct: 715 RCIFYDTEHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRD 773
Query: 717 LDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVW 756
L + K++G+ N+SSQI A+F+ D Y++S SED VY+W
Sbjct: 774 LSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIW 813
|
Downstream effector for RAB11. May be involved in vesicle recycling. Homo sapiens (taxid: 9606) |
| >sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 165/520 (31%), Positives = 255/520 (49%), Gaps = 66/520 (12%)
Query: 266 SGNSVRSVRRSGNFASILSSSRLGAFFLIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQ 325
+G + R N L+ + A +IKNLDTG+E
Sbjct: 333 AGEVMGPQRPRSNSGRELTDEEILASVMIKNLDTGEEI---------------------P 371
Query: 326 LTMEEFEKSVGHSPVVKELMRRENVNRINDSAG-----KFSANSYLSKSLRMSKRRGAA- 379
L++ E + G +P+ +MRR ND+ K + + R+ ++
Sbjct: 372 LSLAEEKLPTGINPLTLHIMRRTKEYVSNDATQSDDEEKLQSQQTDTDGGRLKQKTTQLK 431
Query: 380 --LLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWV--------KVR 429
L K++K H G++ IN + D+ +Q + + + K
Sbjct: 432 KFLGKSVKRAKHLAEEYGER-AINKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAA 490
Query: 430 QSGKSYKDLSALHLCQEIQA-HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQEC----E 484
K D + + Q++ H G++WT+KFS R LASAG+D ++ +W ++
Sbjct: 491 HGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNIVRIWALKNAFDYFN 550
Query: 485 VMSM---SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFS 541
M M +EG ++P SS K+ + G G PD + P
Sbjct: 551 NMRMKYNTEGRVSPSPSQESLSSSKSDTDMGVC---------SGTDEDPDDKNAP----- 596
Query: 542 LSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQ 601
++PFC + GH D+LDLSWS+++ LLSSSMDKTVRLW + + CL F H D+VT I
Sbjct: 597 FRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIA 656
Query: 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKG 658
F+P DD YF+SGSLD K+R+W+I D+ V W ++ +++TAA + +G+ A+IG++ G
Sbjct: 657 FHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDG 716
Query: 659 SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--G 716
C Y E K H V + RKITG + P +++LVTS DSRIR+ D
Sbjct: 717 RCIFYDTEHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRD 775
Query: 717 LDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVW 756
L + K++G+ N+SSQI A+F+ D Y++S SED VY+W
Sbjct: 776 LSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIW 815
|
Downstream effector for RAB11. May be involved in vesicle recycling. Mus musculus (taxid: 10090) |
| >sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (587), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 192/333 (57%), Gaps = 28/333 (8%)
Query: 437 DLSALHLCQEIQA-HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQEC----EVMSM--- 488
D + + Q++ H G++WT+KFS R LASAG+D ++ +W ++ M M
Sbjct: 491 DFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNIVRIWALKNAFDYFNNMRMKYN 550
Query: 489 SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFC 548
+EG ++P SS K+ + G G PD + P ++PFC
Sbjct: 551 TEGRVSPSPSQESLSSSKSDTDMGVC---------SGTDEDPDDKNAP-----FRQRPFC 596
Query: 549 SFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDD 608
+ GH D+LDLSWS+++ LLSSSMDKTVRLW + + CL F H D+VT I F+P DD
Sbjct: 597 KYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDR 656
Query: 609 YFISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKGSCRLYSI 665
YF+SGSLD K+R+W+I D+ V W ++ +++TAA + +G+ A+IG++ G C Y
Sbjct: 657 YFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT 716
Query: 666 EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDIVHKF 723
E K H V + RKITG + P +++LVTS DSRIR+ D L + K+
Sbjct: 717 EHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKY 775
Query: 724 RGFRNTSSQISAAFNADGKYIISASEDSQVYVW 756
+G+ N+SSQI A+F+ D Y++S SED VY+W
Sbjct: 776 KGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIW 808
|
Downstream effector for RAB11. May be involved in vesicle recycling. Rattus norvegicus (taxid: 10116) |
| >sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 169/312 (54%), Gaps = 40/312 (12%)
Query: 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512
+IW +KFS D R+LA G+DR++ +W V + E ++ AS
Sbjct: 318 AIWAMKFSRDGRYLAVGGQDRILRIWAVLDSE-----------------HARSVASETCS 360
Query: 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSS 572
S PN P +++ VFS E P + GH D+LDLSWSR++ LLSSS
Sbjct: 361 SDPNNPK-------------LNLKAPVFS--EAPIREYAGHTADILDLSWSRNNFLLSSS 405
Query: 573 MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
MDKT RLW K CL F H+D+VT I F+P DD +F+SGSLD K+R+WSI ++ V W
Sbjct: 406 MDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSFW 465
Query: 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF 692
+L E++TA ++PDG A+ G+ G C Y + + K + K+TG
Sbjct: 466 NELPELITAVAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKVTGI 525
Query: 693 QF------SPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKYI 744
Q + + +E+LVT+ DSRIRI + D + KF+G N SQ A F+ DG Y+
Sbjct: 526 QTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLELKFKGHANAQSQNRAYFDDDGNYV 585
Query: 745 ISASEDSQVYVW 756
I SED QV++W
Sbjct: 586 ICGSEDHQVFIW 597
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 198/391 (50%), Gaps = 55/391 (14%)
Query: 414 EQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEG---------------SIWTIK 458
EQ +N ++K+ + K+ K L L QE+ A+EG +IW+ K
Sbjct: 121 EQFENYLREPKYIKMLKRRKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTK 180
Query: 459 FSLDARFLASAGEDRVIHVWEV-----QECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513
FS D +F+A+ +D I +W+V + E+ S +E N S+ + SSL+
Sbjct: 181 FSRDGKFMATGSKDGKIRIWKVIGSPVERAELDSSAESNKEARAKSM-RIKQQVSSLN-- 237
Query: 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSE-----KPFCSFIGHLDDVLDLSWSRSHLL 568
NP K+K+ S+ + E + +L P + H+ DVLD++WS+++ +
Sbjct: 238 --NP---KEKQFLDSATEKYEEKEKLLNLYAPVFHPTPLRLYKEHVQDVLDINWSKNNFI 292
Query: 569 LSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL 628
LS+SMDKTV+LW + K+ LK F H D+VTC++F+P DD +FISG LD K R+WSI D
Sbjct: 293 LSASMDKTVKLWHPDRKNSLKTFIHPDFVTCVEFHPTDDRFFISGCLDHKCRLWSILDDE 352
Query: 629 VVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRL-----------YSIEDSKLHQLNQV 676
V D +++T+ +P +G+ +IG+ G + + + D + + N
Sbjct: 353 VSFEYDCQDLITSVTLSPEEGKYTIIGTFNGYVHILMTRGLTPVSSFHVADRQTQEQNAH 412
Query: 677 DFQTKKKSSTR---KITGFQFSPS---NPSEVLVTSADSRIRILD--GLDIVHKFRGFRN 728
T+ S R ++TG Q S N ++VTS DSRIRI D ++ +GF +
Sbjct: 413 VMVTETDSKIRHGPRVTGLQAFRSQLDNSFRLVVTSNDSRIRIFDLEQRKLLEVLKGFHS 472
Query: 729 TSSQISAAFNA--DGKYIISASEDSQVYVWK 757
SSQ A + ++++S+D VY W+
Sbjct: 473 GSSQHKAQLSIWHGQPIVVNSSDDHWVYGWR 503
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 166/313 (53%), Gaps = 45/313 (14%)
Query: 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512
S+W + S ++LA+AG+D +I VW+V E TP ++ +L
Sbjct: 188 SVWASEISKSGKYLATAGKDAIIRVWKVIE-----------TP---------ERRETLLK 227
Query: 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSS 572
P + G+ +P + PE P +GH +VL +SWS++ LL+SS
Sbjct: 228 EGP------QSCGRFFTPSSIFEPE--------PVLECVGHNAEVLSISWSKNDFLLTSS 273
Query: 573 MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632
D+TVRLW ++ L +F HN+ VTC+ F+P+DD YF+SGSLD K+++WSI ++ W
Sbjct: 274 ADRTVRLWHPKSTKSLAVFRHNEIVTCVAFHPIDDRYFVSGSLDCKIQLWSILRHKILHW 333
Query: 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ-VDFQTKKKSSTRKITG 691
T+L +V+ C+ PDG++ ++G G C +Y E L ++ + + ++ ++TG
Sbjct: 334 TELEYVVSTICFYPDGESIVVGMFYGLCAIY--ETKNLQYVSSWLIHHSPSRNKKCRVTG 391
Query: 692 FQFSPSNPSE------VLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743
Q + P++ VLV++ D+ IR+ + + +V K + ++ + + D Y
Sbjct: 392 LQCASIIPNDSKSDNVVLVSTNDNAIRLYNTVTHALVLKLSDAHRVNGRVLSRLSEDNSY 451
Query: 744 IISASEDSQVYVW 756
IIS S+ ++V +W
Sbjct: 452 IISGSDTNEVVLW 464
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (299), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 158/348 (45%), Gaps = 45/348 (12%)
Query: 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEV-----------MSMSEGNLTPI 496
+ + SI FS D +++ +D +H+W+V V +S S N I
Sbjct: 170 ELFKNSICCCTFSHDGKYMVIGCKDGSLHLWKVINSPVKRSEMGRSEKSVSASRANSLKI 229
Query: 497 HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDD 556
L + S S+ + P + + K +H+ VF F F+ H D
Sbjct: 230 QRHLASISSHNGSISSNDLKPSDQFEGPSKQ-----LHLYAPVFY--SDVFRVFMEHALD 282
Query: 557 VLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD 616
+LD +WS++ L+++SMDKT +LW E K LK F H D+VT F P DD + I+G LD
Sbjct: 283 ILDANWSKNGFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIFFPNDDRFIITGCLD 342
Query: 617 AKVRIWSISDRLVVDWTDLHEMVTAACYT-PDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675
+ R+WSI D V D +++T+ + P G+ +IG+ G +Y + L ++
Sbjct: 343 HRCRLWSILDNEVSYAFDCKDLITSLTLSPPGGEYTIIGTFNG--YIYVLLTHGLKFVSS 400
Query: 676 VDFQTKKKSSTRK-----------------ITGFQ--FSPSNPS-EVLVTSADSRIRILD 715
K T K ITG Q FS + + ++VT+ DS+I+I D
Sbjct: 401 FHVSDKSTQGTTKNSFHPSSEYGKVQHGPRITGLQCFFSKVDKNLRLIVTTNDSKIQIFD 460
Query: 716 GLDI--VHKFRGFRNTSSQISAAF--NADGKYIISASEDSQVYVWKRE 759
+ + F+GF++ SS+ F + + + S+D Y WK +
Sbjct: 461 LNEKKPLELFKGFQSGSSRHRGQFLMMKNEPVVFTGSDDHWFYTWKMQ 508
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 110/214 (51%), Gaps = 15/214 (7%)
Query: 552 GHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDY 609
GH + D++WS S+LL+S+S DKT+++WD+ + CLK L H++YV C FNP +
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNL 143
Query: 610 FISGSLDAKVRIWSISDRLVVDWTDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668
+SGS D VRIW + + H + V+A + DG + S+ G CR++
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGF 726
+ +T ++ +FSP N +L + D+ +++ D + + G
Sbjct: 204 QC-------LKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 727 RNTSSQISAAFNA-DGKYIISASEDSQVYVWKRE 759
+N I A F+ GK+I+S SED+ VY+W +
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 289
|
Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 969 | ||||||
| 224090675 | 939 | predicted protein [Populus trichocarpa] | 0.914 | 0.943 | 0.608 | 0.0 | |
| 449448904 | 934 | PREDICTED: uncharacterized protein LOC10 | 0.919 | 0.953 | 0.564 | 0.0 | |
| 255573597 | 939 | WD-repeat protein, putative [Ricinus com | 0.917 | 0.946 | 0.585 | 0.0 | |
| 297827319 | 911 | WD-40 repeat family protein [Arabidopsis | 0.900 | 0.958 | 0.549 | 0.0 | |
| 225440346 | 912 | PREDICTED: WD repeat-containing protein | 0.895 | 0.951 | 0.557 | 0.0 | |
| 15224340 | 903 | transducin and WD-40 repeat-containing p | 0.901 | 0.967 | 0.542 | 0.0 | |
| 357505499 | 1049 | WD repeat-containing protein [Medicago t | 0.922 | 0.852 | 0.542 | 0.0 | |
| 356566476 | 887 | PREDICTED: uncharacterized protein LOC10 | 0.892 | 0.975 | 0.545 | 0.0 | |
| 15241815 | 905 | transducin/WD40 domain-containing protei | 0.900 | 0.964 | 0.548 | 0.0 | |
| 356524545 | 905 | PREDICTED: uncharacterized protein LOC10 | 0.894 | 0.958 | 0.531 | 0.0 |
| >gi|224090675|ref|XP_002309053.1| predicted protein [Populus trichocarpa] gi|222855029|gb|EEE92576.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/1010 (60%), Positives = 724/1010 (71%), Gaps = 124/1010 (12%)
Query: 7 MERKRTLTMTWDGLADVD-DVDDRFFETFDRISTAVPIDLASSDDDDEDFED-SRMSFVS 64
MERKRTLTM WD L D D D +DRFFET+DR+S+ VPIDL SS D++D D +RMSF S
Sbjct: 1 MERKRTLTMNWDALGDHDHDDEDRFFETYDRLSSVVPIDLNSSGSDEDDDFDDTRMSFAS 60
Query: 65 AVSSATHLHKHTTKKEFQNFARSAP-------GSMSPDYDVWMLAPGSITERRKRLFQDM 117
A+SS + EF+N+A +A S+SPDYD+WM APGSITERRKRL Q M
Sbjct: 61 AISS-------LSTSEFRNYAAAAATLSPKYSASVSPDYDIWMAAPGSITERRKRLLQGM 113
Query: 118 GLSRDRELLSFKVDDNNVNNNNNTNSHHEAPASVSKNKNNNNNCNIKESEETKQHNSNLN 177
GL+ ++ELL A + ++ N N I T H+
Sbjct: 114 GLNSNKELLKM------------------ASKGLMRDVTNKNIVVIDGDNSTIDHDH--- 152
Query: 178 PITQSHSESPVKRENSPTQENSPETTVVLVRSRSDGDIESLCIDKKRKEEMIGLISKQRL 237
I S K+E SP+ P V+LVRSRSDGDIES +D+KRKEE++GLISKQRL
Sbjct: 153 -IGDS------KQEASPSL---PLPAVLLVRSRSDGDIESFSVDRKRKEELLGLISKQRL 202
Query: 238 TRTSSMMLLQHAKVCPYQESVRVVSKDSSGNSVRSVRRSGNFASILSSSRLGAFFLIKNL 297
TRTSSM+++ H ++ P Q+S R+ KD+ R V S SI+S+SR GAFFLIKNL
Sbjct: 203 TRTSSMIIVSHGRIFPSQDSNRLSPKDARRE--RPVAHSSALTSIISNSRFGAFFLIKNL 260
Query: 298 DTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRIN--- 354
DTGKEFIVNEY ++GMWN+LSDLQTGKQLTMEEFEK VGHSPVVKELMRRENV+R+N
Sbjct: 261 DTGKEFIVNEYDQDGMWNRLSDLQTGKQLTMEEFEKCVGHSPVVKELMRRENVSRLNVTD 320
Query: 355 -DSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQK 413
+ K SANSYLSKSLRMSKRRGAALLKNIKGVA+SMS+ G +P ++
Sbjct: 321 EGNDRKISANSYLSKSLRMSKRRGAALLKNIKGVAYSMSMSGSSRIQDP---------KQ 371
Query: 414 EQKQNKN-VSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGED 472
E K +KN S+ W+KVRQ+GKSYK+LSALHLCQEIQAH GSIWTI+FS DARFLAS GED
Sbjct: 372 EPKLSKNSASSGWIKVRQTGKSYKELSALHLCQEIQAHRGSIWTIRFSSDARFLASGGED 431
Query: 473 RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS--- 529
R+IH+WEVQECEVMS+ +GNLTP+HPSLC+S+ SL +P E+KKK K SS
Sbjct: 432 RIIHIWEVQECEVMSLHDGNLTPLHPSLCSST---PSLGEVTPMSS-ERKKKWKASSSRK 487
Query: 530 ----PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETK 585
P+YVHVPETVFSLSEKP CSF GHLDDVLDLSWSRS LLLSSSMDKTVRLWDMETK
Sbjct: 488 GNPIPEYVHVPETVFSLSEKPVCSFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDMETK 547
Query: 586 SCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYT 645
SCLKLFAHNDYVTCIQFNPMD+ YFISGSLDAKVRIWSI DR +VDWTDLHEMVTA CYT
Sbjct: 548 SCLKLFAHNDYVTCIQFNPMDERYFISGSLDAKVRIWSIPDRQLVDWTDLHEMVTAVCYT 607
Query: 646 PDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT 705
PDGQ AL+GSHKGSCR+Y+ ED KL Q+ VD Q KK+S +KITGFQFSP NPSEVLVT
Sbjct: 608 PDGQGALVGSHKGSCRMYNAEDCKLSQMECVDVQNKKRSQAKKITGFQFSPGNPSEVLVT 667
Query: 706 SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR-NA 764
SADSR+RILDG ++VHKFRGFRN +SQISA+F++DGKY++SASEDS VY+WKREE R
Sbjct: 668 SADSRVRILDGSEVVHKFRGFRNINSQISASFSSDGKYVVSASEDSHVYIWKREEPRPRG 727
Query: 765 STGK-RAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRIS--SNPTSAT 821
TGK +++I TR+HE FQC+DVSVAIPW G VKG+PPP + +K+ +KR S S P SA+
Sbjct: 728 GTGKGKSVINTRSHESFQCRDVSVAIPWNGTVKGDPPPLQLHSKRQSKRSSAPSQPPSAS 787
Query: 822 SSPTK----------------------EGSPAGHSRRLLPPLPKKTNKVERVPSPPEEEL 859
+SPTK E SP +S+R LPPLP+K N ++ +PPEE L
Sbjct: 788 TSPTKEDAAVNSKRHFPPSANESPTREENSPVKNSKRQLPPLPRK-NSIDTSHTPPEEYL 846
Query: 860 SLISH-DPGISESFTSNSSSIRSGDSPSISTASETNSNSYSPRQDDPASISSSTDRNSSS 918
SLISH D G+ E F S+SSSIR GDSPSIS A P SS +
Sbjct: 847 SLISHSDSGLGELFASSSSSIRYGDSPSISAA--------------PTPSSSWSSSWLWL 892
Query: 919 FTNWSSWFDVGSHSSHTVQATAWGLVIVTATLGGEIKTYQNFGIPRRLGR 968
D GSH + TVQATAWGLVIVTATLGGEI+TYQNFG+PR++GR
Sbjct: 893 --------DGGSHGNQTVQATAWGLVIVTATLGGEIRTYQNFGLPRKIGR 934
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448904|ref|XP_004142205.1| PREDICTED: uncharacterized protein LOC101206616 [Cucumis sativus] gi|449502619|ref|XP_004161695.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101206616 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1012 bits (2616), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/997 (56%), Positives = 691/997 (69%), Gaps = 106/997 (10%)
Query: 7 MERKRTLTMTWDGLADVDDVDDRFFETFDRISTAVPIDLASSDDDDEDFEDSRMSFVSAV 66
MERK+T M WDGL D DD D RFFE+ +R+S A+P DLASS DD EDFEDSRMSF S V
Sbjct: 1 MERKKT--MNWDGLRDDDDDD-RFFESIERMSCAMPEDLASSSDD-EDFEDSRMSFASVV 56
Query: 67 SSATHLHKHTTKKEFQNFARSAPGSMSPDYDVWMLAPGSITERRKRLFQDMGLSRDRELL 126
SSA H EF+ FA ++P M+P+YD+WM APGSI ERRKRL Q MGL+ ++
Sbjct: 57 SSAKH-------DEFRTFAMTSP--MTPEYDIWMAAPGSIKERRKRLLQGMGLNSGKQFQ 107
Query: 127 SFKVDDNNVNNNNNTNSHHEAPASVSKNKNNNNNCNIKESEETKQHNSNLNPITQSHSES 186
+ E VS+ NN + P T E
Sbjct: 108 RLQ--------------SREFQRGVSRKLVNNTQIS--------------QPETVGSPEV 139
Query: 187 PVKRENSPTQENSPETTVVLVRSRSDGDIESLCIDKKRKEEMIGLISKQRLTRTSSMMLL 246
+++++P Q P ++LVRSRSDGDI++ I + RK++++G +SKQRLTRT SM++
Sbjct: 140 VDQKQDAPAQTPLP---IMLVRSRSDGDIDTFSISRTRKDDLLGNVSKQRLTRTYSMIMA 196
Query: 247 QHAKVCPYQESVRVVSKDSSGNSVRSVRRSGNFASILSSSRLGAFFLIKNLDTGKEFIVN 306
A++C Y ES+RV D S + + +++ S++RLGAFFLIKNLDTGKEFIVN
Sbjct: 197 SSARMCNYPESIRVSPNDCS----QQIGNGSTLSTVFSNNRLGAFFLIKNLDTGKEFIVN 252
Query: 307 EYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAG--KFSANS 364
Y ++GMWN+LSD+QTGKQLTMEEFEK VG+SPVV ELMRRENV+RIN G K + NS
Sbjct: 253 GYDQDGMWNRLSDIQTGKQLTMEEFEKCVGYSPVVTELMRRENVSRINGFFGDRKLNVNS 312
Query: 365 YLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNH 424
YLSKSLRMSKRRGAALLKNIKG + + D+E + L + + + S+
Sbjct: 313 YLSKSLRMSKRRGAALLKNIKGSMTGLIGEKDREI---HQALETKLSKNASSSSAPTSSE 369
Query: 425 WVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE 484
WVKVRQSGKSYK+LSALH CQEIQAHEGSIWT+KFS DAR LASAGEDRVIH+WEVQECE
Sbjct: 370 WVKVRQSGKSYKELSALHFCQEIQAHEGSIWTMKFSCDARLLASAGEDRVIHIWEVQECE 429
Query: 485 VMSM---SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS--------PDYV 533
VMSM EG++TP+HPS+C S D+ + D S+ + EK+KKGK S PDYV
Sbjct: 430 VMSMKPNEEGSMTPLHPSICPSPDRPAIGDASALSS--EKRKKGKGISGSRKGNVIPDYV 487
Query: 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSM-DKTVRLWDMETKSCLKLFA 592
HVPE+VFSLSEKP + GHLDDVLDLSWS LL SS DKTVRLWDMETKSCLK+FA
Sbjct: 488 HVPESVFSLSEKPIYTLNGHLDDVLDLSWSSDSQLLLSSSTDKTVRLWDMETKSCLKMFA 547
Query: 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNAL 652
HNDYVTC+QFNPMDDDYFISG+LDAKVRIW+I DR VVDWTDLHEMVTAA YTPDGQ A+
Sbjct: 548 HNDYVTCVQFNPMDDDYFISGALDAKVRIWNIPDRYVVDWTDLHEMVTAASYTPDGQGAV 607
Query: 653 IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIR 712
IG HKG+CR+YSIEDSKL Q +QVD Q+KKK+ +KITGFQF P +P+EVLVTSADSRIR
Sbjct: 608 IGCHKGTCRMYSIEDSKLEQKHQVDVQSKKKNHGKKITGFQFVPGSPTEVLVTSADSRIR 667
Query: 713 ILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAII 772
IL+G D+ H+FRGFRNTSSQI+A+F+ DGKY+I ASEDSQV+VWKREE RN ++ K+ ++
Sbjct: 668 ILEGTDVTHRFRGFRNTSSQITASFSQDGKYVICASEDSQVFVWKREEPRNPNSAKKGLM 727
Query: 773 TTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTK-EGSPA 831
R +EHF CKDVSVAIPWPGM+ GEPP + +K+H+KR + P SA SSPT+ E +
Sbjct: 728 AIRGYEHFPCKDVSVAIPWPGMISGEPPLVQMNSKRHSKRGLTQPASAGSSPTRDENNSI 787
Query: 832 GHSRRLLPPLPKKTNKVERV-------------PSPPEEELSLISHDPGISESFTSN--- 875
++++ LPPLPKK N +PP+EE + SES T
Sbjct: 788 ANNKKQLPPLPKKNNNAVENNNNNNNNNGGSTSTTPPDEEQQQQAQVTR-SESRTGESPS 846
Query: 876 ---SSSIRSGDSPSISTASETNSNSYSPRQDDPASISSSTDRNSSSFTNWSSWFDVG-SH 931
S+SIR GDSPS+S+++ ++N P S S S+ + FDVG SH
Sbjct: 847 SSPSASIRHGDSPSLSSSAAISNN--------PTSSSWSSSWSW---------FDVGNSH 889
Query: 932 SSHTVQATAWGLVIVTATLGGEIKTYQNFGIPRRLGR 968
H + ATAWGLVIVTA LGGEI+ YQNFG+PRR+GR
Sbjct: 890 GHHAIPATAWGLVIVTAGLGGEIRAYQNFGLPRRIGR 926
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573597|ref|XP_002527721.1| WD-repeat protein, putative [Ricinus communis] gi|223532862|gb|EEF34634.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 590/1007 (58%), Positives = 711/1007 (70%), Gaps = 118/1007 (11%)
Query: 7 MERKRTLTMTWDGLADVDDVDD-RFFETFDRISTAVPIDLASSDDDDEDFEDS-RMSFVS 64
MERK+T TM WD L D D DD RFFET DR+S+AVP+DLASS DD+D D R SF S
Sbjct: 1 MERKKTFTMNWDALGDHDVDDDDRFFETCDRLSSAVPLDLASSGSDDDDEFDDPRSSFAS 60
Query: 65 AVSSATHLHKHTTKKEFQNFAR-SAPGSMSPDYDVWMLAPGSITERRKRLFQDMGLSRDR 123
A+SS + TT EF+N+A +A ++SPDYDVWM APGSI ERRKRL Q MGLS D+
Sbjct: 61 AISSVS-----TT--EFRNYASVAAAAAISPDYDVWMAAPGSINERRKRLLQGMGLSADK 113
Query: 124 ELLSFKVDDNNVNNNNNTNSHHEAPASVSKNKNNNNNCNIKESEETKQHNSNLNPITQSH 183
ELL ++ ++T + H AP ++N ++ + E
Sbjct: 114 ELLRIASNELTRGVPDSTANGHVAP---------DSNGDVHDGE---------------- 148
Query: 184 SESPVKRENSPTQENSPETTVVLVRSRSDGDIESLCIDKKRKEEMIGLISKQRLTRTSSM 243
+K+E P+ VVLVRSRS DI+S ++KKR+EE++G +SKQRLTRTSSM
Sbjct: 149 ----LKQEAIPSH-----VPVVLVRSRSGCDIDSFSVEKKRREELLGNVSKQRLTRTSSM 199
Query: 244 MLLQHAKVCPYQESVRVVSKDSSGNSVRSVRRSGNFASILSSSRLGAFFLIKNLDTGKEF 303
+++ HA++CPYQ+S+RV K S+RS+ ++G+ A +LS +R GAFFLIKNLDTGKEF
Sbjct: 200 IIVSHARICPYQDSIRVSPK--GARSMRSLDQNGSIAPMLSHNRFGAFFLIKNLDTGKEF 257
Query: 304 IVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAG----K 359
+VNEY ++GMWN++SDLQTGKQLTMEEFEK VGHSPVVKELMRRENV+R+N K
Sbjct: 258 VVNEYDQDGMWNRVSDLQTGKQLTMEEFEKCVGHSPVVKELMRRENVSRMNGEEMSDDRK 317
Query: 360 FSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKG----DKECINPNPLLGDQREQKEQ 415
+ NSYLSKSLR+SKRRGAALLKNIKGVAHSMS+ G DKE + +P E K
Sbjct: 318 INTNSYLSKSLRLSKRRGAALLKNIKGVAHSMSITGLRGADKERESHSPTA----ESKAG 373
Query: 416 KQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVI 475
+N + S+ W+KVRQ+GKSYK+LSALHLCQEIQAH+GSIWTIKFS DARFLAS GEDR I
Sbjct: 374 AKNSS-SSGWMKVRQAGKSYKELSALHLCQEIQAHQGSIWTIKFSPDARFLASGGEDRTI 432
Query: 476 HVWEVQECEVMSMSEGNLTPIHP-SLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVH 534
H+WEVQECE+MS++EG LTP+HP S + SL + + P+YVH
Sbjct: 433 HIWEVQECEIMSLNEGTLTPLHPFSTTPCLGEVPSLASEKKKKKKGSSSRKCNPIPEYVH 492
Query: 535 VPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHN 594
V ETVFSLS+KP CSF GHLDDVLDLSWSRS LLLSSSMDKTVRLWDMETKSCLKLFAHN
Sbjct: 493 VSETVFSLSDKPVCSFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDMETKSCLKLFAHN 552
Query: 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIG 654
DYVTCIQFNPMDD+YFISGSLD KVRIWSI DR +VDWTDLHEMVTA CYTPDGQ ALIG
Sbjct: 553 DYVTCIQFNPMDDNYFISGSLDNKVRIWSIPDRQLVDWTDLHEMVTAVCYTPDGQGALIG 612
Query: 655 SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714
SHKGSCR+Y++ED KL Q Q+D Q KK + +KITGFQFSP NPSEVLVTSADSRIRIL
Sbjct: 613 SHKGSCRMYNVEDCKLSQGEQIDLQNKKHA--KKITGFQFSPGNPSEVLVTSADSRIRIL 670
Query: 715 DGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITT 774
DG D+ HKFRGFRN +SQISA+F+ DGKY+I ASEDS VYVWKR+E R+ + ++II T
Sbjct: 671 DGSDVAHKFRGFRNINSQISASFSTDGKYVICASEDSHVYVWKRDE-RSGNGKSKSIINT 729
Query: 775 RNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRIS-SNPTSATSSPTK------- 826
R+HE+FQCKDVS+AIPWPG +KG+PP V +K+H+KR S S PTS+ SSPTK
Sbjct: 730 RSHENFQCKDVSMAIPWPGTIKGDPPLVKVHSKRHSKRSSISQPTSSCSSPTKEDALSVS 789
Query: 827 -----------------EGSPAGHSRRLLPPLPKK-------TNKVERVPSPPEEELSLI 862
E + A +S+RLLPPLPKK TN VER PSP E+ ++
Sbjct: 790 SRRYFPPSPIDCLAREEENTSAANSKRLLPPLPKKNNNHHNNTNNVERAPSPEEDPSAIS 849
Query: 863 SHDPGISE-SFTSNSSSIRSGDSPSISTASETNSNSYSPRQDDPASISSSTDRNSSSFTN 921
D G + TS SSSIR GDSPSIS A ++S+ S
Sbjct: 850 RSDSGFGDSFSTSASSSIRYGDSPSISAAQSSSSSWSSSWSW------------------ 891
Query: 922 WSSWFDVGSHSSHTVQATAWGLVIVTATLGGEIKTYQNFGIPRRLGR 968
FDVG ++ +QATAWG+VIVTATLGGE++ YQNFG+PRR+GR
Sbjct: 892 ----FDVGGGHANQIQATAWGMVIVTATLGGELRAYQNFGLPRRIGR 934
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827319|ref|XP_002881542.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297327381|gb|EFH57801.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 961 bits (2485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/1000 (54%), Positives = 688/1000 (68%), Gaps = 127/1000 (12%)
Query: 1 MTKMEKMERKRTLTMTWDGLADVDDVDDRFFE-TFDRISTAVPIDL--ASSDDDDEDFED 57
M K++RK+T+TM W+GL D +D DD F T DR+S+A+ D+ ASS D+DEDF+D
Sbjct: 2 MEDGNKLDRKKTMTMNWEGLGDFEDEDDDRFFETHDRLSSALAFDMSAASSSDEDEDFDD 61
Query: 58 SRMSFVSAVSSATHLHKHTTKKEFQNFARSAPGSMSPDYDVWMLAPGSITERRKRLFQDM 117
R+SF SAVSS T T ++F+ A MSPDYD+WM APGSI+ERR+RL M
Sbjct: 62 CRLSFSSAVSSLT-----TASRKFRTPA------MSPDYDIWMAAPGSISERRRRLLHGM 110
Query: 118 GLSRDRELLSFKVDDNNVNNNNNTNSHHEAPASVSKNKNNNNNCNIKESEETKQHNSNLN 177
GL +++++S +VS + +N + E+ K +N
Sbjct: 111 GLVSNKDMVS----------------------AVSIRRVVSNAAIVTNGEDKKMKKKIMN 148
Query: 178 PITQSHSESPVKRENSPTQENSPETTVVLVRSRSDGDIESLCIDKKRKEEMIGLISKQRL 237
SE P ++ P V+L RSRS+ DIE I+K+RKEE++G ISKQRL
Sbjct: 149 GEVDDESEIPQDHDHVP---------VMLARSRSESDIERFLIEKRRKEEILGKISKQRL 199
Query: 238 TRTSSMMLLQHAKVCPYQESVRVVSKDSSGNSVRSVRRSGN--FASILSSSRLGAFFLIK 295
TRT S + + ++C YQ +R + + +++R G+ S++S++RLGAFFLIK
Sbjct: 200 TRTYSTIGVTRTRICQYQTPIR--QSPAVCRNGKALRGGGSDALTSVMSNARLGAFFLIK 257
Query: 296 NLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRIND 355
NLDTGKEFIVNEY E+GMWN+LSDLQTGKQLT+EEFEK VG+SPVVKELMRRENVNRIN
Sbjct: 258 NLDTGKEFIVNEYDEDGMWNRLSDLQTGKQLTLEEFEKCVGYSPVVKELMRRENVNRINY 317
Query: 356 S----AGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVK-GDKECINPNPLLGDQR 410
KF NSYLSKS+R+SKRRGAALLKNIKGVAHSMS++ DK+ + +
Sbjct: 318 EPLMDLRKF--NSYLSKSVRLSKRRGAALLKNIKGVAHSMSLRVADKDVSDGS----TDS 371
Query: 411 EQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG 470
+K + +N WVKVR +GKSYK+LSALH+CQEIQAHEG++WTIKFS DA +LAS G
Sbjct: 372 PKKGKDHKHGKANEWVKVRPTGKSYKELSALHMCQEIQAHEGAVWTIKFSQDAHYLASGG 431
Query: 471 EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS- 529
DRVIHVWEVQECE+MSM+EG+LTPIHPSLC+S+ ++ EKK+KGK SS
Sbjct: 432 ADRVIHVWEVQECELMSMNEGSLTPIHPSLCDSAGNEITV--------VEKKRKGKGSSG 483
Query: 530 ------PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDME 583
PDYVHVPETVFS S+KP CS GHLD +LDLSWS+S LLLSSSMDKTVRLWD+E
Sbjct: 484 RRNNHIPDYVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQLLLSSSMDKTVRLWDLE 543
Query: 584 TKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAAC 643
TK+CLKLFAHNDYVTCIQF+P+D++YF+SGSLDAK+RIWSI DR VV+W+DLHEMVTAAC
Sbjct: 544 TKTCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDLHEMVTAAC 603
Query: 644 YTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS-STRKITGFQFSPSNPSEV 702
YTPDGQ ALIGSHKG CR Y ED KL Q +Q+D Q+ KKS + RKIT FQFSP NPSEV
Sbjct: 604 YTPDGQGALIGSHKGICRAYDTEDCKLSQTSQIDVQSNKKSQAKRKITSFQFSPVNPSEV 663
Query: 703 LVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762
LVTSADSRIRILDG +++HKF+GFRNT SQ+SA+++ DGKYII ASEDSQVY+WK + R
Sbjct: 664 LVTSADSRIRILDGSEVIHKFKGFRNTCSQLSASYSQDGKYIICASEDSQVYLWKNDFQR 723
Query: 763 NASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRI--SSNPTSA 820
ST +TT++HEHF CKDVS A+PW G V+GEPPP + +K+H+KRI SS P+S
Sbjct: 724 TRST-----LTTQSHEHFHCKDVSAAVPWHGHVRGEPPPVQIHSKRHSKRISTSSQPSST 778
Query: 821 TSSPTKEGSPAG-------HSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFT 873
SPT+E + A + + LPP+PKK ++ PEEE + G SESF
Sbjct: 779 IGSPTREETSAAAPTTSNRNKKSGLPPMPKKAATKSQI--QPEEE---AGPELGSSESFR 833
Query: 874 SNSS-----SIRSGDSPSISTASETNSNSYSPRQDDPASISSSTDRNSSSFTNWSSWFDV 928
S+ + S R G+SPSI+T SS ++W SWFD
Sbjct: 834 SSMNGSEQHSSRFGESPSINT--------------------------SSRLSSW-SWFDS 866
Query: 929 GSHSSHTVQATAWGLVIVTATLGGEIKTYQNFGIPRRLGR 968
G H T+Q TAWG+VIVTAT+ GEI++YQNFG+PRR+GR
Sbjct: 867 GGHGPQTIQPTAWGMVIVTATVHGEIRSYQNFGLPRRIGR 906
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440346|ref|XP_002270206.1| PREDICTED: WD repeat-containing protein 44-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/990 (55%), Positives = 664/990 (67%), Gaps = 122/990 (12%)
Query: 11 RTLTMTWDGLADVDDVDDRFFETFDRISTAVPIDLASSDDDDEDFEDSRMSFVSAVSSAT 70
RTLT+ W GL + +D DD FFE+FDRIS+AVP+DLASSDDDD++F+D+RMSF SA+SS
Sbjct: 4 RTLTVNWYGLEEDED-DDHFFESFDRISSAVPLDLASSDDDDDEFDDTRMSFASAISSVP 62
Query: 71 ----HLHKHTTKKEFQNFARSAPGSMSPDYDVWMLAPGSITERRKRLFQDMGLSRDRELL 126
++ S S DY +WM PGSI ERRKRL Q MGL+ ++E +
Sbjct: 63 TQEFRAFAAAAAAAATAAPPASETSSSDDYGMWMAEPGSIQERRKRLLQGMGLTSEKEFI 122
Query: 127 SFKVDDNNVNNNNNTNSHHEAPASVSKNKNNNNNCNIKESEETKQHNSNLNPITQSHSES 186
ASV K + TK N + PI
Sbjct: 123 RL--------------------ASV----------GFKRAASTKVGNCEVTPIAVDTC-- 150
Query: 187 PVKRENSPTQENSPETT-VVLVRSRSDGDIESLCIDKK-RKEEMIGLISKQRLTRTSSMM 244
S +E P+ VV VRSRSDGD+E+ + K RK++++G I K LTRTSS +
Sbjct: 151 ------STEEEAKPQLVPVVHVRSRSDGDMEAFSANTKHRKKQLLGEIKKLCLTRTSSSL 204
Query: 245 LLQHAKVCPYQESVRVVSKDSSGNSVRSVRRSGNFASILSSSRLGAFFLIKNLDTGKEFI 304
++ Y S+ V K++ G SVR ++++S SR GAFFLIKNLDTGKEFI
Sbjct: 205 STPCPRIGQYDNSITVSEKEAEGGC--SVRSGDPLSTMVSKSRFGAFFLIKNLDTGKEFI 262
Query: 305 VNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAG------ 358
V E+ E+GMWN+LSDLQTGKQLTMEEFEKSVG+SPVVKELMRR+NV RI D G
Sbjct: 263 VKEFDEDGMWNRLSDLQTGKQLTMEEFEKSVGYSPVVKELMRRQNVVRITDGIGIGGSER 322
Query: 359 KFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQN 418
K S NSY++KS R SKRRG ALLKNIKGVA+S + ++E P L +E K +
Sbjct: 323 KPSMNSYITKSFRFSKRRGVALLKNIKGVANSFISEREREI----PSL------QEAKSS 372
Query: 419 KNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVW 478
KN S+ W+KVRQ GKSYK+L+ALHLCQEIQAHEGSIWTI+FS D R+LASAGEDR+IHVW
Sbjct: 373 KNSSSEWIKVRQHGKSYKELTALHLCQEIQAHEGSIWTIRFSSDGRYLASAGEDRIIHVW 432
Query: 479 EVQECEVMSMS---EGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK--------- 526
EVQECE E N TP+HP SSD+ P PE +
Sbjct: 433 EVQECEATPWKPPDELNSTPLHPMALGSSDRP---------PLPETPISAERKKKGKMSS 483
Query: 527 -----HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWD 581
HS PDY+H+PETVFSL E P CSF GHLDDVLDLSWS S LLLSSSMDKTVRLWD
Sbjct: 484 SSRKGHSIPDYIHMPETVFSLLEIPVCSFKGHLDDVLDLSWSGSQLLLSSSMDKTVRLWD 543
Query: 582 METKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTA 641
METKSCLKLFAHNDYVTCIQFNPMDD YFISGSLDAKVRIWSI DR VVDWTDLHEMVTA
Sbjct: 544 METKSCLKLFAHNDYVTCIQFNPMDDKYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTA 603
Query: 642 ACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701
A YTPDGQ ALIG H+GSCR+YSI+D KL+Q Q+D Q KKKS T+KITGFQF+P NPSE
Sbjct: 604 ASYTPDGQGALIGLHQGSCRMYSIDDGKLNQTGQIDIQNKKKSQTKKITGFQFAPGNPSE 663
Query: 702 VLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761
VL+TSADSRIRI DG DI+HKFRGFRNTSSQISA+F+ DGKY+ISASEDSQVYVW+R+E
Sbjct: 664 VLITSADSRIRIFDGSDIIHKFRGFRNTSSQISASFSQDGKYVISASEDSQVYVWRRDEV 723
Query: 762 RNASTGK-RAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSA 820
R+ GK ++++TTR+HEHFQ +DVSVAIPWPG VKGEPP PV +K+H+KR +
Sbjct: 724 RHIGAGKGKSLVTTRSHEHFQSRDVSVAIPWPGSVKGEPPVVPVHSKRHSKR-------S 776
Query: 821 TSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSNSSSIR 880
S+ ++ S G ++ LPPLPKK + ++R+P+ PEEE++ DPGI S + +SSS
Sbjct: 777 GSTSQEDSSTDGSNKAQLPPLPKKNSSLDRMPTCPEEEMTSC-LDPGIGSSESFSSSSAS 835
Query: 881 S--GDSPSISTASETNSNSYSPRQDDPASISSSTDRNSSSFTNWSSWFDVGSHSSHTVQA 938
GDSPSIS++ + + FD SH SHTVQA
Sbjct: 836 ISYGDSPSISSSGNSLPSWSPSWSW----------------------FDGSSHGSHTVQA 873
Query: 939 TAWGLVIVTATLGGEIKTYQNFGIPRRLGR 968
TAWGLV+VTA +GGEI+ YQNFG+P R+GR
Sbjct: 874 TAWGLVVVTAGVGGEIRAYQNFGVPLRIGR 903
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15224340|ref|NP_181303.1| transducin and WD-40 repeat-containing protein [Arabidopsis thaliana] gi|3236249|gb|AAC23637.1| putative WD-40 repeat protein [Arabidopsis thaliana] gi|330254338|gb|AEC09432.1| transducin and WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/992 (54%), Positives = 670/992 (67%), Gaps = 118/992 (11%)
Query: 1 MTKMEKMERKRTLTMTWDGLADVDDVDDRFFE-TFDRISTAVPIDLASSDDDDEDFED-- 57
M K++RK+T+TM W+GL D +D DD F T DR+S+A+ D+A++ DED +
Sbjct: 1 MEDGNKLDRKKTMTMNWEGLGDFEDEDDDRFFETHDRLSSALTFDMANASSSDEDEDFDD 60
Query: 58 SRMSFVSAVSSATHLHKHTTKKEFQNFARSAPGSMSPDYDVWMLAPGSITERRKRLFQDM 117
R+SF SAVSS T T ++F+ A MSPDYD+WM APGSI+ERR+RL M
Sbjct: 61 CRLSFSSAVSSLT-----TASRKFRTPA------MSPDYDIWMAAPGSISERRRRLLHGM 109
Query: 118 GLSRDRELLSFKVDDNNVNNNNNTNSHHEAPASVSKNKNNNNNCNIKESEETKQHNSNLN 177
GL+ +++++S V+N AP + + E +E
Sbjct: 110 GLASNKDMVSAVSIRRVVSN---------APVVSNGEEKKMKKKMNHEVDE--------- 151
Query: 178 PITQSHSESPVKRENSPTQENSPETTVVLVRSRSDGDIESLCIDKKRKEEMIGLISKQRL 237
Q H P V+L RSRS+ DIE I+K+RKEE++G ISKQRL
Sbjct: 152 ---QDHDHVP----------------VMLARSRSESDIERFLIEKRRKEEILGKISKQRL 192
Query: 238 TRTSSMMLLQHAKVCPYQESVRVVSKDSSGNSVRSVRRSGN-FASILSSSRLGAFFLIKN 296
TRT S + ++C YQ +R + GN +++R G S++S++R+GAFFLIKN
Sbjct: 193 TRTYSTICPTRTRICQYQTPIR-QTPAVCGNG-KALRGGGEALTSVMSNARVGAFFLIKN 250
Query: 297 LDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDS 356
LDTGKEFIVNEY E+GMWN+LSDLQTGKQLT+EEFEK VG+SPVVKELMRRENVNRIN
Sbjct: 251 LDTGKEFIVNEYDEDGMWNRLSDLQTGKQLTLEEFEKCVGYSPVVKELMRRENVNRINYE 310
Query: 357 ----AGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVK-GDKECINPNPLLGDQRE 411
KF NSYLSKS+R+SKRRGAALLKNIKGVAHSMS++ DK+ + +
Sbjct: 311 PLMDLRKF--NSYLSKSVRLSKRRGAALLKNIKGVAHSMSLRVADKDVSDGS----TDSP 364
Query: 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGE 471
+K + +N WVKVR +GKSYK+LSALH+CQEIQAHEG++WTIKFS DA +LAS G
Sbjct: 365 KKGKDHKHGKANEWVKVRPTGKSYKELSALHMCQEIQAHEGAVWTIKFSQDAHYLASGGA 424
Query: 472 DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531
DRVIHVWEVQECE+MSM+EG+LTPIHPSLC+SS ++ ++ H PD
Sbjct: 425 DRVIHVWEVQECELMSMNEGSLTPIHPSLCDSSGNEITVVEKKKKGKGSSGRRHNH-IPD 483
Query: 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF 591
YVHVPETVFS S+KP CS GHLD +LDLSWS+S LLLSSSMDKTVRLWD+ETK+CLKLF
Sbjct: 484 YVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQLLLSSSMDKTVRLWDIETKTCLKLF 543
Query: 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNA 651
AHNDYVTCIQF+P+D++YF+SGSLDAK+RIWSI DR VV+W+DLHEMVTAACYTPDGQ A
Sbjct: 544 AHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDLHEMVTAACYTPDGQGA 603
Query: 652 LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS-STRKITGFQFSPSNPSEVLVTSADSR 710
LIGSHKG CR Y ED KL Q NQ+D Q+ KKS + RKIT FQFSP NPSEVLVTSADSR
Sbjct: 604 LIGSHKGICRAYDTEDCKLSQTNQIDVQSNKKSQAKRKITSFQFSPVNPSEVLVTSADSR 663
Query: 711 IRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRA 770
IRILDG +++HKF+GFRNT SQ+SA+++ DGKYII ASEDSQVY+WK + HR ST
Sbjct: 664 IRILDGSEVIHKFKGFRNTCSQLSASYSQDGKYIICASEDSQVYLWKNDFHRTRST---- 719
Query: 771 IITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKR---------ISSNPTSAT 821
+TT++HEHF CKDVS A+PW G V+GEPPP + +K+H+KR S+PT
Sbjct: 720 -LTTQSHEHFHCKDVSAAVPWHGHVRGEPPPVQIHSKRHSKRISTSSQPSSTISSPTKEE 778
Query: 822 SSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTS--NSS-- 877
+S T + + + LPP+PKK ++ PEEE + G SESF S NSS
Sbjct: 779 TSATGPTTSNRNKKSGLPPMPKKAATKSQI--QPEEE---AGPELGSSESFRSSMNSSEQ 833
Query: 878 -SIRSGDSPSISTASETNSNSYSPRQDDPASISSSTDRNSSSFTNWSSWFDVGSHSSHTV 936
S R G+SPSI+T SS ++W SWFD G H T+
Sbjct: 834 HSSRFGESPSINT--------------------------SSRLSSW-SWFDSGGHGPQTI 866
Query: 937 QATAWGLVIVTATLGGEIKTYQNFGIPRRLGR 968
Q TAWG+VIVTAT+ GEI++YQNFG+PRR+GR
Sbjct: 867 QPTAWGMVIVTATVHGEIRSYQNFGLPRRIGR 898
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505499|ref|XP_003623038.1| WD repeat-containing protein [Medicago truncatula] gi|358345001|ref|XP_003636573.1| WD repeat-containing protein [Medicago truncatula] gi|355498053|gb|AES79256.1| WD repeat-containing protein [Medicago truncatula] gi|355502508|gb|AES83711.1| WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/1007 (54%), Positives = 692/1007 (68%), Gaps = 113/1007 (11%)
Query: 7 MERKRTLTMTWDGLADVDDVDDRFFETFDRISTAVPIDLASSDDDDEDFEDSRMSFVSAV 66
MER++TLTM WD D+ D FFET++R+STAVP DLASS D+D+D+EDSR+SF SAV
Sbjct: 1 MERRKTLTMNWD-GLGDDEDDLHFFETYNRLSTAVPDDLASSSDEDDDYEDSRLSFASAV 59
Query: 67 SSATHLHKHTTKKEFQNFARSAPGSMSPDYDVWMLAPGSITERRKRLFQDMGLSRDRE-- 124
SS H KH K E A G ++P+YD+WM APGSITERR+RL MGL ++E
Sbjct: 60 SSF-HPSKHR-KPELP----PATG-IAPNYDIWMAAPGSITERRRRLLGSMGLDENKENL 112
Query: 125 -----LLSFKVDDNNVNNNNNTNSHHEAPASVSKNKNNNNNCNIKESEETKQHNSNLNPI 179
++S + N NNN +H + N +N+ + S + + N
Sbjct: 113 KATSIVISRAITKKFENKNNNQETH------LWSNSVKDNSSSSSSSSSSSSSLVSANIT 166
Query: 180 TQSHSESPVKRENSPTQE-NSPETTVVLVRSRSDGDIESLCIDKKRKEEMIGLISKQRLT 238
T S SP Q+ + ++ VLVRSRS+GDI+S K RKEE+IG ISKQRLT
Sbjct: 167 TSS---------GSPQQKSDHSHSSYVLVRSRSEGDIDSFTT-KLRKEEIIGKISKQRLT 216
Query: 239 RTSSMMLLQHAKVCPYQESV-RVVSKDSSGNSVRSVRRSGNFASILSSSRLGAFFLIKNL 297
RT++ + + A C + R++ +DS +SVR + + + SSS LGAFFLIKNL
Sbjct: 217 RTNTDIGM--ASTCARHADINRIIVRDSGDSSVRHLPSASPM--VTSSSGLGAFFLIKNL 272
Query: 298 DTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSA 357
DTGKEFIV EY ENG WN+LSDL+TGKQLTMEEFE ++GH+ + +LMRR N R N
Sbjct: 273 DTGKEFIVKEYGENGTWNRLSDLETGKQLTMEEFENTIGHNQFINDLMRRRNYGRNNGYG 332
Query: 358 GKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQ 417
K ++SY+S+SLR+SKRRGA+LLKNIKGVA + + ++E + P + DQ K Q +
Sbjct: 333 KKLGSDSYISRSLRLSKRRGASLLKNIKGVASGIVGEREREVVVPQVV--DQ--NKTQGK 388
Query: 418 NKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHV 477
NK WVKVRQSGKS K+LSALHLCQE QAHEG IWT+KFSLD RFLA+AGED+VIH+
Sbjct: 389 NK-----WVKVRQSGKSQKELSALHLCQEFQAHEGCIWTMKFSLDGRFLATAGEDKVIHI 443
Query: 478 WEVQECEVMSM--SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS------ 529
WEVQECEVMSM EGNLTPIHPSL +S ++ ++D S KKKGK S
Sbjct: 444 WEVQECEVMSMRGEEGNLTPIHPSLLSSMEREKNVDTHS-----LVKKKGKFGSKRGGGS 498
Query: 530 ---PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS 586
P+YVHVPE VF+ SEKP+CSF GHLD+VLDLSWSRS LLLSSSMDKTVRLWD+ETK+
Sbjct: 499 AAIPEYVHVPENVFTFSEKPYCSFHGHLDEVLDLSWSRSQLLLSSSMDKTVRLWDLETKT 558
Query: 587 CLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTP 646
CLK FAHNDYVTC+QFNPMD+DYFISGSLDAKVR+W+IS RLVVDWTD+HEMVTA YTP
Sbjct: 559 CLKFFAHNDYVTCVQFNPMDEDYFISGSLDAKVRMWNISARLVVDWTDIHEMVTAVSYTP 618
Query: 647 DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706
DGQ L+G+ KG+CR Y IED KL Q + ++ + KKKS +K+TGFQF+P NP+EVLVTS
Sbjct: 619 DGQGVLVGTQKGNCRTYGIEDYKLTQTSTIELRNKKKSQLKKVTGFQFAPCNPAEVLVTS 678
Query: 707 ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAST 766
ADSRIRI+DG +IVHKF+GFRN +SQ++A+F+ +G++IISASEDSQVYVWK EEHRN++T
Sbjct: 679 ADSRIRIVDGTEIVHKFKGFRNANSQMAASFSPNGRFIISASEDSQVYVWKHEEHRNSNT 738
Query: 767 GK-RAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPV-QTKKHAKRI---------SS 815
GK R ++TT++HEHF CKDVSVAIPWP M+KG+PP PV Q+KK++KR+ ++
Sbjct: 739 GKSRTVLTTQSHEHFPCKDVSVAIPWPFMIKGDPPEVPVPQSKKNSKRMLPPLPKKGNNN 798
Query: 816 NPTSATSSPTKEGSPAGHSR-------------RLLPPLPKKTNKVERVPSPPEEELSLI 862
N + +S + E PA SR R+LPPLPKKTN + S EE+ I
Sbjct: 799 NHATEGASSSPEHDPASLSRSESGIGDSFENSKRMLPPLPKKTNN-QVTESEVEEDHGAI 857
Query: 863 SH-DPGISESFTSNSSSIRSGDSPSISTASETNSNSYSPRQDDPASISSSTDRNSSSFTN 921
S + G +SF+S+S+SIR GD+ S+ SN+ +P +S S+ D +S+
Sbjct: 858 SRTNSGFGDSFSSDSASIRYGDALSM-------SNAATPSGSSWSSNYSAYDGSSA---- 906
Query: 922 WSSWFDVGSHSSHTVQATAWGLVIVTATLGGEIKTYQNFGIPRRLGR 968
V +AWGLVIVTA GGEI+ YQNFG+PRR+GR
Sbjct: 907 --------------VHPSAWGLVIVTAGFGGEIRCYQNFGLPRRMGR 939
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566476|ref|XP_003551457.1| PREDICTED: uncharacterized protein LOC100782200 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/972 (54%), Positives = 673/972 (69%), Gaps = 107/972 (11%)
Query: 7 MERKRTLTMTWDGLADVDDVDDRFFETFDRISTAVPIDLASSDDDDEDFEDSRMSFVSAV 66
MER++T+TM WD DD DD FFET++R+STAVP DLA DDDD +FEDSR+SF S +
Sbjct: 1 MERRKTMTMNWD-GLGDDDDDDHFFETYNRLSTAVPQDLA--DDDDGNFEDSRLSFASTI 57
Query: 67 SSATHLHKHTTKKEFQNFARSAPGSMSPDYDVWMLAPGSITERRKRLFQDMGLSRDRELL 126
SS T K +F+ + G P+Y++WM APGSI+ERR+RL MGL ++ELL
Sbjct: 58 SSTL-----TIKPRTSHFSANFTGK--PNYEIWMAAPGSISERRRRLLCSMGLDENKELL 110
Query: 127 SFKVDDNNVNNNNNTNSHHEAPASVSKNKNNNNNCNIKESEETKQHNSNLNPITQSHSES 186
S A A K +NNN+ N ++ K +++
Sbjct: 111 -------------QATSKAIARAMTKKFENNNDINNNNDNNNNKYAANSI---------- 147
Query: 187 PVKRENSPTQENSPETTVVLVRSRSDGDIESLCIDKKRKEEMIGLISKQRLTRT-SSMML 245
V+ E Q+ S VLVRSRS+GDI+S ++K RKEE+IG +SKQRLTRT + +
Sbjct: 148 AVRVEK---QKPSSSPVFVLVRSRSEGDIDSFSMEKSRKEEIIGKVSKQRLTRTVTEVAQ 204
Query: 246 LQHAKVCPYQESVRVVSKDSS-GNSVRSVRRSGN---FASILSSSRLGAFFLIKNLDTGK 301
+HA+V E+ RVV KD++ G+S+ V N ++ + + AFFLIKNLDTGK
Sbjct: 205 RRHARV----ENNRVVVKDAAAGDSLVHVDARVNRQVITPVMGVAGVSAFFLIKNLDTGK 260
Query: 302 EFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFS 361
EFIVNEY E+G WN+LSDLQTGKQLTMEEFEK+VGHS VVKE+MRR NV R K S
Sbjct: 261 EFIVNEYGEDGTWNRLSDLQTGKQLTMEEFEKTVGHSAVVKEVMRRANVAR---GEKKLS 317
Query: 362 ANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNV 421
+NSY+S+SLR+SKRRGA+LL+NIKGVA + ++E + P P + E K +
Sbjct: 318 SNSYISRSLRLSKRRGASLLRNIKGVASGFVGEREREAVVP-PQAAEPAEPKGK------ 370
Query: 422 SNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQ 481
N WV+VRQSGKS K+LSALHLCQE +AHEG +WTIKFSLD R+LASAGED+VIHVWEVQ
Sbjct: 371 -NKWVRVRQSGKSQKELSALHLCQEFEAHEGCVWTIKFSLDGRYLASAGEDKVIHVWEVQ 429
Query: 482 ECEVMSM--SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETV 539
E EVMS+ EGNLTPIHPSL +S K +GS ++ G + P+YVHVPETV
Sbjct: 430 EWEVMSLRPEEGNLTPIHPSLLSSMTKGK--NGS--------RRGGAGAIPEYVHVPETV 479
Query: 540 FSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTC 599
F+LSEKP+CSF GHLD+VLDLSWSRS LLLSSSMDKTVRLWD+ETKSCLK FAHNDYVTC
Sbjct: 480 FTLSEKPYCSFTGHLDEVLDLSWSRSQLLLSSSMDKTVRLWDLETKSCLKFFAHNDYVTC 539
Query: 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGS 659
+QFNPMD+DYFI+GSLDAKVR+W+I RLVVDW D+HEMVTA YTPDGQ L+G+ KG+
Sbjct: 540 VQFNPMDEDYFITGSLDAKVRMWNIPARLVVDWIDIHEMVTAVSYTPDGQGVLVGTQKGN 599
Query: 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI 719
CR YSIED KL Q + ++ + KKKS +K+TGFQF+P+NPSEVLVTSADSRIRI+DG +
Sbjct: 600 CRTYSIEDYKLTQSDTIELRNKKKSQLKKVTGFQFAPNNPSEVLVTSADSRIRIVDGSQV 659
Query: 720 VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGK-RAIITTRNHE 778
V KF+GFRN SSQ++A+F G+YIISASEDSQVYVWK EE RN S+GK R +I ++HE
Sbjct: 660 VQKFKGFRNASSQMAASFTTSGRYIISASEDSQVYVWKHEETRNPSSGKARNLIVNQSHE 719
Query: 779 HFQCKDVSVAIPWPGMVKGEPPPTPVQT-KKHAKRISSNPTSATSSPTKEGSPAGHSRRL 837
HF CKDVSVAIPWP ++G+PPP P+Q KK++KR ++E S A +S+R+
Sbjct: 720 HFPCKDVSVAIPWPCTIRGDPPPVPMQNPKKNSKR------------SQEDS-AANSKRM 766
Query: 838 LPPLPKKTNK--VERVPSPPEEELSLISH-DPGISESFTSNSSSIRSGDSPSISTASETN 894
LPPLPKK+N E P PE + + ISH + GI +SF N
Sbjct: 767 LPPLPKKSNNHTTESAPGSPEHDPAAISHTESGIGDSF--------------------GN 806
Query: 895 SNSYSPRQDDPASISSSTDRNSSSFTNWSSWFDVGSHSSHTVQATAWGLVIVTATLGGEI 954
S+S++ DPASIS++ +++S ++ S +D G + + ++ +AWGLVIVTA GGEI
Sbjct: 807 SDSFASSYGDPASISAAATPSNASSSSNYSSYD-GCNGASSIHPSAWGLVIVTAGFGGEI 865
Query: 955 KTYQNFGIPRRL 966
+ YQNFG+PRR+
Sbjct: 866 RCYQNFGLPRRM 877
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241815|ref|NP_195863.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|7413632|emb|CAB85980.1| putative protein [Arabidopsis thaliana] gi|332003088|gb|AED90471.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/981 (54%), Positives = 666/981 (67%), Gaps = 108/981 (11%)
Query: 6 KMERKRTLTMTWDGLADVDDVDDRFFETFDRISTAVPIDLASSDDDDE-DFEDSRMSFVS 64
K++RK+T+TM W GL + +D DD FF++ +RIST VP DLASS D++E +F+D R+SF S
Sbjct: 10 KLDRKKTMTMNWAGLGEFEDDDDHFFDSSNRISTVVPSDLASSSDEEEGEFDDCRISFSS 69
Query: 65 AVSSATHLHKHTTKKEFQNFARSAPG-SMSPDYDVWMLAPGSITERRKRLFQDMGL-SRD 122
VSS+ +R+AP MSPDYD+WM APGSITERR+RL MGL S+
Sbjct: 70 NVSSS---------------SRAAPAPDMSPDYDIWMSAPGSITERRRRLLNGMGLESKK 114
Query: 123 RELLSFKVDDNNVNNNNNTNSHHEAPASVSKNKNNNNNCNIKESEETKQHNSNLN-PITQ 181
L + + VS+ C+ E K S+ N P+ Q
Sbjct: 115 TRLGAISIQ------------------RVSEPVAATGECSGSRVAEVKVEESDHNSPVNQ 156
Query: 182 SHSESPVKRENSPTQENSPETTVVLVRSRSDGDIESLCIDKKRKEEMIGLISKQRLTRTS 241
V+R SP +V+LVRSRSD DIE+ +K+RKEEM+G SK RLTRT+
Sbjct: 157 R-----VRR--------SPSMSVLLVRSRSDSDIEASSAEKQRKEEMLGKTSKSRLTRTA 203
Query: 242 SMMLLQHAKVCPYQESVRVVSKDS-SGNSVRSVRRSGN-FASILSSSRLGAFFLIKNLDT 299
S + A++CPY + D+ +G+ +RSG +S++S++R AFFLIKNLDT
Sbjct: 204 SAIGAPCARICPYFTQTQASPPDAPNGHHQSQGQRSGPLLSSVVSNTRFSAFFLIKNLDT 263
Query: 300 GKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGK 359
GKEFIV EY ENGMWN+LSDLQTGKQLTMEEFEKSVG+S VVK+LMRREN N D K
Sbjct: 264 GKEFIVKEYGENGMWNRLSDLQTGKQLTMEEFEKSVGYSSVVKDLMRRENANSTMDFR-K 322
Query: 360 FSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNK 419
F NSY+SKSLR+SK+RGAALLKNIK VAHSMS E + G + +K N+
Sbjct: 323 F--NSYVSKSLRVSKKRGAALLKNIKDVAHSMSSSKVSEKEKDSTGSGTSSPKVAEKNNE 380
Query: 420 NVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479
+N WVKVR SGKS+KDLSALH+CQEIQAH+G IWT+KFS D+ LASAGED IHVWE
Sbjct: 381 Q-ANQWVKVRHSGKSHKDLSALHMCQEIQAHQGGIWTMKFSPDSHLLASAGEDCAIHVWE 439
Query: 480 VQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS-------PDY 532
VQECE+MSM+EG+LTPIHPS+ S+DK+S +G + +KKKKGK S PDY
Sbjct: 440 VQECEIMSMNEGSLTPIHPSMSGSTDKSS--EGDAAEVSQDKKKKGKTSMSKKGNQIPDY 497
Query: 533 VHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA 592
VH PETVFSLS+KP CSF GHLDDVLDLSWSRS LLLSSSMDKTVRLWD+ET+SCLKLFA
Sbjct: 498 VHAPETVFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLFA 557
Query: 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNAL 652
HNDYVTC+QFNP+D+DYFISGSLDAK+RIW+IS+R VV+W DL EMVTA CYTPDGQ A
Sbjct: 558 HNDYVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKEMVTAVCYTPDGQAAF 617
Query: 653 IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIR 712
+GS G CRLYS ED KL Q NQ+D Q KKK+ +KIT FQFSP NPSEVLVTSADSRIR
Sbjct: 618 VGSINGHCRLYSAEDCKLEQTNQIDLQNKKKAQAKKITAFQFSPINPSEVLVTSADSRIR 677
Query: 713 ILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAII 772
+LDG ++V KFRGF+N +SQ++A++ D K+I+ ASEDSQVYVWK EE R TG++ +
Sbjct: 678 VLDGTELVQKFRGFKNMNSQMTASYTVDAKHIVCASEDSQVYVWKHEEPRLGITGRKTVT 737
Query: 773 TTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG 832
++E F CKDVSVA+PW G+VKGEPP T Q+K++ K+ S+ T+ T T G +G
Sbjct: 738 MCTSYETFPCKDVSVAVPWNGVVKGEPPSTQHQSKRNPKKPST--TTTTPENTTTGKKSG 795
Query: 833 HSRRLLPPLPKKTNKVERVPSPPEEE----LSLISHDPGISESFTSNSSSIRSGDSPSIS 888
LPPLPKK N + + + + ISH+ ES + SI+ GDSPSIS
Sbjct: 796 -----LPPLPKKNNDGTADGATEQHQEDDPATHISHN----ESENNTGESIKHGDSPSIS 846
Query: 889 TASETNSNSYSPRQDDPASISSSTDRNSSSFTNWSSWFD-VGSHSSHTVQATAWGLVIVT 947
+S +S SWFD GSH +H+VQ TAWG+VIVT
Sbjct: 847 ISSRISS---------------------------WSWFDSSGSHGTHSVQPTAWGMVIVT 879
Query: 948 ATLGGEIKTYQNFGIPRRLGR 968
AT+ G+I+TYQNFG+PRR+GR
Sbjct: 880 ATIKGQIRTYQNFGLPRRVGR 900
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524545|ref|XP_003530889.1| PREDICTED: uncharacterized protein LOC100793299 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 899 bits (2324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/988 (53%), Positives = 661/988 (66%), Gaps = 121/988 (12%)
Query: 7 MERKRTLTMTWDGLADVDDVDDRFFETFDRISTAVPIDLASSDDDDEDFEDSRMSFVSAV 66
MER++T+TM WD DD DD FFET++ +S AVP DLA DDD DFEDSR+SF S +
Sbjct: 1 MERRKTMTMNWD-GLGDDDDDDHFFETYNLLSAAVPQDLA---DDDNDFEDSRLSFASTI 56
Query: 67 SSATHLHKHTTKKEFQNFARSAPGSMSPDYDVWMLAPGSITERRKRLFQDMGLSRDRELL 126
SS + T+ +F+ + G P+Y++WM APGSI+ERR+RL MGL ++ELL
Sbjct: 57 SSTLSIKPRTS-----HFSANFTGK--PNYEIWMAAPGSISERRRRLLGSMGLDENKELL 109
Query: 127 SFKVDDNNVNNNNNTNSHHEAPASVSKNKNNNNNCNIKESEETKQHNSNLNPITQSHSES 186
S A A K +NNN N + +NS+ + +
Sbjct: 110 -------------QATSAAIARAITKKFENNNGIINNDNNNNNNNNNSSYAINSTAVDVG 156
Query: 187 PVKRENSPTQENSPETTVVLVRSRSDGDIESLCIDKKRKEEMIGLISKQRLTRTSS-MML 245
K NSP VLVRSRS+GDI S ++K RKEE+IG +SKQRLTRT++ +
Sbjct: 157 KQKPSNSPV--------YVLVRSRSEGDIGSFSMEKSRKEEIIGKVSKQRLTRTATEVAQ 208
Query: 246 LQHAKVCPYQESVRVVSKD--SSGNS-VRSVRRSGNFASILSSSRLGAFFLIKNLDTGKE 302
+HA E+ R+V KD ++G+S V V R A+ + LGAFFLIKNLDTGKE
Sbjct: 209 RRHAGA----ENNRMVVKDVPAAGDSPVHQVNRQVVTAA-MGMGDLGAFFLIKNLDTGKE 263
Query: 303 FIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSA 362
FIVNEY E+G WN+LSDLQTGKQLTMEEFEK+VGHS VVKE+MRR NV+R +D K S+
Sbjct: 264 FIVNEYGEDGTWNRLSDLQTGKQLTMEEFEKTVGHSAVVKEVMRRANVSRHSDK--KLSS 321
Query: 363 NSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVS 422
NSY+S+SLR+SKRRGA+LL+NIKGVA + + P +G
Sbjct: 322 NSYISRSLRLSKRRGASLLRNIKGVASGFVGEREASVAAPQAAVG--------------K 367
Query: 423 NHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQE 482
N WV+VRQSGKS K+LSALHLCQE QAHEG +WTIKFSLD R+LASAGED+VIHVWEVQE
Sbjct: 368 NEWVRVRQSGKSQKELSALHLCQEFQAHEGCVWTIKFSLDGRYLASAGEDKVIHVWEVQE 427
Query: 483 CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSL 542
CEVMS+ P+ + KK G + P+YVHVPETVF+L
Sbjct: 428 CEVMSL-------------------------KPDLKKKGKKGGASAIPEYVHVPETVFTL 462
Query: 543 SEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQF 602
SEKP+CSF GHLD+VLDLSWSRS LLLSSSMDKTVRLWD+ETKSCLK FAHNDYVTC+QF
Sbjct: 463 SEKPYCSFTGHLDEVLDLSWSRSQLLLSSSMDKTVRLWDLETKSCLKFFAHNDYVTCVQF 522
Query: 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL 662
NPMD+DYF++GSLDAKVR+W+I RLVVDW D+HEMVTA YTPDGQ L+G+ KG+CR
Sbjct: 523 NPMDEDYFLTGSLDAKVRMWNIPARLVVDWIDIHEMVTAVSYTPDGQGVLVGTQKGNCRT 582
Query: 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK 722
YS+ED KL Q V+ + KKKS +K+TGFQF+P+NPSEVLVTSADSRIRI+DG +V K
Sbjct: 583 YSLEDYKLTQSGTVELRNKKKSQLKKVTGFQFAPNNPSEVLVTSADSRIRIVDGSQVVQK 642
Query: 723 FRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGK-RAIITTRNHEHFQ 781
F+GFRN SSQ++A+F G+YIISASEDSQVYVWK EE R S+GK R++I ++HEHF
Sbjct: 643 FKGFRNASSQMAASFTTSGRYIISASEDSQVYVWKNEEARTPSSGKARSLIVNQSHEHFP 702
Query: 782 CKDVSVAIPWPGMVKGEPPPTPVQT-KKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPP 840
CKDVSVAIPWP ++G+PP P+Q KK++KR ++E +PA +S+R+LPP
Sbjct: 703 CKDVSVAIPWPCTIRGDPPSVPMQNPKKNSKR------------SQEDTPA-NSKRMLPP 749
Query: 841 LPKKTN--KVERVPSPPEEELSLISH-DPGISESF------------TSNSSSIRSGDSP 885
LPKK+N E P PE + + IS + GI +SF SN+ + SGDSP
Sbjct: 750 LPKKSNNHATESAPGSPEHDPAAISRTESGIGDSFGNSKRMLPPLPKKSNNHATESGDSP 809
Query: 886 ------SISTASETNSNSYSPRQDDPASISSS-TDRNSSSFTNWSSWFDVGSHSSHTVQA 938
+IS +S++ DPASIS+S T N+S +N+SS+ G + + ++
Sbjct: 810 IDEELEAISRTDTGLGDSFASSYGDPASISASGTPSNASWSSNYSSY--DGCNGASSIHP 867
Query: 939 TAWGLVIVTATLGGEIKTYQNFGIPRRL 966
+AWGLVIVTA GGEI+ YQNFG+PRR+
Sbjct: 868 SAWGLVIVTAGFGGEIRCYQNFGLPRRM 895
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 969 | ||||||
| TAIR|locus:2040731 | 903 | AT2G37670 "AT2G37670" [Arabido | 0.687 | 0.737 | 0.574 | 1.1e-242 | |
| TAIR|locus:2181733 | 905 | AT5G02430 "AT5G02430" [Arabido | 0.664 | 0.711 | 0.572 | 9.5e-231 | |
| TAIR|locus:2090146 | 883 | AT3G15470 "AT3G15470" [Arabido | 0.517 | 0.567 | 0.505 | 7e-151 | |
| TAIR|locus:2153443 | 825 | AT5G54200 "AT5G54200" [Arabido | 0.511 | 0.601 | 0.517 | 7.1e-143 | |
| TAIR|locus:2169769 | 698 | AT5G24320 "AT5G24320" [Arabido | 0.374 | 0.520 | 0.430 | 1.1e-86 | |
| TAIR|locus:2168606 | 654 | AT5G53500 "AT5G53500" [Arabido | 0.371 | 0.550 | 0.419 | 4.6e-86 | |
| TAIR|locus:2165700 | 709 | AT5G42010 "AT5G42010" [Arabido | 0.378 | 0.517 | 0.384 | 3.8e-84 | |
| TAIR|locus:2019494 | 647 | AT1G64610 "AT1G64610" [Arabido | 0.375 | 0.562 | 0.377 | 8.1e-79 | |
| TAIR|locus:2028539 | 593 | AT1G48870 [Arabidopsis thalian | 0.254 | 0.416 | 0.346 | 1.1e-70 | |
| UNIPROTKB|Q9XSC3 | 912 | WDR44 "WD repeat-containing pr | 0.218 | 0.232 | 0.408 | 6e-46 |
| TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1981 (702.4 bits), Expect = 1.1e-242, Sum P(3) = 1.1e-242
Identities = 401/698 (57%), Positives = 485/698 (69%)
Query: 178 PITQSHSESPVKRE-NSPTQENSPE-TTVVLVRSRSDGDIESLCIDKKRKEEMIGLISKQ 235
P+ + E +K++ N E + V+L RSRS+ DIE I+K+RKEE++G ISKQ
Sbjct: 131 PVVSNGEEKKMKKKMNHEVDEQDHDHVPVMLARSRSESDIERFLIEKRRKEEILGKISKQ 190
Query: 236 RLTRTSSMMLLQHAKVCPYQESVRVVSKDXXXXXXXXXXXXXXFASILSSSRLGAFFLIK 295
RLTRT S + ++C YQ +R S++S++R+GAFFLIK
Sbjct: 191 RLTRTYSTICPTRTRICQYQTPIRQTPA-VCGNGKALRGGGEALTSVMSNARVGAFFLIK 249
Query: 296 NLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRIND 355
NLDTGKEFIVNEY E+GMWN+LSDLQTGKQLT+EEFEK VG+SPVVKELMRRENVNRIN
Sbjct: 250 NLDTGKEFIVNEYDEDGMWNRLSDLQTGKQLTLEEFEKCVGYSPVVKELMRRENVNRINY 309
Query: 356 SA----GKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVK-GDKECINPNPLLGDQR 410
KF NSYLSKS+R+SKRRGAALLKNIKGVAHSMS++ DK+ ++ ++
Sbjct: 310 EPLMDLRKF--NSYLSKSVRLSKRRGAALLKNIKGVAHSMSLRVADKD-VSDGSTDSPKK 366
Query: 411 XXXXXXXXXXVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG 470
+N WVKVR +GKSYK+LSALH+CQEIQAHEG++WTIKFS DA +LAS G
Sbjct: 367 GKDHKHGK---ANEWVKVRPTGKSYKELSALHMCQEIQAHEGAVWTIKFSQDAHYLASGG 423
Query: 471 EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNXXXXXXXXXXXXXXXXXXXXXXXXXXXX 530
DRVIHVWEVQECE+MSM+EG+LTPIHPSLC+
Sbjct: 424 ADRVIHVWEVQECELMSMNEGSLTPIHPSLCDSSGNEITVVEKKKKGKGSSGRRHNHIP- 482
Query: 531 DYVHVPETVFSLSEKPFCSFIGHLDDVXXXXXXXXXXXXXXXMDKTVRLWDMETKSCLKL 590
DYVHVPETVFS S+KP CS GHLD + MDKTVRLWD+ETK+CLKL
Sbjct: 483 DYVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQLLLSSSMDKTVRLWDIETKTCLKL 542
Query: 591 FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQN 650
FAHNDYVTCIQF+P+D++YF+SGSLDAK+RIWSI DR VV+W+DLHEMVTAACYTPDGQ
Sbjct: 543 FAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDLHEMVTAACYTPDGQG 602
Query: 651 ALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST-RKITGFQFSPSNPSEVLVTSADS 709
ALIGSHKG CR Y ED KL Q NQ+D Q+ KKS RKIT FQFSP NPSEVLVTSADS
Sbjct: 603 ALIGSHKGICRAYDTEDCKLSQTNQIDVQSNKKSQAKRKITSFQFSPVNPSEVLVTSADS 662
Query: 710 RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKR 769
RIRILDG +++HKF+GFRNT SQ+SA+++ DGKYII ASEDSQVY+WK + HR ST
Sbjct: 663 RIRILDGSEVIHKFKGFRNTCSQLSASYSQDGKYIICASEDSQVYLWKNDFHRTRST--- 719
Query: 770 AIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRIXXXXXXXXXXXX---K 826
+TT++HEHF CKDVS A+PW G V+GEPPP + +K+H+KRI +
Sbjct: 720 --LTTQSHEHFHCKDVSAAVPWHGHVRGEPPPVQIHSKRHSKRISTSSQPSSTISSPTKE 777
Query: 827 EGSPAG------HSRRLLPPLPKKTNKVERVPSPPEEE 858
E S G + + LPP+PKK ++ PEEE
Sbjct: 778 ETSATGPTTSNRNKKSGLPPMPKKAATKSQIQ--PEEE 813
|
|
| TAIR|locus:2181733 AT5G02430 "AT5G02430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1885 (668.6 bits), Expect = 9.5e-231, Sum P(3) = 9.5e-231
Identities = 381/665 (57%), Positives = 452/665 (67%)
Query: 192 NSPTQEN---SPETTVVLVRSRSDGDIESLCIDKKRKEEMIGLISKQRLTRTSSMMLLQH 248
NSP + SP +V+LVRSRSD DIE+ +K+RKEEM+G SK RLTRT+S +
Sbjct: 151 NSPVNQRVRRSPSMSVLLVRSRSDSDIEASSAEKQRKEEMLGKTSKSRLTRTASAIGAPC 210
Query: 249 AKVCPYQESVRVVSKDXXXXXXXXXXXXXX--FASILSSSRLGAFFLIKNLDTGKEFIVN 306
A++CPY + D +S++S++R AFFLIKNLDTGKEFIV
Sbjct: 211 ARICPYFTQTQASPPDAPNGHHQSQGQRSGPLLSSVVSNTRFSAFFLIKNLDTGKEFIVK 270
Query: 307 EYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYL 366
EY ENGMWN+LSDLQTGKQLTMEEFEKSVG+S VVK+LMRREN N D KF NSY+
Sbjct: 271 EYGENGMWNRLSDLQTGKQLTMEEFEKSVGYSSVVKDLMRRENANSTMDFR-KF--NSYV 327
Query: 367 SKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQRXXXXXXXXXXVSNHWV 426
SKSLR+SK+RGAALLKNIK VAHSMS E + G +N WV
Sbjct: 328 SKSLRVSKKRGAALLKNIKDVAHSMSSSKVSEKEKDSTGSGTSSPKVAEKNNEQ-ANQWV 386
Query: 427 KVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVM 486
KVR SGKS+KDLSALH+CQEIQAH+G IWT+KFS D+ LASAGED IHVWEVQECE+M
Sbjct: 387 KVRHSGKSHKDLSALHMCQEIQAHQGGIWTMKFSPDSHLLASAGEDCAIHVWEVQECEIM 446
Query: 487 SMSEGNLTPIHPSLCNXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----DYVHVPETVFS 541
SM+EG+LTPIHPS+ DYVH PETVFS
Sbjct: 447 SMNEGSLTPIHPSMSGSTDKSSEGDAAEVSQDKKKKGKTSMSKKGNQIPDYVHAPETVFS 506
Query: 542 LSEKPFCSFIGHLDDVXXXXXXXXXXXXXXXMDKTVRLWDMETKSCLKLFAHNDYVTCIQ 601
LS+KP CSF GHLDDV MDKTVRLWD+ET+SCLKLFAHNDYVTC+Q
Sbjct: 507 LSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLFAHNDYVTCVQ 566
Query: 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCR 661
FNP+D+DYFISGSLDAK+RIW+IS+R VV+W DL EMVTA CYTPDGQ A +GS G CR
Sbjct: 567 FNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKEMVTAVCYTPDGQAAFVGSINGHCR 626
Query: 662 LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721
LYS ED KL Q NQ+D Q KKK+ +KIT FQFSP NPSEVLVTSADSRIR+LDG ++V
Sbjct: 627 LYSAEDCKLEQTNQIDLQNKKKAQAKKITAFQFSPINPSEVLVTSADSRIRVLDGTELVQ 686
Query: 722 KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQ 781
KFRGF+N +SQ++A++ D K+I+ ASEDSQVYVWK EE R TG++ + ++E F
Sbjct: 687 KFRGFKNMNSQMTASYTVDAKHIVCASEDSQVYVWKHEEPRLGITGRKTVTMCTSYETFP 746
Query: 782 CKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRIXXXXXXXXXXXXKEGSPAGHSRRLLPPL 841
CKDVSVA+PW G+VKGEPP T Q+K++ K+ G +G LPPL
Sbjct: 747 CKDVSVAVPWNGVVKGEPPSTQHQSKRNPKKPSTTTTTPENTTT--GKKSG-----LPPL 799
Query: 842 PKKTN 846
PKK N
Sbjct: 800 PKKNN 804
|
|
| TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1296 (461.3 bits), Expect = 7.0e-151, Sum P(3) = 7.0e-151
Identities = 262/518 (50%), Positives = 339/518 (65%)
Query: 294 IKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRI 353
IKNLD GKEF+VNE E+G W K+ ++ TG Q+TMEEFE VGHSP+V+ELMRR+NV
Sbjct: 248 IKNLDNGKEFVVNEIQEDGTWKKVKEVGTGTQMTMEEFEMCVGHSPIVQELMRRQNVEDS 307
Query: 354 NDSAGKFSANSYLSKSLRMSK-RRGAALLKNIKGVAHSMS----VKGDKECINPNPLLGD 408
+ + K + +S S SK ++ + K+IK VA SM+ + + + + G
Sbjct: 308 DKNTSKENEDSGNSNKDNASKSKKKGSWFKSIKSVASSMTGHSKERRSSDDRDTSSERGG 367
Query: 409 QRXXXXXXXXXXVSNHW---VKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARF 465
+R S H V+VRQ GKS K+L+AL+ QEIQAH GSIW+IKFSLD ++
Sbjct: 368 RRSSSATDDSQESSFHGPERVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDGKY 427
Query: 466 LASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNXXXXXXXXXXXXX-XXXXXXXXX 524
LASAGED +IH+W+V E E +G L P L
Sbjct: 428 LASAGEDCIIHIWQVVEAE----KKGELLLDRPELLLLATNGSPEPTTMSPRRRGRTSIS 483
Query: 525 XXXXXXDYVHVPETVFSLSEKPFCSFIGHLDDVXXXXXXXXXXXXXXXMDKTVRLWDMET 584
+ + VP+++F LSEKPFCSF GH+DDV MDKTVRLW++ +
Sbjct: 484 RKSLSLENIFVPDSLFGLSEKPFCSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSS 543
Query: 585 KSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACY 644
++CLK+F+H+DYVTCIQFNP+DD YFISGSLDAKVR+WSI DR VVDW DLHEMVT+ACY
Sbjct: 544 QTCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACY 603
Query: 645 TPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS-TRKITGFQFSPSNPSEVL 703
TPDGQ L+GS+KGSCR+YS D+KL Q +Q++ Q KKK + +KITGFQF P + SEVL
Sbjct: 604 TPDGQGVLVGSYKGSCRMYSASDNKLQQKSQINLQNKKKKAHQKKITGFQFVPGSSSEVL 663
Query: 704 VTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE--- 760
VTS+DSRIR++DG D+V+K +GFRNTSSQISA+ ADGKY++SASEDS VY+WK E
Sbjct: 664 VTSSDSRIRVVDGTDLVNKLKGFRNTSSQISASITADGKYVVSASEDSHVYIWKYESPAS 723
Query: 761 HRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGE 798
+ S + + T ++EHF +DVS AI WPGM E
Sbjct: 724 RPSRSNNNKNVTVTNSYEHFHSQDVSAAISWPGMASTE 761
|
|
| TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1267 (451.1 bits), Expect = 7.1e-143, Sum P(3) = 7.1e-143
Identities = 266/514 (51%), Positives = 342/514 (66%)
Query: 294 IKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRI 353
I+NLDTG+EF+VNE E+GM +L ++ T +QLT+EEFE VG SP+V ELMRR+NV +
Sbjct: 202 IRNLDTGREFVVNEVREDGMLERLKEVGTDRQLTLEEFEICVGTSPIVLELMRRQNVEDV 261
Query: 354 NDSAGKFSANSYLSKSLRMSK-RRGAALLKNIKGVAHSMSVKGDKECINP--NPL-LGDQ 409
+ N +S S R++K RR + LK+IK VA S++ ++ + +P G Q
Sbjct: 262 CKDSVDLDTN--VSGS-RVTKHRRRGSWLKSIKNVASSVTGYKERRSTDDRDSPSERGGQ 318
Query: 410 RXXXXXXXXXXVSNH---WVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFL 466
R +S H VKVRQ GKS K+L+AL QEIQAH+GSIW+IKFSLD R+L
Sbjct: 319 RFSSATDDSRDMSFHDPERVKVRQYGKSCKELTALFKSQEIQAHKGSIWSIKFSLDGRYL 378
Query: 467 ASAGEDRVIHVWEVQECE----VMSMSEGNLTPIHPSLCNXXXXXXXXXXXXXXXXXXXX 522
ASAGED VI +W+V E E ++SM + I+ L
Sbjct: 379 ASAGEDCVIQIWKVVESERKGELLSMDKQEDGSINLFLL--ANGSPEPVSMSPKRRGRTS 436
Query: 523 XXXXXXXXDYVHVPETVFSLSEKPFCSFIGHLDDVXXXXXXXXXXXXXXXMDKTVRLWDM 582
D V VPE VF LSEKP CSF+GHLDDV MDKTVRLWD+
Sbjct: 437 FSRKSVSLDNVLVPEAVFGLSEKPVCSFVGHLDDVLDLSWSKSQHLLSSSMDKTVRLWDL 496
Query: 583 ETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAA 642
+K+CLK+F+H+DYVTCIQFNP+DD+YFISGSLDAKVRIWSI D VVDW DLHEMVTAA
Sbjct: 497 SSKTCLKVFSHSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAA 556
Query: 643 CYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT-KKKSSTRKITGFQFSPSNPSE 701
CYTPDGQ AL+GS+KG+C LY+ D+KL Q +++ + KKK+ +KITGFQF + SE
Sbjct: 557 CYTPDGQGALVGSYKGTCCLYNTHDNKLQQRREINLKNRKKKTHHKKITGFQFVAGSSSE 616
Query: 702 VLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761
VLVTSADSR R++DG+D+VHKF+GFRNT+SQISA+ ++GK+++SASEDS VYVW +
Sbjct: 617 VLVTSADSRTRVVDGVDLVHKFKGFRNTNSQISASLTSNGKFLVSASEDSNVYVWNYDSD 676
Query: 762 RNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMV 795
A KR +T ++E+F C+DVSVA PWPG +
Sbjct: 677 SRAGRSKRVTVTN-SYENFYCRDVSVAAPWPGKI 709
|
|
| TAIR|locus:2169769 AT5G24320 "AT5G24320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.1e-86, Sum P(3) = 1.1e-86
Identities = 165/383 (43%), Positives = 217/383 (56%)
Query: 426 VKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEV 485
VKV++ K K+LSAL QEIQAHEG+I +KFS D R+LASAGED V+ VW V E E
Sbjct: 226 VKVKEYKKEAKELSALFKGQEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDE- 284
Query: 486 MSMSEGNLTPIHPSLC----NXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYVHVPETVFS 541
E ++ I PS + V +P +F
Sbjct: 285 -RCEEHDVPKIDPSCIYFEVSKLSELRPVAVEKDGITGSLMSPRKTTESACVIIPPKIFR 343
Query: 542 LSEKPFCSFIGHLDDVXXXXXXXXXXXXXXXMDKTVRLWDMETKSCLKLFAHNDYVTCIQ 601
+ +KP F+GH D+ +D +VRLW + + CL +F+HN+YVT +Q
Sbjct: 344 VLDKPLHEFLGHSGDILDISWSKNNRLLSASVDNSVRLWQIGCEDCLGIFSHNNYVTSVQ 403
Query: 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCR 661
FNP+DDD+FISGS+D KVRIWS S VVDW D +VTA CY PDGQ +IG+ CR
Sbjct: 404 FNPVDDDHFISGSIDGKVRIWSASQCQVVDWADARGIVTAVCYQPDGQAVIIGTLTSDCR 463
Query: 662 LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF----SPSNPSEVLVTSADSRIRILDGL 717
Y++ L + KKKSS ++I GFQF ++PS V+V SADS++RI+ G
Sbjct: 464 FYNVSGHCLQLDGHICLHNKKKSSNKRIIGFQFLLQFDSTDPSRVMVASADSQVRIISGR 523
Query: 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH--RNASTG-----KRA 770
++VHK++G RN +QISA+F ADGK+I+SA +DS VYVW H +S G KR
Sbjct: 524 NVVHKYKGSRNAGNQISASFTADGKHIVSACDDSSVYVWNCVGHDPEQSSPGFFSHTKRL 583
Query: 771 IITTRNHEHFQCKDVSVAIPWPG 793
I R+ E F DVSVAIPW G
Sbjct: 584 KI--RSFEKFSA-DVSVAIPWCG 603
|
|
| TAIR|locus:2168606 AT5G53500 "AT5G53500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 740 (265.6 bits), Expect = 4.6e-86, Sum P(3) = 4.6e-86
Identities = 156/372 (41%), Positives = 213/372 (57%)
Query: 426 VKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEV 485
VKV+ K K+LSAL+ Q+I+AH+G+I +KFS D +FLAS+GED ++ VW+V E +
Sbjct: 196 VKVKHCKKQAKELSALYQSQDIKAHDGAILAMKFSNDGKFLASSGEDGIVRVWKVVEDKK 255
Query: 486 MSMSEGNLTPIHPSLC----NXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYVHVPETVFS 541
+ L I PS N V P VF
Sbjct: 256 SRLRRDCLNEIDPSCMYFEVNDLSQLKPVLVNEEKPKKTTESFRKTSDSACVVFPPKVFR 315
Query: 542 LSEKPFCSFIGHLDDVXXXXXXXXXXXXXXXMDKTVRLWDMETKSCLKLFAHNDYVTCIQ 601
+ EKP F GH +V MDKTVRLW + + CL +FAHN YVT +Q
Sbjct: 316 IMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFAHNSYVTSVQ 375
Query: 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCR 661
FNP++++YF+SGS+D KVRIW+IS VVDW DL ++++A CY PDGQ +IGS GSCR
Sbjct: 376 FNPVNENYFMSGSIDGKVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGIIGSLNGSCR 435
Query: 662 LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721
+++ L +Q+ KKKSS ++ITGFQF P P++VLV SADS++RIL G ++V
Sbjct: 436 FFNMSGEFLELDSQIHLHNKKKSSNKRITGFQFLPQEPTKVLVVSADSKVRILQGNNVVR 495
Query: 722 KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQ 781
K++G T S SA+ +DGK+I+SA EDS VY+W +E + T K R+ E F
Sbjct: 496 KYKGVCKTRSLTSASLTSDGKHIVSACEDSNVYIWSNDEE--SETKK-----IRSFERFS 548
Query: 782 CKDVSVAIPWPG 793
+ SVA W G
Sbjct: 549 A-NASVAATWCG 559
|
|
| TAIR|locus:2165700 AT5G42010 "AT5G42010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 679 (244.1 bits), Expect = 3.8e-84, Sum P(4) = 3.8e-84
Identities = 146/380 (38%), Positives = 218/380 (57%)
Query: 427 KVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE-- 484
+V+ K +K+LS+L + QE AH+GSI +KFS D ++LASAGED V+ VW + E E
Sbjct: 233 RVQSFKKQFKELSSLCVGQEFSAHDGSIVVMKFSHDGKYLASAGEDCVVRVWNIIEDERR 292
Query: 485 --VMSMSEGNLTPIHPSLCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYVHVPETVFSL 542
++E + + ++ + N +P VFS+
Sbjct: 293 DNEFEVAESDSSCVYFGM-NDKSQIEPLKTENEKIEKSRGLLRKKSESTCAVLPSKVFSI 351
Query: 543 SEKPFCSFIGHLDDVXXXXXXXXXXXXXXXMDKTVRLWDM-ETKSCLKLFAHNDYVTCIQ 601
SE P F GH ++ +D+TVRLW + + C+++F+H +VTC+
Sbjct: 352 SETPQHEFRGHTGEILDLSWSEKGFLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCVA 411
Query: 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCR 661
FNP+DD+YFISGS+D KVRIW +S VVD+TD+ ++VTA CY PDG+ A++GS G CR
Sbjct: 412 FNPVDDNYFISGSIDGKVRIWDVSQFRVVDYTDIRQIVTALCYRPDGKGAVVGSMTGECR 471
Query: 662 LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721
Y D++L + KKK ++ITGFQF P + +V+VTSADS+IRI+ G+D +
Sbjct: 472 FYHTTDNQLQLDRDISLHGKKKVPNKRITGFQFFPGDSDKVMVTSADSQIRIICGVDTIC 531
Query: 722 KFR---GFRNT-SSQISAAFNADGKYIISASEDSQVYVWK-REEHRNASTGKRAIITTRN 776
K + R T S A+F +DGK+I+S E+S ++VW + ++ AS+ K T R+
Sbjct: 532 KLKKASSLRTTLMSPTFASFTSDGKHIVSTIEESGIHVWDFSQPNKKASSQKPK--TIRS 589
Query: 777 HEHFQCKDVSVAIPWPGMVK 796
+E F ++VSVAIPW G K
Sbjct: 590 YEGFLSRNVSVAIPWLGQGK 609
|
|
| TAIR|locus:2019494 AT1G64610 "AT1G64610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 670 (240.9 bits), Expect = 8.1e-79, Sum P(3) = 8.1e-79
Identities = 141/374 (37%), Positives = 215/374 (57%)
Query: 424 HWV-KVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQE 482
H V +V+ K +K+LS++ + QE AH+GSI +KFS D +++ASAGED V+ VW + E
Sbjct: 190 HQVARVQTHKKQFKELSSMCIDQEFSAHDGSILAMKFSPDGKYIASAGEDCVVRVWSITE 249
Query: 483 CEVMSMSEGNLTPIHPSL---CNXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYVHVPETV 539
E E + + + N V +P T+
Sbjct: 250 EERTDTYE--VAEVDSGVYFGMNQRSQIEPLKINNEKTEKKSSFLRKSSDSTCVVLPPTI 307
Query: 540 FSLSEKPFCSFIGHLDDVXXXXXXXXXXXXXXXMDKTVRLWDMETKSCLKLFAHNDYVTC 599
FS+SEKP F GH+ ++ +D+TVRLW + CL+ F HN++VTC
Sbjct: 308 FSISEKPLHEFKGHIGEILDLSWSEKGYLLSSSVDETVRLWRVGCDECLRTFTHNNFVTC 367
Query: 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGS 659
+ FNP+DD+YFISGS+D KVRIW ++ VVD+TD+ ++VTA CY PD + A+IGS G+
Sbjct: 368 VAFNPVDDNYFISGSIDGKVRIWDVTRCRVVDYTDIRDIVTAVCYRPDAKGAVIGSMTGN 427
Query: 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS--EVLVTSADSRIRILDGL 717
CR Y I +++L +++ KKK ++++I+G Q+ PS+ +V+VTSADS+IRI+ G
Sbjct: 428 CRFYHIFENQLQMDQEINVHGKKKVASKRISGLQYLPSDSDSDKVMVTSADSQIRIICGE 487
Query: 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNH 777
D++ K + ++ SA+F +DGK+IIS SEDS + VW + + + R++
Sbjct: 488 DVICKLKA--SSLRTTSASFISDGKHIISTSEDSYINVWSYSQLPSKKPYSETPKSIRSY 545
Query: 778 EHFQCKDVSVAIPW 791
E F + SVAIPW
Sbjct: 546 EGFLSHNASVAIPW 559
|
|
| TAIR|locus:2028539 AT1G48870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 1.1e-70, Sum P(5) = 1.1e-70
Identities = 89/257 (34%), Positives = 138/257 (53%)
Query: 536 PETVFSLSEKPFCSFIGHLDDVXXXXXXXXXXXXXXXMDKTVRLWDMETKSCLKLFAHND 595
P+ F + E PF GH DV DKTVRLW CL +F HN+
Sbjct: 254 PQKAFHIEETPFQELYGHTGDVLDLAWSDSNLLLSASKDKTVRLWRTGCDQCLHVFHHNN 313
Query: 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS 655
YVTC++FNP++ + F SGS+D K RIW +S+ VV WTD+ + ++A Y P+G ++G
Sbjct: 314 YVTCVEFNPVNKNNFASGSIDGKARIWGLSEERVVAWTDVRDSISAISYQPNGNGFVVGC 373
Query: 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715
G+CR Y I D+ + Q+ + + + IT +F P + ++LV+S DS++RI D
Sbjct: 374 ITGNCRFYQILDNDVIMDEQILIRGRNR-----ITAVEFCPGSSEKILVSSEDSKVRIFD 428
Query: 716 GLDIVHKFRGFRNTSSQISAAF-NADGKYIISASEDSQVYVWKREEHRNASTGKRAIITT 774
++HKF+ N Q SA+F ++ GK+I+S VY+W + A ++ ++
Sbjct: 429 KTQMIHKFKAPSNFGRQSSASFVSSTGKHILSVRRGVGVYLWNND----AFPSRKGAKSS 484
Query: 775 RNHEHFQCKDVSVAIPW 791
R+ E+F VS W
Sbjct: 485 RSFEYFHSPGVSAVAAW 501
|
|
| UNIPROTKB|Q9XSC3 WDR44 "WD repeat-containing protein 44" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 442 (160.7 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 89/218 (40%), Positives = 129/218 (59%)
Query: 544 EKPFCSFIGHLDDVXXXXXXXXXXXXXXXMDKTVRLWDMETKSCLKLFAHNDYVTCIQFN 603
++PFC + GH D+ MDKTVRLW + + CL F H D+VT I F+
Sbjct: 596 QRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFH 655
Query: 604 PMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKGSC 660
P DD YF+SGSLD K+R+W+I D+ V W ++ +++TAA + +G+ A+IG++ G C
Sbjct: 656 PRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRC 715
Query: 661 RLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLD 718
Y E K H V + RKITG + P +++LVTS DSRIR+ D L
Sbjct: 716 IFYDTEHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLS 774
Query: 719 IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVW 756
+ K++G+ N+SSQI A+F+ D Y++S SED VY+W
Sbjct: 775 LSMKYKGYVNSSSQIKASFSHDFNYLVSGSEDKYVYIW 812
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 969 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-39 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-22 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-05 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 8e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.003 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 2e-39
Identities = 78/326 (23%), Positives = 138/326 (42%), Gaps = 48/326 (14%)
Query: 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCN 502
L + ++ H G + + FS D + LA+ D I VW+++ E++ +G+ P+ +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 503 SSDK---ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSL-SEKPFCSFIGHLDDVL 558
+ + S D + ++ L + + + GH V
Sbjct: 61 ADGTYLASGSSDKTI-----------------------RLWDLETGECVRTLTGHTSYVS 97
Query: 559 DLSWSRS-HLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLD 616
+++S +L SSS DKT+++WD+ET CL H D+V + F+P D + S S D
Sbjct: 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQD 156
Query: 617 AKVRIWSISDRLVVDWTDLHEM-VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675
+++W + V H V + ++PDG+ L S G+ +L+ + K +
Sbjct: 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216
Query: 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA--DSRIRI--LDGLDIVHKFRGFRNTSS 731
+ FSP L+ S D IR+ L + V G +T+S
Sbjct: 217 --------GHENGVNSVAFSPDG---YLLASGSEDGTIRVWDLRTGECVQTLSG--HTNS 263
Query: 732 QISAAFNADGKYIISASEDSQVYVWK 757
S A++ DGK + S S D + +W
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 2e-22
Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 31/235 (13%)
Query: 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496
DL + + H + ++ FS D R L+S+ D+ I VW+V+ + ++ G+ +
Sbjct: 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV 138
Query: 497 HPSLCNSSDK----ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIG 552
+ S+ S D +SS DG + + + + K + G
Sbjct: 139 N-SVAFSPDGTFVASSSQDG-------------------TIKLWDLR---TGKCVATLTG 175
Query: 553 HLDDVLDLSWS-RSHLLLSSSMDKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYF 610
H +V +++S LLSSS D T++LWD+ T CL L H + V + F+P D
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLL 234
Query: 611 ISGSLDAKVRIWSISDRLVVDWTDLHEM-VTAACYTPDGQNALIGSHKGSCRLYS 664
SGS D +R+W + V H VT+ ++PDG+ GS G+ R++
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.6 bits (231), Expect = 7e-20
Identities = 78/329 (23%), Positives = 132/329 (40%), Gaps = 32/329 (9%)
Query: 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEV--QECEVMSMSEGNLTPIHPSLC 501
++ HE SI +I FS D L S D I +W++ E + S+ + + +
Sbjct: 58 SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117
Query: 502 NSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLS 561
+S D S L SS G D + + +L GH + V L+
Sbjct: 118 SSPDGNSILLASS-------SLDGTVKLWDLSTPGKLIRTLE--------GHSESVTSLA 162
Query: 562 WSRS--HLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAK 618
+S L SS+D T++LWD+ T L A H D V+ + F+P SGS D
Sbjct: 163 FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222
Query: 619 VRIWSISDRLVVDWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677
+R+W +S ++ T H + ++PDG GS G+ RL+ + S
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL------ 276
Query: 678 FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISA 735
+ + FSP + + S+D +R+ D ++ + S
Sbjct: 277 -LRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334
Query: 736 AFNADGKYIISA-SEDSQVYVWKREEHRN 763
+F+ DG ++S S+D + +W +
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.3 bits (199), Expect = 6e-16
Identities = 82/334 (24%), Positives = 133/334 (39%), Gaps = 35/334 (10%)
Query: 433 KSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGE-DRVIHVWEVQECEVMSMSEG 491
K + + L + ++ H S+ ++ FS D + LAS D I +W+++ + +S G
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196
Query: 492 NLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFI 551
+ P+ SL S D + S + + S + +
Sbjct: 197 HTDPVS-SLAFSPDGGLLIASGSSDG----------------TIRLWDLSTGKLLRSTLS 239
Query: 552 GHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCL--KLFAHNDYVTCIQFNPMDDDY 609
GH D V+ LL S S D T+RLWD+ + S L L H+ V + F+P D
Sbjct: 240 GHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKL 298
Query: 610 FISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACYTPDGQNALIG-SHKGSCRLYSI 665
SGS D VR+W + ++ L V++ ++PDG + G S G+ RL+ +
Sbjct: 299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358
Query: 666 EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG 725
K K + FSP V S D +R+ D
Sbjct: 359 RTGK---------PLKTLEGHSNVLSVSFSPDGRV-VSSGSTDGTVRLWDLSTGSLLRNL 408
Query: 726 FRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759
+TS S F+ DGK + S S D+ + +W +
Sbjct: 409 DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.5 bits (184), Expect = 4e-14
Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 17/236 (7%)
Query: 537 ETVFSLSEKPFCSFIGHLDDVLDLSWSRS-HLLLSSSMDKTVRLWDMETKSCLK---LFA 592
+++ SL + GH D + +++S LLLS S D T++LWD++ L
Sbjct: 48 DSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL 107
Query: 593 HNDYVTCIQFNPMDDDYFIS--GSLDAKVRIWSISD--RLVVDWTDLHEMVTAACYTPDG 648
H+ V+ + + D + + SLD V++W +S +L+ E VT+ ++PDG
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167
Query: 649 QNALIGSH-KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707
+ GS G+ +L+ + K T ++ FSP + S+
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTL--------AGHTDPVSSLAFSPDGGLLIASGSS 219
Query: 708 DSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763
D IR+ D S + ++F+ DG + S S D + +W +
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.5 bits (145), Expect = 2e-09
Identities = 66/280 (23%), Positives = 107/280 (38%), Gaps = 33/280 (11%)
Query: 437 DLSALHLCQEIQAHEGSIWTIKFSLDARF-LASAGEDRVIHVWEVQECEVMS-----MSE 490
DL + H + ++ FS D +AS D I +W++ +++ S+
Sbjct: 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243
Query: 491 GNLTPIHPS----LCNSSDKASSLDGSSPNPPPEKKKKGKHSSP----DYVHVPETVFSL 542
++ P SSD L + + G HSS + + + S
Sbjct: 244 SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG-HSSSVLSVAFSPDGKLLASG 302
Query: 543 SE--------------KPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS 586
S + GH V LS+S S L+ S D T+RLWD+ T
Sbjct: 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362
Query: 587 CLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS-DRLVVDWTDLHEMVTAACYT 645
LK + V + F+P D SGS D VR+W +S L+ + VT+ ++
Sbjct: 363 PLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFS 421
Query: 646 PDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685
PDG++ GS + RL+ ++ S D + S
Sbjct: 422 PDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKS 461
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.2 bits (121), Expect = 2e-06
Identities = 58/255 (22%), Positives = 94/255 (36%), Gaps = 26/255 (10%)
Query: 540 FSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTC 599
L + + L + S LLL+ D V L D S L L H D +T
Sbjct: 14 KLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPD---LSSLLLRGHEDSITS 70
Query: 600 IQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTDLHEMVTAACYTPDGQN--ALI 653
I F+P D + +SGS D +++W + + ++ + A +PDG +
Sbjct: 71 IAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129
Query: 654 GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713
S G+ +L+ + + + +T FSP +S D I++
Sbjct: 130 SSLDGTVKLWDLSTPGKL-------IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182
Query: 714 LDGLDIVHKFRGFRNTSSQISA-AFNADGKYII-SASEDSQVYVWKREEHRNASTGKRAI 771
D L + +S+ AF+ DG +I S S D + +W + STGK
Sbjct: 183 WD-LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW------DLSTGKLLR 235
Query: 772 ITTRNHEHFQCKDVS 786
T H S
Sbjct: 236 STLSGHSDSVVSSFS 250
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-06
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 544 EKPFCSFIGHLDDVLDLSWSRSH-LLLSSSMDKTVRLWD 581
K + GH V +++S LL S S D TVR+WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-05
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 585 KSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623
K L H VT + F+P D + SGS D VR+W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 585 KSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623
+ L H VT + F+P D Y SGS D +++W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-05
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 543 SEKPFCSFIGHLDDVLDLSWS-RSHLLLSSSMDKTVRLWD 581
S + + GH V +++S L S S D T++LWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-05
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479
L + ++ H G + ++ FS D ++LAS +D I +W+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 8e-05
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVW 478
+ ++ H G + ++ FS D LAS +D + VW
Sbjct: 5 RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 8e-04
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 17/95 (17%)
Query: 546 PFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDM--------ETKS--CLKLFAH 593
P GH +LDL ++ S +L S S D T+R+W++ E K C+ L H
Sbjct: 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI-LKGH 124
Query: 594 NDYVTCIQFNPMDDDYFI--SGSLDAKVRIWSISD 626
++ I +NPM+ Y+I S D+ V IW I +
Sbjct: 125 KKKISIIDWNPMN--YYIMCSSGFDSFVNIWDIEN 157
|
Length = 568 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 683 KSSTRKITGFQFSPSNPSEVLVT-SADSRIRILDGLDIVHKFRGFRNTSSQISA-AFNAD 740
K T +T FSP ++L T S D I++ D L+ R + + + A +AD
Sbjct: 6 KGHTGGVTCVAFSPD--GKLLATGSGDGTIKVWD-LETGELLRTLKGHTGPVRDVAASAD 62
Query: 741 GKYIISASEDSQVYVWKRE 759
G Y+ S S D + +W E
Sbjct: 63 GTYLASGSSDKTIRLWDLE 81
|
Length = 289 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 29/162 (17%), Positives = 47/162 (29%), Gaps = 16/162 (9%)
Query: 790 PWPGMVKGEPPPTPVQTKKHAKRISSNPTS--------ATSSPTKEGSPAGHSRRLLPPL 841
P P PPP+P R +P A +SP S A SR+ PL
Sbjct: 117 PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPL 176
Query: 842 --------PKKTNKVERVPSPPEEELSLISHDPGISESFTSNSSSIRSGDSPSISTASET 893
+ E PS P S S +++S + G S + + +
Sbjct: 177 SSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASS 236
Query: 894 NSNSYSPRQDDPASISSSTDRNSSSFTNWSSWFDVGSHSSHT 935
+ +S S + + + S +
Sbjct: 237 SDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGP 278
|
Length = 1352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 969 | |||
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.98 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.95 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.95 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.94 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.93 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.92 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.92 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.91 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.91 | |
| PTZ00421 | 493 | coronin; Provisional | 99.91 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.9 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.9 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| PTZ00420 | 568 | coronin; Provisional | 99.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.9 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.9 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.89 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.89 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.89 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.89 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.88 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.88 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.88 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.88 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.88 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.87 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.86 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.86 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.86 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.85 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.85 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.85 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.85 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.85 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.84 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.84 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.83 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.83 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.82 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.82 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.82 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.82 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.81 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.81 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.8 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.79 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.79 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.79 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.77 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.76 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.76 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.76 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.75 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.74 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.71 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.7 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.7 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.7 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.69 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.69 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.68 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.67 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.66 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.66 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.66 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.65 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.64 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.64 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.61 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.6 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.59 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.59 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.59 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.59 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.59 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.57 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.57 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.54 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.52 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.52 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.51 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.51 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.5 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.48 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.47 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.47 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.47 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.46 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.46 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.43 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.41 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.41 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.4 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.37 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.37 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.37 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.35 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.35 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.3 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.27 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.25 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.25 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.22 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.21 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.21 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.2 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.2 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.2 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.2 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.18 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.16 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.13 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.13 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.13 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.11 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.11 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.1 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.09 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.08 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.07 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.07 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.04 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.98 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.98 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.95 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.95 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.94 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.93 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.92 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.92 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.91 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.9 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.86 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.82 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.82 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.79 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.78 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.78 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.78 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.76 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.76 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.69 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.67 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.66 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.66 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.66 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.66 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.64 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.62 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.61 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.56 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.48 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.48 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.45 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.45 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.44 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.43 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.43 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.42 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.41 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.4 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.37 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.32 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.31 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.31 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.29 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.29 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.28 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.26 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.24 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.24 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.21 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.2 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.18 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.18 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.18 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.17 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.16 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.14 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.13 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.12 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.01 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.98 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.96 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.96 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.91 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.89 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.88 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.85 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.82 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.81 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.8 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.78 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.75 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.73 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.73 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.72 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.63 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.62 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.61 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.6 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.53 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.53 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.49 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.47 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.43 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.37 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.34 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.28 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.25 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.24 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.21 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.2 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.19 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.18 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.16 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.12 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.06 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.05 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.96 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.93 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.92 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.84 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.78 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.76 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.73 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.7 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.7 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.62 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.61 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.57 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.51 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.49 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.46 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.45 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.45 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.39 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.1 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.07 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.98 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.94 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 95.92 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.85 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.41 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 95.38 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.34 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.05 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.99 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.97 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.87 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.46 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.31 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.29 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 93.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.98 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 93.83 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.82 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 93.81 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 93.7 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 93.7 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 93.56 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.44 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 93.37 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 93.19 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.11 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.81 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 92.77 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.77 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.57 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.54 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 92.28 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 92.24 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 92.08 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 92.04 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 91.98 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 91.5 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 91.44 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 91.41 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 91.4 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 91.28 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 91.18 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 91.0 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 90.98 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 90.72 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 90.61 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.1 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 90.01 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 89.37 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 89.23 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.7 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 88.16 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 88.16 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 87.63 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 87.09 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 86.8 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 86.69 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 86.61 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 86.49 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 86.32 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 86.29 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 86.05 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 85.01 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 84.32 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 83.58 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 82.88 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 82.73 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 82.32 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 82.25 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 81.67 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 81.19 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 80.93 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 80.83 | |
| PLN02153 | 341 | epithiospecifier protein | 80.73 | |
| PRK10115 | 686 | protease 2; Provisional | 80.55 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 80.16 |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-71 Score=635.27 Aligned_cols=589 Identities=47% Similarity=0.750 Sum_probs=424.1
Q ss_pred CCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccc--cccCC-CCccccccccccc--cc
Q 002086 297 LDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVN--RINDS-AGKFSANSYLSKS--LR 371 (969)
Q Consensus 297 ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~--~~~t~-s~d~~v~~~~~~~--~~ 371 (969)
+++|.++++.+...++++.++-|++++.++++++|+...|.+..|..++.+++.. ...+. .++. .+. ..
T Consensus 106 ~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~~e~~e~~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~------s~s~~~~ 179 (712)
T KOG0283|consen 106 LDTGDEFSVSENPEDGSVNRLSDVGTGASSTLEELESSPGESSRVKELGDRENADLDEMLTKYNDDV------SGSVLLR 179 (712)
T ss_pred ecccceeeEeeccCccccccccCCCcccccccccccCCcCcccchhhhhhhcccccchhhccccccc------ccccccc
Confidence 5899999999999999999999999999999999999999999999999655443 11111 1111 111 11
Q ss_pred ccccccccccceeeeeEEEeeecCC--ccc----cCCCCcccchHHHHH---HhhccccCcceEEEccCCCcccccccce
Q 002086 372 MSKRRGAALLKNIKGVAHSMSVKGD--KEC----INPNPLLGDQREQKE---QKQNKNVSNHWVKVRQSGKSYKDLSALH 442 (969)
Q Consensus 372 ~~k~~~~~~l~~v~gv~~s~~~~gd--~~~----~~~~~l~~~~~~~~~---~~~~~~~~~~~v~v~~~~~~l~dl~~~~ 442 (969)
..+.+...+++.++.++... .+. ... ............... ........+.++++.+.++..++|.++.
T Consensus 180 ~~~r~~~~~l~~~k~~~~~~--s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~ 257 (712)
T KOG0283|consen 180 KSKRYGKRWLKSLKVVAHSL--SSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALT 257 (712)
T ss_pred hhhhhhhhhhhhcccccccc--ccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeE
Confidence 12222223455555444443 111 000 000000000000000 0001123448999999999999999999
Q ss_pred eeeEec-ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 443 LCQEIQ-AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 443 l~~~L~-gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
..++++ +|.++|++|+||+||+||||||+|+.|+||.+...+......+...+++..............-. .......
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~-~~~~~~~ 336 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE-EKISSRT 336 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc-ccccccc
Confidence 999999 99999999999999999999999999999999876665444443333332222211100000000 0000000
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQ 601 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~ 601 (969)
.............++..++.+..+|++.|.||.+.|.+|.|+.+++|++++.|+||+||++...+|+++|.|.+.|+||+
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVA 416 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEE
Confidence 01111122233778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
|+|.|++||++|+.||+|+||++...+++.+......|++++|.|+|++.++|+.+|.+++|++...++....++.....
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888777
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC--CcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG--LDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~--~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
++.....|++++|.|..+..+++++.|..|||||+ ..++++|+++......+...|+.||++|+++++|..|+||++.
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 66666699999999988888999999999999999 7789999999998888999999999999999999999999997
Q ss_pred CCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCccc-ccCCCCCCccccCCCCcc
Q 002086 760 EHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSA-TSSPTKEGSPAGHSRRLL 838 (969)
Q Consensus 760 t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~-~~SP~~~~i~~~~~~~~L 838 (969)
...... ........+..++|.|..++++++|.+....... ....+... ...|..++..+.
T Consensus 577 ~~~~~~-~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~n~s------------s~~p~~~~~~~~~~~~~~~s~------ 637 (712)
T KOG0283|consen 577 SFNSEA-SHKKTKSIRSYEHFSSVDVSVAIPWPGFHAHNPS------------SNLPPLIKAALRPVNEFKLSS------ 637 (712)
T ss_pred CCcccc-cccccccccccccccccccccccccccccccccc------------ccCCCCcccccCcccccccCC------
Confidence 653322 2234556778899999999999999999765530 00000000 011111111110
Q ss_pred ccCCCCCCccccCCCCCCCCccccccCCCCCCccccCCCccccCCCCCCcccCCCCCCCCCCCCCCCcccccccCCCCCC
Q 002086 839 PPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSNSSSIRSGDSPSISTASETNSNSYSPRQDDPASISSSTDRNSSS 918 (969)
Q Consensus 839 ~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s~~~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (969)
+..+-.-....++|++.+.... .++ . ++
T Consensus 638 ---~~~~~~~~~s~t~~e~~~~~s~----------------------~~~-----~----------------------~~ 665 (712)
T KOG0283|consen 638 ---PMRSLNSRGSATWPEEKLLDSP----------------------GAS-----A----------------------SS 665 (712)
T ss_pred ---ccccccccccccCccccccccc----------------------Ccc-----c----------------------cc
Confidence 1111111112256666543221 111 0 12
Q ss_pred ccccccccccCCCCCCccccceeeEEEEEeecCCEEEEEEeeCCcccc
Q 002086 919 FTNWSSWFDVGSHSSHTVQATAWGLVIVTATLGGEIKTYQNFGIPRRL 966 (969)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~g~~~vt~g~dg~~r~~~~~~~~~~~ 966 (969)
+..+ +++.+..+..+..++++||+|||||+|||.||+|||||||+++
T Consensus 666 ~~~~-~~~~S~~~~~~~~~~~~wg~vivTs~~~g~Ir~~~n~glp~~~ 712 (712)
T KOG0283|consen 666 RSSI-KFLMSGCQRSSSSSPHAWGMVIVTSTLDGQIRCFQNYGLPRRV 712 (712)
T ss_pred cccc-ccccCCCccccccccCCCcceeeeccccceEEEEEecCCCCCC
Confidence 2222 4555554555566699999999999999999999999999985
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=357.64 Aligned_cols=399 Identities=18% Similarity=0.256 Sum_probs=309.3
Q ss_pred CCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeee-cccccccccCCCCccccccccccccccccccc
Q 002086 299 TGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELM-RRENVNRINDSAGKFSANSYLSKSLRMSKRRG 377 (969)
Q Consensus 299 ~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~-~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~ 377 (969)
+.+..+|.|+.+ ++.+++-|++|..+ ..+.||++.|++|+ ++.+|++++|+++|+++++|++++|||+....
T Consensus 115 s~RI~avGEGre--rfg~~F~~DSG~Sv-----Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r 187 (603)
T KOG0318|consen 115 SKRIAAVGEGRE--RFGHVFLWDSGNSV-----GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFR 187 (603)
T ss_pred CcEEEEEecCcc--ceeEEEEecCCCcc-----ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccc
Confidence 333344455444 46677777777763 56699999999999 78999999999999999999999999998754
Q ss_pred ccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEE
Q 002086 378 AALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTI 457 (969)
Q Consensus 378 ~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l 457 (969)
.|.+++++++|++ .|.... + ...++++++|++++++++.++.. -.+|.+.|++|
T Consensus 188 -~HskFV~~VRysP--DG~~Fa--t---------------~gsDgki~iyDGktge~vg~l~~------~~aHkGsIfal 241 (603)
T KOG0318|consen 188 -EHSKFVNCVRYSP--DGSRFA--T---------------AGSDGKIYIYDGKTGEKVGELED------SDAHKGSIFAL 241 (603)
T ss_pred -ccccceeeEEECC--CCCeEE--E---------------ecCCccEEEEcCCCccEEEEecC------CCCccccEEEE
Confidence 5788999999888 444433 1 45788999999988887766653 34899999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCcc----CcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 458 KFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLT----PIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 458 ~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~----~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
+|+||++.|+|++.|.++||||+.+.+++.++..... .+..+.........++.|.......
T Consensus 242 sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~-------------- 307 (603)
T KOG0318|consen 242 SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNP-------------- 307 (603)
T ss_pred EECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecc--------------
Confidence 9999999999999999999999999998886543222 0000000011111222222221111
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEE
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYF 610 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L 610 (969)
....++..+.||...|+++..++ +.+|++|+.||.|.-||..++..-+.+ .|...|.+++-+ ....+
T Consensus 308 --------~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~--~~~~~ 377 (603)
T KOG0318|consen 308 --------SDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS--ESGEL 377 (603)
T ss_pred --------cCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec--CCCcE
Confidence 23447778999999999999999 899999999999999999999988775 799999999987 35788
Q ss_pred EEEECCCeEEEEeCCCce------------E--------------------EEE--------ecCCCCEEEEEEccCCCE
Q 002086 611 ISGSLDAKVRIWSISDRL------------V--------------------VDW--------TDLHEMVTAACYTPDGQN 650 (969)
Q Consensus 611 ~sgs~Dg~I~IWDl~~~~------------~--------------------~~~--------~~~~~~V~sv~fspdg~~ 650 (969)
++++.|.++++.++..+. + +-+ ........+++++|++..
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~ 457 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE 457 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE
Confidence 899999999999773310 0 001 112234688999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee-cCC
Q 002086 651 ALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF-RNT 729 (969)
Q Consensus 651 Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~-~~~ 729 (969)
+++|+.||.|+||.+....+.... ....|..+|++++|+|++ .+|+++...+.+.+||........... -|.
T Consensus 458 vaVGG~Dgkvhvysl~g~~l~ee~------~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~~~~~w~FHt 530 (603)
T KOG0318|consen 458 VAVGGQDGKVHVYSLSGDELKEEA------KLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREVKTNRWAFHT 530 (603)
T ss_pred EEEecccceEEEEEecCCccccee------eeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCceecceeeeee
Confidence 999999999999999987653322 226789999999999999 899999999999999976544333333 378
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 730 SSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 730 ~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
..|.+++|+|+..+||||+.|-+|.||+++.+
T Consensus 531 akI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 531 AKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred eeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 88999999999999999999999999999986
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=321.00 Aligned_cols=328 Identities=17% Similarity=0.281 Sum_probs=277.6
Q ss_pred hhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHH
Q 002086 332 EKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQRE 411 (969)
Q Consensus 332 ~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~ 411 (969)
..+.||...|.++.|..++..+++|++|.++.+|+ +......+.++.+..-+.+++.+||...++++.
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD-----~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~------- 176 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWD-----LDTETPLFTCKGHKNWVLCVAWSPDGKKIASGS------- 176 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeec-----cCCCCcceeecCCccEEEEEEECCCcchhhccc-------
Confidence 45689999999999988999999999999998775 444444455666666777777788888877652
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeC-----CCCEEEEEeCCCcEEEEecccceEE
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSL-----DARFLASAGEDRVIHVWEVQECEVM 486 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSp-----Dg~~LaTgs~DgtVrIWDl~tg~~l 486 (969)
.++.+.++..+++. +....|.+|...|++|+|.| ..++||+++.||.|+|||+..+.++
T Consensus 177 --------~dg~I~lwdpktg~--------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 177 --------KDGSIRLWDPKTGQ--------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred --------cCCeEEEecCCCCC--------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE
Confidence 23334444433443 34567999999999999986 6779999999999999999876665
Q ss_pred EeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCc
Q 002086 487 SMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSH 566 (969)
Q Consensus 487 ~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~ 566 (969)
. .+.||+.+|+|+.|--..
T Consensus 241 ~-------------------------------------------------------------~lsgHT~~VTCvrwGG~g 259 (480)
T KOG0271|consen 241 R-------------------------------------------------------------TLSGHTASVTCVRWGGEG 259 (480)
T ss_pred E-------------------------------------------------------------EeccCccceEEEEEcCCc
Confidence 4 677899999999998889
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEe-----------c------------------------CCCCEE
Q 002086 567 LLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFN-----------P------------------------MDDDYF 610 (969)
Q Consensus 567 ~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fs-----------p------------------------~~~~~L 610 (969)
+|++||.|++|++|+...|.+...+ +|...|+.|+.+ | ..+..+
T Consensus 260 liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 260 LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 9999999999999999999988877 899999999877 2 123459
Q ss_pred EEEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC
Q 002086 611 ISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK 688 (969)
Q Consensus 611 ~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~ 688 (969)
++|+.|.++.+|+....+ +....+|..-|+.+.|+||++++|+++-|..|++||.++++.+.. ..+|...
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~las--------fRGHv~~ 411 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLAS--------FRGHVAA 411 (480)
T ss_pred EEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhh--------hhhccce
Confidence 999999999999986433 446778889999999999999999999999999999999986544 3889999
Q ss_pred eEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 689 ITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
|+.++|+.|. .+|++|+.|.++++|++++.........|...|.++.|+|||+.+++|+.|..+++|.
T Consensus 412 VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 412 VYQVAWSADS-RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eEEEEeccCc-cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999987 8999999999999999988888788888899999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=317.07 Aligned_cols=335 Identities=20% Similarity=0.298 Sum_probs=272.0
Q ss_pred cceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCccccccc
Q 002086 423 NHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCN 502 (969)
Q Consensus 423 ~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~ 502 (969)
.....+.+.....+.-.-.++...+.||.++|.|+.|+|+|.+||||+.|.++|+||+.+.
T Consensus 87 ~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te------------------- 147 (480)
T KOG0271|consen 87 DVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE------------------- 147 (480)
T ss_pred heeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-------------------
Confidence 3333344444433333445677889999999999999999999999999999999999753
Q ss_pred CCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEE
Q 002086 503 SSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWD 581 (969)
Q Consensus 503 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWD 581 (969)
.|..+.++|...|.|++|+| +..|++|+.||+|++||
T Consensus 148 ------------------------------------------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 148 ------------------------------------------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred ------------------------------------------CcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34457889999999999999 89999999999999999
Q ss_pred CCCCcEEEE-e-ecCCCeEEEEEecC----CCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEE
Q 002086 582 METKSCLKL-F-AHNDYVTCIQFNPM----DDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIG 654 (969)
Q Consensus 582 l~t~~~i~~-~-~h~~~V~sv~fsp~----~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasg 654 (969)
..+++++-. + +|...|++++|.|. ...+|++++.||.|+|||+..+.++ .+.+|..+|+|+.|--+| ++++|
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEec
Confidence 999987743 3 89999999999873 3468999999999999999988654 567788999999998664 89999
Q ss_pred eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc-----------CC------------------------CC
Q 002086 655 SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS-----------PS------------------------NP 699 (969)
Q Consensus 655 s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs-----------pd------------------------~~ 699 (969)
+.|++|++|+...+.+.. ..++|...|+.++.+ |. ++
T Consensus 265 S~DrtIkvw~a~dG~~~r--------~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCR--------ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred CCCceEEEEEccchhHHH--------hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 999999999999887543 337888888888876 22 23
Q ss_pred ceEEEEeCCCcEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCC
Q 002086 700 SEVLVTSADSRIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHE 778 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~ 778 (969)
..+++|+.|.++.+|+..... ...+...|..-|+.+.||||++|+|+++-|..|++|+-.+++.+.+.+ .+..
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR------GHv~ 410 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR------GHVA 410 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh------hccc
Confidence 469999999999999966543 334456677889999999999999999999999999999966555433 2211
Q ss_pred ceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCC
Q 002086 779 HFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEE 858 (969)
Q Consensus 779 ~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~ 858 (969)
.+. - .+.|.+..++.+.+.|..|..|...+.++..-|.+|..+
T Consensus 411 ~VY------q-------------------------------vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE 453 (480)
T KOG0271|consen 411 AVY------Q-------------------------------VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE 453 (480)
T ss_pred eeE------E-------------------------------EEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce
Confidence 111 1 123556667889999999999999999999999999999
Q ss_pred ccccccCCCCCC
Q 002086 859 LSLISHDPGISE 870 (969)
Q Consensus 859 l~~is~hP~~~~ 870 (969)
+.++-|.|...-
T Consensus 454 Vf~vDwspDG~r 465 (480)
T KOG0271|consen 454 VFAVDWSPDGQR 465 (480)
T ss_pred EEEEEecCCCce
Confidence 999999999553
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=284.35 Aligned_cols=288 Identities=20% Similarity=0.323 Sum_probs=242.2
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
..++|+||.+.|+++.|++|.++|++++.||.+.|||.-+...+..+......+-...+.+.....+..|-.+.
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~------ 120 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNK------ 120 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCce------
Confidence 44789999999999999999999999999999999999887776665555555555555554443333322111
Q ss_pred cCCCCCCCCcccccceeeecC-------CCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecC
Q 002086 523 KKGKHSSPDYVHVPETVFSLS-------EKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHN 594 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~-------~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~ 594 (969)
..+|.+. .+....+.+|++-+.|+.|.++..|+|+|.|.++.+||+++++.+..| +|.
T Consensus 121 --------------Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~ 186 (343)
T KOG0286|consen 121 --------------CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHT 186 (343)
T ss_pred --------------eEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCc
Confidence 1111111 123457899999999999999999999999999999999999999998 899
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
+.|.++.+.|.+++.|++|+-|+..++||++.+..++ +.+|...|++++|.|+|.-|++|+.|+++++||++..+.+..
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ 266 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV 266 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee
Confidence 9999999999889999999999999999999987664 667888999999999999999999999999999999876655
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
.. ......+|++++|+..| ++|++|..|.++.+||..+.........|...|.++..+|||.-|+||+.|.+|
T Consensus 267 ys------~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 267 YS------HDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred ec------cCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence 43 24456789999999988 899999999999999988777777777888899999999999999999999999
Q ss_pred EEEE
Q 002086 754 YVWK 757 (969)
Q Consensus 754 ~IWd 757 (969)
+||.
T Consensus 340 riW~ 343 (343)
T KOG0286|consen 340 RIWA 343 (343)
T ss_pred eecC
Confidence 9994
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=308.12 Aligned_cols=289 Identities=22% Similarity=0.379 Sum_probs=248.0
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCC-CCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSD-KASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~-~~~~~~g~~~~~~~ 519 (969)
+.+...--|-+.+|..+.|+.|++.|||||.+|.++||+..++..+..+.+|...+....+.+.. ......+..
T Consensus 165 ~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~----- 239 (459)
T KOG0272|consen 165 LELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASA----- 239 (459)
T ss_pred hhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeecc-----
Confidence 33333344778999999999999999999999999999999999999999998888777777663 211111111
Q ss_pred ccccCCCCCCCCcccccceeeecCC-CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSE-KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~-k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
.....+|..+. .++..+.||...|..++|+| |++|+|++.|.+-++||+.++..+... +|...
T Consensus 240 --------------Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~ 305 (459)
T KOG0272|consen 240 --------------DGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG 305 (459)
T ss_pred --------------CCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccc
Confidence 11223444444 78889999999999999999 999999999999999999999877655 99999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
|.+++|++ +|.++++|+.|..-+|||++++..+ .+.+|..+|..|+|+|+|..||+|+.|++++|||++.......
T Consensus 306 v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~-- 382 (459)
T KOG0272|consen 306 VFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT-- 382 (459)
T ss_pred cceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee--
Confidence 99999999 9999999999999999999998765 4566789999999999999999999999999999998776433
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
..+|..-|+.+.|+|..+.+|++++.|++++||........-....|...|.++.+++|+.+|+|++.|.+|++
T Consensus 383 ------ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 383 ------IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred ------cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeee
Confidence 27899999999999977799999999999999998887776667778889999999999999999999999999
Q ss_pred EE
Q 002086 756 WK 757 (969)
Q Consensus 756 Wd 757 (969)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 95
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=315.27 Aligned_cols=434 Identities=19% Similarity=0.246 Sum_probs=306.1
Q ss_pred cEEEEeeCCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccC-CCcceeeeecccccccccCCCCcccccccccc
Q 002086 290 AFFLIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVG-HSPVVKELMRRENVNRINDSAGKFSANSYLSK 368 (969)
Q Consensus 290 ~~~~i~~ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~G-Hs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~ 368 (969)
..+.-.+++-.+++++..+ .++.+++|++.+|+. ++...+ |+.+|.-+++...+..+++|+-|..+.
T Consensus 63 d~ita~~l~~d~~~L~~a~--rs~llrv~~L~tgk~-----irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~----- 130 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTAS--RSQLLRVWSLPTGKL-----IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVK----- 130 (775)
T ss_pred hhhheeeecCCccEEEEee--ccceEEEEEcccchH-----hHhHhhccCCCeEEEEEcCCCceEEeccccceEE-----
Confidence 3333344443344444332 368899999999987 466666 999999999877778899999999764
Q ss_pred cccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccc-eeeeEe
Q 002086 369 SLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSAL-HLCQEI 447 (969)
Q Consensus 369 ~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~-~l~~~L 447 (969)
+|++....+.+.++++.|++.++.|+++... .++.. +....-+++| ++... .++.++
T Consensus 131 VWdi~~~~~th~fkG~gGvVssl~F~~~~~~----~lL~s-----------g~~D~~v~vw-------nl~~~~tcl~~~ 188 (775)
T KOG0319|consen 131 VWDIKNGYCTHSFKGHGGVVSSLLFHPHWNR----WLLAS-----------GATDGTVRVW-------NLNDKRTCLHTM 188 (775)
T ss_pred EEEeeCCEEEEEecCCCceEEEEEeCCccch----hheee-----------cCCCceEEEE-------EcccCchHHHHH
Confidence 5567888889999999999999999988765 22222 2222233333 33211 157889
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCcc---Cc-----------ccccccCCCCCccCC--
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLT---PI-----------HPSLCNSSDKASSLD-- 511 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~---~v-----------~~~~~~~~~~~~~~~-- 511 (969)
+.|...|++++|++|+.-++++|.|..|.|||+.+.+.+........ .+ .....+.......++
T Consensus 189 ~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~e 268 (775)
T KOG0319|consen 189 ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSE 268 (775)
T ss_pred HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecc
Confidence 99999999999999999999999999999999876554432211000 00 000000000000000
Q ss_pred --------------------------------CCCCCCCc--cccc-----CCCC---CCCCccc------------ccc
Q 002086 512 --------------------------------GSSPNPPP--EKKK-----KGKH---SSPDYVH------------VPE 537 (969)
Q Consensus 512 --------------------------------g~~~~~~~--~~~~-----~~~~---~~~~~~~------------~~~ 537 (969)
........ .... .+.. ..-.+.. ...
T Consensus 269 s~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~l 348 (775)
T KOG0319|consen 269 SGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPEL 348 (775)
T ss_pred cchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCce
Confidence 00000000 0000 0000 0000000 011
Q ss_pred eeeecCCCceeEeccCCCCEEEEE-ecCCcEEEEEeCCCcEEEEECCCCcEEEE-----eecCCCeEEEEEecCCCCEEE
Q 002086 538 TVFSLSEKPFCSFIGHLDDVLDLS-WSRSHLLLSSSMDKTVRLWDMETKSCLKL-----FAHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 538 ~v~~~~~k~~~~l~gH~~~I~~l~-fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~-----~~h~~~V~sv~fsp~~~~~L~ 611 (969)
+++...+..-..+.||+..|.++. |+.+.+|+||+.|++|++|.++.+..... .+|++.|.+++++.....+|+
T Consensus 349 r~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffv 428 (775)
T KOG0319|consen 349 RLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFV 428 (775)
T ss_pred EEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEE
Confidence 233334444456789999999999 55578999999999999999855543322 289999999999875667999
Q ss_pred EEECCCeEEEEeCCCce----EE------EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 612 SGSLDAKVRIWSISDRL----VV------DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~----~~------~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+++.|++|++|++...+ +. ....|...|++++++|+.+++++|+.|.+.+||+++.......
T Consensus 429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v-------- 500 (775)
T KOG0319|consen 429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV-------- 500 (775)
T ss_pred EecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE--------
Confidence 99999999999997621 11 2345778899999999999999999999999999996655433
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
..+|...|.++.|+|.+ +.++++|.|++|+||.+.+..+.-...+|...|..+.|-.+|+.|++++.||.|+||++++.
T Consensus 501 LsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eeCCccceEEEEecccc-ceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 38999999999999977 89999999999999998876666555667888999999999999999999999999999996
Q ss_pred CccCC
Q 002086 762 RNAST 766 (969)
Q Consensus 762 ~~~~t 766 (969)
++..+
T Consensus 580 eC~~t 584 (775)
T KOG0319|consen 580 ECEMT 584 (775)
T ss_pred hhhhh
Confidence 65443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=275.56 Aligned_cols=302 Identities=19% Similarity=0.281 Sum_probs=249.1
Q ss_pred cceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.+.+..+|++|.+.|+.++..+. ...|++++.|.++.+|++.....
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~--------------------------------- 50 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI--------------------------------- 50 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc---------------------------------
Confidence 35567789999999999999987 45899999999999999874211
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
.-+.+++.+.||...|..+..++ +++.++++.|+++++||+.+++..+.| +|...
T Consensus 51 -----------------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d 107 (315)
T KOG0279|consen 51 -----------------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD 107 (315)
T ss_pred -----------------------ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc
Confidence 12456678999999999999998 899999999999999999999888777 99999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC--CCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL--HEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~--~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
|.+++|++ +..+|++|+.|.+|++|++........... .+.|+|+.|+|+ ..+|+.++.|++|++||+++.+...
T Consensus 108 Vlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 108 VLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred eEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence 99999999 999999999999999999998887777665 688999999998 6789999999999999999887544
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
. ..+|.+.++.+.++||| .+.++|+.||.+.+||+.+... +....+...|.+++|+|+.-.|+.+. +..
T Consensus 187 ~--------~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~-lysl~a~~~v~sl~fspnrywL~~at-~~s 255 (315)
T KOG0279|consen 187 T--------FIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN-LYSLEAFDIVNSLCFSPNRYWLCAAT-ATS 255 (315)
T ss_pred c--------cccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCce-eEeccCCCeEeeEEecCCceeEeecc-CCc
Confidence 3 37899999999999999 8999999999999999888776 44456778899999999865555544 566
Q ss_pred EEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcccc
Q 002086 753 VYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG 832 (969)
Q Consensus 753 I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~ 832 (969)
|+|||++++..+..-+.-..-. ..+.....-..+++|++|+.++++
T Consensus 256 IkIwdl~~~~~v~~l~~d~~g~----------------------------------s~~~~~~~clslaws~dG~tLf~g 301 (315)
T KOG0279|consen 256 IKIWDLESKAVVEELKLDGIGP----------------------------------SSKAGDPICLSLAWSADGQTLFAG 301 (315)
T ss_pred eEEEeccchhhhhhcccccccc----------------------------------ccccCCcEEEEEEEcCCCcEEEee
Confidence 9999999865554332111000 111222334456789999999999
Q ss_pred CCCCccccCCC
Q 002086 833 HSRRLLPPLPK 843 (969)
Q Consensus 833 ~~~~~L~~~~~ 843 (969)
..+..+.+|..
T Consensus 302 ~td~~irv~qv 312 (315)
T KOG0279|consen 302 YTDNVIRVWQV 312 (315)
T ss_pred ecCCcEEEEEe
Confidence 99999998854
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=294.11 Aligned_cols=513 Identities=15% Similarity=0.165 Sum_probs=336.9
Q ss_pred CCCCccccccccCccccccccccCCcEEEEeeCCCCcEEEEeeccCCCce--------eEEEecCCCce---eeeeehhh
Q 002086 265 SSGNSVRSVRRSGNFASILSSSRLGAFFLIKNLDTGKEFIVNEYSENGMW--------NKLSDLQTGKQ---LTMEEFEK 333 (969)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ld~g~~~vv~~~~~dg~~--------~~lWd~~tgk~---l~~~E~~~ 333 (969)
-||++.-.+.+..++-+.+-+.-..-++.-.++.. -+-+..|++||.. +.+|..-.-.. ..+.-.++
T Consensus 63 lSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~--~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~ 140 (893)
T KOG0291|consen 63 LSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKR--GVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRT 140 (893)
T ss_pred eCCCceEEEEEcCCCcEEEEecccceeeEEEeecC--ccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeee
Confidence 34666666666655544443332333332223222 2334445555544 47787743322 22333456
Q ss_pred ccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHH
Q 002086 334 SVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQK 413 (969)
Q Consensus 334 ~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~ 413 (969)
..||...|.++.+..+...++++++|.++..|....++- .....+.+++..+-+-.|.-+...++...
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~---~~~~~l~gHkd~VvacfF~~~~~~l~tvs--------- 208 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN---LFTYALNGHKDYVVACFFGANSLDLYTVS--------- 208 (893)
T ss_pred ecCCccceeEEEeccCCceEEeccccceEEEEEeccccc---cceEeccCCCcceEEEEeccCcceEEEEe---------
Confidence 689999999999999999999999999887765443222 11223333333222222332322222110
Q ss_pred HHhhccccCcceEEEcc---------------------CCCc-cccccccee-eeEecccccCEEEEEEeCCCCEEEEEe
Q 002086 414 EQKQNKNVSNHWVKVRQ---------------------SGKS-YKDLSALHL-CQEIQAHEGSIWTIKFSLDARFLASAG 470 (969)
Q Consensus 414 ~~~~~~~~~~~~v~v~~---------------------~~~~-l~dl~~~~l-~~~L~gH~~~I~~l~fSpDg~~LaTgs 470 (969)
.++....|-+... .++. .......+. ..-|..-...|+|.+|++.-++||+|-
T Consensus 209 ----kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgF 284 (893)
T KOG0291|consen 209 ----KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGF 284 (893)
T ss_pred ----cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEe
Confidence 0011111111100 0000 000000000 111223347899999999999999999
Q ss_pred CCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeec-CCCceeE
Q 002086 471 EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSL-SEKPFCS 549 (969)
Q Consensus 471 ~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~k~~~~ 549 (969)
..|...+|++....++..+.....++..+.+...+.-.++.+... ....+|.. .+.-+..
T Consensus 285 ssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~kl-------------------gQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 285 SSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKL-------------------GQLLVWEWQSESYVLK 345 (893)
T ss_pred cCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCcc-------------------ceEEEEEeeccceeee
Confidence 999999999999988887766656665555554333222222110 01123333 2334456
Q ss_pred eccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc
Q 002086 550 FIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 550 l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~ 627 (969)
.+||...|.+++++| +++++||+.||.|+|||..++-|+.+| .|+..|+.+.|+. .++.+++.+.||+|+.||+...
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeeccc
Confidence 789999999999999 899999999999999999999999999 8999999999999 9999999999999999999988
Q ss_pred eEEEEecCCCC--EEEEEEccCCCEEEEEeCCC-cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 628 LVVDWTDLHEM--VTAACYTPDGQNALIGSHKG-SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 628 ~~~~~~~~~~~--V~sv~fspdg~~Lasgs~dg-~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
.....+....+ ..|++..|.|..+++|+.|. .|++|++.+++++... .+|.++|.+++|+|.+ ..|++
T Consensus 425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL--------sGHEgPVs~l~f~~~~-~~LaS 495 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL--------SGHEGPVSGLSFSPDG-SLLAS 495 (893)
T ss_pred ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh--------cCCCCcceeeEEcccc-CeEEe
Confidence 87777766654 57888899999999999876 7999999999976553 8999999999999998 79999
Q ss_pred EeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeee
Q 002086 705 TSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKD 784 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~ 784 (969)
++.|.+|++||+.......+.......++.++|.|||+-|++++.||.|.+||.+......+-. .-...
T Consensus 496 ~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id------grkD~----- 564 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID------GRKDL----- 564 (893)
T ss_pred ccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc------chhhc-----
Confidence 9999999999977655555555666779999999999999999999999999998743321100 00000
Q ss_pred eEEeecCCCcccCCCCCccEEEccccc-ccCCCCcccccCCCCCCccccCCCCccccCCCCCCcc
Q 002086 785 VSVAIPWPGMVKGEPPPTPVQTKKHAK-RISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKV 848 (969)
Q Consensus 785 ~s~~~~w~~~i~G~~~~~~v~~~~~~~-~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~ 848 (969)
..|. ...-. ..... ..+-.+...+.|++|..|.+++....+..|....+.+
T Consensus 565 ----------~~gR-~~~D~--~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 565 ----------SGGR-KETDR--ITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred ----------cccc-cccce--eehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence 0000 00000 00011 1122345667788888888888877776666554433
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=271.67 Aligned_cols=291 Identities=22% Similarity=0.384 Sum_probs=237.2
Q ss_pred hhhccCCCcceeeee-cccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccch
Q 002086 331 FEKSVGHSPVVKELM-RRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQ 409 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~-~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~ 409 (969)
...+.||.+-|.+++ .+.++..+++++.|..+..|. +.+.
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~-----L~~d---------------------------------- 48 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWK-----LTSD---------------------------------- 48 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEE-----eccC----------------------------------
Confidence 356789999999999 566788888888887665543 1111
Q ss_pred HHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEee
Q 002086 410 REQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMS 489 (969)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~ 489 (969)
|...+..++.|+||+..|..+..++||++.++++.|+++++||+.+|+..+
T Consensus 49 ---------------------------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~-- 99 (315)
T KOG0279|consen 49 ---------------------------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR-- 99 (315)
T ss_pred ---------------------------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEE--
Confidence 112223455688999999999999999999999999999999999875543
Q ss_pred cCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE
Q 002086 490 EGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL 568 (969)
Q Consensus 490 ~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L 568 (969)
.|.||...|.+++|++ +..+
T Consensus 100 -----------------------------------------------------------~f~GH~~dVlsva~s~dn~qi 120 (315)
T KOG0279|consen 100 -----------------------------------------------------------RFVGHTKDVLSVAFSTDNRQI 120 (315)
T ss_pred -----------------------------------------------------------EEEecCCceEEEEecCCCcee
Confidence 6889999999999999 7899
Q ss_pred EEEeCCCcEEEEECCCCcEEEEee--cCCCeEEEEEecCC-CCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEE
Q 002086 569 LSSSMDKTVRLWDMETKSCLKLFA--HNDYVTCIQFNPMD-DDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACY 644 (969)
Q Consensus 569 ~Sgs~DgtV~IWDl~t~~~i~~~~--h~~~V~sv~fsp~~-~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~f 644 (969)
++|+.|++|++||+.......... +.+.|.|+.|+|.. ..+|++++.|++|++||+++.++.. +.+|.+.++.+++
T Consensus 121 vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~v 200 (315)
T KOG0279|consen 121 VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTV 200 (315)
T ss_pred ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEE
Confidence 999999999999998776666553 47899999999943 6799999999999999999988664 6678899999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE--
Q 002086 645 TPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK-- 722 (969)
Q Consensus 645 spdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~-- 722 (969)
+|||...++|+.||.+.+||++.++.... ..+...|.+++|+|.. +.++...+..|+|||.......
T Consensus 201 SpDGslcasGgkdg~~~LwdL~~~k~lys---------l~a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 201 SPDGSLCASGGKDGEAMLWDLNEGKNLYS---------LEAFDIVNSLCFSPNR--YWLCAATATSIKIWDLESKAVVEE 269 (315)
T ss_pred CCCCCEEecCCCCceEEEEEccCCceeEe---------ccCCCeEeeEEecCCc--eeEeeccCCceEEEeccchhhhhh
Confidence 99999999999999999999999887544 5678899999999974 6666677777999996532221
Q ss_pred ----EEee---cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 723 ----FRGF---RNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 723 ----~~~~---~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
+.+. .......+++|++||..|++|-.|+.|++|.+.
T Consensus 270 l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 270 LKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1111 123345688999999999999999999999875
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-31 Score=296.52 Aligned_cols=377 Identities=20% Similarity=0.301 Sum_probs=279.1
Q ss_pred eEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccc--cccccc------------------
Q 002086 315 NKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSK--SLRMSK------------------ 374 (969)
Q Consensus 315 ~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~--~~~~~k------------------ 374 (969)
.|||.+...+-+. ...+.||...|-++.+..+...+.|.+.|+.+..|.-- +...++
T Consensus 169 ~rl~~v~~~k~~~---~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~E 245 (893)
T KOG0291|consen 169 ARLFGVDGNKNLF---TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGE 245 (893)
T ss_pred EEEEEeccccccc---eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccch
Confidence 3899998877644 46678999999999999888889999999999888522 211111
Q ss_pred ---------ccccccc----ceeeeeEE-------EeeecCCc--cccCCCCcccch---HHHHHHhhccccCcceEEEc
Q 002086 375 ---------RRGAALL----KNIKGVAH-------SMSVKGDK--ECINPNPLLGDQ---REQKEQKQNKNVSNHWVKVR 429 (969)
Q Consensus 375 ---------~~~~~~l----~~v~gv~~-------s~~~~gd~--~~~~~~~l~~~~---~~~~~~~~~~~~~~~~v~v~ 429 (969)
+...+.+ ..+.+.++ .+.|..-. ....|...+-.. .++....-.-+....|+-.+
T Consensus 246 ek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g 325 (893)
T KOG0291|consen 246 EKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFG 325 (893)
T ss_pred hhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEc
Confidence 0000111 11111111 11111111 111121111110 00111111234456677665
Q ss_pred cCC---CcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCC
Q 002086 430 QSG---KSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDK 506 (969)
Q Consensus 430 ~~~---~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~ 506 (969)
..+ --+|+++....+...+||...|+|++++|||+++|||+.||.|||||...|-++.
T Consensus 326 ~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v------------------- 386 (893)
T KOG0291|consen 326 CSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV------------------- 386 (893)
T ss_pred CCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE-------------------
Confidence 444 2368899888999999999999999999999999999999999999998766544
Q ss_pred CccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC
Q 002086 507 ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK 585 (969)
Q Consensus 507 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~ 585 (969)
+|..|+..|+++.|+. ++.+++++.||+|+.||+...
T Consensus 387 ------------------------------------------TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 387 ------------------------------------------TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ------------------------------------------EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 6778999999999998 899999999999999999999
Q ss_pred cEEEEeec--CCCeEEEEEecCCCCEEEEEECCCe-EEEEeCCCceEEEE-ecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 002086 586 SCLKLFAH--NDYVTCIQFNPMDDDYFISGSLDAK-VRIWSISDRLVVDW-TDLHEMVTAACYTPDGQNALIGSHKGSCR 661 (969)
Q Consensus 586 ~~i~~~~h--~~~V~sv~fsp~~~~~L~sgs~Dg~-I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg~~Lasgs~dg~I~ 661 (969)
.+.++|.. .-...|++..| .+.++.+|+.|.. |++|++++|+++.. .+|.++|.+++|+|++..|++++.|.+|+
T Consensus 425 rNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred ceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE
Confidence 99999944 44567889988 8999999988864 99999999998874 56889999999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE------------------
Q 002086 662 LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF------------------ 723 (969)
Q Consensus 662 IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~------------------ 723 (969)
+||+-...-.. .. -.....++.++|.|+| ..|++++.||.|.+||........
T Consensus 504 iW~if~s~~~v-Et-------l~i~sdvl~vsfrPdG-~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ 574 (893)
T KOG0291|consen 504 IWDIFSSSGTV-ET-------LEIRSDVLAVSFRPDG-KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRI 574 (893)
T ss_pred EEEeeccCcee-ee-------EeeccceeEEEEcCCC-CeEEEEEecceEEEEEhhhceeeccccchhhcccccccccee
Confidence 99996652211 11 2346779999999999 899999999999999955433221
Q ss_pred --EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccC
Q 002086 724 --RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAS 765 (969)
Q Consensus 724 --~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~ 765 (969)
+........+.+++++||.+|++|+....|+||++.++-.++
T Consensus 575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 575 TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 011123567899999999999999999999999999865543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-31 Score=265.24 Aligned_cols=290 Identities=20% Similarity=0.368 Sum_probs=240.5
Q ss_pred CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeee--
Q 002086 464 RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFS-- 541 (969)
Q Consensus 464 ~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-- 541 (969)
-+|||+|.|.+||+|...+|.+..+++.....+..+...+.....+..+.... .+|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhv---------------------RlyD~~ 69 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHV---------------------RLYDLN 69 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCee---------------------EEEEcc
Confidence 48999999999999999999999998887777776666655444444333222 2222
Q ss_pred -cCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeE
Q 002086 542 -LSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKV 619 (969)
Q Consensus 542 -~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I 619 (969)
....|+..+.+|++.|+++.|.. +..++||+.||+++|||++...+.+.+.|..+|++|..+| +...|++|..+|.|
T Consensus 70 S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~i 148 (311)
T KOG0315|consen 70 SNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNI 148 (311)
T ss_pred CCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcE
Confidence 23458899999999999999997 8999999999999999999999999999999999999999 88999999999999
Q ss_pred EEEeCCCceEEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 620 RIWSISDRLVVDWTD--LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 620 ~IWDl~~~~~~~~~~--~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
++||+....+....- ....|.++...|||.+++.+...|++++|++-..... ..+....+...|.+-+..+.++|+
T Consensus 149 rvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~--s~l~P~~k~~ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 149 RVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA--SELEPVHKFQAHNGHILRCLLSPD 226 (311)
T ss_pred EEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc--ccceEhhheecccceEEEEEECCC
Confidence 999999875544332 3367999999999999999999999999999875432 223344556899999999999999
Q ss_pred CCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEeccc
Q 002086 698 NPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRN 776 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~ 776 (969)
+ ++|++++.|.+++||+.... ........|...+..++||.||+||+||+.|+.+++|++.. ++.+.....+
T Consensus 227 ~-k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~------~k~v~qy~gh 299 (311)
T KOG0315|consen 227 V-KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA------GKEVRQYQGH 299 (311)
T ss_pred C-cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc------CceeeecCCc
Confidence 8 89999999999999997766 44444556778899999999999999999999999999998 5666666677
Q ss_pred CCceeeee
Q 002086 777 HEHFQCKD 784 (969)
Q Consensus 777 ~~~~~~~~ 784 (969)
+....|..
T Consensus 300 ~K~~vc~~ 307 (311)
T KOG0315|consen 300 HKAAVCVA 307 (311)
T ss_pred ccccEEEE
Confidence 76666543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-29 Score=274.06 Aligned_cols=465 Identities=18% Similarity=0.223 Sum_probs=319.7
Q ss_pred CCccccccccCccccccccccCCcEEEEeeCCCCcEEEEeeccCCCcee---------EEEecCCCceeeeeehhhccCC
Q 002086 267 GNSVRSVRRSGNFASILSSSRLGAFFLIKNLDTGKEFIVNEYSENGMWN---------KLSDLQTGKQLTMEEFEKSVGH 337 (969)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ld~g~~~vv~~~~~dg~~~---------~lWd~~tgk~l~~~E~~~~~GH 337 (969)
|-+.+++-.||+- +.+-.++....+-|+.-. .-...|+.+++.|.++ |+||.....-+-+.||+-+.
T Consensus 28 pkgd~ilY~nGks-v~ir~i~~~~~~~iYtEH-~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a-- 103 (603)
T KOG0318|consen 28 PKGDNILYTNGKS-VIIRNIDNPASVDIYTEH-AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA-- 103 (603)
T ss_pred CCCCeEEEeCCCE-EEEEECCCccceeeeccc-cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc--
Confidence 3344555445532 233333333344444433 2334556677777776 99999775555557887776
Q ss_pred CcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCcc-ccCCCCcccchHHHHHHh
Q 002086 338 SPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKE-CINPNPLLGDQREQKEQK 416 (969)
Q Consensus 338 s~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~-~~~~~~l~~~~~~~~~~~ 416 (969)
++|..++...+..+++..++-. -+ .+..|.+........+..+.....++.|.+.+. ++.++
T Consensus 104 -G~I~Di~Wd~ds~RI~avGEGr-er--fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~------------- 166 (603)
T KOG0318|consen 104 -GPIKDISWDFDSKRIAAVGEGR-ER--FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATG------------- 166 (603)
T ss_pred -cccccceeCCCCcEEEEEecCc-cc--eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEec-------------
Confidence 4899999887777766432211 11 123333333332223333333333443333322 11111
Q ss_pred hccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCc
Q 002086 417 QNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496 (969)
Q Consensus 417 ~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v 496 (969)
..+..+-+ .+=+++++..+++.|..-|.|+.|+|||.++||+|.||+|.|||-.+|+.+..+..
T Consensus 167 --sdDn~v~f---------feGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~----- 230 (603)
T KOG0318|consen 167 --SDDNTVAF---------FEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED----- 230 (603)
T ss_pred --cCCCeEEE---------eeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC-----
Confidence 12222222 24566778888999999999999999999999999999999999999988875431
Q ss_pred ccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC
Q 002086 497 HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK 575 (969)
Q Consensus 497 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg 575 (969)
-.+|.+.|++|+|+| +..|+|++.|+
T Consensus 231 -----------------------------------------------------~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 231 -----------------------------------------------------SDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred -----------------------------------------------------CCCccccEEEEEECCCCceEEEecCCc
Confidence 136999999999999 89999999999
Q ss_pred cEEEEECCCCcEEEEeecC----CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCE
Q 002086 576 TVRLWDMETKSCLKLFAHN----DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQN 650 (969)
Q Consensus 576 tV~IWDl~t~~~i~~~~h~----~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~ 650 (969)
+++|||+.+.++++++... +.-..+.| .+..|++.+.+|+|.+++.....+. ...+|...|+++..++++++
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lW---qkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW---QKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEE---eCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence 9999999999999988433 33445556 3689999999999999999887754 46778899999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc------------
Q 002086 651 ALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD------------ 718 (969)
Q Consensus 651 Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~------------ 718 (969)
|++|+.||.|.-|+...+..... ....|...|.+++-+..+ .+++.+.|.++++.+...
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~-------~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg 405 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRL-------AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLG 405 (603)
T ss_pred EEeeccCceEEEEecCCcccccc-------ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecC
Confidence 99999999999999988764322 125688889999888754 788889999999885210
Q ss_pred --c----------eE---------EEEee------cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeE
Q 002086 719 --I----------VH---------KFRGF------RNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAI 771 (969)
Q Consensus 719 --~----------~~---------~~~~~------~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~ 771 (969)
. .. .+..+ .-.-...+++++|++.+++.|+.||.|+||.+........ .
T Consensus 406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee----~ 481 (603)
T KOG0318|consen 406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE----A 481 (603)
T ss_pred CCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce----e
Confidence 0 00 00000 0112235788999999999999999999999986432111 1
Q ss_pred EecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccC
Q 002086 772 ITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERV 851 (969)
Q Consensus 772 ~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~ 851 (969)
.... ..+.....+.||++.+++++...+.+.+|...+......
T Consensus 482 ~~~~-------------------------------------h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~ 524 (603)
T KOG0318|consen 482 KLLE-------------------------------------HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN 524 (603)
T ss_pred eeec-------------------------------------ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc
Confidence 1111 122334556799999999999999999998887766433
Q ss_pred CC-CCCCCccccccCCCCCCccccC
Q 002086 852 PS-PPEEELSLISHDPGISESFTSN 875 (969)
Q Consensus 852 l~-~pee~l~~is~hP~~~~~~~~s 875 (969)
.. -|...+.+++|.|. +..++++
T Consensus 525 ~w~FHtakI~~~aWsP~-n~~vATG 548 (603)
T KOG0318|consen 525 RWAFHTAKINCVAWSPN-NKLVATG 548 (603)
T ss_pred eeeeeeeeEEEEEeCCC-ceEEEec
Confidence 33 38999999999998 4455554
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=282.96 Aligned_cols=281 Identities=15% Similarity=0.274 Sum_probs=234.1
Q ss_pred cCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCC--ccccCCCCcccchHHH
Q 002086 335 VGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGD--KECINPNPLLGDQREQ 412 (969)
Q Consensus 335 ~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd--~~~~~~~~l~~~~~~~ 412 (969)
.|-+.+|..+.++.+...++||+-.+.+..|... .......++.+...+..+.|+|. ..++++..
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~-----~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s-------- 238 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP-----QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS-------- 238 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecC-----CcceeEEEeccccceeeEEEccCCCccceeeec--------
Confidence 5778889999999999999999988877666543 22333345555555556666655 23333331
Q ss_pred HHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCC
Q 002086 413 KEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGN 492 (969)
Q Consensus 413 ~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~ 492 (969)
.++.. ++|.+.+-..++.|.||...|..++|+|+|++|+|++.|.+-++||+.+++.+.
T Consensus 239 -----~Dgtv-----------klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL----- 297 (459)
T KOG0272|consen 239 -----ADGTV-----------KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL----- 297 (459)
T ss_pred -----cCCce-----------eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH-----
Confidence 22222 234566667888999999999999999999999999999999999999765433
Q ss_pred ccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEE
Q 002086 493 LTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSS 571 (969)
Q Consensus 493 ~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sg 571 (969)
...||...|.+++|.+ |.+++||
T Consensus 298 --------------------------------------------------------~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 298 --------------------------------------------------------LQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred --------------------------------------------------------hhcccccccceeEecCCCceeecc
Confidence 3468999999999999 8999999
Q ss_pred eCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEcc-CC
Q 002086 572 SMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTP-DG 648 (969)
Q Consensus 572 s~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fsp-dg 648 (969)
+.|..-+|||++++.++..+ +|..+|.+|+|+| +|..|++|+.|++++|||++....+. +..|.+-|+.|.|+| .|
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCC
Confidence 99999999999999999888 8999999999999 99999999999999999999876554 556778899999999 78
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 649 QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 649 ~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.+|++++.|++++||...+..+.... .+|.+.|.++.+++++ +.+++++.|.+|++|.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~~~~ksL--------aGHe~kV~s~Dis~d~-~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTWSPLKSL--------AGHEGKVISLDISPDS-QAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEEcccCcceeeecCCCcccchhh--------cCCccceEEEEeccCC-ceEEEeccCceeeecc
Confidence 89999999999999999998865443 7899999999999998 8999999999999995
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=294.53 Aligned_cols=211 Identities=27% Similarity=0.531 Sum_probs=190.5
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.......+|.||+++|+.+.|+|+.++|++||+|++||+|.+.+...+-
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V------------------------------- 487 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV------------------------------- 487 (707)
T ss_pred cCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE-------------------------------
Confidence 3344456699999999999999999999999999999999998755433
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
.+.||..+|+++.|+| |-+|+|+|.|++.++|.......++++ +|...
T Consensus 488 ------------------------------~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD 537 (707)
T KOG0263|consen 488 ------------------------------IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD 537 (707)
T ss_pred ------------------------------EecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc
Confidence 5678999999999999 999999999999999999999999988 89999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
|.|+.|+| +.+|+++||.|.+|++||+.+|..+. +.+|..+|.+++|+|+|++|++|+.||.|.|||+.++.++...
T Consensus 538 V~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l- 615 (707)
T KOG0263|consen 538 VDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL- 615 (707)
T ss_pred cceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh-
Confidence 99999999 99999999999999999999987655 5678899999999999999999999999999999998865432
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
.+|.+.|.++.|+.+| ..|++|+.|.+|++||..+..
T Consensus 616 -------~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 616 -------KGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred -------hcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhc
Confidence 7789999999999999 899999999999999965433
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=292.33 Aligned_cols=275 Identities=24% Similarity=0.347 Sum_probs=223.4
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
++.--...++|+.|++|+.+||.|-.|..|++|.+...++.. ++..... ........
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~-lk~~~~l-------~~~d~~sa--------------- 429 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK-LKDASDL-------SNIDTESA--------------- 429 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhcc-ccchhhh-------cccccccc---------------
Confidence 333345679999999999999999999999999998543221 1110000 00000000
Q ss_pred CCCCCCcccccceeeec-CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEE
Q 002086 526 KHSSPDYVHVPETVFSL-SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQF 602 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~-~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~f 602 (969)
.......+. .......+.||+++|+.+.|+| .++|+++|.|++||+|.+.+..++..+ +|..+|+.+.|
T Consensus 430 --------d~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F 501 (707)
T KOG0263|consen 430 --------DVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQF 501 (707)
T ss_pred --------chhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEe
Confidence 000011111 2223346899999999999999 899999999999999999999999888 89999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+| .|-+|++++.|++.++|......... +.+|...|.|+.|+|+..|+++|+.|.+|++||+.++..+..+
T Consensus 502 ~P-~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF------- 573 (707)
T KOG0263|consen 502 AP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF------- 573 (707)
T ss_pred cC-CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-------
Confidence 99 89999999999999999998876655 4567788999999999999999999999999999999876554
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+|..+|++++|+|+| .+|++|+.|+.|.+||+...........|.+.|.++.|+.||..||+|+.|.+|++||+...
T Consensus 574 -~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 574 -TGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred -cCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 7899999999999988 89999999999999998876655555566888999999999999999999999999999864
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=276.23 Aligned_cols=479 Identities=17% Similarity=0.240 Sum_probs=329.3
Q ss_pred eEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeec
Q 002086 315 NKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVK 394 (969)
Q Consensus 315 ~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~ 394 (969)
+++|+.+++.. +-++.||...|+.+.+...+.++++|+.|..+..|+. -.......+++++....-..|.
T Consensus 89 Vqif~~~s~~~-----~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDl-----V~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 89 VQIFSLESEEI-----LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDL-----VGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred EEeeccCCCce-----eeeecccccceEEEEEcccCceEeecCCCccEEEEEe-----ccceeeEEeecchHHHhHHhcc
Confidence 49999998854 5678999999999999999999999999998888852 1111111111111111101011
Q ss_pred CCccccCCCCcccchHHHHHHhhccccCcceEEEc-cCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCC
Q 002086 395 GDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVR-QSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDR 473 (969)
Q Consensus 395 gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~Dg 473 (969)
+.....|.+. .+.-++|+|.+-++..+.-+|++.|+++++.+ +.+++++.|+
T Consensus 159 -------------------------~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~ds 211 (888)
T KOG0306|consen 159 -------------------------NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDS 211 (888)
T ss_pred -------------------------CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCC
Confidence 1111111111 22335779999999999999999999999987 7899999999
Q ss_pred cEEEEeccc----------------ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc-------------cc---
Q 002086 474 VIHVWEVQE----------------CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP-------------EK--- 521 (969)
Q Consensus 474 tVrIWDl~t----------------g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~-------------~~--- 521 (969)
.++||++.. |...+. +....+... ....+......|....... .+
T Consensus 212 e~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq--sk~R~i~l~-~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k 288 (888)
T KOG0306|consen 212 ELKVWELAFEDDEKETNRYISTKLRGTFIRQ--SKGREINLV-TDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLK 288 (888)
T ss_pred ceEEEEeecccccccccccceeeccceeeec--cCCceeEEe-ecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHH
Confidence 999999821 111110 000011000 0000000000000000000 00
Q ss_pred --ccCCC-----------------------------------CCCCC-----cccccceeeecCC--Cc--------eeE
Q 002086 522 --KKKGK-----------------------------------HSSPD-----YVHVPETVFSLSE--KP--------FCS 549 (969)
Q Consensus 522 --~~~~~-----------------------------------~~~~~-----~~~~~~~v~~~~~--k~--------~~~ 549 (969)
++... ..... +.......+.+.. +. ...
T Consensus 289 ~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~ 368 (888)
T KOG0306|consen 289 RAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIE 368 (888)
T ss_pred HhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceee
Confidence 00000 00000 0111111222221 11 146
Q ss_pred eccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE
Q 002086 550 FIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV 629 (969)
Q Consensus 550 l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~ 629 (969)
+.||...|.+++++.++.++..+..+.|+||+..+.+|++++... .+.+..|-| .+.++++|...|.+.+||+....+
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehhhh
Confidence 789999999999999887777788899999999999999999766 899999999 899999999999999999998876
Q ss_pred EEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce-----eeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 630 VDWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL-----HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 630 ~~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~-----~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
+... .|.+.|..++.+||+..+++|+.|.+|++||..--.. .....+ .....-.-...|.|+.++|++ .+|+
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl-~~~rtLel~ddvL~v~~Spdg-k~La 524 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL-KHTRTLELEDDVLCVSVSPDG-KLLA 524 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee-ccceEEeccccEEEEEEcCCC-cEEE
Confidence 6544 5889999999999999999999999999999752111 000000 001112346789999999998 8999
Q ss_pred EEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeee
Q 002086 704 VTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCK 783 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~ 783 (969)
++--|.++.||-+.+....+..++|.-+|.|+.++||+++++||+.|.+|+||-++=+.+... +..+...+.
T Consensus 525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS------~fAHdDSvm-- 596 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS------FFAHDDSVM-- 596 (888)
T ss_pred EEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh------hhcccCcee--
Confidence 999999999999888888888889999999999999999999999999999999986543221 111111111
Q ss_pred eeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCCccccc
Q 002086 784 DVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLIS 863 (969)
Q Consensus 784 ~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is 863 (969)
...|-|...+.++.+.++.+.-|........+++..|..++.+++
T Consensus 597 -----------------------------------~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLa 641 (888)
T KOG0306|consen 597 -----------------------------------SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLA 641 (888)
T ss_pred -----------------------------------EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeE
Confidence 112345666778889999999999888889999999999999999
Q ss_pred cCCCCCCccccC-CCccc
Q 002086 864 HDPGISESFTSN-SSSIR 880 (969)
Q Consensus 864 ~hP~~~~~~~~s-~~~~r 880 (969)
-.|..+=.+++| ++++|
T Consensus 642 v~~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 642 VSPNGSFVVSSSHDKSIR 659 (888)
T ss_pred EcCCCCeEEeccCCceeE
Confidence 888877666666 68888
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=274.15 Aligned_cols=265 Identities=25% Similarity=0.327 Sum_probs=228.5
Q ss_pred eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE---------EecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 002086 591 FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD---------WTDLHEMVTAACYTPDGQNALIGSHKGSCR 661 (969)
Q Consensus 591 ~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~---------~~~~~~~V~sv~fspdg~~Lasgs~dg~I~ 661 (969)
|+....+.|..|+| ++++|++|+.||.|.+|+..+|++.. +.-+..+|.|++|+.|...+++|+.||.|+
T Consensus 210 Fg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 210 FGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred cccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 46677889999999 99999999999999999999987653 344567899999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC
Q 002086 662 LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG 741 (969)
Q Consensus 662 IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg 741 (969)
+|.+.++.+...+ .+.|...|+|+.|+.|+ ..+++++.|.+++|.-+......-....|...|+.+.|++||
T Consensus 289 vWri~tG~ClRrF-------drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 289 VWRIETGQCLRRF-------DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG 360 (508)
T ss_pred EEEEecchHHHHh-------hhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC
Confidence 9999999875432 26899999999999998 789999999999999876655544445677889999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCccCCCce---------eEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccc
Q 002086 742 KYIISASEDSQVYVWKREEHRNASTGKR---------AIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKR 812 (969)
Q Consensus 742 ~~LaSgs~Dg~I~IWdl~t~~~~~t~k~---------~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~ 812 (969)
.++++++.||+|++|+.++.+++.+.++ ++++....+++..++.+..+. .-.-.++.++++.++++
T Consensus 361 ~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~-----imn~qGQvVrsfsSGkR 435 (508)
T KOG0275|consen 361 HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVY-----IMNMQGQVVRSFSSGKR 435 (508)
T ss_pred CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEE-----EEeccceEEeeeccCCc
Confidence 9999999999999999999998887663 455666667765444443332 23447889999999999
Q ss_pred cCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCCccccccCCCCC
Q 002086 813 ISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGIS 869 (969)
Q Consensus 813 ~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~ 869 (969)
+++.++.++.||.|+|+||.++|+++|+|...++.++++++.||++++++.|||.-+
T Consensus 436 EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN 492 (508)
T ss_pred cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence 999999999999999999999999999999999999999999999999999999955
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=282.49 Aligned_cols=286 Identities=23% Similarity=0.401 Sum_probs=241.0
Q ss_pred cceeeeEecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEeccc-ceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQE-CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~t-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
+-+++.++.||+..|+++.|.| .+.+|++||.|+.|+||++.. +.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~--------------------------------- 249 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR--------------------------------- 249 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc---------------------------------
Confidence 3466788999999999999999 899999999999999999864 33
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCC
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY 596 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~ 596 (969)
.+.++.||..+|.+++|++ +..|++++.|+.|++||+++|+++..|.....
T Consensus 250 ----------------------------~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~ 301 (503)
T KOG0282|consen 250 ----------------------------CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKV 301 (503)
T ss_pred ----------------------------eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCC
Confidence 3347889999999999998 99999999999999999999999999999999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
++|+.|+|.+.+.|++|+.|+.|+.||++++++++.+.+ -+.|..+.|-++|..+++.+.|++++||+.+........
T Consensus 302 ~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i- 380 (503)
T KOG0282|consen 302 PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI- 380 (503)
T ss_pred ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhh-
Confidence 999999995559999999999999999999998876654 488999999999999999999999999999877553321
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC-----cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL-----DIVHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-----~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
.........++..+|.+ .++++-+.|..|.++.+. +....+++|...+.-..+.|||||.+|++|+.|
T Consensus 381 ------~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 381 ------ADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred ------cchhhccCcceecCCCC-CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC
Confidence 13445567789999988 789999999999999854 345677888888889999999999999999999
Q ss_pred CcEEEEEcCCCCccCCCc---eeEEecccCCceeeeeeEEeecCCCccc
Q 002086 751 SQVYVWKREEHRNASTGK---RAIITTRNHEHFQCKDVSVAIPWPGMVK 796 (969)
Q Consensus 751 g~I~IWdl~t~~~~~t~k---~~~~~~~~~~~~~~~~~s~~~~w~~~i~ 796 (969)
|.+++||.++-+.+.+.+ ..++....|.+.+ ...+++.|.|.++
T Consensus 454 G~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~--Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 454 GKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP--SKVATCGWDGLIK 500 (503)
T ss_pred ccEEEeechhhhhhhccccCCcceEEEEecCCCc--ceeEecccCceeE
Confidence 999999999976665544 3455555555544 3344555777653
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=274.65 Aligned_cols=285 Identities=19% Similarity=0.303 Sum_probs=234.5
Q ss_pred ceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeC
Q 002086 382 KNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSL 461 (969)
Q Consensus 382 ~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSp 461 (969)
..+++++..+...|+...+..+. ..+. -.+|+...+..-..+++|..+|.+|.|++
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs---------------~SGE---------FtLWNg~~fnFEtilQaHDs~Vr~m~ws~ 148 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGS---------------QSGE---------FTLWNGTSFNFETILQAHDSPVRTMKWSH 148 (464)
T ss_pred cccccceeeEEEcCCCceeEeec---------------cccc---------EEEecCceeeHHHHhhhhcccceeEEEcc
Confidence 44667788887788866644331 1111 12455555555566899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeee
Q 002086 462 DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFS 541 (969)
Q Consensus 462 Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 541 (969)
+|.+++||+.+|.||+|+..-..
T Consensus 149 ~g~wmiSgD~gG~iKyWqpnmnn--------------------------------------------------------- 171 (464)
T KOG0284|consen 149 NGTWMISGDKGGMIKYWQPNMNN--------------------------------------------------------- 171 (464)
T ss_pred CCCEEEEcCCCceEEecccchhh---------------------------------------------------------
Confidence 99999999999999999965211
Q ss_pred cCCCceeEecc-CCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCe
Q 002086 542 LSEKPFCSFIG-HLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAK 618 (969)
Q Consensus 542 ~~~k~~~~l~g-H~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~ 618 (969)
++.+.. |...|.+++|+| +..|++++.||+|+|||....+....+ +|.-.|.+++|+| ...+|++|+.|..
T Consensus 172 -----Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnl 245 (464)
T KOG0284|consen 172 -----VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNL 245 (464)
T ss_pred -----hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCce
Confidence 112333 458999999999 899999999999999999988776655 8999999999999 8999999999999
Q ss_pred EEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 619 VRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 619 I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
|++||.+++.++ .+..|...|..+.|++++++|++++.|..+++||+++.+.+.. .++|...++++.|+|-
T Consensus 246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~--------~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT--------YRGHKKDVTSLTWHPL 317 (464)
T ss_pred eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH--------hhcchhhheeeccccc
Confidence 999999998765 4667889999999999999999999999999999995543322 2789999999999999
Q ss_pred CCceEEEEeCCCcEEEEeCC-cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 698 NPSEVLVTSADSRIRILDGL-DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+.+|.+|+.||.|..|... +.......+.|...|.+++|+|-|.+|++|+.|.++++|.-.-+
T Consensus 318 ~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 318 NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred cccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 98999999999999999966 22223345678889999999999999999999999999987643
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=256.71 Aligned_cols=267 Identities=25% Similarity=0.389 Sum_probs=227.2
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+..+.+|++.|+++.|+|+|.+|||||.|..|.+|++....
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--------------------------------------- 80 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--------------------------------------- 80 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc---------------------------------------
Confidence 44578999999999999999999999999999999975311
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
+.+..+++|.+.|..+.|.+ +..|++++.|++|+.||+++|++++.+ .|...|+++.
T Consensus 81 ---------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~ 139 (338)
T KOG0265|consen 81 ---------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD 139 (338)
T ss_pred ---------------------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC
Confidence 11236779999999999998 899999999999999999999999887 7999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
-......++.+++.|+++++||+++...++.+.....++++.|..++..+++|+-|+.|++||++.+......
T Consensus 140 p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~l------- 212 (338)
T KOG0265|consen 140 PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTL------- 212 (338)
T ss_pred ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEe-------
Confidence 6654456788899999999999999999998888899999999999999999999999999999888765443
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc------ceEEEEeecCCC--CeEEEEEeCCCCEEEEEeCCCcE
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD------IVHKFRGFRNTS--SQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~------~~~~~~~~~~~~--~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
.+|..+|+.+..+|+| .++++-+.|.++++||.+. ++..+.++.|.- ....++|+|++.++..|+.|..+
T Consensus 213 -sGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v 290 (338)
T KOG0265|consen 213 -SGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV 290 (338)
T ss_pred -ecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceE
Confidence 8999999999999998 8999999999999999653 356666665543 34578999999999999999999
Q ss_pred EEEEcCCCCccCCCceeEEecccCCceeeeee
Q 002086 754 YVWKREEHRNASTGKRAIITTRNHEHFQCKDV 785 (969)
Q Consensus 754 ~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~ 785 (969)
++||... .+.++.+..+...+.|.++
T Consensus 291 yvwd~~~------r~~lyklpGh~gsvn~~~F 316 (338)
T KOG0265|consen 291 YVWDTTS------RRILYKLPGHYGSVNEVDF 316 (338)
T ss_pred EEeeccc------ccEEEEcCCcceeEEEeee
Confidence 9999986 3455556555555554333
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-29 Score=280.76 Aligned_cols=451 Identities=16% Similarity=0.203 Sum_probs=288.6
Q ss_pred CCccccccccCccccccccccCCcEEEEeeCCCCcE----------EEEeeccCCCceeEEEecCCCceeeeeehhhccC
Q 002086 267 GNSVRSVRRSGNFASILSSSRLGAFFLIKNLDTGKE----------FIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVG 336 (969)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ld~g~~----------~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~G 336 (969)
+|....++..++....+++...+.+++.|......- .++..++.||. ++|||+..+.. ...+.|
T Consensus 72 ~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~-v~VWdi~~~~~-----th~fkG 145 (775)
T KOG0319|consen 72 PDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGR-VKVWDIKNGYC-----THSFKG 145 (775)
T ss_pred CCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccce-EEEEEeeCCEE-----EEEecC
Confidence 445555565555555555555555555555421111 23344555444 48999999977 468899
Q ss_pred CCcceeeeecccccc--cccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCC------------
Q 002086 337 HSPVVKELMRRENVN--RINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINP------------ 402 (969)
Q Consensus 337 Hs~~V~~l~~~~~~~--~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~------------ 402 (969)
|-+.|.++.|.++.. .++.|..|..+..|.... +..+.+.++.+.+.+.++.|..|...+.+
T Consensus 146 ~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~----~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~ 221 (775)
T KOG0319|consen 146 HGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND----KRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDL 221 (775)
T ss_pred CCceEEEEEeCCccchhheeecCCCceEEEEEccc----CchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeeh
Confidence 999999999766554 477888999888886442 22245555666666666666555332111
Q ss_pred --------CCcccchHHHHHHhhccccCcceEEE---------------------------------------------c
Q 002086 403 --------NPLLGDQREQKEQKQNKNVSNHWVKV---------------------------------------------R 429 (969)
Q Consensus 403 --------~~l~~~~~~~~~~~~~~~~~~~~v~v---------------------------------------------~ 429 (969)
.|+.-.....-..+...+....|+.. .
T Consensus 222 ~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vta 301 (775)
T KOG0319|consen 222 VQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTA 301 (775)
T ss_pred hhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEc
Confidence 11100000000000000000011110 0
Q ss_pred cCCCcccccccceeeeEecccccCEEEEEEe-CCCCEEEEEeCCCcEEEEeccc--ceEEEeecCCccCcccccccCCCC
Q 002086 430 QSGKSYKDLSALHLCQEIQAHEGSIWTIKFS-LDARFLASAGEDRVIHVWEVQE--CEVMSMSEGNLTPIHPSLCNSSDK 506 (969)
Q Consensus 430 ~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fS-pDg~~LaTgs~DgtVrIWDl~t--g~~l~~~~~~~~~v~~~~~~~~~~ 506 (969)
...-.+.|..++++...+-|..+.|..|+|- |+.++||.++..+.+|++++.+ .+++. +|...+..+......
T Consensus 302 eQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~---GH~e~vlSL~~~~~g- 377 (775)
T KOG0319|consen 302 EQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIP---GHTEAVLSLDVWSSG- 377 (775)
T ss_pred cceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEe---CchhheeeeeecccC-
Confidence 0001122334444444455555556665554 2344555555555566665442 22222 111111100000000
Q ss_pred CccCCCCCCCCCcccccCCCCCCCCcccccceeeecC-----CCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEE
Q 002086 507 ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLS-----EKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRL 579 (969)
Q Consensus 507 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~I 579 (969)
.....+.. .....+|.+. ..++....||+..|.+++++. -.+|+++|.|++|++
T Consensus 378 ~llat~sK-------------------D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 378 DLLATGSK-------------------DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred cEEEEecC-------------------CceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 00000000 0001112111 112335678999999999987 579999999999999
Q ss_pred EECCCCcE----EEE------eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCC
Q 002086 580 WDMETKSC----LKL------FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDG 648 (969)
Q Consensus 580 WDl~t~~~----i~~------~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg 648 (969)
|++...+. +.. ..|...|+|++++| ++.+|+|||.|.+.+||++....+. .+.+|...|.++.|++..
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d 517 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKND 517 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEecccc
Confidence 99976221 111 16999999999999 9999999999999999999977655 466788999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecC
Q 002086 649 QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRN 728 (969)
Q Consensus 649 ~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~ 728 (969)
+.+++++.|++|+||.+.+..+...+ .+|...|..+.|-.++ ..|++++.||-|++|+..+..+....-.|
T Consensus 518 q~laT~SgD~TvKIW~is~fSClkT~--------eGH~~aVlra~F~~~~-~qliS~~adGliKlWnikt~eC~~tlD~H 588 (775)
T KOG0319|consen 518 QLLATCSGDKTVKIWSISTFSCLKTF--------EGHTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNECEMTLDAH 588 (775)
T ss_pred ceeEeccCCceEEEEEeccceeeeee--------cCccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence 99999999999999999999887654 7899999999999887 89999999999999998877777677778
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 729 TSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 729 ~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
...|.+++.++.+.+++||+.||.|.+|.=.+
T Consensus 589 ~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 589 NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 88899999999999999999999999998554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=250.35 Aligned_cols=289 Identities=17% Similarity=0.281 Sum_probs=229.9
Q ss_pred hhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHH
Q 002086 332 EKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQRE 411 (969)
Q Consensus 332 ~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~ 411 (969)
+.+.||...|.++.+..+...+++++-|+.+..|+.-. ..+.+-+.-...-+...+|.|....++.+.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~T-----tnK~haipl~s~WVMtCA~sPSg~~VAcGG------- 116 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFT-----TNKVHAIPLPSSWVMTCAYSPSGNFVACGG------- 116 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccc-----ccceeEEecCceeEEEEEECCCCCeEEecC-------
Confidence 45689999999999999999999999999888776332 111222222223344444555543322221
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecC
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEG 491 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~ 491 (969)
-+-..-||.-...+ .-......++|.+|++-+.|+.|-+|+ .|+|++.|.++.+||+++|+.+.
T Consensus 117 --------LdN~Csiy~ls~~d---~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~---- 180 (343)
T KOG0286|consen 117 --------LDNKCSIYPLSTRD---AEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQ---- 180 (343)
T ss_pred --------cCceeEEEeccccc---ccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEE----
Confidence 11112233222110 011224567899999999999999854 79999999999999999988765
Q ss_pred CccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEE
Q 002086 492 NLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLL 569 (969)
Q Consensus 492 ~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~ 569 (969)
.|.||.+.|.++.++| .+.|+
T Consensus 181 ---------------------------------------------------------~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 181 ---------------------------------------------------------VFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred ---------------------------------------------------------EecCCcccEEEEecCCCCCCeEE
Confidence 6779999999999999 68999
Q ss_pred EEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC---CCEEEEEEc
Q 002086 570 SSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACYT 645 (969)
Q Consensus 570 Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~---~~V~sv~fs 645 (969)
+|+.|++.+|||++.+.+.++| +|...|++|.|.| ++.-|++|+.|++.++||++..+.+..+.+. ..|++++|+
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred ecccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 9999999999999999999998 8999999999999 9999999999999999999998777666654 579999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 646 PDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 646 pdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
..|++|++|..|.++.+||.-.++..... .+|...|+++..+|+| .-+++|+.|.+++||.
T Consensus 283 ~SGRlLfagy~d~~c~vWDtlk~e~vg~L--------~GHeNRvScl~~s~DG-~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 283 KSGRLLFAGYDDFTCNVWDTLKGERVGVL--------AGHENRVSCLGVSPDG-MAVATGSWDSTLRIWA 343 (343)
T ss_pred ccccEEEeeecCCceeEeeccccceEEEe--------eccCCeeEEEEECCCC-cEEEecchhHheeecC
Confidence 99999999999999999999877654332 7899999999999999 8999999999999994
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=253.04 Aligned_cols=249 Identities=21% Similarity=0.344 Sum_probs=216.8
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.+++|.++|..+.|.+|++.|+++|.|++|+.||+++|+.+.
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r-------------------------------------- 126 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR-------------------------------------- 126 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee--------------------------------------
Confidence 367999999999999999999999999999999999988765
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEe
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFN 603 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fs 603 (969)
.+++|..-|..+.-+. -.++.+|+.|++++|||+++..+++++....+++++.|.
T Consensus 127 -----------------------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~ 183 (338)
T KOG0265|consen 127 -----------------------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFK 183 (338)
T ss_pred -----------------------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEec
Confidence 4567888888888554 368889999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 604 PMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 604 p~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
. ....+++|+-|+.|++||++.+... .+.+|.+.|+.+..+++|.++++-+.|.++++||++.....+....-+....
T Consensus 184 d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 184 D-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred c-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 8 8899999999999999999887655 5667889999999999999999999999999999987654332111123333
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
.........++|+|++ ..+.+|+.|..+++||.......+....|.+.|+++.|+|...+|.+++.|.+|++=.
T Consensus 263 hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred hhhhhhcceeeccCCC-CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 4445667788999988 8999999999999999888788888888999999999999999999999999999743
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-29 Score=261.63 Aligned_cols=274 Identities=25% Similarity=0.399 Sum_probs=236.6
Q ss_pred cceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
...+.+.+.+|..+|+.+-|+|+-.++++++.|++|++||..+|++..
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~-------------------------------- 144 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER-------------------------------- 144 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh--------------------------------
Confidence 344566788999999999999999999999999999999999887643
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC-CcEEEEe-ecCCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET-KSCLKLF-AHNDY 596 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t-~~~i~~~-~h~~~ 596 (969)
.++||++.|.+|.|+. +.+|++++.|-.+++||..+ .+|++.. +|...
T Consensus 145 -----------------------------~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~ 195 (406)
T KOG0295|consen 145 -----------------------------SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHG 195 (406)
T ss_pred -----------------------------hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccc
Confidence 5789999999999998 99999999999999999987 4565554 99999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
|.+++|-| .+++|++++.|.+|+.|++.++.++. +.+|...|..+..+.||..+++++.|.++++|-+.+.++...
T Consensus 196 vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~-- 272 (406)
T KOG0295|consen 196 VSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE-- 272 (406)
T ss_pred eeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh--
Confidence 99999999 88999999999999999999998765 556778999999999999999999999999999998865433
Q ss_pred eeecccccCCCCCeEEEEEcCC--------------CCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC
Q 002086 676 VDFQTKKKSSTRKITGFQFSPS--------------NPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG 741 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd--------------~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg 741 (969)
...|..+|-+++|.|. +..++.+++.|++|++||+..+.+.+....|...|..++|+|.|
T Consensus 273 ------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G 346 (406)
T KOG0295|consen 273 ------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG 346 (406)
T ss_pred ------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC
Confidence 2778899999999873 23589999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCce-eeeeeEEeec
Q 002086 742 KYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF-QCKDVSVAIP 790 (969)
Q Consensus 742 ~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~-~~~~~s~~~~ 790 (969)
+||+++.+|+++++||+++.++.. ....|++| +|.++-...+
T Consensus 347 kyi~ScaDDktlrvwdl~~~~cmk-------~~~ah~hfvt~lDfh~~~p 389 (406)
T KOG0295|consen 347 KYILSCADDKTLRVWDLKNLQCMK-------TLEAHEHFVTSLDFHKTAP 389 (406)
T ss_pred eEEEEEecCCcEEEEEeccceeee-------ccCCCcceeEEEecCCCCc
Confidence 999999999999999999854433 33366666 4555555443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=258.55 Aligned_cols=241 Identities=22% Similarity=0.401 Sum_probs=212.4
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
...|++|+|+.+|.+||||+.||.++||+.... +
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l--------------------------------------------- 268 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-L--------------------------------------------- 268 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch-h---------------------------------------------
Confidence 457999999999999999999999999997532 1
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCC
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDD 608 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~ 608 (969)
+.+|..|.++|.++.|+. +.+|++++.|+++.|||..++.....|. |..+-..|.|- +..
T Consensus 269 ----------------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~ 330 (524)
T KOG0273|consen 269 ----------------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SND 330 (524)
T ss_pred ----------------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCc
Confidence 125667999999999998 9999999999999999999999999884 66665889997 588
Q ss_pred EEEEEECCCeEEEEeCCCce-EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 609 YFISGSLDAKVRIWSISDRL-VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~-~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
.|++++.|+.|+|+.+.... +..+.+|++.|.++.|+|.|.+|++++.|++++||.+....... ....|..
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~--------~l~~Hsk 402 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH--------DLQAHSK 402 (524)
T ss_pred eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh--------hhhhhcc
Confidence 99999999999999997654 55677899999999999999999999999999999987665432 2377899
Q ss_pred CeEEEEEcCCCC--------ceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 688 KITGFQFSPSNP--------SEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 688 ~It~l~fspd~~--------~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.|+.+.|+|.++ ..+++++.|++|++||....++......|..+|.+++|+|+|+|||+|+.||.|.||+.+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 999999999763 478999999999999999988888888899999999999999999999999999999999
Q ss_pred CCCc
Q 002086 760 EHRN 763 (969)
Q Consensus 760 t~~~ 763 (969)
+++.
T Consensus 483 ~~~l 486 (524)
T KOG0273|consen 483 TGKL 486 (524)
T ss_pred chhe
Confidence 8443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=272.79 Aligned_cols=278 Identities=22% Similarity=0.309 Sum_probs=235.6
Q ss_pred cCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCC-CcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCC
Q 002086 542 LSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMET-KSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDA 617 (969)
Q Consensus 542 ~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t-~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg 617 (969)
+..+.+..+.||+..|.++.|.| +.+|++++.|+.|+||++-. +.|+++| +|..+|..++|++ ++..|++++.|+
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDR 280 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecce
Confidence 45566789999999999999999 78999999999999999977 8899988 8999999999999 999999999999
Q ss_pred eEEEEeCCCceEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 618 KVRIWSISDRLVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 618 ~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.|++||+++|++...+.....++|+.|+|++ +.|++|+.|+.|+.||++++++++. ...|.+.|..+.|-+
T Consensus 281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe--------Yd~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE--------YDRHLGAILDITFVD 352 (503)
T ss_pred eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH--------HHhhhhheeeeEEcc
Confidence 9999999999999999999999999999998 7899999999999999999986543 367889999999999
Q ss_pred CCCceEEEEeCCCcEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecc
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTR 775 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~ 775 (969)
.+ ..+++++.|++++||+..... ..+....+.....+|..+|+++++++-+.|+.|.||.+..+-.....+
T Consensus 353 ~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK------- 424 (503)
T KOG0282|consen 353 EG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK------- 424 (503)
T ss_pred CC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh-------
Confidence 88 899999999999999966433 223333334456689999999999999999999999977532111110
Q ss_pred cCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCC
Q 002086 776 NHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPP 855 (969)
Q Consensus 776 ~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~p 855 (969)
-.+.. ...+-..-+.|||+|.++.++..++.++.|..++-++...+..|
T Consensus 425 ~feGh-------------------------------~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 425 RFEGH-------------------------------SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred hhcce-------------------------------eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence 01111 01122334568999999999999999999999999999999999
Q ss_pred CCCccccccCCC
Q 002086 856 EEELSLISHDPG 867 (969)
Q Consensus 856 ee~l~~is~hP~ 867 (969)
.+.++++.|||.
T Consensus 474 ~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 474 DQPCIGVDWHPV 485 (503)
T ss_pred CcceEEEEecCC
Confidence 999999999999
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-28 Score=253.65 Aligned_cols=288 Identities=18% Similarity=0.350 Sum_probs=235.7
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.++.+.+++|.+.|.|+++.|..++|+||+.|++|+|||+.+|++..++.++...+..+.+...-......+..
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged------ 214 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED------ 214 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC------
Confidence 46678899999999999999999999999999999999999999999988887776665554432221111110
Q ss_pred cccCCCCCCCCcccccceeeecC-CCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCe
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLS-EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYV 597 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~-~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V 597 (969)
...+.|++. .+.+..+.||-..|+|++.+| .+.|++|+.|.+++|||+++...+.++ +|..+|
T Consensus 215 --------------k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V 280 (460)
T KOG0285|consen 215 --------------KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV 280 (460)
T ss_pred --------------CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc
Confidence 112344443 355678899999999999999 899999999999999999999998888 799999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceE-EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLV-VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV 676 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~ 676 (969)
..+.+.| .+..+++|+.|++|++||++.++. .....|...|.+++.+|....|++++.| .|+-|++..+.....
T Consensus 281 ~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n--- 355 (460)
T KOG0285|consen 281 ASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN--- 355 (460)
T ss_pred eeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhc---
Confidence 9999999 778899999999999999998865 4566777889999999999888888866 689999988875433
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE--EE---E---eecCCCCeEEEEEeCCCCEEEEEe
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH--KF---R---GFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~--~~---~---~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
..+|..-|.++..+.|+ ++++|+.+|.|.+||-..... .. . .......|.+.+|...|..|+||.
T Consensus 356 -----lsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e 428 (460)
T KOG0285|consen 356 -----LSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE 428 (460)
T ss_pred -----cccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc
Confidence 37888999999999886 999999999999999543221 11 1 122345688999999999999999
Q ss_pred CCCcEEEEEcCC
Q 002086 749 EDSQVYVWKREE 760 (969)
Q Consensus 749 ~Dg~I~IWdl~t 760 (969)
.|.+|++|.-++
T Consensus 429 adKtIk~~keDe 440 (460)
T KOG0285|consen 429 ADKTIKMYKEDE 440 (460)
T ss_pred CCcceEEEeccc
Confidence 999999998765
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=237.81 Aligned_cols=245 Identities=25% Similarity=0.489 Sum_probs=215.3
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
.+..|..|+++|.++.|+-||+|.+|||.|++|++|+...|.+++
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik----------------------------------- 53 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK----------------------------------- 53 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-----------------------------------
Confidence 355688999999999999999999999999999999998777665
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCI 600 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv 600 (969)
++.||..+|.+++.+. +..|++|+.|+.|.+||+.+|+.++.+ +|.+.|+.+
T Consensus 54 --------------------------tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV 107 (307)
T KOG0316|consen 54 --------------------------TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTV 107 (307)
T ss_pred --------------------------eecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEE
Confidence 6778999999999886 789999999999999999999999988 899999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCc--eEEEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDR--LVVDWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
+|+. +...+++|+.|.+|++||-++. ++++.+ ...+.|.++.+. +..|++|+.||+++.||++.+.+..
T Consensus 108 ~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s----- 179 (307)
T KOG0316|consen 108 RFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS----- 179 (307)
T ss_pred EecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh-----
Confidence 9998 8889999999999999999875 344443 345778888876 5689999999999999999987642
Q ss_pred ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC--CcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG--LDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~--~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
.....+|+++.|++++ +..++++.|++|++.|- .+....+++|.+...-..++++.....+++|++||.|++
T Consensus 180 -----Dy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~ 253 (307)
T KOG0316|consen 180 -----DYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF 253 (307)
T ss_pred -----hhcCCcceeEEecCCC-CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEE
Confidence 3346789999999998 89999999999999994 456778889988888889999998999999999999999
Q ss_pred EEcCCCC
Q 002086 756 WKREEHR 762 (969)
Q Consensus 756 Wdl~t~~ 762 (969)
||+.+..
T Consensus 254 wdLvd~~ 260 (307)
T KOG0316|consen 254 WDLVDET 260 (307)
T ss_pred EEeccce
Confidence 9998743
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-28 Score=254.43 Aligned_cols=252 Identities=22% Similarity=0.407 Sum_probs=224.1
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
|+.++++...|+||+++|..|.|+..|++|||++.|=.+++||.++..
T Consensus 136 D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~-------------------------------- 183 (406)
T KOG0295|consen 136 DTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF-------------------------------- 183 (406)
T ss_pred EccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH--------------------------------
Confidence 666777788899999999999999999999999999999999987521
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHN 594 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~ 594 (969)
..+..+.+|...|.++.|-| ++++++++.|.+|+.|++.++.|+++| +|.
T Consensus 184 ----------------------------~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ 235 (406)
T KOG0295|consen 184 ----------------------------RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS 235 (406)
T ss_pred ----------------------------HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch
Confidence 11225678999999999999 999999999999999999999999999 899
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccC---------------CCEEEEEeCCC
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPD---------------GQNALIGSHKG 658 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspd---------------g~~Lasgs~dg 658 (969)
..|..++.+. ++.++++++.|.+|++|-+.++++. .+..|..+|.|++|.|. ++++++++.|+
T Consensus 236 ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 236 EWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred HhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 9999999998 9999999999999999999998654 35567788999999772 35899999999
Q ss_pred cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe
Q 002086 659 SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN 738 (969)
Q Consensus 659 ~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs 738 (969)
+|++||+.++.++... .+|...|..++|+|.| ++|+++..|+++++||..+..+......|..-++++.|+
T Consensus 315 tIk~wdv~tg~cL~tL--------~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTL--------VGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred eEEEEeccCCeEEEEE--------ecccceeeeeEEcCCC-eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC
Confidence 9999999999876443 7899999999999987 899999999999999988877766666778889999999
Q ss_pred CCCCEEEEEeCCCcEEEEEc
Q 002086 739 ADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 739 pdg~~LaSgs~Dg~I~IWdl 758 (969)
.+..|++||+-|..+++|..
T Consensus 386 ~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCceEEeccccceeeeeec
Confidence 99999999999999999974
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=245.76 Aligned_cols=284 Identities=26% Similarity=0.460 Sum_probs=223.1
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+++|++|.+.|++++|+|++++|++++.||.|++|++.+++.......+...+..+.+..........+.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------- 71 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---------- 71 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC----------
Confidence 3567899999999999999999999999999999999988766665555444433333332211111110
Q ss_pred CCCCCCCCcccccceeeecCC-CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEE
Q 002086 524 KGKHSSPDYVHVPETVFSLSE-KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCI 600 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~-k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv 600 (969)
.....+|.... +....+..|...|.++.|++ +.++++++.|+.|++||+.+++....+ .|...|.++
T Consensus 72 ----------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 72 ----------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred ----------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 11123344433 46667888999999999998 577888888999999999988887777 588999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
+|+| ++.++++++.|+.|++||++.++... +..+...+.+++|+|+++.+++++.++.|++||+..++.....
T Consensus 142 ~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~----- 215 (289)
T cd00200 142 AFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL----- 215 (289)
T ss_pred EEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch-----
Confidence 9999 78888888889999999999776554 4455568999999999999999999999999999886654332
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
..+...+.++.|+|++ .++++++.|+.|++|+............+...+.+++|++++.+|++++.||.|++|+
T Consensus 216 ---~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 ---RGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ---hhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 3567799999999985 6777777799999999875444444445667899999999999999999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=254.16 Aligned_cols=289 Identities=26% Similarity=0.437 Sum_probs=240.8
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+..+.|+.|++.|+-+.||++|+||||++.|.+..||++.....+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~----------------------------------- 259 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF----------------------------------- 259 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce-----------------------------------
Confidence 345678999999999999999999999999999999998632211
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecC--CCeE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHN--DYVT 598 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~--~~V~ 598 (969)
+..+++.||..+|..+.|+| +.+|++++.|..+.+||+.+|.+...+++. ..+.
T Consensus 260 -----------------------kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~ 316 (519)
T KOG0293|consen 260 -----------------------KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVS 316 (519)
T ss_pred -----------------------eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcc
Confidence 22447889999999999999 899999999999999999999999998655 8999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~-~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
+++|.| ++..|++|+.|++|..||+.....-.+.+.. ..|.++++.+||+++++.+.|..|++|+..+.....
T Consensus 317 sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~----- 390 (519)
T KOG0293|consen 317 SCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG----- 390 (519)
T ss_pred eeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----
Confidence 999999 9999999999999999999988777666655 459999999999999999999999999987654322
Q ss_pred ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVY 754 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~ 754 (969)
......+|++++.+.++ .++++.-.+..|++||..+ ...++.++.....+..-||-- +..++++|++|+.|+
T Consensus 391 ----lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 391 ----LISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVY 465 (519)
T ss_pred ----cccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEE
Confidence 13456789999999998 7888999999999999775 456677777777788888865 558999999999999
Q ss_pred EEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEE
Q 002086 755 VWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQ 805 (969)
Q Consensus 755 IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~ 805 (969)
||+..+ ++.+..+..+...+.|+.|....+.....+|+++.+.+|
T Consensus 466 IWhr~s------gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 466 IWHRIS------GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred EEEccC------CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 999998 677777777777777766665554444445566666666
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=250.11 Aligned_cols=245 Identities=20% Similarity=0.354 Sum_probs=214.2
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
++.+|.-|.++|++|+|+.+|+||++++.|+++.|||..+|+...
T Consensus 268 l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q----------------------------------- 312 (524)
T KOG0273|consen 268 LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ----------------------------------- 312 (524)
T ss_pred hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE-----------------------------------
Confidence 345577899999999999999999999999999999998887765
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
.+.-|..+-.+|.|-.+..|++++.|+.|+|+.+....++.++ +|.+.|.+|.
T Consensus 313 --------------------------~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 313 --------------------------QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred --------------------------eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 3334666667889988899999999999999999998888877 8999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCc-eEEEEecCCCCEEEEEEccCC---------CEEEEEeCCCcEEEEEcCCCcee
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDR-LVVDWTDLHEMVTAACYTPDG---------QNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg---------~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
|+| .+.+|++++.|++++||.+... ....+..|...|..+.|+|.| ..+++++.|++|++||+..+.+.
T Consensus 367 ~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i 445 (524)
T KOG0273|consen 367 WNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI 445 (524)
T ss_pred ECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence 999 9999999999999999997655 455677788899999999964 57899999999999999999876
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
..+ ..|..+|++++|+|++ .++++|+.||.|.||+..... .++.......|..++|+.+|.+|..+-.|+
T Consensus 446 ~~f--------~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~-l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 446 HTL--------MKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK-LVKSYQGTGGIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred Eee--------ccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh-eeEeecCCCeEEEEEEcCCCCEEEEEecCC
Confidence 542 6899999999999998 899999999999999965433 345555677799999999999999999999
Q ss_pred cEEEEEcC
Q 002086 752 QVYVWKRE 759 (969)
Q Consensus 752 ~I~IWdl~ 759 (969)
.+++-|+.
T Consensus 516 ~vcvldlr 523 (524)
T KOG0273|consen 516 SVCVLDLR 523 (524)
T ss_pred CceEEEec
Confidence 99999875
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=270.85 Aligned_cols=246 Identities=23% Similarity=0.414 Sum_probs=208.1
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecc-cceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQ-ECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~-tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+++.+|...|.+++|+||+++|++|+.|++|+|||+. .+..+
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~----------------------------------- 239 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL----------------------------------- 239 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE-----------------------------------
Confidence 566678999999999999999999999999999999993 33333
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~s 599 (969)
.++.+|...|++++|+| ++++++|+.|++|+|||+.+++++..+ +|.+.|++
T Consensus 240 --------------------------~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 240 --------------------------KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred --------------------------EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 37889999999999999 889999999999999999999999888 89999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceE--E-EEecCCC--CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLV--V-DWTDLHE--MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--~-~~~~~~~--~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
++|++ ++++|++++.|+.|+|||+.++.. + ....+.. .+++++|+|++.++++++.|+.+++||+..+......
T Consensus 294 ~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 294 LAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred EEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 99999 999999999999999999999983 3 3334433 5899999999999999999999999999988765443
Q ss_pred eeeecccccCCCC---CeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecC-CCCeEEEEEeCCCCEEEEEe--
Q 002086 675 QVDFQTKKKSSTR---KITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRN-TSSQISAAFNADGKYIISAS-- 748 (969)
Q Consensus 675 ~~~~~~~~~~h~~---~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~-~~~V~sl~fspdg~~LaSgs-- 748 (969)
..|.. .+.+..+++.+ .++++|+.|+.|++|+............| ...+..+.++|...++++++
T Consensus 373 --------~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~ 443 (456)
T KOG0266|consen 373 --------TGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFE 443 (456)
T ss_pred --------cccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcC
Confidence 23333 33444455655 89999999999999997765444444444 77889999999999999998
Q ss_pred CCCcEEEEEcC
Q 002086 749 EDSQVYVWKRE 759 (969)
Q Consensus 749 ~Dg~I~IWdl~ 759 (969)
.|+.|++|..+
T Consensus 444 ~d~~~~~w~~~ 454 (456)
T KOG0266|consen 444 GDGLIRLWKYD 454 (456)
T ss_pred CCceEEEecCC
Confidence 68999999865
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=234.54 Aligned_cols=283 Identities=18% Similarity=0.353 Sum_probs=217.8
Q ss_pred ceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccc---eEEEe-ecCCccCcccccccCCCCCcc---CCC
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQEC---EVMSM-SEGNLTPIHPSLCNSSDKASS---LDG 512 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg---~~l~~-~~~~~~~v~~~~~~~~~~~~~---~~g 512 (969)
+-+++.+++|.+.|+.++|+|- |..|||||.|+.||||+...+ .+... .+++...+..+.+.+....+. ++.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999998 899999999999999999842 22222 234555555555554433221 111
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc---EE
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS---CL 588 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~---~i 588 (969)
....+... ...-+.+..+.||...|.|++|++ +.+|++++.|+.|-||.+..+. |+
T Consensus 84 t~~Iw~k~--------------------~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 84 TVVIWKKE--------------------DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred eEEEeecC--------------------CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence 11111100 012244668999999999999999 9999999999999999998554 55
Q ss_pred EEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002086 589 KLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLY 663 (969)
Q Consensus 589 ~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~Iw 663 (969)
.++ .|...|..+.|+| ...+|++++.|.+|++|+-..+ .+..+.+|...|.+++|++.|..|++++.|++++||
T Consensus 144 aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred eeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEee
Confidence 555 8999999999999 8999999999999999987733 245566777899999999999999999999999999
Q ss_pred EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc------eEEE-EeecCCCCeEEEE
Q 002086 664 SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI------VHKF-RGFRNTSSQISAA 736 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~------~~~~-~~~~~~~~V~sl~ 736 (969)
-....-. ..|...++.+.|. + ..|++++.|+.|++|..... .... ....|...|+++.
T Consensus 223 ~~~~~~~------------~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~ 287 (312)
T KOG0645|consen 223 RLYTDLS------------GMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQ 287 (312)
T ss_pred eeccCcc------------hhcccceEeeeec-c--cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEE
Confidence 8653211 4577889999999 3 48999999999999973321 1111 2345677899999
Q ss_pred EeCC-CCEEEEEeCCCcEEEEEcC
Q 002086 737 FNAD-GKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 737 fspd-g~~LaSgs~Dg~I~IWdl~ 759 (969)
|.|. ..+|++|+.||.|++|.+.
T Consensus 288 w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 288 WNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EcCCCCCceeecCCCceEEEEEec
Confidence 9994 6899999999999999975
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=228.72 Aligned_cols=290 Identities=12% Similarity=0.209 Sum_probs=223.6
Q ss_pred ccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEE
Q 002086 349 NVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKV 428 (969)
Q Consensus 349 ~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v 428 (969)
.+..+++++=|.++.+|.- ..+++...++.-.+.+..+.+.++...++.. +-..+.+|+
T Consensus 9 ~~viLvsA~YDhTIRfWqa-----~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa----------------~~qhvRlyD 67 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQA-----LTGICSRTIQHPDSQVNRLEITPDKKDLAAA----------------GNQHVRLYD 67 (311)
T ss_pred CceEEEeccCcceeeeeeh-----hcCeEEEEEecCccceeeEEEcCCcchhhhc----------------cCCeeEEEE
Confidence 4566888889998888762 2333333333334667777777777654432 333444443
Q ss_pred ccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCc
Q 002086 429 RQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKAS 508 (969)
Q Consensus 429 ~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~ 508 (969)
-..+. ...+.++.+|++.|+++.|..||++++|||+||++||||+....+.
T Consensus 68 ~~S~n-------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q---------------------- 118 (311)
T KOG0315|consen 68 LNSNN-------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ---------------------- 118 (311)
T ss_pred ccCCC-------CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc----------------------
Confidence 33322 1357889999999999999999999999999999999999853221
Q ss_pred cCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE
Q 002086 509 SLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC 587 (969)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~ 587 (969)
....|..+|+++..+| ...|++|..+|.|++||+.+..|
T Consensus 119 ----------------------------------------R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 119 ----------------------------------------RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred ----------------------------------------hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence 2234779999999999 67999999999999999999887
Q ss_pred EEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-------EEEEecCCCCEEEEEEccCCCEEEEEeCCC
Q 002086 588 LKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-------VVDWTDLHEMVTAACYTPDGQNALIGSHKG 658 (969)
Q Consensus 588 i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-------~~~~~~~~~~V~sv~fspdg~~Lasgs~dg 658 (969)
...+ .....|.++...| ++.+++.+...|..++|++-+.. +.++..|..-+..+.|+|++++|++++.|.
T Consensus 159 ~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk 237 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK 237 (311)
T ss_pred ccccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc
Confidence 7665 4567899999999 99999999999999999997643 234667888899999999999999999999
Q ss_pred cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEE
Q 002086 659 SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAF 737 (969)
Q Consensus 659 ~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~f 737 (969)
+++||++++. +... ....+|...+..++|+.++ .+|++++.|+.+++|++...........|.....|++.
T Consensus 238 tv~iwn~~~~-~kle------~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 238 TVKIWNTDDF-FKLE------LVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred eEEEEecCCc-eeeE------EEeecCCceEEeeeeccCc-cEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 9999999987 2222 2237888999999999998 89999999999999997765544443444444555554
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=256.30 Aligned_cols=283 Identities=20% Similarity=0.340 Sum_probs=225.9
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
-++.||...|.+++||.|...++||+ .+.|+||+..+.++++++.... +....+.+.+........ .
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y--~l~~~Fvpgd~~Iv~G~k----------~ 433 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGY--ILASKFVPGDRYIVLGTK----------N 433 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecccc--EEEEEecCCCceEEEecc----------C
Confidence 35789999999999999988888876 5679999999999998766441 111112222211111111 0
Q ss_pred CCCCCCCcccccceeeecC-CCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC-----C---cEE-----E
Q 002086 525 GKHSSPDYVHVPETVFSLS-EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET-----K---SCL-----K 589 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~-~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t-----~---~~i-----~ 589 (969)
+ ...+|++. ...+.....|.+.|+.++.+| +..+++||.|++|++||..- + +.+ +
T Consensus 434 G----------el~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 434 G----------ELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred C----------ceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 1 11223322 222335678999999999999 88999999999999999742 1 111 2
Q ss_pred EeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 590 LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 590 ~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
++.....|.|+.++| ++.+|+++-.|.+|+||-+.+-+ .+.+++|.-+|.|+.++||++.+++|+.|.+|+||-+.-+
T Consensus 504 tLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG 582 (888)
T ss_pred EEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc
Confidence 346678999999999 99999999999999999999876 5678999999999999999999999999999999999988
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
.+.... .+|...|.++.|.|.. ..+++++.|+.|+-||..+.........|...|.+++.+|+|.|+++++
T Consensus 583 DCHKS~--------fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 583 DCHKSF--------FAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred hhhhhh--------hcccCceeEEEEcccc-eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 875443 6899999999999976 8999999999999999877766666677788899999999999999999
Q ss_pred CCCcEEEEEcCC
Q 002086 749 EDSQVYVWKREE 760 (969)
Q Consensus 749 ~Dg~I~IWdl~t 760 (969)
.|.+|++|.-..
T Consensus 654 hD~sIRlwE~td 665 (888)
T KOG0306|consen 654 HDKSIRLWERTD 665 (888)
T ss_pred CCceeEeeeccC
Confidence 999999999765
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=265.69 Aligned_cols=251 Identities=31% Similarity=0.532 Sum_probs=207.2
Q ss_pred eeEeccc-ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 444 CQEIQAH-EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 444 ~~~L~gH-~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
.+.+.+| ...|+++.|+++|++|++++.|+.+++|+...++.
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------------------------------------- 193 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------------------------------------- 193 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------------------------
Confidence 3445455 88999999999999999999999999999854331
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEEC-CCCcEEEEe-ecCCCeEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDM-ETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl-~t~~~i~~~-~h~~~V~s 599 (969)
.....+.+|...|.+++|++ +.++++++.|++|+|||+ ..+.+++++ +|...|++
T Consensus 194 ----------------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~ 251 (456)
T KOG0266|consen 194 ----------------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTS 251 (456)
T ss_pred ----------------------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEE
Confidence 01124578999999999999 789999999999999999 555788887 99999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee--eeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH--QLNQV 676 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~--~~~~~ 676 (969)
++|+| .++++++|+.|++|+|||+++++++. +..|...|++++|++++.+|++++.|+.|+|||+.++... ...
T Consensus 252 ~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-- 328 (456)
T KOG0266|consen 252 VAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL-- 328 (456)
T ss_pred EEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecc--
Confidence 99999 77999999999999999999987665 5667789999999999999999999999999999999843 111
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--EEEEeecCC-CCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--HKFRGFRNT-SSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~~~~-~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
....... .+++++|+|++ .++++++.|+.+++||+.... ..+.++... ..+.+..+++.+.++++|+.|+.|
T Consensus 329 ---~~~~~~~-~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 329 ---SGAENSA-PVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred ---cCCCCCC-ceeEEEECCCC-cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceE
Confidence 1111222 69999999988 899999999999999977543 344444333 234455667899999999999999
Q ss_pred EEEEcCCC
Q 002086 754 YVWKREEH 761 (969)
Q Consensus 754 ~IWdl~t~ 761 (969)
++|++.+.
T Consensus 404 ~~~~~~s~ 411 (456)
T KOG0266|consen 404 YVWDSSSG 411 (456)
T ss_pred EEEeCCcc
Confidence 99999974
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=279.76 Aligned_cols=253 Identities=18% Similarity=0.338 Sum_probs=202.8
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.+.+|.+.|++++|+|+|++||||+.|++|+||++....... .
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~----~--------------------------------- 520 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG----R--------------------------------- 520 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc----c---------------------------------
Confidence 355699999999999999999999999999999975311000 0
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQF 602 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~f 602 (969)
....+...+. +...|.+++|++ +.+|++++.||+|+|||+.+++.+..+ +|...|++++|
T Consensus 521 ----------------~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~ 583 (793)
T PLN00181 521 ----------------DIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDY 583 (793)
T ss_pred ----------------ccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEE
Confidence 0000111222 346789999987 689999999999999999999888777 89999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYT-PDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fs-pdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+|.++.+|++|+.||+|++||++++..+........+.++.|+ ++|.+|++|+.||.|++||++...... ..
T Consensus 584 ~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~-------~~ 656 (793)
T PLN00181 584 SSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL-------CT 656 (793)
T ss_pred cCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccc-------eE
Confidence 9757889999999999999999998877766666789999995 578999999999999999998764211 11
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
..+|...|.++.|.+ + ..|++++.|++|+|||.... ........|...+..++|++++.+|++|+.|+.|+|
T Consensus 657 ~~~h~~~V~~v~f~~-~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~i 734 (793)
T PLN00181 657 MIGHSKTVSYVRFVD-S-STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFV 734 (793)
T ss_pred ecCCCCCEEEEEEeC-C-CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEE
Confidence 257889999999974 4 68999999999999997531 122223345667889999999999999999999999
Q ss_pred EEcCCC
Q 002086 756 WKREEH 761 (969)
Q Consensus 756 Wdl~t~ 761 (969)
|+...+
T Consensus 735 w~~~~~ 740 (793)
T PLN00181 735 YHKAFP 740 (793)
T ss_pred EECCCC
Confidence 998763
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=232.76 Aligned_cols=296 Identities=17% Similarity=0.247 Sum_probs=229.1
Q ss_pred ehhhccCCCcceeeeecccc-cccccCCCCcccccccccc---cccccccccccccceeeeeEEEeeecCCccccCCCCc
Q 002086 330 EFEKSVGHSPVVKELMRREN-VNRINDSAGKFSANSYLSK---SLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPL 405 (969)
Q Consensus 330 E~~~~~GHs~~V~~l~~~~~-~~~~~t~s~d~~v~~~~~~---~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l 405 (969)
+++.+.||.++|..++..+. +..+++++.|..+..|... .|.........|.+.++.++.++ +|...+ .
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp--~g~~La--~--- 78 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP--HGRYLA--S--- 78 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC--CCcEEE--E---
Confidence 46778999999999996554 7789999999999988755 35555554446888898888887 555433 2
Q ss_pred ccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceE
Q 002086 406 LGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEV 485 (969)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~ 485 (969)
+..+....|+- . .-..++++.+|.||+..|.|++|+++|+|||||+.|+.|-||.+..+..
T Consensus 79 ------------aSFD~t~~Iw~--k-----~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 79 ------------ASFDATVVIWK--K-----EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred ------------eeccceEEEee--c-----CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence 11222222221 1 1234678999999999999999999999999999999999999875433
Q ss_pred EEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-
Q 002086 486 MSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR- 564 (969)
Q Consensus 486 l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~- 564 (969)
.. ....|++|+..|..+.|+|
T Consensus 140 fe----------------------------------------------------------c~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 140 FE----------------------------------------------------------CIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred EE----------------------------------------------------------EEeeeccccccccEEEEcCC
Confidence 22 1236889999999999999
Q ss_pred CcEEEEEeCCCcEEEEECCC---CcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEE
Q 002086 565 SHLLLSSSMDKTVRLWDMET---KSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVT 640 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t---~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~ 640 (969)
..+|+++|+|.+|++|+-.. -+|.+++ +|...|.+++|++ .+..|++++.|++|+||-....- ...|...++
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y 237 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALY 237 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeeccCc---chhcccceE
Confidence 89999999999999998772 3466666 7999999999999 89999999999999999866321 123457788
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 641 AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 641 sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
.+.|. ...|++++.|+.|++|............. +......|...|++++|.|....+|++++.||.|++|.+
T Consensus 238 ~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l-~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 238 DVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNL-LAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred eeeec--ccceEeccCCCEEEEEEecCCCCCchHHH-HHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 99998 45899999999999998774322111111 122336788899999999976689999999999999974
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=257.56 Aligned_cols=257 Identities=25% Similarity=0.448 Sum_probs=221.6
Q ss_pred cccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 434 SYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 434 ~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
.+||..=..++..|..|.|+|.+++|+|++.++++||.|-.|+||+..+.+++.
T Consensus 34 QlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf-------------------------- 87 (1202)
T KOG0292|consen 34 QLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF-------------------------- 87 (1202)
T ss_pred eeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh--------------------------
Confidence 467888788899999999999999999999999999999999999998765543
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF- 591 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~- 591 (969)
++.||-+-|..+.|++ -..++++|.|.+|+||++++++|+.++
T Consensus 88 -----------------------------------tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt 132 (1202)
T KOG0292|consen 88 -----------------------------------TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT 132 (1202)
T ss_pred -----------------------------------hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe
Confidence 6789999999999998 789999999999999999999999988
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----------------------------eEE--EEecCCCCEEE
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----------------------------LVV--DWTDLHEMVTA 641 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----------------------------~~~--~~~~~~~~V~s 641 (969)
+|+..|.|..|+| ..++++++|.|.+|+|||+..- .++ .+.+|...|+-
T Consensus 133 GHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw 211 (1202)
T KOG0292|consen 133 GHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW 211 (1202)
T ss_pred cCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence 9999999999999 8999999999999999998431 011 24567788999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE
Q 002086 642 ACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721 (969)
Q Consensus 642 v~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~ 721 (969)
++|+|.-..|++|+.|..|++|.+...+..... ...+|...|+++.|+|.. .++++.+.|++|+|||+.+...
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD------tcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD------TCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccccceeeh------hhhcccCCcceEEecCcc-ceeEecCCCccEEEEecccccc
Confidence 999999999999999999999999876654332 238999999999999976 7999999999999999876555
Q ss_pred EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 722 KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 722 ~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.............++-+|..++++.|- |+-+.+|.++.
T Consensus 285 v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleR 322 (1202)
T KOG0292|consen 285 VQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLER 322 (1202)
T ss_pred eeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcc
Confidence 555445566788999999998777665 77788999874
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=262.06 Aligned_cols=291 Identities=17% Similarity=0.292 Sum_probs=241.1
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
|..-+..|.+++|+|...+++++-..|.|.+||..-+.++.
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--------------------------------------- 45 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--------------------------------------- 45 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---------------------------------------
Confidence 44567789999999999999999999999999988554433
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEec
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNP 604 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp 604 (969)
.|..|.++|..++|+| ..+|++|+.|..|++|+..+.+|+.++ +|-+.|..+.|++
T Consensus 46 ----------------------rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh 103 (1202)
T KOG0292|consen 46 ----------------------RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH 103 (1202)
T ss_pred ----------------------hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC
Confidence 5778999999999999 899999999999999999999999876 9999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee--------
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ-------- 675 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~-------- 675 (969)
.-..|+++|.|.+|+||+..++.++. +.+|...|.|..|+|....+++++-|.+|+|||+...+......
T Consensus 104 -eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 104 -EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred -CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 88999999999999999999987664 66788999999999999999999999999999997644322111
Q ss_pred -------------eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--EEEEeecCCCCeEEEEEeCC
Q 002086 676 -------------VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--HKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 676 -------------~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~~~~~~V~sl~fspd 740 (969)
.-++....+|...|+-++|+|.. .++++|+.|..|++|...... ..-....|...|.++-|+|.
T Consensus 183 ~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~ 261 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH 261 (1202)
T ss_pred ccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCc
Confidence 11233457899999999999988 699999999999999965432 22234456778999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcc
Q 002086 741 GKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKK 808 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~ 808 (969)
..++++.|+|++|+|||+... ..+..+.+.++.|.|.+. ...-+...+|.+.+..|+.+.
T Consensus 262 q~lIlSnsEDksirVwDm~kR------t~v~tfrrendRFW~laa--hP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKR------TSVQTFRRENDRFWILAA--HPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred cceeEecCCCccEEEEecccc------cceeeeeccCCeEEEEEe--cCCcceeeeecCCceEEEEEc
Confidence 999999999999999999874 344555677787764332 223566678889999998543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=236.65 Aligned_cols=324 Identities=15% Similarity=0.190 Sum_probs=250.6
Q ss_pred ccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEE
Q 002086 380 LLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKF 459 (969)
Q Consensus 380 ~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~f 459 (969)
.+..+....|+++++|+.....+ .+++...+ +|++.++....++.+|.+.|+|+.|
T Consensus 59 tF~~H~~svFavsl~P~~~l~aT---------------GGgDD~Af---------lW~~~~ge~~~eltgHKDSVt~~~F 114 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVAT---------------GGGDDLAF---------LWDISTGEFAGELTGHKDSVTCCSF 114 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEe---------------cCCCceEE---------EEEccCCcceeEecCCCCceEEEEE
Confidence 44455566788877774322111 22333333 4466667778889999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCccccccee
Q 002086 460 SLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETV 539 (969)
Q Consensus 460 SpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 539 (969)
+.||.|||||+.+|.|+||+..++.....+......+..+.+.+....+ +.|..... .=.
T Consensus 115 shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~il-lAG~~DGs-------------------vWm 174 (399)
T KOG0296|consen 115 SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHIL-LAGSTDGS-------------------VWM 174 (399)
T ss_pred ccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEE-EeecCCCc-------------------EEE
Confidence 9999999999999999999999998877665444444444444432222 11111110 113
Q ss_pred eecCC-CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee--cCCCeEEEEEecCCCCEEEEEEC
Q 002086 540 FSLSE-KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA--HNDYVTCIQFNPMDDDYFISGSL 615 (969)
Q Consensus 540 ~~~~~-k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~--h~~~V~sv~fsp~~~~~L~sgs~ 615 (969)
|.+.. ...+.+.||+.++++=.|.| ++.++++..||+|++||..+++++..+. ......++.++. .+..++.|+.
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~ 253 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNS 253 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccC
Confidence 33444 45668899999999999999 9999999999999999999999988773 345678899988 8899999999
Q ss_pred CCeEEEEeCCCceEEEEecC---------CCCEEEEEE---ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 616 DAKVRIWSISDRLVVDWTDL---------HEMVTAACY---TPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 616 Dg~I~IWDl~~~~~~~~~~~---------~~~V~sv~f---spdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
++.+++-...+++++..... ...+.++.+ +..=.+.|+|+-||+|.|||+...++... -
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~---------c 324 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI---------C 324 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee---------c
Confidence 99999999999988765542 233444444 44556789999999999999988765433 4
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.|...|+.+.|-++ .+|++++.+|.|+.||.+....++....|...|.+++++|++++++|++.|++.+||++.
T Consensus 325 ~he~~V~~l~w~~t--~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 325 EHEDGVTKLKWLNT--DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCceEEEEEcCc--chheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 57888999999983 699999999999999999999888888999999999999999999999999999999875
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=248.44 Aligned_cols=245 Identities=22% Similarity=0.422 Sum_probs=208.7
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+||...+.++..|.||+|.|.|+.|. .+.|++|+.|.+|+|||+++|+.+.
T Consensus 221 iWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~--------------------------- 271 (499)
T KOG0281|consen 221 IWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN--------------------------- 271 (499)
T ss_pred EeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh---------------------------
Confidence 45777788999999999999999996 5699999999999999999887655
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEE----
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKL---- 590 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~---- 590 (969)
++.+|...|..+.|+. +++++++.|.+|.+||+....-+..
T Consensus 272 ----------------------------------tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVL 316 (499)
T KOG0281|consen 272 ----------------------------------TLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVL 316 (499)
T ss_pred ----------------------------------HHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHH
Confidence 5667999999999985 8999999999999999987764332
Q ss_pred eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 591 FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 591 ~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
.+|...|+.+.|+ ..++++++.|.+|++|++.+++.+. +.+|...|.|+.+ .|+++++|+.|.+|++||+..+.
T Consensus 317 vGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 317 VGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred hhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccH
Confidence 2899999999995 5799999999999999999998775 4567788888877 57899999999999999999998
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---------eEEEEeecCCCCeEEEEEeCC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---------VHKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---------~~~~~~~~~~~~V~sl~fspd 740 (969)
++... .+|..-|.++.|.. ..+++|..||+|++||.... .+......|.+.|..+.| |
T Consensus 392 cLRvL--------eGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D 458 (499)
T KOG0281|consen 392 CLRVL--------EGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--D 458 (499)
T ss_pred HHHHH--------hchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--c
Confidence 76543 78999999999975 68999999999999995432 223344567788999988 4
Q ss_pred CCEEEEEeCCCcEEEEEcCCC
Q 002086 741 GKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t~ 761 (969)
...+++++.|.+|.|||+.++
T Consensus 459 ~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 459 EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ceEEEeccCCCeEEEEEcCCC
Confidence 568999999999999999874
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=226.79 Aligned_cols=244 Identities=25% Similarity=0.367 Sum_probs=210.7
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
|+||+.+|+-|+++.+|.+|+||+.|.++.||-..+|+.+.
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG--------------------------------------- 46 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG--------------------------------------- 46 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---------------------------------------
Confidence 78999999999999999999999999999999887777765
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecC
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM 605 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~ 605 (969)
++.||++.|+|+.... ...++||+.|.+++|||+.+|+++..+....+|..+.|++
T Consensus 47 ----------------------ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~- 103 (327)
T KOG0643|consen 47 ----------------------TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF- 103 (327)
T ss_pred ----------------------eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc-
Confidence 6778999999999987 7999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEC-----CCeEEEEeCCC-------ce-EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 606 DDDYFISGSL-----DAKVRIWSISD-------RL-VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 606 ~~~~L~sgs~-----Dg~I~IWDl~~-------~~-~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
++++++.+.. .+.|.++|++. .+ .+.+..+...++.+-|.|-+++|++|..+|.|.+||+++++...
T Consensus 104 ~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v 183 (327)
T KOG0643|consen 104 GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELV 183 (327)
T ss_pred CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceee
Confidence 8888877654 36799999973 33 55666777899999999999999999999999999999986532
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--EE----------------------------
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--HK---------------------------- 722 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--~~---------------------------- 722 (969)
.....|...|+.++++++. .++++++.|.+-++||...+. ..
T Consensus 184 -------~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 184 -------DSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred -------echhhhccccccccccCCc-ceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceee
Confidence 2225688899999999998 899999999999999843211 00
Q ss_pred -----------E--------------EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 723 -----------F--------------RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 723 -----------~--------------~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+ ....|-++|++++|+|+|+..++|++||.|++.-++.
T Consensus 256 dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 256 DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 0 1124568899999999999999999999999987765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=272.14 Aligned_cols=244 Identities=15% Similarity=0.209 Sum_probs=200.3
Q ss_pred cccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
+...|.+++|++ ++.+||+++.||+|+|||+.+++.+.
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~----------------------------------------- 569 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT----------------------------------------- 569 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE-----------------------------------------
Confidence 456899999987 57899999999999999998765543
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMD 606 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~ 606 (969)
.+.+|.+.|++++|++ +.+|++|+.|++|++||+.++.++..+.+...|.++.|++.+
T Consensus 570 --------------------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 570 --------------------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629 (793)
T ss_pred --------------------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCC
Confidence 5668999999999996 579999999999999999999999888777899999997657
Q ss_pred CCEEEEEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 607 DDYFISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
+.+|++|+.||.|++||++... ...+..|...|.++.|. ++.+|++++.|++|+|||+........ ........+
T Consensus 630 g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~--~~~l~~~~g 706 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN--ETPLHSFMG 706 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC--CcceEEEcC
Confidence 8999999999999999998764 34566788899999997 678999999999999999975321000 001112357
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE--EE-----------eecCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK--FR-----------GFRNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~--~~-----------~~~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
|...+..+.|+|++ .+|++|+.|+.|++|+....... +. ...+...|.+++|+|++.+|++|+.||
T Consensus 707 h~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 707 HTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred CCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 88889999999987 79999999999999995432211 11 122345689999999999999999999
Q ss_pred cEEEEEc
Q 002086 752 QVYVWKR 758 (969)
Q Consensus 752 ~I~IWdl 758 (969)
.|+||++
T Consensus 786 ~I~i~~~ 792 (793)
T PLN00181 786 NIKILEM 792 (793)
T ss_pred cEEEEec
Confidence 9999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=242.77 Aligned_cols=301 Identities=19% Similarity=0.278 Sum_probs=241.7
Q ss_pred eeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCC
Q 002086 325 QLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNP 404 (969)
Q Consensus 325 ~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~ 404 (969)
++..+|.+.+..|+.-|.-+.++.++..+++++.|.+...|..
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v------------------------------------- 253 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIV------------------------------------- 253 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEE-------------------------------------
Confidence 5556677778888888888888888888888877776554430
Q ss_pred cccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce
Q 002086 405 LLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE 484 (969)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~ 484 (969)
+. +. .+++.++|.+|..+|.-+.||||.+||++|+.|..+++||+.+|+
T Consensus 254 -----------------------~~-------d~-~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 254 -----------------------VY-------DV-HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred -----------------------ec-------Cc-ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch
Confidence 00 11 145667899999999999999999999999999999999999988
Q ss_pred EEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC
Q 002086 485 VMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR 564 (969)
Q Consensus 485 ~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~ 564 (969)
....+. .+|...+.+++|.|
T Consensus 303 ~~~~y~------------------------------------------------------------~~~~~S~~sc~W~p 322 (519)
T KOG0293|consen 303 LRHLYP------------------------------------------------------------SGLGFSVSSCAWCP 322 (519)
T ss_pred hhhhcc------------------------------------------------------------cCcCCCcceeEEcc
Confidence 765322 12557789999999
Q ss_pred -CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEE
Q 002086 565 -SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAA 642 (969)
Q Consensus 565 -~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv 642 (969)
+..+++|+.|++|..||+.....-.--+ ....|.+++..+ ++.++++.+.|..|++|+..+...+.......+|+++
T Consensus 323 Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~ 401 (519)
T KOG0293|consen 323 DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSF 401 (519)
T ss_pred CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEE
Confidence 8899999999999999998654322212 235699999999 9999999999999999999888777777788899999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE
Q 002086 643 CYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK 722 (969)
Q Consensus 643 ~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~ 722 (969)
+++.+++++++.-.+..|++||+...+++.... .......|..-+|--.+..++++|+.|+.|+||+.......
T Consensus 402 ~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~------Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 402 SISKDGKLALVNLQDQEIHLWDLEENKLVRKYF------GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL 475 (519)
T ss_pred EEcCCCcEEEEEcccCeeEEeecchhhHHHHhh------cccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee
Confidence 999999999999999999999999766543321 12233456666777666689999999999999997766655
Q ss_pred EEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 002086 723 FRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 723 ~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t 760 (969)
....+|...|++++|+| +-.++|+|+.||+|+||....
T Consensus 476 ~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 476 AVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 55666778899999999 557899999999999999875
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=224.89 Aligned_cols=249 Identities=22% Similarity=0.338 Sum_probs=223.4
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+++++|.+.|.+++|+.+|..|++|+.|++++||+++.......
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~------------------------------------ 57 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE------------------------------------ 57 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh------------------------------------
Confidence 67889999999999999999999999999999999986532221
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQF 602 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~f 602 (969)
....+|.+.|-.++|+| .+.|++++.|++|++||++.++++......+.-.-+.|
T Consensus 58 -----------------------~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~w 114 (313)
T KOG1407|consen 58 -----------------------LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITW 114 (313)
T ss_pred -----------------------hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEE
Confidence 14568999999999998 78999999999999999999999999988887788899
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
+| ++.++++++.|..|.+.|.++.+++........+..++|+-++.+++.....|+|.|......+.++. .
T Consensus 115 sp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~s--------i 185 (313)
T KOG1407|consen 115 SP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQS--------I 185 (313)
T ss_pred cC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccc--------c
Confidence 99 99999999999999999999999998888888899999998888888888889999998886665433 3
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
..|.....||.|+|+| .++++|+.|..+-+||+.++++.-....+.-+|..++|+.||++||+|++|-.|-|=+++++.
T Consensus 186 ~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 186 KAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred ccCCcceEEEEECCCC-ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence 7899999999999999 899999999999999999988877777788899999999999999999999999999999853
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-26 Score=233.65 Aligned_cols=255 Identities=25% Similarity=0.435 Sum_probs=218.2
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
|....+-|..|||||+||++|+.||.|.||+..+|++-+.++-
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY------------------------------------- 253 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY------------------------------------- 253 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhh-------------------------------------
Confidence 4566788999999999999999999999999998876542210
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPM 605 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~ 605 (969)
+....|.-|...|.|+.|+. ..+|++|+.||.|++|.+.+|.|++.| .|+..|+|+.|+.
T Consensus 254 ----------------QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr- 316 (508)
T KOG0275|consen 254 ----------------QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR- 316 (508)
T ss_pred ----------------hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-
Confidence 01113455889999999998 789999999999999999999999998 7999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
++..+++++.|.+++|--+.+|+++. +.+|...|+.+.|.++|.++++++.||+|++|+..+.++...+.. .+
T Consensus 317 D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~------~~ 390 (508)
T KOG0275|consen 317 DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP------LG 390 (508)
T ss_pred CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC------CC
Confidence 99999999999999999999998765 667888999999999999999999999999999999888665432 45
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
...+|..+-.-|.++..++++...++|+|.++.. .+..+. +....+...+++.+|.|.++.+.++|+.++.|.+.+++
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 6778999999999999999999999999999654 334343 34455667889999999999999999999999998854
Q ss_pred c
Q 002086 763 N 763 (969)
Q Consensus 763 ~ 763 (969)
.
T Consensus 471 L 471 (508)
T KOG0275|consen 471 L 471 (508)
T ss_pred e
Confidence 3
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=229.74 Aligned_cols=268 Identities=18% Similarity=0.300 Sum_probs=217.3
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+.+|..|++.|++++.+|+.+++||||.|....||++.+|+.+.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~------------------------------------ 100 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG------------------------------------ 100 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee------------------------------------
Confidence 56789999999999999999999999999999999999876433
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
.+.+|.+.|+++.|+. +.+|+||..+|.|+||+..++.....+ ..-..|.-+.
T Consensus 101 -------------------------eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 101 -------------------------ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred -------------------------EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence 6778999999999998 899999999999999999999887776 4677899999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCC-ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee-----
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ----- 675 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~----- 675 (969)
|+| ....|++|+.||.|.+|.+.+ +.+..+.+|..++++-.|.|+|+.++++..||+|++|+..+++......
T Consensus 156 WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~ 234 (399)
T KOG0296|consen 156 WHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGL 234 (399)
T ss_pred ecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccC
Confidence 999 999999999999999999998 5566677888999999999999999999999999999999987654322
Q ss_pred -eee-----------------------------c--------ccccCCCCCeEEEEEcCCCC--ceEEEEeCCCcEEEEe
Q 002086 676 -VDF-----------------------------Q--------TKKKSSTRKITGFQFSPSNP--SEVLVTSADSRIRILD 715 (969)
Q Consensus 676 -~~~-----------------------------~--------~~~~~h~~~It~l~fspd~~--~~l~sgs~Dg~I~IwD 715 (969)
... . .....+...+.++.+.|... .+.++|+.||+|.|||
T Consensus 235 ~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD 314 (399)
T KOG0296|consen 235 ELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYD 314 (399)
T ss_pred cCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEe
Confidence 000 0 00012223334444444221 3678889999999999
Q ss_pred CCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCcee
Q 002086 716 GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQ 781 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~ 781 (969)
......... ..|...|+.+.|-+ ..+|++++.||.|++||.++ |+....+..+..++.
T Consensus 315 ~a~~~~R~~-c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt------G~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 315 LAASTLRHI-CEHEDGVTKLKWLN-TDYLLTACANGKVRQWDART------GQLKFTYTGHQMGIL 372 (399)
T ss_pred cccchhhee-ccCCCceEEEEEcC-cchheeeccCceEEeeeccc------cceEEEEecCchhee
Confidence 765443332 34677799999998 78999999999999999999 555566666666654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=227.21 Aligned_cols=242 Identities=20% Similarity=0.341 Sum_probs=205.1
Q ss_pred cccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
-.+.++.++|++.. ..+++++.||.++|||+.
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~----------------------------------------------- 91 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLT----------------------------------------------- 91 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccC-----------------------------------------------
Confidence 47889999999954 588999999999999953
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPM 605 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~ 605 (969)
...+|+..++.|..+|.++.|++ ...++++|.|++|++|+...++.+.+| +|...|...+|+|.
T Consensus 92 -------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~ 158 (311)
T KOG0277|consen 92 -------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPH 158 (311)
T ss_pred -------------CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCC
Confidence 13346678899999999999998 678899999999999999999999988 89999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCC-ceEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 606 DDDYFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
..++|++++.|+++++||++. ++.+.+..|...|.++.|+. +...|++|+.|+.|++||++..+.. .....
T Consensus 159 ~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p-------l~eL~ 231 (311)
T KOG0277|consen 159 IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP-------LFELN 231 (311)
T ss_pred CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc-------ceeec
Confidence 999999999999999999975 56666777888999999998 4567889999999999999987642 22337
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-EEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEc
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV-HKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl 758 (969)
+|.-.|..++|+|....+|++++.|-+++|||....- ..-....|..-+..+.|++ ++.++|+++.|+.++||+-
T Consensus 232 gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 232 GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 8999999999999888899999999999999965321 1112224555677889988 7789999999999999983
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=229.40 Aligned_cols=415 Identities=18% Similarity=0.204 Sum_probs=279.2
Q ss_pred CCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeee-cccccccccCCCCcccccccccccccccccc-
Q 002086 299 TGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELM-RRENVNRINDSAGKFSANSYLSKSLRMSKRR- 376 (969)
Q Consensus 299 ~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~-~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~- 376 (969)
+|..+++.-.......+.||||+.+..+. |+ .--+..|..+. .|.++..+++.++ ..+.||....--+.+..
T Consensus 166 ~~G~~l~~vD~s~~h~lSVWdWqk~~~~~--~v---k~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~ 239 (626)
T KOG2106|consen 166 NGGSLLCAVDDSNPHMLSVWDWQKKAKLG--PV---KTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQG 239 (626)
T ss_pred CCCceEEEecCCCccccchhhchhhhccC--cc---eeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEee
Confidence 44444443333345567899999998854 22 33356667777 6889999999854 44788864443333331
Q ss_pred --cccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCE
Q 002086 377 --GAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSI 454 (969)
Q Consensus 377 --~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I 454 (969)
.....+++.++.|.. .||... ++....+.+|.. ...+..++..+|.+.|
T Consensus 240 ~fek~ekk~Vl~v~F~e--ngdviT--------------------gDS~G~i~Iw~~-------~~~~~~k~~~aH~ggv 290 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLE--NGDVIT--------------------GDSGGNILIWSK-------GTNRISKQVHAHDGGV 290 (626)
T ss_pred ccccccceEEEEEEEcC--CCCEEe--------------------ecCCceEEEEeC-------CCceEEeEeeecCCce
Confidence 112236666666654 344333 223333333322 3344555556999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEecccceEEEe--ecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 455 WTIKFSLDARFLASAGEDRVIHVWEVQECEVMSM--SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 455 ~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~--~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
.+|+...+|.+|- |+.|+.|..|| ..-+.++. +.....++..+.....+ .+.|........
T Consensus 291 ~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d---i~vGTtrN~iL~------------ 353 (626)
T KOG2106|consen 291 FSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD---ILVGTTRNFILQ------------ 353 (626)
T ss_pred EEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCCCc---EEEeeccceEEE------------
Confidence 9999999997555 99999999999 32222221 22222222222222111 111111111000
Q ss_pred ccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE
Q 002086 533 VHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 533 ~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~ 611 (969)
=.+.........+|....+.++.+| .++++|++.|++|++|+ ..+.+.......++.|+.|+| .+ .++
T Consensus 354 -------Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va 422 (626)
T KOG2106|consen 354 -------GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVA 422 (626)
T ss_pred -------eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEE
Confidence 0122233346789999999999999 88999999999999999 666777777889999999999 66 999
Q ss_pred EEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEE
Q 002086 612 SGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~ 691 (969)
.|...|...+.|.++..++.......+++++.|+|+|.+||+|+.|+.|+||-+......... ..+.+..+|+.
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r------~~k~~gs~ith 496 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR------VGKCSGSPITH 496 (626)
T ss_pred EeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE------eeeecCceeEE
Confidence 999999999999999888887777899999999999999999999999999999876543221 11334489999
Q ss_pred EEEcCCCCceEEEEeCCCcEEEEeCCcce--------------EE--EE--eecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 692 FQFSPSNPSEVLVTSADSRIRILDGLDIV--------------HK--FR--GFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 692 l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--------------~~--~~--~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
+.|++|+ +++.+-+.|-.|..|...... ++ |. +-.+...|..++-+.+.++||+|.+.|+|
T Consensus 497 LDwS~Ds-~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v 575 (626)
T KOG2106|consen 497 LDWSSDS-QFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKV 575 (626)
T ss_pred eeecCCC-ceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceE
Confidence 9999998 899999999999999632211 01 11 11234455667778888999999999999
Q ss_pred EEEEcCCCCccCCCceeEEecccCCceeeeeeE
Q 002086 754 YVWKREEHRNASTGKRAIITTRNHEHFQCKDVS 786 (969)
Q Consensus 754 ~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s 786 (969)
++|...-- +..........+..++.|+++.
T Consensus 576 ~lf~yPc~---s~rA~~he~~ghs~~vt~V~Fl 605 (626)
T KOG2106|consen 576 HLFSYPCS---SPRAPSHEYGGHSSHVTNVAFL 605 (626)
T ss_pred EEEccccC---CCcccceeeccccceeEEEEEe
Confidence 99987531 1122455566666676654444
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=239.60 Aligned_cols=233 Identities=20% Similarity=0.351 Sum_probs=196.1
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
....|+|+.+. ...+++|..|++|+|||..+.+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~------------------------------------------ 231 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK------------------------------------------ 231 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHH------------------------------------------
Confidence 45789999985 5579999999999999988654433
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDD 608 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~ 608 (969)
.+.||++.|.|+.|.. ..|++|+.|.+|+|||+++++++.++ .|...|..+.|+ +.
T Consensus 232 -------------------~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~---ng 288 (499)
T KOG0281|consen 232 -------------------ILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NG 288 (499)
T ss_pred -------------------hhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe---CC
Confidence 6789999999999985 69999999999999999999999876 899999999995 68
Q ss_pred EEEEEECCCeEEEEeCCCceEE----EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 609 YFISGSLDAKVRIWSISDRLVV----DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~~~----~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
++++++.|.+|.+||+....-. .+.+|...|+.+.|+ .+++++++.|.+|++|++.+.+.+.. ..+
T Consensus 289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRt--------l~g 358 (499)
T KOG0281|consen 289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRT--------LNG 358 (499)
T ss_pred EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehh--------hhc
Confidence 9999999999999999775422 356788899999996 46999999999999999999886544 378
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
|...|.|+++.. .++++|+.|.+|++||.....+.-...+|..-|.++.| |.+.+++|+.||+|+|||+.....+
T Consensus 359 HkRGIAClQYr~---rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 359 HKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred ccccceehhccC---eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCC
Confidence 999999998863 79999999999999997654433333345566888888 5678999999999999999886544
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-25 Score=237.83 Aligned_cols=240 Identities=15% Similarity=0.259 Sum_probs=207.2
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
-+-.|..+.|.|+|+.|+||+..|.+.||+......
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------------------------------------------- 130 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------------------------------------------- 130 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH--------------------------------------------
Confidence 356899999999999999999999999999642100
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeec-CCCeEEEEEecCCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAH-NDYVTCIQFNPMDD 607 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h-~~~V~sv~fsp~~~ 607 (969)
...++.|...|.++.|+. +..+++|+.+|.|++|+...........| ...|++++|+| ++
T Consensus 131 -----------------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-nD 192 (464)
T KOG0284|consen 131 -----------------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-ND 192 (464)
T ss_pred -----------------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCC-CC
Confidence 014578999999999998 89999999999999999987666555554 59999999999 99
Q ss_pred CEEEEEECCCeEEEEeCCCceE-EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC
Q 002086 608 DYFISGSLDAKVRIWSISDRLV-VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST 686 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~-~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~ 686 (969)
..|++++.||+|+|||....+. ..+.+|.-.|.++.|+|.-.+|++|+.|..|++||.+++.++... ..|.
T Consensus 193 skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl--------h~HK 264 (464)
T KOG0284|consen 193 SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL--------HGHK 264 (464)
T ss_pred ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh--------hhcc
Confidence 9999999999999999987543 345678888999999999999999999999999999999876443 6789
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 002086 687 RKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t 760 (969)
..|..+.|+|++ .+|++++.|..++++|++.....+....|...++++.|+| ...+|.+|+.||.|..|.+..
T Consensus 265 ntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 265 NTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL 338 (464)
T ss_pred ceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccc
Confidence 999999999998 8999999999999999886555555556777899999999 567899999999999999984
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=219.14 Aligned_cols=255 Identities=24% Similarity=0.448 Sum_probs=205.7
Q ss_pred cceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
.++..+.|+.-.+.|++|.|+++|.+|++++.|.+|+|||..+++.+.+
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t------------------------------- 51 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT------------------------------- 51 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE-------------------------------
Confidence 3445556666788999999999999999999999999999998877663
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC--CCcEEEEECCCCcEEEEe-ecCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM--DKTVRLWDMETKSCLKLF-AHND 595 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~--DgtV~IWDl~t~~~i~~~-~h~~ 595 (969)
+..+...|..++|.. ...++.++. |.+|+..++.+.+.++.| +|..
T Consensus 52 ------------------------------i~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~ 101 (311)
T KOG1446|consen 52 ------------------------------INSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKK 101 (311)
T ss_pred ------------------------------eecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCc
Confidence 333445566777765 666666665 899999999999999999 8999
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
.|.+|+.+| -++.|++++.|++|++||++..++...+.... -..++|.|+|-++|++...+.|++||++....-+...
T Consensus 102 ~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t 179 (311)
T KOG1446|consen 102 RVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT 179 (311)
T ss_pred eEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecccCCCCcee
Confidence 999999999 67999999999999999999777666555443 3467999999999999998899999999764433222
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCe-EEEEEeCCCCEEEEEeCCCc
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQ-ISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V-~sl~fspdg~~LaSgs~Dg~ 752 (969)
+.+. .......+.+.|+|+| +.++.+...+.+++.|... ....+..+.....+ ...+|+||++++++|+.||+
T Consensus 180 f~i~---~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~ 255 (311)
T KOG1446|consen 180 FSIT---DNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGT 255 (311)
T ss_pred EccC---CCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCc
Confidence 2221 2556789999999999 7999999999999999554 44555555444422 47889999999999999999
Q ss_pred EEEEEcCCC
Q 002086 753 VYVWKREEH 761 (969)
Q Consensus 753 I~IWdl~t~ 761 (969)
|++|+++++
T Consensus 256 i~vw~~~tg 264 (311)
T KOG1446|consen 256 IHVWNLETG 264 (311)
T ss_pred EEEEEcCCC
Confidence 999999883
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=229.32 Aligned_cols=272 Identities=18% Similarity=0.298 Sum_probs=225.5
Q ss_pred CcceEEEccCCCc--ccccccceeeeEecccccCEEEEEEeCCC---CEEEEEeCCCcEEEEecccceEEEeecCCccCc
Q 002086 422 SNHWVKVRQSGKS--YKDLSALHLCQEIQAHEGSIWTIKFSLDA---RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496 (969)
Q Consensus 422 ~~~~v~v~~~~~~--l~dl~~~~l~~~L~gH~~~I~~l~fSpDg---~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v 496 (969)
...||..+.+... +|+++ ++...++.||.++|.+++|.-.. ..|+++|.|.++++|.++.++....
T Consensus 114 ~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~-------- 184 (423)
T KOG0313|consen 114 ASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK-------- 184 (423)
T ss_pred cCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh--------
Confidence 3667777666554 44554 67888899999999988886533 3699999999999999886554321
Q ss_pred ccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC
Q 002086 497 HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK 575 (969)
Q Consensus 497 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg 575 (969)
.+..-.||...|-++...+ +..+++|+.|.
T Consensus 185 -------------------------------------------------~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 185 -------------------------------------------------ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred -------------------------------------------------HHhHhcccccceeEEEecCCCCeEEeecccc
Confidence 1112348999999999887 89999999999
Q ss_pred cEEEEECCC-------------------------CcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE
Q 002086 576 TVRLWDMET-------------------------KSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV 629 (969)
Q Consensus 576 tV~IWDl~t-------------------------~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~ 629 (969)
+|+||+..+ +.++.++ +|..+|.+|.|.+ ...+++++.|.+|+.||+.++..
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~ 293 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGL 293 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccc
Confidence 999999421 1122233 8999999999985 88999999999999999999999
Q ss_pred EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 630 VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 630 ~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
.........++++.++|..++|++|+.|..|++||.+++.-.. ......+|...|.++.|+|.+...|++++.|+
T Consensus 294 ~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~-----v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 294 KSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV-----VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred eeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCce-----eEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 9888888999999999999999999999999999999874321 12233789999999999999999999999999
Q ss_pred cEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 710 RIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 710 ~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
++++||.+... ..+....|...|.++.|. ++.+|++|+.|.+|+|+.-.
T Consensus 369 t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 369 TVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999998766 677788889999999998 56799999999999998764
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=242.68 Aligned_cols=249 Identities=16% Similarity=0.305 Sum_probs=213.7
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
..++|..|...|.++.|+|...+++++-..|.|.||+.++...++.+
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf--------------------------------- 51 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF--------------------------------- 51 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee---------------------------------
Confidence 34557779999999999999999999999999999999987766533
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCI 600 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv 600 (969)
.-..-+|.+..|-. .+.+++|+.|..|+||+..+++.++.| +|.+.|.||
T Consensus 52 ----------------------------eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~i 103 (794)
T KOG0276|consen 52 ----------------------------EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSI 103 (794)
T ss_pred ----------------------------eecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeee
Confidence 23445677788876 799999999999999999999999999 899999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
+.+| ...++++++.|-+|++||...+ ....+.+|...|.+++|.| |.+.+++++-|++|+||.+.......+
T Consensus 104 avHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT---- 178 (794)
T KOG0276|consen 104 AVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT---- 178 (794)
T ss_pred eecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee----
Confidence 9999 8899999999999999999886 3456778889999999999 567999999999999999987664332
Q ss_pred ecccccCCCCCeEEEEEcCCC-CceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSN-PSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~-~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
..+|...|.|+.|-+.+ ..+|++|+.|.+|+|||..+ ++.++.+| ...|..++|+|.-..++||++||+|+
T Consensus 179 ----l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH--t~Nvs~v~fhp~lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 179 ----LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH--TNNVSFVFFHPELPIIISGSEDGTVR 252 (794)
T ss_pred ----eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc--cccceEEEecCCCcEEEEecCCccEE
Confidence 27899999999998854 34899999999999999665 45555554 55688999999999999999999999
Q ss_pred EEEcCCCCc
Q 002086 755 VWKREEHRN 763 (969)
Q Consensus 755 IWdl~t~~~ 763 (969)
||.-.+-+.
T Consensus 253 iWhs~Ty~l 261 (794)
T KOG0276|consen 253 IWNSKTYKL 261 (794)
T ss_pred EecCcceeh
Confidence 999887543
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=228.71 Aligned_cols=214 Identities=19% Similarity=0.274 Sum_probs=193.5
Q ss_pred eeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECC
Q 002086 539 VFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLD 616 (969)
Q Consensus 539 v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~D 616 (969)
-|....+....+.||.+.|.|+++.| +..|++|+.|++|+|||+.++++..++ +|...|..+++++ ...|+++++.|
T Consensus 136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~ged 214 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGED 214 (460)
T ss_pred cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCC
Confidence 45556677788999999999999999 899999999999999999999998888 7999999999999 88999999999
Q ss_pred CeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc
Q 002086 617 AKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS 695 (969)
Q Consensus 617 g~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs 695 (969)
+.|+.||+...+++ .+.+|-..|.|++.+|.-..|++|+.|.+++|||+++...+... .+|..+|..+.+.
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l--------~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL--------SGHTNPVASVMCQ 286 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe--------cCCCCcceeEEee
Confidence 99999999988765 46778899999999999999999999999999999988755443 7899999999999
Q ss_pred CCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 696 PSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 696 pd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
|.+ ..+++|+.|++|++||............|...|.+++.+|....+|+++.| .|+.|++..+..
T Consensus 287 ~~d-pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f 352 (460)
T KOG0285|consen 287 PTD-PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF 352 (460)
T ss_pred cCC-CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccch
Confidence 988 589999999999999998888777888889999999999999999999977 699999998543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=237.70 Aligned_cols=251 Identities=21% Similarity=0.317 Sum_probs=219.8
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+|+.++..+++.+.-..-+|.+++|-+..+++++|+.|..|+||+..+++.+.
T Consensus 39 IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~--------------------------- 91 (794)
T KOG0276|consen 39 IWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK--------------------------- 91 (794)
T ss_pred EEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE---------------------------
Confidence 45777778888999999999999999999999999999999999999887765
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC-cEEEEe-
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK-SCLKLF- 591 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~-~~i~~~- 591 (969)
.|..|.+-|.+++.+| ..+++|+|.|-+|++||.+.+ .|.++|
T Consensus 92 ----------------------------------~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe 137 (794)
T KOG0276|consen 92 ----------------------------------TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE 137 (794)
T ss_pred ----------------------------------EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence 6778999999999999 899999999999999999875 567777
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-EEEEecCCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCCC
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VVDWTDLHEMVTAACYTPDG--QNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~~~~~~V~sv~fspdg--~~Lasgs~dg~I~IwDl~~~ 668 (969)
+|+..|.+|+|+|.+.+.|++++.|++|+||.+.... ...+.+|...|+|++|-+.| .+|++|+.|.+|+|||..+.
T Consensus 138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence 8999999999999999999999999999999998764 45677889999999999865 59999999999999999998
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
.+++.. .+|...|..+.|+|.- ..+++|+.||+++||+..+....-...-....+.+++-.+.+..++.|.
T Consensus 218 ~CV~TL--------eGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 218 SCVQTL--------EGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred HHHHHh--------hcccccceEEEecCCC-cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 876543 7899999999999987 6999999999999999776554444444566789999889888889988
Q ss_pred CCCcEEE
Q 002086 749 EDSQVYV 755 (969)
Q Consensus 749 ~Dg~I~I 755 (969)
..|.|.|
T Consensus 289 Deg~i~v 295 (794)
T KOG0276|consen 289 DEGSVTV 295 (794)
T ss_pred cCCcEEE
Confidence 7776654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-24 Score=220.29 Aligned_cols=244 Identities=21% Similarity=0.354 Sum_probs=205.8
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
..+..+++|.++|++++.+ +.|+|+||.|-+|+|||+.....+.
T Consensus 34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---------------------------------- 77 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---------------------------------- 77 (362)
T ss_pred eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc----------------------------------
Confidence 3455688999999999996 8999999999999999998644332
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC---cEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCe
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS---HLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYV 597 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~---~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V 597 (969)
.+..|.+.|+++.|.+. ..|++|+.||.|.+|++..-.++..+ +|.+.|
T Consensus 78 ---------------------------~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~V 130 (362)
T KOG0294|consen 78 ---------------------------ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQV 130 (362)
T ss_pred ---------------------------ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccc
Confidence 45679999999999873 49999999999999999999999988 899999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
+.++++| .+.+.++.+.|+.+++||+-.|+...........+.+.|+|.|.+++++..+ .|-||.+.+..+....
T Consensus 131 t~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i--- 205 (362)
T KOG0294|consen 131 TDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREI--- 205 (362)
T ss_pred ceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhh---
Confidence 9999999 9999999999999999999998877777777777779999999999988755 6889998876653321
Q ss_pred ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEE--eCCCCEEEEEeCCCcEEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAF--NADGKYIISASEDSQVYV 755 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~f--spdg~~LaSgs~Dg~I~I 755 (969)
.....+.++.|... ..+++|..|+.|.+||............|...|-.+.+ .|++.||+|++.||.|+|
T Consensus 206 ------~~~~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 206 ------ENPKRILCATFLDG--SELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred ------hccccceeeeecCC--ceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence 12356777777654 59999999999999998766666666677778888774 567899999999999999
Q ss_pred EEcCCC
Q 002086 756 WKREEH 761 (969)
Q Consensus 756 Wdl~t~ 761 (969)
||++..
T Consensus 278 Wd~~~~ 283 (362)
T KOG0294|consen 278 WDIDME 283 (362)
T ss_pred EEcccc
Confidence 999874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=233.28 Aligned_cols=248 Identities=20% Similarity=0.359 Sum_probs=210.0
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
...+++.-....|++++|-.||++||.|...|.|+|+|..+...
T Consensus 59 ~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i------------------------------------ 102 (487)
T KOG0310|consen 59 SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI------------------------------------ 102 (487)
T ss_pred hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH------------------------------------
Confidence 33444556788999999999999999999999999999654222
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVT 598 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~ 598 (969)
+..+.+|+.+|..+.|+| +..|++|+.|+.+++||+.+......+ +|++.|.
T Consensus 103 -------------------------LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 103 -------------------------LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred -------------------------HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence 225778999999999998 688999999999999999998864333 8999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
|.+|+|.++..+++|+.||+|++||++.. ..+..+.|..+|..+.+-|.|..|++++ ...|+|||+.++.....
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~---- 232 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLT---- 232 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehh----
Confidence 99999988889999999999999999987 7778889999999999999999999876 45899999996654322
Q ss_pred ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
....|.+.|+|+.+..++ ..|++++-|+.+++||+.+... .......++|.+++.+||++.++.|-.||.+.+=+
T Consensus 233 ---~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~Kv-v~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 233 ---SMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYKV-VHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred ---hhhcccceEEEEEeecCC-ceEeecccccceEEEEccceEE-EEeeecccceeeEEecCCCceEEEecccceeeeeh
Confidence 224589999999999987 8999999999999999655444 34456788999999999999999999999988875
Q ss_pred cCC
Q 002086 758 REE 760 (969)
Q Consensus 758 l~t 760 (969)
...
T Consensus 308 ~~~ 310 (487)
T KOG0310|consen 308 REV 310 (487)
T ss_pred hhc
Confidence 544
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=218.82 Aligned_cols=249 Identities=18% Similarity=0.282 Sum_probs=213.4
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.++.-+.+|.||.++|+...+..+...-|+++.|-+.+|||..+|..+..+
T Consensus 47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf----------------------------- 97 (334)
T KOG0278|consen 47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF----------------------------- 97 (334)
T ss_pred CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-----------------------------
Confidence 344457789999999999999999999999999999999999887665432
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE-EE-EeecCC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC-LK-LFAHND 595 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~-i~-~~~h~~ 595 (969)
.|..-|.+++|+. .++|++|+.++.++|||++..+. .. .-+|.+
T Consensus 98 ---------------------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 98 ---------------------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred ---------------------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 3777899999998 78999999999999999987653 23 338999
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
.|..+.|.. .++.|++...|++||+||.+++..++.+.....|+++.++++|++|.++ ..+.|.+||..+..++...
T Consensus 145 ~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~- 221 (334)
T KOG0278|consen 145 GIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSY- 221 (334)
T ss_pred cceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeec-
Confidence 999999998 7888999999999999999999999999999999999999999877665 4678999999988766543
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
.....|.+...+|.. ..+++|+.|..++.||..+....-. ...|.++|.|+.|+|||...++|++||+|+
T Consensus 222 --------k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 222 --------KMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred --------cCccccccccccCCC-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEE
Confidence 335568889999987 8999999999999999665444333 356889999999999999999999999999
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
||....+
T Consensus 293 lWQt~~~ 299 (334)
T KOG0278|consen 293 LWQTTPG 299 (334)
T ss_pred EEEecCC
Confidence 9998764
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.92 E-value=9e-23 Score=219.20 Aligned_cols=284 Identities=24% Similarity=0.400 Sum_probs=216.0
Q ss_pred hhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHH
Q 002086 332 EKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQRE 411 (969)
Q Consensus 332 ~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~ 411 (969)
..+.+|...|.++.+..+...+++++.+..+..|...... ....+.........+.+.++...+..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~--------- 68 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLAS--------- 68 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCCEEEE---------
Confidence 5567999999999987777777777777777766533211 11111111122223333333322111
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecC
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEG 491 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~ 491 (969)
...++... ++++...+....+.+|...|.+++|++++++|++++.|+.|++||+.+++...
T Consensus 69 ------~~~~~~i~---------i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---- 129 (289)
T cd00200 69 ------GSSDKTIR---------LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT---- 129 (289)
T ss_pred ------EcCCCeEE---------EEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE----
Confidence 11122222 33455556677788999999999999999999999999999999998655433
Q ss_pred CccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEE
Q 002086 492 NLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLS 570 (969)
Q Consensus 492 ~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~S 570 (969)
.+..|...|.++.|++ +.++++
T Consensus 130 ---------------------------------------------------------~~~~~~~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 130 ---------------------------------------------------------TLRGHTDWVNSVAFSPDGTFVAS 152 (289)
T ss_pred ---------------------------------------------------------EeccCCCcEEEEEEcCcCCEEEE
Confidence 3446888999999999 778888
Q ss_pred EeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe-cCCCCEEEEEEccCC
Q 002086 571 SSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT-DLHEMVTAACYTPDG 648 (969)
Q Consensus 571 gs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-~~~~~V~sv~fspdg 648 (969)
++.|+.|++||+.+++.+..+ .|...|.++.|+| ++..|++++.|+.|++||+..++.+... .+...+.+++|+|++
T Consensus 153 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 231 (289)
T cd00200 153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231 (289)
T ss_pred EcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC
Confidence 888999999999988887776 6778999999999 8889999999999999999988777666 677899999999998
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 649 QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 649 ~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.++++++.+|.|++|++..++..... ..|...|.+++|+|++ ..+++++.|+.|++|+
T Consensus 232 ~~~~~~~~~~~i~i~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 YLLASGSEDGTIRVWDLRTGECVQTL--------SGHTNSVTSLAWSPDG-KRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCCcEEEEEcCCceeEEEc--------cccCCcEEEEEECCCC-CEEEEecCCCeEEecC
Confidence 88888888999999999876654332 3567789999999987 7999999999999996
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=234.04 Aligned_cols=288 Identities=16% Similarity=0.221 Sum_probs=219.8
Q ss_pred CCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE----EEEe--ecCCCeEEEEEecCCCCEEEEEECC
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC----LKLF--AHNDYVTCIQFNPMDDDYFISGSLD 616 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~----i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D 616 (969)
...-..+.+|+..|.++++.| |..|++|+.|.+|++||+..... .+.+ .....|.+++|++ .++.|++.+..
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGS 235 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecC
Confidence 334457889999999999998 99999999999999999986432 1222 3567899999999 89999999888
Q ss_pred CeEEEEeCCCceEEE-------------EecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 617 AKVRIWSISDRLVVD-------------WTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 617 g~I~IWDl~~~~~~~-------------~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
...+|+|-...+++. ..+|...++|.+|+|.. +.|++++.||+++|||+...+..... + .....
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV-i-k~k~~ 313 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV-I-KTKPA 313 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE-E-eeccC
Confidence 999999987655443 45667789999999975 47889999999999999887643221 1 11122
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-----ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-----IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-----~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
.+..-+++.++|++++ .+|++|+.||.|.+|+... ....-..|.....|+++.||+||++|++-+.|+++++||
T Consensus 314 ~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 3556688999999999 6799999999999999543 233334555566899999999999999999999999999
Q ss_pred cCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcccc-----
Q 002086 758 REEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG----- 832 (969)
Q Consensus 758 l~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~----- 832 (969)
++..+. ++.........| ...-++|||+...|+++
T Consensus 393 Lrq~kk-----pL~~~tgL~t~~-----------------------------------~~tdc~FSPd~kli~TGtS~~~ 432 (641)
T KOG0772|consen 393 LRQFKK-----PLNVRTGLPTPF-----------------------------------PGTDCCFSPDDKLILTGTSAPN 432 (641)
T ss_pred cccccc-----chhhhcCCCccC-----------------------------------CCCccccCCCceEEEecccccC
Confidence 997321 111111111111 12356788888887765
Q ss_pred -CCCCccccCCCCCCccccCCCCCCCCccccccCCCCCCccccC
Q 002086 833 -HSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSN 875 (969)
Q Consensus 833 -~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s 875 (969)
...+.|+.|...+......+..+...+..+.|||.++++|+.+
T Consensus 433 ~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 433 GMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred CCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence 2334688888887777777778888999999999999999987
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=243.55 Aligned_cols=251 Identities=23% Similarity=0.377 Sum_probs=212.2
Q ss_pred ccccccceeeeE-ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 435 YKDLSALHLCQE-IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 435 l~dl~~~~l~~~-L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
+|+....+.+.. |.||.+.|++++|..-+.+|++|+.|.+++|||+.+|+++.
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~-------------------------- 285 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH-------------------------- 285 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE--------------------------
Confidence 446666666666 99999999999999878899999999999999999888766
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA- 592 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~- 592 (969)
.+.||.+.|.++...+ ..+++|+.|.+|++|++.++.++.++.
T Consensus 286 -----------------------------------~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~ 329 (537)
T KOG0274|consen 286 -----------------------------------SLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRG 329 (537)
T ss_pred -----------------------------------EecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEecc
Confidence 6778999999998875 778889999999999999999999996
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC-ce
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS-KL 670 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~-~~ 670 (969)
|.++|.++..+ +.++++|+.|++|++||+.+++++. +.+|...|.++.+... ..+++|+.|++|++||+++. ++
T Consensus 330 h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c 405 (537)
T KOG0274|consen 330 HTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC 405 (537)
T ss_pred ccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh
Confidence 99999999995 7999999999999999999988775 5668899999988766 89999999999999999998 54
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeec-CCCCeEEEEEeCCCCEEEEEeC
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFR-NTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~-~~~~V~sl~fspdg~~LaSgs~ 749 (969)
... ...|..-+..+.+.. .+|++++.|++|++||..+......... +...|..+++. ...+++++.
T Consensus 406 ~~t--------l~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~ 472 (537)
T KOG0274|consen 406 IHT--------LQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSD 472 (537)
T ss_pred hhh--------hcCCccccccccccc---ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEec
Confidence 333 267777777777654 6899999999999999766544444333 55677777765 467999999
Q ss_pred CCcEEEEEcCCCCcc
Q 002086 750 DSQVYVWKREEHRNA 764 (969)
Q Consensus 750 Dg~I~IWdl~t~~~~ 764 (969)
||.+++||+.+++..
T Consensus 473 ~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 473 DGSVKLWDLRSGTLI 487 (537)
T ss_pred CCeeEEEecccCchh
Confidence 999999999986543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-23 Score=235.35 Aligned_cols=422 Identities=18% Similarity=0.203 Sum_probs=290.8
Q ss_pred CCcEEEEeeCCCCcEEEEe--------------------eccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecc
Q 002086 288 LGAFFLIKNLDTGKEFIVN--------------------EYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRR 347 (969)
Q Consensus 288 ~~~~~~i~~ld~g~~~vv~--------------------~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~ 347 (969)
.++.+.|||+.+|+++... -+-.+|. +.+.++..++.|. +| ..--+.|.+|.|+
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~-ViifNlK~dkil~--sF---k~d~g~VtslSFr 253 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGT-VIIFNLKFDKILM--SF---KQDWGRVTSLSFR 253 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCce-EEEEEcccCcEEE--EE---EccccceeEEEec
Confidence 5788999999999887432 2455555 4689999998854 23 3225899999998
Q ss_pred ccccc-ccCCCCcccccccccccccccccccccccceee--eeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcc
Q 002086 348 ENVNR-INDSAGKFSANSYLSKSLRMSKRRGAALLKNIK--GVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNH 424 (969)
Q Consensus 348 ~~~~~-~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~--gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (969)
+++.. ++++..-+...+| ++.+++...-++... ++...-.+.|.+..+... .++.-..
T Consensus 254 tDG~p~las~~~~G~m~~w-----DLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~--------------~DnSlk~ 314 (910)
T KOG1539|consen 254 TDGNPLLASGRSNGDMAFW-----DLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG--------------ADNSLKV 314 (910)
T ss_pred cCCCeeEEeccCCceEEEE-----EcCCCeeeeeeeccccCCcccceecCCCceEeecc--------------CCCceeE
Confidence 77654 4444333445555 455555444444322 233333223333332222 4567777
Q ss_pred eEEEccCCCcccccccceeeeEecccccCEEEEEEe-CCCCEEEEEeCCCcEEEEecccceEEEeecC-------CccCc
Q 002086 425 WVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFS-LDARFLASAGEDRVIHVWEVQECEVMSMSEG-------NLTPI 496 (969)
Q Consensus 425 ~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fS-pDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~-------~~~~v 496 (969)
|+.+...+. .++++.-.||..+-.||.|. .+|.++.+++.|++.+.+++.....-+.+.. .....
T Consensus 315 ~vfD~~dg~-------pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~ 387 (910)
T KOG1539|consen 315 WVFDSGDGV-------PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNV 387 (910)
T ss_pred EEeeCCCCc-------chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccc
Confidence 877643332 34566678999999999998 6889999999999999998753221111000 00000
Q ss_pred c-cccccCCCCCccCCCCCCCCCcccccCCCCCCCCc---ccccceeeecCCCcee-------EeccCCCCEEEEEecC-
Q 002086 497 H-PSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY---VHVPETVFSLSEKPFC-------SFIGHLDDVLDLSWSR- 564 (969)
Q Consensus 497 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~k~~~-------~l~gH~~~I~~l~fs~- 564 (969)
. .............. .......+.+... -......|....+... .++.-...+++++.++
T Consensus 388 ~~~~~~k~p~i~~fa~--------~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C 459 (910)
T KOG1539|consen 388 FSTEKLKLPPIVEFAF--------ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC 459 (910)
T ss_pred cchhhhcCCcceeeec--------ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc
Confidence 0 00000000000000 0000000111000 1111233443333321 1122346788999998
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEe----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLF----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVT 640 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~ 640 (969)
|++.+.|...|+|-+|++++|-....| .|..+|++++... .+..+++++.+|.+++||..+..++........+.
T Consensus 460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~ 538 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT 538 (910)
T ss_pred CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcc
Confidence 999999999999999999999999888 7999999999987 77899999999999999999999888888899999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 641 AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 641 sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
++.++.....++++..|-.|+++|+.+.+... ...+|...|+.++|+|+| .+|++++.|++|++||+....
T Consensus 539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR--------~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR--------EFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred eeeeeehhhhhhhhcCceeEEEEEchhhhhhH--------HhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcc
Confidence 99999999999999999999999998877543 337899999999999999 899999999999999976644
Q ss_pred EEEEeecCCCCeEEEEEeCCCCEEEEEeCC-CcEEEEEcCC
Q 002086 721 HKFRGFRNTSSQISAAFNADGKYIISASED-SQVYVWKREE 760 (969)
Q Consensus 721 ~~~~~~~~~~~V~sl~fspdg~~LaSgs~D-g~I~IWdl~t 760 (969)
. +....-..+++++.|+|+|.+|||...| .-|++|--.+
T Consensus 610 l-ID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 610 L-IDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred e-eeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 3 3444456778999999999999999999 5699998654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=210.87 Aligned_cols=280 Identities=16% Similarity=0.203 Sum_probs=230.3
Q ss_pred CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEE
Q 002086 543 SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVR 620 (969)
Q Consensus 543 ~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~ 620 (969)
..+....+..|+++|.++.|+- +++.++++.|++|++|+...+.+++++ +|...|..++.+. ++..|++|+.|..|.
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQ 84 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEE
Confidence 3445667889999999999997 999999999999999999999999999 8999999999998 899999999999999
Q ss_pred EEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 621 IWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 621 IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
+||+.+|++.. +.+|...|+.+.|+.+...+++|+.|..+++||.+.....+...+ ......|.++....
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil------dea~D~V~Si~v~~--- 155 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL------DEAKDGVSSIDVAE--- 155 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh------hhhcCceeEEEecc---
Confidence 99999998765 566779999999999999999999999999999998765443322 44567788988875
Q ss_pred ceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCc
Q 002086 700 SEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEH 779 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~ 779 (969)
..+++|+.||+++.||++........+ ..+|++++|++|++.++.++.|++|++.|-.+++.+..-+ .+...
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk------Ghkn~ 227 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK------GHKNM 227 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc------ccccc
Confidence 689999999999999988765544433 3469999999999999999999999999999966554322 11111
Q ss_pred eeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCC-
Q 002086 780 FQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEE- 858 (969)
Q Consensus 780 ~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~- 858 (969)
.. -.-+++.....+++++++++.+|.|..........+..|...
T Consensus 228 ey-----------------------------------kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~ 272 (307)
T KOG0316|consen 228 EY-----------------------------------KLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVI 272 (307)
T ss_pred ee-----------------------------------eeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCcee
Confidence 00 012334444557889999999999998888777777777776
Q ss_pred ccccccCCCCCCccccC
Q 002086 859 LSLISHDPGISESFTSN 875 (969)
Q Consensus 859 l~~is~hP~~~~~~~~s 875 (969)
+.+++.||.....|+..
T Consensus 273 v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 273 VTDLSCHPTMDDFITAT 289 (307)
T ss_pred EEeeecccCccceeEec
Confidence 77889999998888773
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-22 Score=236.26 Aligned_cols=256 Identities=14% Similarity=0.223 Sum_probs=192.4
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
|-..|.....++|+..+++++.+..+..|+...+..+..... .++
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~--------------------------------~G~--- 63 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTD--------------------------------YGK--- 63 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccc--------------------------------ccc---
Confidence 455667777888988899999999999998765533221100 000
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc-------EEEEe-ecCCCeEE
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS-------CLKLF-AHNDYVTC 599 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~-------~i~~~-~h~~~V~s 599 (969)
.. .....+.+|.+.|++++|+| +++|++|+.|++|+|||+.++. ++..+ +|...|.+
T Consensus 64 ------------~~-~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~ 130 (493)
T PTZ00421 64 ------------LA-SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI 130 (493)
T ss_pred ------------CC-CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEE
Confidence 00 00124779999999999998 5799999999999999997653 33334 89999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEEE-ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW-TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
++|+|..+++|++++.|++|+|||+.+++.+.. ..|...|.+++|+|+|.+|++++.|+.|+|||+++++.....
T Consensus 131 l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl---- 206 (493)
T PTZ00421 131 VSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV---- 206 (493)
T ss_pred EEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE----
Confidence 999994457999999999999999998876654 457788999999999999999999999999999988754332
Q ss_pred cccccCCCC-CeEEEEEcCCCCceEEEEe----CCCcEEEEeCCcceEEEEe--ecCCCCeEEEEEeCCCCEEEEEe-CC
Q 002086 679 QTKKKSSTR-KITGFQFSPSNPSEVLVTS----ADSRIRILDGLDIVHKFRG--FRNTSSQISAAFNADGKYIISAS-ED 750 (969)
Q Consensus 679 ~~~~~~h~~-~It~l~fspd~~~~l~sgs----~Dg~I~IwD~~~~~~~~~~--~~~~~~V~sl~fspdg~~LaSgs-~D 750 (969)
..|.. .+..+.|.+++. .+++++ .|+.|++||.++....+.. ......+....|++++.+|++++ .|
T Consensus 207 ----~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 207 ----EAHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred ----ecCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC
Confidence 34443 345678888774 555443 4799999998764433322 22334455678999999999888 49
Q ss_pred CcEEEEEcCCCC
Q 002086 751 SQVYVWKREEHR 762 (969)
Q Consensus 751 g~I~IWdl~t~~ 762 (969)
+.|++||+.+++
T Consensus 282 g~Iriwdl~~~~ 293 (493)
T PTZ00421 282 GNIRCFELMNER 293 (493)
T ss_pred CeEEEEEeeCCc
Confidence 999999998743
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-24 Score=231.72 Aligned_cols=302 Identities=16% Similarity=0.236 Sum_probs=210.4
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEe----e-cCCccCcccccccCC-CCCccCCCCCCC
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSM----S-EGNLTPIHPSLCNSS-DKASSLDGSSPN 516 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~----~-~~~~~~v~~~~~~~~-~~~~~~~g~~~~ 516 (969)
.-..|++|+..|.++++.|.|-.|+|||.|.+|++||+........ + ......+..+.+... +..+.+.|....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 3455899999999999999999999999999999999875332111 0 111112222222222 112222222222
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc-EEEEe--
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS-CLKLF-- 591 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~-~i~~~-- 591 (969)
...+.... ....+......+ .-+...+||...++|.+|+| .+.|+|++.||+++|||+...+ .+.++
T Consensus 239 kl~DRdG~---~~~e~~KGDQYI-----~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 239 KLLDRDGF---EIVEFSKGDQYI-----RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred eEEccCCc---eeeeeeccchhh-----hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 11110000 000011110011 11224579999999999999 6899999999999999998644 34444
Q ss_pred ----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE----EEEecCCC--CEEEEEEccCCCEEEEEeCCCcEE
Q 002086 592 ----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV----VDWTDLHE--MVTAACYTPDGQNALIGSHKGSCR 661 (969)
Q Consensus 592 ----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~----~~~~~~~~--~V~sv~fspdg~~Lasgs~dg~I~ 661 (969)
+..-+++.++|++ ++..|++|+.||.|.+|+.....+ .....|.. .|+||.|+++|++|++-+.|++++
T Consensus 311 k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred ccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 2345789999999 999999999999999999865422 22334444 799999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe------CCCcEEEEeCCcceEEEEeecCCCCeEEE
Q 002086 662 LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS------ADSRIRILDGLDIVHKFRGFRNTSSQISA 735 (969)
Q Consensus 662 IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs------~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl 735 (969)
+||++..+....... ......+-+.++|+|+. .+|++|. ..+.+++||..+...+++.......|..+
T Consensus 390 vWDLrq~kkpL~~~t-----gL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~ 463 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRT-----GLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRC 463 (641)
T ss_pred eeeccccccchhhhc-----CCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEE
Confidence 999998764321111 12334566789999998 7888874 35679999988887777777778889999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 736 AFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 736 ~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.|+|.-+.|+.|+.||+++||==.
T Consensus 464 ~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 464 LWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eecchhhheeeecCCCceEEEECc
Confidence 999998889999999999987433
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-24 Score=227.99 Aligned_cols=248 Identities=24% Similarity=0.342 Sum_probs=213.7
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
..+..+|.|-.+.|+.++|.+++++++.++.|+.+++|++...+...
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~--------------------------------- 255 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH--------------------------------- 255 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh---------------------------------
Confidence 34677889999999999999999999999999999999998755433
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS-HLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTC 599 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~-~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~s 599 (969)
+|.||++.|+++.|..+ ..+++|+.|.+|++||+....|.+++-....+..
T Consensus 256 ----------------------------TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnD 307 (459)
T KOG0288|consen 256 ----------------------------TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCND 307 (459)
T ss_pred ----------------------------hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccc
Confidence 67889999999999884 4499999999999999999999999877788888
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
|... ...+++|-.|++|++||+++..+.......+.|+++..+++|..|++++.|.++.+.|+++..........
T Consensus 308 I~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~-- 382 (459)
T KOG0288|consen 308 IVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE-- 382 (459)
T ss_pred eEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc--
Confidence 8875 57799999999999999999999888888889999999999999999999999999999998876554322
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFR--NTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~--~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
........+.+.|+|++ .++++|+.||.|+||++.+......... ....|++++|+|.|.+|++++.++.+.+|.
T Consensus 383 --g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 383 --GFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred --ccccccccceeEECCCC-ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 12223448999999998 8999999999999999776555544433 333699999999999999999999999993
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=221.09 Aligned_cols=506 Identities=17% Similarity=0.181 Sum_probs=309.7
Q ss_pred CCcEEEEeeCCCC----------cEEEEeeccCCCcee-----------EEEecCCCceeeeeehhhccCCCcceeeeec
Q 002086 288 LGAFFLIKNLDTG----------KEFIVNEYSENGMWN-----------KLSDLQTGKQLTMEEFEKSVGHSPVVKELMR 346 (969)
Q Consensus 288 ~~~~~~i~~ld~g----------~~~vv~~~~~dg~~~-----------~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~ 346 (969)
.+=++.++|.+.. +.+.+..|+++|+++ +||++++--++ ..+.-|.=.|.+++|
T Consensus 56 AGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vV-----AEfvdHKY~vtcvaF 130 (1080)
T KOG1408|consen 56 AGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVV-----AEFVDHKYNVTCVAF 130 (1080)
T ss_pred cCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccch-----hhhhhccccceeeee
Confidence 3445666666633 445566788888887 99999998873 445889999999998
Q ss_pred ccccccccCCC--CcccccccccccccccccccccccceeeeeEEEeeecCCccc--------------------cCCCC
Q 002086 347 RENVNRINDSA--GKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKEC--------------------INPNP 404 (969)
Q Consensus 347 ~~~~~~~~t~s--~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~--------------------~~~~~ 404 (969)
......+++.+ -|+.++.|. |+..... .-..+..++..++|+.|... -++-|
T Consensus 131 sp~~kyvvSVGsQHDMIVnv~d---Wr~N~~~---asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiP 204 (1080)
T KOG1408|consen 131 SPGNKYVVSVGSQHDMIVNVND---WRVNSSG---ASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIP 204 (1080)
T ss_pred cCCCcEEEeeccccceEEEhhh---hhhcccc---cccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCcc
Confidence 66555555433 344566664 3333221 23445566666666666532 11222
Q ss_pred cccchHHHHHHhhccccCcceEEEc-------------cCCCcccccccceeeeEe-cccccCEEEEEEeCCCCEEEEEe
Q 002086 405 LLGDQREQKEQKQNKNVSNHWVKVR-------------QSGKSYKDLSALHLCQEI-QAHEGSIWTIKFSLDARFLASAG 470 (969)
Q Consensus 405 l~~~~~~~~~~~~~~~~~~~~v~v~-------------~~~~~l~dl~~~~l~~~L-~gH~~~I~~l~fSpDg~~LaTgs 470 (969)
+++-..... .---+.|.-+. .....+.++...+++-.+ +--+..-.||+.+ .++++.|+
T Consensus 205 l~gRs~~lg-----~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgC 277 (1080)
T KOG1408|consen 205 LPGRSYFLG-----NLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGC 277 (1080)
T ss_pred ccchhhhcc-----ccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--cceEEEee
Confidence 221100000 00000010000 000001111111111100 0113334566665 67999999
Q ss_pred CCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEe
Q 002086 471 EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSF 550 (969)
Q Consensus 471 ~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l 550 (969)
.+|+|+||+-.+.+.+.++...... ......+.. ++..+.. .-
T Consensus 278 a~g~vrlFnp~tL~y~~Tlpr~hal----------g~d~a~~~q---------------------~~~~~s~------~~ 320 (1080)
T KOG1408|consen 278 AKGMVRLFNPETLDYAGTLPRSHAL----------GSDTANLSQ---------------------PEPKNSE------SS 320 (1080)
T ss_pred ccceeeecCcchhhhcccccccccc----------ccchhhccc---------------------ccccccc------cC
Confidence 9999999998876665543321000 000000000 0000000 00
Q ss_pred ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC----CcEEEEeecCCCeEEEEEecC----------CCCEEEEEEC
Q 002086 551 IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET----KSCLKLFAHNDYVTCIQFNPM----------DDDYFISGSL 615 (969)
Q Consensus 551 ~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t----~~~i~~~~h~~~V~sv~fsp~----------~~~~L~sgs~ 615 (969)
.+---...++.|.+ .+.|...-.|..++|||++. +++...+-|...|+.|...|- -...|++++.
T Consensus 321 ~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs 400 (1080)
T KOG1408|consen 321 PAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSS 400 (1080)
T ss_pred cccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecC
Confidence 01112345778887 78888889999999999976 455566689999998877661 1346999999
Q ss_pred CCeEEEEeCCCc---eEE-----------------------------------EEecCCCCEEEEEEccCCCEEEEEeCC
Q 002086 616 DAKVRIWSISDR---LVV-----------------------------------DWTDLHEMVTAACYTPDGQNALIGSHK 657 (969)
Q Consensus 616 Dg~I~IWDl~~~---~~~-----------------------------------~~~~~~~~V~sv~fspdg~~Lasgs~d 657 (969)
|++|++||+..+ .+. ...+....+.+++.+|+|++|++|..-
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 999999999652 110 112223459999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC--CCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEE
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS--NPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQIS 734 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd--~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~s 734 (969)
|+++||++....... ....|...|.|+.|+.- +..+|++++.|.-|.|||.... ...-..-.|...|++
T Consensus 481 GnlrVy~Lq~l~~~~--------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTC--------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred CceEEEEehhhhhhh--------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence 999999998766432 23789999999999852 2368999999999999996543 222334456888999
Q ss_pred EEEeCCC--CEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCC---ceeeeeeEEeecCCCcc-cCCCCCccEEEcc
Q 002086 735 AAFNADG--KYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHE---HFQCKDVSVAIPWPGMV-KGEPPPTPVQTKK 808 (969)
Q Consensus 735 l~fspdg--~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~---~~~~~~~s~~~~w~~~i-~G~~~~~~v~~~~ 808 (969)
+.|--.| ..+++++.|..|.+=-... ...+ .++.+++. +-+--+..+...|..++ .+++..+.++...
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk---~~~g---~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~ 626 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQK---ASSG---RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE 626 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhcc---ccCc---eeccccccccccceEEEeeeCCCcceEEEEecccceEEEecc
Confidence 9998877 7899999998876432221 1112 22222222 11222444455554444 3466666666555
Q ss_pred cccc---------cCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCCcccc
Q 002086 809 HAKR---------ISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLI 862 (969)
Q Consensus 809 ~~~~---------~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~i 862 (969)
.+|+ ..+...-...-|.|.++++-..+..|-.+..-++....++++|.|-+.++
T Consensus 627 sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 627 SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred ccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee
Confidence 5543 34566667778999999999999999999999998888888888876544
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-24 Score=213.98 Aligned_cols=288 Identities=17% Similarity=0.279 Sum_probs=238.7
Q ss_pred eeEecccccCEEEEEEeC---CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 444 CQEIQAHEGSIWTIKFSL---DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSp---Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
-.+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi---------------------------------- 52 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI---------------------------------- 52 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE----------------------------------
Confidence 345789999999999996 8999999999997766655554333
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTC 599 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~s 599 (969)
.+|.||.+.|+...... ...-++++.|-+.+|||.-+|..+..|.|..-|.+
T Consensus 53 ---------------------------gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~ 105 (334)
T KOG0278|consen 53 ---------------------------GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKA 105 (334)
T ss_pred ---------------------------EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeee
Confidence 37889999999999987 46778899999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
++|+. +.++|++|+.+..++|||++.. .+..+.+|...|..+.|....+.|++...|++||+||.+++...+...+
T Consensus 106 ~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~- 183 (334)
T KOG0278|consen 106 VAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF- 183 (334)
T ss_pred EEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-
Confidence 99999 9999999999999999999865 4667888999999999999999999999999999999999988766433
Q ss_pred ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
..+|+++.++++| .+++....+.|.+||..... .++...-+..|.+.+++|+..++++|++|+.++.||
T Consensus 184 --------~s~VtSlEvs~dG--~ilTia~gssV~Fwdaksf~-~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 184 --------NSPVTSLEVSQDG--RILTIAYGSSVKFWDAKSFG-LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFD 252 (334)
T ss_pred --------CCCCcceeeccCC--CEEEEecCceeEEecccccc-ceeeccCccccccccccCCCceEEecCcceEEEEEe
Confidence 5679999999997 67888888999999965432 344455567789999999999999999999999999
Q ss_pred cCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCc
Q 002086 758 REEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRL 837 (969)
Q Consensus 758 l~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~ 837 (969)
+.+++.+.. ....++..+. +..|||+|+..+++++|+.
T Consensus 253 y~TgeEi~~-----~nkgh~gpVh-------------------------------------cVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 253 YNTGEEIGS-----YNKGHFGPVH-------------------------------------CVRFSPDGELYASGSEDGT 290 (334)
T ss_pred ccCCceeee-----cccCCCCceE-------------------------------------EEEECCCCceeeccCCCce
Confidence 999543221 0122222222 3457999999999999999
Q ss_pred cccCCCCCCc
Q 002086 838 LPPLPKKTNK 847 (969)
Q Consensus 838 L~~~~~~s~~ 847 (969)
+..|....++
T Consensus 291 irlWQt~~~~ 300 (334)
T KOG0278|consen 291 IRLWQTTPGK 300 (334)
T ss_pred EEEEEecCCC
Confidence 9999876554
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-23 Score=217.38 Aligned_cols=253 Identities=19% Similarity=0.332 Sum_probs=205.0
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
|.+.|.++... +++++||+.||+++|||.. |
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-G---------------------------------------------- 134 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-G---------------------------------------------- 134 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecC-C----------------------------------------------
Confidence 99999999988 7899999999999999975 2
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-C---cEEEEEeCCCcEEEEECCCCcEEE-----EeecCCCeEEE
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-S---HLLLSSSMDKTVRLWDMETKSCLK-----LFAHNDYVTCI 600 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~---~~L~Sgs~DgtV~IWDl~t~~~i~-----~~~h~~~V~sv 600 (969)
+....+.||.++|.+++|.. + ..|++++.|.++++|.++.++... ..+|...|.+|
T Consensus 135 ---------------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV 199 (423)
T KOG0313|consen 135 ---------------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV 199 (423)
T ss_pred ---------------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE
Confidence 22346789999999998864 3 469999999999999998776432 12899999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCc--------------------------eEEEEecCCCCEEEEEEccCCCEEEEE
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDR--------------------------LVVDWTDLHEMVTAACYTPDGQNALIG 654 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~--------------------------~~~~~~~~~~~V~sv~fspdg~~Lasg 654 (969)
...+ ++..|++|+.|.+|+||+..+. .++.+.+|..+|.++.|++ ...++++
T Consensus 200 sv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~ 277 (423)
T KOG0313|consen 200 SVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSV 277 (423)
T ss_pred EecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEee
Confidence 9999 9999999999999999993210 2346778889999999998 6789999
Q ss_pred eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---eEEEEeecCCCC
Q 002086 655 SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---VHKFRGFRNTSS 731 (969)
Q Consensus 655 s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~~~~~~ 731 (969)
+.|.+|+.||+.++..... ......++++.++|.. .+|++|+.|..|++||.+.. ........|...
T Consensus 278 SwDHTIk~WDletg~~~~~---------~~~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw 347 (423)
T KOG0313|consen 278 SWDHTIKVWDLETGGLKST---------LTTNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW 347 (423)
T ss_pred cccceEEEEEeecccceee---------eecCcceeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence 9999999999999886544 2345779999999977 89999999999999997642 333444556778
Q ss_pred eEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeee
Q 002086 732 QISAAFNADG-KYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCK 783 (969)
Q Consensus 732 V~sl~fspdg-~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~ 783 (969)
|.++.|+|.. ..|++|+.|+++++||+++.+ .+++...++.+.+.|.
T Consensus 348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k-----~plydI~~h~DKvl~v 395 (423)
T KOG0313|consen 348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK-----APLYDIAGHNDKVLSV 395 (423)
T ss_pred hhheecCCCCceEEEEEecCCeEEEEEeccCC-----CcceeeccCCceEEEE
Confidence 9999999955 568899999999999999832 2556666665544433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=233.83 Aligned_cols=251 Identities=17% Similarity=0.228 Sum_probs=185.5
Q ss_pred EecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 446 EIQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
.|.||.+.|++++|+| ++++||||+.|++|+|||+.++....
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~------------------------------------- 112 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ------------------------------------- 112 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-------------------------------------
Confidence 4789999999999999 88999999999999999987532210
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
....++..+.+|...|.+++|+| +++|++|+.|++|+|||+.+++.+..+ .|...|.+++
T Consensus 113 -----------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 113 -----------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred -----------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 01124457889999999999998 369999999999999999999988777 6999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEEE-ecCCCC-EEEEEEccCCCEEEEEe----CCCcEEEEEcCCCceeeeee
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDW-TDLHEM-VTAACYTPDGQNALIGS----HKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-~~~~~~-V~sv~fspdg~~Lasgs----~dg~I~IwDl~~~~~~~~~~ 675 (969)
|+| ++.+|++++.|++|+|||+++++.+.. ..|... +..+.|.+++..+++++ .|+.|++||++........
T Consensus 176 ~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~- 253 (493)
T PTZ00421 176 WNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST- 253 (493)
T ss_pred EEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE-
Confidence 999 999999999999999999998876544 445443 45778899888877654 4789999999875422110
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
. .......+....|++++ .+|++++ .|+.|++||+.+....+. .+.....+..++|.|.-..=+..+ -..
T Consensus 254 ~-----~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~~~--Ei~ 325 (493)
T PTZ00421 254 V-----DLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTRKC--EIA 325 (493)
T ss_pred e-----ccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccccccccce--eee
Confidence 0 01233456667788887 5666665 699999999775443332 223444567788887532222222 234
Q ss_pred EEEEcCC
Q 002086 754 YVWKREE 760 (969)
Q Consensus 754 ~IWdl~t 760 (969)
++|.+..
T Consensus 326 r~~~l~~ 332 (493)
T PTZ00421 326 RFYALTY 332 (493)
T ss_pred EEEEecC
Confidence 6666643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-22 Score=232.84 Aligned_cols=256 Identities=16% Similarity=0.245 Sum_probs=186.8
Q ss_pred ceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
...+..|.+|.+.|++++|+|+ +.+||||+.|++|+|||+.++.....
T Consensus 64 ~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~------------------------------- 112 (568)
T PTZ00420 64 KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK------------------------------- 112 (568)
T ss_pred CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------------------------
Confidence 3457789999999999999996 78999999999999999875321000
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEeecCCCe
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFAHNDYV 597 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V 597 (969)
....++..+.+|...|.+++|+| +. +|++++.|++|+|||+.+++.+..+.|...|
T Consensus 113 ----------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V 170 (568)
T PTZ00420 113 ----------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKL 170 (568)
T ss_pred ----------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcE
Confidence 00123446788999999999999 54 5679999999999999999988777788899
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEE-----EEEEccCCCEEEEEeCCC----cEEEEEcCC
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVT-----AACYTPDGQNALIGSHKG----SCRLYSIED 667 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~-----sv~fspdg~~Lasgs~dg----~I~IwDl~~ 667 (969)
.+++|+| ++.+|++++.|+.|+|||+++++++. +..|.+.+. ...|++++.+|++++.++ .|+|||++.
T Consensus 171 ~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 171 SSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 9999999 99999999999999999999987665 445655433 234568889999887764 799999996
Q ss_pred C-ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEE
Q 002086 668 S-KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYII 745 (969)
Q Consensus 668 ~-~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~La 745 (969)
. +......+ ..+...+... |.++.+.++++|+.|++|++|+.... ...+..+.+..++.+++|.|....=+
T Consensus 250 ~~~pl~~~~l------d~~~~~L~p~-~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~~dv 322 (568)
T PTZ00420 250 TTSALVTMSI------DNASAPLIPH-YDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQICDV 322 (568)
T ss_pred CCCceEEEEe------cCCccceEEe-eeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccccCc
Confidence 3 33222111 2223333333 33444488999999999999997543 34444555667788999999654322
Q ss_pred EEeCCCcEEEEEcC
Q 002086 746 SASEDSQVYVWKRE 759 (969)
Q Consensus 746 Sgs~Dg~I~IWdl~ 759 (969)
..++ ..++|.+.
T Consensus 323 ~~cE--i~R~~kl~ 334 (568)
T PTZ00420 323 YKCE--IGRVYKNE 334 (568)
T ss_pred hhhh--HhHHhhhc
Confidence 2222 34555554
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=239.02 Aligned_cols=270 Identities=25% Similarity=0.374 Sum_probs=209.3
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+++.++..|.+.|+|+.|++||++||+||.|+.|.||+.... .... ..|.....
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~-~~~~---------------------~fgs~g~~--- 113 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI-GSGT---------------------VFGSTGGA--- 113 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc-CCcc---------------------cccccccc---
Confidence 3566778899999999999999999999999999999997641 0000 00000000
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVT 598 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~ 598 (969)
......+.+..+.+|...|.+++|+| +.+|++++.|++|.|||..+.++++++ +|...|.
T Consensus 114 ------------------~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK 175 (942)
T KOG0973|consen 114 ------------------KNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK 175 (942)
T ss_pred ------------------cccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc
Confidence 00012345678999999999999999 899999999999999999999988887 8999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec-------CCCCEEEEEEccCCCEEEEEeC----CCcEEEEEcCC
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD-------LHEMVTAACYTPDGQNALIGSH----KGSCRLYSIED 667 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~-------~~~~V~sv~fspdg~~Lasgs~----dg~I~IwDl~~ 667 (969)
.+.|.| -+.||++-+.|++|+||.+.+-.+.+... .....+.+.|+|||++|++.-. ..++.|.+-.+
T Consensus 176 Gvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t 254 (942)
T KOG0973|consen 176 GVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT 254 (942)
T ss_pred ceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence 999999 99999999999999999976644433322 2244789999999999998532 23677776655
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCC----CCc------------eEEEEeCCCcEEEEeCCcceEEEEeec-CCC
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPS----NPS------------EVLVTSADSRIRILDGLDIVHKFRGFR-NTS 730 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd----~~~------------~l~sgs~Dg~I~IwD~~~~~~~~~~~~-~~~ 730 (969)
.+.. ....+|..++.++.|+|. ... .+++|+.|++|-||........+..+. ...
T Consensus 255 Wk~~--------~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 255 WKVD--------KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred ceee--------eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 4422 223789999999999982 111 678899999999999765554444332 346
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 731 SQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 731 ~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
.|..++|+|||-.|+.++.||+|.+..+++.+
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 79999999999999999999999999998753
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=236.03 Aligned_cols=236 Identities=21% Similarity=0.383 Sum_probs=204.8
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
|...|.+..|. ..++++++.|++|++||..++..+..
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~----------------------------------------- 243 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT----------------------------------------- 243 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe-----------------------------------------
Confidence 67778999998 56899999999999999988776541
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDD 607 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~ 607 (969)
.+.||.+.|++++|.. +.+|++|+.|.++++||+.+++|..++ +|...|.++... +
T Consensus 244 -------------------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~---~ 301 (537)
T KOG0274|consen 244 -------------------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID---P 301 (537)
T ss_pred -------------------eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc---C
Confidence 4789999999999987 899999999999999999999999998 799999999984 5
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC
Q 002086 608 DYFISGSLDAKVRIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST 686 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~ 686 (969)
.++++|+.|.+|++|++.++..+.+.. |..+|.++.++ +.++++|+.|++|++||+.+++++... .+|.
T Consensus 302 ~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl--------~gH~ 371 (537)
T KOG0274|consen 302 FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL--------SGHT 371 (537)
T ss_pred ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeee--------cCCc
Confidence 889999999999999999999998888 99999999998 789999999999999999988765543 7799
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 002086 687 RKITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
..|+++.+.+. ..+++|+.|++|++||..+. .+......|...+..+ ...+++|++++.|+.|++||..+++++
T Consensus 372 ~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 372 GRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred ceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeEeccccccEEEeecccCcee
Confidence 99999988874 58999999999999998876 5555555555555444 346789999999999999999985443
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=207.98 Aligned_cols=246 Identities=22% Similarity=0.329 Sum_probs=199.2
Q ss_pred ccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccc-eEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 449 AHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQEC-EVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 449 gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
.-++.|.+|+||| ...+|+.+|.|++||+|+++.. ....
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--------------------------------------- 65 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--------------------------------------- 65 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc---------------------------------------
Confidence 4578999999999 5567779999999999999752 2111
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecC
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM 605 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~ 605 (969)
+....|.++|.+++|+. +..+++|+.|+.+++||+.+++...+-.|.++|.++.|-+
T Consensus 66 ---------------------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~- 123 (347)
T KOG0647|consen 66 ---------------------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP- 123 (347)
T ss_pred ---------------------hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-
Confidence 13456999999999998 8999999999999999999999999999999999999987
Q ss_pred CCC--EEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 606 DDD--YFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 606 ~~~--~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
... .|++|+.|.+|+.||.+....+......+.++++..- ..+++++..+..|.+|++++..... .....
T Consensus 124 ~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~------k~~~S 195 (347)
T KOG0647|consen 124 GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEF------KRIES 195 (347)
T ss_pred CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchh------hhhcC
Confidence 444 8999999999999999999999999999988888765 3588899999999999998764321 11112
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc----ceEEEEeecC-------CCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD----IVHKFRGFRN-------TSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~----~~~~~~~~~~-------~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
...-.+.|++..++. ...+.|+-+|.+.|..+.. ....|+.|.. -..|++++|+|.-..|+|++.||+
T Consensus 196 pLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 196 PLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT 274 (347)
T ss_pred cccceeeEEEEEecC-CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce
Confidence 344567888888877 5669999999998887543 2345555653 235778999999999999999999
Q ss_pred EEEEEcCCCCcc
Q 002086 753 VYVWKREEHRNA 764 (969)
Q Consensus 753 I~IWdl~t~~~~ 764 (969)
+.+||-+....+
T Consensus 275 f~FWDkdar~kL 286 (347)
T KOG0647|consen 275 FSFWDKDARTKL 286 (347)
T ss_pred EEEecchhhhhh
Confidence 999998864433
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-24 Score=223.69 Aligned_cols=287 Identities=16% Similarity=0.289 Sum_probs=221.0
Q ss_pred eeeeEecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
-++..|.||.+.|.|++=+|.. ..+|||+.||.|+|||+...+++..++.+...+..+.+.........++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdD-------- 128 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDD-------- 128 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCC--------
Confidence 3456689999999999999976 6899999999999999999888888777766665555444111110000
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVT 598 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~ 598 (969)
...+.|.+.+.+..++.+ ...+..|..+. ++.++|++.+ |-|||.....++..+. ..+.|.
T Consensus 129 --------------KtvK~wk~~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~ 191 (433)
T KOG0268|consen 129 --------------KTVKQWKIDGPPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSIS 191 (433)
T ss_pred --------------cceeeeeccCCcceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCcee
Confidence 011233344445555544 34466677665 6788888764 8899998888888774 456799
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
++.|+|.....|++|+.|+.|.+||++.+.++......-.-+.|+|+|.+-.|++|.+|..++.||++......
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~------ 265 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL------ 265 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccc------
Confidence 99999987888999999999999999999888777777777899999988889999999999999998765321
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
....+|...|..+.|+|.| +.+++|+.|.+|+||........-.- ...-..|.++.||-|.+|+++|+.|+.|++|.
T Consensus 266 -~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 266 -NVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred -hhhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 1227899999999999999 89999999999999986543221111 12235689999999999999999999999999
Q ss_pred cCCC
Q 002086 758 REEH 761 (969)
Q Consensus 758 l~t~ 761 (969)
....
T Consensus 344 a~As 347 (433)
T KOG0268|consen 344 AKAS 347 (433)
T ss_pred cchh
Confidence 8753
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=228.35 Aligned_cols=252 Identities=20% Similarity=0.301 Sum_probs=209.7
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
+-..........-++..|+++.|+++|.+||.|..+|.|.|||..+.+.+.
T Consensus 203 ~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~----------------------------- 253 (484)
T KOG0305|consen 203 SASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR----------------------------- 253 (484)
T ss_pred ecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc-----------------------------
Confidence 333333344444458999999999999999999999999999988654433
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEecc-CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEE-e-ec
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIG-HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKL-F-AH 593 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~g-H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~-~-~h 593 (969)
.+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+.... + +|
T Consensus 254 --------------------------------~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H 300 (484)
T KOG0305|consen 254 --------------------------------TLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGH 300 (484)
T ss_pred --------------------------------cccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcc
Confidence 3444 89999999999 68999999999999999998775544 3 79
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEEEEecCCCCEEEEEEccC-CCEEEEE--eCCCcEEEEEcCCCc
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPD-GQNALIG--SHKGSCRLYSIEDSK 669 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~~~~~~V~sv~fspd-g~~Lasg--s~dg~I~IwDl~~~~ 669 (969)
...|..+.|++ ++.+|++|+.|+.+.|||... ..++.+..|...|.+++|+|- ...||+| +.|++|++||+.++.
T Consensus 301 ~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 301 RQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred cceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 99999999999 999999999999999999955 456678889999999999994 5577774 579999999999888
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE--eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT--SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg--s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
.... ......|..|.|++.. ..|+++ ..+..|.||+............|...|..++++|||.++++|
T Consensus 380 ~i~~---------vdtgsQVcsL~Wsk~~-kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 380 RIDS---------VDTGSQVCSLIWSKKY-KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred Eecc---------cccCCceeeEEEcCCC-CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 7544 3456789999999987 445544 456789999977766666667788889999999999999999
Q ss_pred eCCCcEEEEEcCCC
Q 002086 748 SEDSQVYVWKREEH 761 (969)
Q Consensus 748 s~Dg~I~IWdl~t~ 761 (969)
+.|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999999764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-23 Score=211.15 Aligned_cols=217 Identities=19% Similarity=0.363 Sum_probs=177.2
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceE----EEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEV----MSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~----l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
..+..|.+++.+.+|++||.++|||+.|..|+|.|++..-. ..+..+..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~--------------------------- 158 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDT--------------------------- 158 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCc---------------------------
Confidence 44778999999999999999999999999999999873110 00000000
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc---EEEEeecCCC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS---CLKLFAHNDY 596 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~---~i~~~~h~~~ 596 (969)
......+.+|..|.++|.++.|+| ...|++|+.|++|++||+.... ..+.|....+
T Consensus 159 --------------------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~ 218 (430)
T KOG0640|consen 159 --------------------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEP 218 (430)
T ss_pred --------------------ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccce
Confidence 001234568899999999999999 8999999999999999997643 3345678889
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE----ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW----TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~----~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
|.+|.|+| .|.+|++|..-.++++||+.+-++... ..|.+.|+++.+++.|++.++|+.||.|+|||--.++++.
T Consensus 219 vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 219 VRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR 297 (430)
T ss_pred eeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH
Confidence 99999999 999999999999999999999877643 4566889999999999999999999999999988877654
Q ss_pred eeeeeecccccCC-CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 673 LNQVDFQTKKKSS-TRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 673 ~~~~~~~~~~~~h-~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
... ..| ...|.+..|..++ .++++.+.|..+++|.+.
T Consensus 298 t~~-------~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 298 TIG-------NAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEIS 335 (430)
T ss_pred HHH-------hhcCCceeeeEEEccCC-eEEeecCCcceeeeeeec
Confidence 321 334 4578889999987 899999999999999854
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=229.22 Aligned_cols=205 Identities=15% Similarity=0.200 Sum_probs=158.4
Q ss_pred eeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc--------EEEE-eecCCCeEEEEEecCCCC-EEEEEE
Q 002086 547 FCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS--------CLKL-FAHNDYVTCIQFNPMDDD-YFISGS 614 (969)
Q Consensus 547 ~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~--------~i~~-~~h~~~V~sv~fsp~~~~-~L~sgs 614 (969)
+..+.+|.+.|.+++|+| +.+|++|+.|++|+|||+.++. ++.. .+|...|.+++|+| ++. +|++++
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaSgS 145 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCSSG 145 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEEEe
Confidence 346789999999999998 5799999999999999998642 2223 37999999999999 565 567899
Q ss_pred CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEE---
Q 002086 615 LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG--- 691 (969)
Q Consensus 615 ~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~--- 691 (969)
.|++|+|||+++++......+...|.+++|+|+|.+|++++.|+.|+|||+++++..... .+|.+.+..
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl--------~gH~g~~~s~~v 217 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF--------HIHDGGKNTKNI 217 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE--------ecccCCceeEEE
Confidence 999999999999887665567788999999999999999999999999999998765332 445554432
Q ss_pred --EEEcCCCCceEEEEeCCC----cEEEEeCCcc---eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 692 --FQFSPSNPSEVLVTSADS----RIRILDGLDI---VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 692 --l~fspd~~~~l~sgs~Dg----~I~IwD~~~~---~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
..|++++ .+|++++.|+ +|+|||.+.. ............+......++|.++++|+.|+.|++|++..+
T Consensus 218 ~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 218 WIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 3355776 6788777664 7999997742 333333333333333444556899999999999999999763
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=223.59 Aligned_cols=245 Identities=22% Similarity=0.454 Sum_probs=205.9
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
..+..|.+.|..+.|-++...|+|||.|..|++|++...+.
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~--------------------------------------- 209 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS--------------------------------------- 209 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------------------------------
Confidence 44778999999999999988999999999999999874331
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQF 602 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~f 602 (969)
..+.+|.|..+.|+.+.|.+ +.++++++.|+.+++|++...+...++ +|++.|+++.|
T Consensus 210 --------------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~ 269 (459)
T KOG0288|consen 210 --------------------ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKF 269 (459)
T ss_pred --------------------hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehh
Confidence 01225677889999999987 899999999999999999999998887 89999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
.. ....+++|+.|.+|++||+....+....-....+..|+.+ ...+++|-.|+.|++||++...+....
T Consensus 270 ~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv-------- 338 (459)
T KOG0288|consen 270 KL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV-------- 338 (459)
T ss_pred hc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEe--------
Confidence 87 5556999999999999999998877766666667777776 567888999999999999998875542
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEE--eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFR--GFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~--~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
...+.|+++..++++ ..|++++.|.++.+.|++. ....+. ++......+.+.|||++.|+++|+.||.|+||++
T Consensus 339 -~~gg~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 339 -PLGGRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred -ecCcceeeEeeccCC-eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 234589999999988 7888889999999999765 333343 3344455889999999999999999999999999
Q ss_pred CCC
Q 002086 759 EEH 761 (969)
Q Consensus 759 ~t~ 761 (969)
.++
T Consensus 417 ~tg 419 (459)
T KOG0288|consen 417 FTG 419 (459)
T ss_pred cCc
Confidence 984
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=218.30 Aligned_cols=236 Identities=23% Similarity=0.365 Sum_probs=195.8
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
++|...|.+++.|+||+|||||+.|..|.||+.++++.++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---------------------------------------- 238 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK---------------------------------------- 238 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh----------------------------------------
Confidence 3899999999999999999999999999999998765543
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecC
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPM 605 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~ 605 (969)
.+.+|.+.|.+++|-. .+.|++++.|++|++|+++....+.++ +|.+.|.+|....
T Consensus 239 ---------------------~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~- 296 (479)
T KOG0299|consen 239 ---------------------VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS- 296 (479)
T ss_pred ---------------------cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-
Confidence 5778999999999987 689999999999999999988877654 9999999999886
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc----
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK---- 681 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~---- 681 (969)
.+..+-+|+.|.++++|++.....+.+.++...+-|++|-.+ ..|++|+.+|.|.+|++...+++..........
T Consensus 297 reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~ 375 (479)
T KOG0299|consen 297 RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELD 375 (479)
T ss_pred ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCcc
Confidence 566666677999999999988888888888889999999865 689999999999999999887765443321111
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---eEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---VHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
...+...|++++..|.. .++++|+.+|.|++|.+... ...+....-.+.|++++|+++|+.|++|
T Consensus 376 ~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 376 PVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccccceeeeEecccC-ceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 01223489999999966 89999999999999986654 3344444466779999999999977666
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-20 Score=201.31 Aligned_cols=402 Identities=17% Similarity=0.220 Sum_probs=270.5
Q ss_pred ccCCcEEEEeeCCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccc-
Q 002086 286 SRLGAFFLIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANS- 364 (969)
Q Consensus 286 ~~~~~~~~i~~ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~- 364 (969)
=|.+-..-+|-+-+|+.+.-.. ....|++++...| +...||+..|.++....+..++++|-.-..-..
T Consensus 63 RG~dcR~Nly~lptgE~vyfvA-----~V~Vl~n~ee~~Q------r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~ 131 (626)
T KOG2106|consen 63 RGVDCRNNLYLLPTGELVYFVA-----AVGVLYNWEERSQ------RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRP 131 (626)
T ss_pred cceeeeceeEEccCccEEEEec-----cEEEEEeehhhhc------ccccCCCCceEEEeecCCceeeccCcccccCCCc
Confidence 3556666678888887755431 3456888877665 678999999999997777777776521111000
Q ss_pred --cccccccccccccc----cccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCccccc
Q 002086 365 --YLSKSLRMSKRRGA----ALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDL 438 (969)
Q Consensus 365 --~~~~~~~~~k~~~~----~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl 438 (969)
-..++|+-.++... ..-+.+.+++|+..-.|...+. .+...... -.+|++
T Consensus 132 ~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~-----------------vD~s~~h~-------lSVWdW 187 (626)
T KOG2106|consen 132 LQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCA-----------------VDDSNPHM-------LSVWDW 187 (626)
T ss_pred CCCeeeecccccceeeeeeccccccceeeeecccCCCceEEE-----------------ecCCCccc-------cchhhc
Confidence 11122322222111 2234566677766433333330 11111111 134455
Q ss_pred ccceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEe---ecCCcc-CcccccccCCCCCccCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSM---SEGNLT-PIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~---~~~~~~-~v~~~~~~~~~~~~~~~g~ 513 (969)
+........+.-...|..+.|+|. .++++|+| -+.+..|+...+.+.+. ++.... .+..+.+...+... .|.
T Consensus 188 qk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi--TgD 264 (626)
T KOG2106|consen 188 QKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI--TGD 264 (626)
T ss_pred hhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE--eec
Confidence 655566666778889999999994 55777776 57799999998877663 333222 12222222222211 111
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCC-CceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCC--------
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSE-KPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMET-------- 584 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t-------- 584 (969)
... ...+|.... +..+....|.+.|.+++...+..|++|+.|..|..||-.-
T Consensus 265 S~G-------------------~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~el 325 (626)
T KOG2106|consen 265 SGG-------------------NILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETEL 325 (626)
T ss_pred CCc-------------------eEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccC
Confidence 111 112222221 2223344899999999999988888899999999998421
Q ss_pred ---------------------------------CcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE
Q 002086 585 ---------------------------------KSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD 631 (969)
Q Consensus 585 ---------------------------------~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~ 631 (969)
+-.+.+++|....+.++.+| +.++|++++.|+.+++|+ ..++.-
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~w 402 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEW 402 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeE
Confidence 00112347889999999999 899999999999999999 566666
Q ss_pred EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcE
Q 002086 632 WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRI 711 (969)
Q Consensus 632 ~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I 711 (969)
.....+++.|+.|+|.| .+++|+..|...+.|.++..++... . ...+++++.|+|+| .+|++|+.|+.|
T Consensus 403 t~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~--------~-d~~~ls~v~ysp~G-~~lAvgs~d~~i 471 (626)
T KOG2106|consen 403 TKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH--------T-DNEQLSVVRYSPDG-AFLAVGSHDNHI 471 (626)
T ss_pred EEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE--------e-cCCceEEEEEcCCC-CEEEEecCCCeE
Confidence 66677889999999999 9999999999999999986654432 2 27889999999999 899999999999
Q ss_pred EEEeCCcceEEEE--eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 712 RILDGLDIVHKFR--GFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 712 ~IwD~~~~~~~~~--~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
+||-+......+. +..+..+|+.+.|++|++||.+-+.|-.|..|.-
T Consensus 472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 9998554333222 2223388999999999999999999999999943
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-22 Score=213.23 Aligned_cols=252 Identities=21% Similarity=0.303 Sum_probs=213.7
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
+.+..+++.+|+||...|+.+.|+++...+++++.|..|+||.+......
T Consensus 247 d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~------------------------------ 296 (506)
T KOG0289|consen 247 DKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP------------------------------ 296 (506)
T ss_pred ecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc------------------------------
Confidence 55667788899999999999999999999999999999999997642211
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecC-
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHN- 594 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~- 594 (969)
.....|..+|+.+..+| +.||++++.||+..+.|++++.++....+.
T Consensus 297 -------------------------------~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 297 -------------------------------TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET 345 (506)
T ss_pred -------------------------------cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecc
Confidence 13456999999999999 999999999999999999999999888664
Q ss_pred --CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE-EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 595 --DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV-VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 595 --~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
-.+++++|+| ++..|.+|..||.|+|||+..+.. ..+-+|.++|..++|+.+|-+|++++.|+.|++||++..+..
T Consensus 346 s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 346 SDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF 424 (506)
T ss_pred ccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence 3589999999 999999999999999999988764 456678899999999999999999999999999999987754
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC--CcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG--LDIVHKFRGFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~--~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
+.... .....+..+.|.+.| .+|++++.|-.|++++. .+.......+.|.+..+.+.|....+++++++.
T Consensus 425 kt~~l-------~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 425 KTIQL-------DEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred ceeec-------cccccceeEEEcCCC-CeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccc
Confidence 44332 233479999999988 88999988888888883 234444455556677889999999999999999
Q ss_pred CCcEEEEEc
Q 002086 750 DSQVYVWKR 758 (969)
Q Consensus 750 Dg~I~IWdl 758 (969)
|..++++.+
T Consensus 497 d~~l~~~a~ 505 (506)
T KOG0289|consen 497 DAILRLYAL 505 (506)
T ss_pred hhheEEeec
Confidence 999998865
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=207.02 Aligned_cols=251 Identities=18% Similarity=0.373 Sum_probs=215.5
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+++++|.||.+.|+.++.......+.|++.|.+.+||.+++|.++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~--------------------------------- 184 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA--------------------------------- 184 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee---------------------------------
Confidence 45778899999999999998877899999999999999999887765
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEEC------CC---------
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDM------ET--------- 584 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl------~t--------- 584 (969)
.+.||.+.|.+|.|++ +.++++++.|++..||.. ..
T Consensus 185 ----------------------------~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSs 236 (481)
T KOG0300|consen 185 ----------------------------TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSS 236 (481)
T ss_pred ----------------------------eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCc
Confidence 5778999999999999 899999999999999972 10
Q ss_pred ---------------------CcEE----EEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCC
Q 002086 585 ---------------------KSCL----KLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHE 637 (969)
Q Consensus 585 ---------------------~~~i----~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~ 637 (969)
+..+ ..+ +|...|.+..|.. .++.+++++.|.+..+||+++++++. +.+|..
T Consensus 237 EeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ 315 (481)
T KOG0300|consen 237 EEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDS 315 (481)
T ss_pred hhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcch
Confidence 1111 112 7999999999998 89999999999999999999999876 456778
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 638 MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
..+.++-+|..+++++.+.|-+.++||++.. +... ..+.+|...|+++.|.-+. .+++|+.|.+|++||++
T Consensus 316 ELtHcstHptQrLVvTsSrDtTFRLWDFRea-I~sV------~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLr 386 (481)
T KOG0300|consen 316 ELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-IQSV------AVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLR 386 (481)
T ss_pred hccccccCCcceEEEEeccCceeEeccchhh-ccee------eeecccccceeEEEEecCC--ceeecCCCceEEEeeec
Confidence 8999999999999999999999999999832 2222 2237899999999999875 89999999999999988
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+....+.......+++.++.+..+..|+.--.+..|++||++..+
T Consensus 387 NMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 387 NMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred cccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 877777667778889999999988899999999999999998754
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-22 Score=214.04 Aligned_cols=261 Identities=21% Similarity=0.287 Sum_probs=213.4
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEe-ecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSM-SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~-~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
...+..|.-+|+||+++||++++++++.|++|.=|++.+|..... .+...
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~e----------------------------- 185 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDE----------------------------- 185 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccch-----------------------------
Confidence 566788999999999999999999999999999999998875521 11000
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEe-ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSF-IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l-~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~s 599 (969)
+....+.++..- .+|...|.+++.++ +.+|++|+.|..|.||+.++.+.++.+ +|.+.|.+
T Consensus 186 ----------------v~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~ 249 (479)
T KOG0299|consen 186 ----------------VLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSS 249 (479)
T ss_pred ----------------hhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceee
Confidence 000001111111 48999999999999 899999999999999999999999997 89999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceE-EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLV-VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
++|-. ..+.+++++.|.+|++|++..... -.+++|++.|..|....-++.+-+|+.|.++++|++.......
T Consensus 250 L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli------ 322 (479)
T KOG0299|consen 250 LAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI------ 322 (479)
T ss_pred eeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceee------
Confidence 99987 778999999999999999987654 4578899999999999888888889999999999995543321
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee------------cCCCCeEEEEEeCCCCEEEE
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF------------RNTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~------------~~~~~V~sl~fspdg~~LaS 746 (969)
..++.+.+-|++|-.+ ..+++|+.+|.|.+|++.+....+... .+...|++++..|...++++
T Consensus 323 ---frg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~as 397 (479)
T KOG0299|consen 323 ---FRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLAS 397 (479)
T ss_pred ---eeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEe
Confidence 2677889999999876 499999999999999976654444321 11126889999999999999
Q ss_pred EeCCCcEEEEEcCCC
Q 002086 747 ASEDSQVYVWKREEH 761 (969)
Q Consensus 747 gs~Dg~I~IWdl~t~ 761 (969)
|+.+|.|++|.+.++
T Consensus 398 GS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 398 GSWSGCVRLWKIEDG 412 (479)
T ss_pred cCCCCceEEEEecCC
Confidence 999999999999985
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=222.46 Aligned_cols=406 Identities=15% Similarity=0.170 Sum_probs=270.0
Q ss_pred cCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeE
Q 002086 309 SENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVA 388 (969)
Q Consensus 309 ~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~ 388 (969)
++.|. ++||++.++|. +..+.++-..|+++...+--+.++-|-.++.+..+. ++..+..-.++.-.|.+
T Consensus 179 s~~G~-lql~Nvrt~K~-----v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifN-----lK~dkil~sFk~d~g~V 247 (910)
T KOG1539|consen 179 SSQGR-LQLWNVRTGKV-----VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFN-----LKFDKILMSFKQDWGRV 247 (910)
T ss_pred ecCCc-EEEEEeccCcE-----EEEecccccceeEeccCCcceEEEEeccCceEEEEE-----cccCcEEEEEEccccce
Confidence 34344 57999999998 456678889999999766666666554555443332 22223222333334667
Q ss_pred EEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEec-ccccCEEEEEEeCCCCEEE
Q 002086 389 HSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQ-AHEGSIWTIKFSLDARFLA 467 (969)
Q Consensus 389 ~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~-gH~~~I~~l~fSpDg~~La 467 (969)
.+++|.-|... +++. +.....+ .+|||..-++...++ +|.+.|..+.|.|....|+
T Consensus 248 tslSFrtDG~p-----~las-----------~~~~G~m-------~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ 304 (910)
T KOG1539|consen 248 TSLSFRTDGNP-----LLAS-----------GRSNGDM-------AFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLV 304 (910)
T ss_pred eEEEeccCCCe-----eEEe-----------ccCCceE-------EEEEcCCCeeeeeeeccccCCcccceecCCCceEe
Confidence 77776644432 2222 1111112 245777666666666 9999999999999999999
Q ss_pred EEeCCCcEEEEecccc----eEEEeecCCccCcccccccCCCCCccCCCCCCC-CCcccccCCCCCCCCcccccceeeec
Q 002086 468 SAGEDRVIHVWEVQEC----EVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN-PPPEKKKKGKHSSPDYVHVPETVFSL 542 (969)
Q Consensus 468 Tgs~DgtVrIWDl~tg----~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 542 (969)
|++.|+.+++|=.+++ .+++...||..|...+.+............... ........ ......... .....
T Consensus 305 ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~-e~~~~~l~~---~~~~~ 380 (910)
T KOG1539|consen 305 TAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS-ESQSQELGQ---LHNKK 380 (910)
T ss_pred eccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH-HHHhHhhcc---ccccc
Confidence 9999999999977644 345556677766665555543322221111111 00000000 000000000 00000
Q ss_pred CCCcee---EeccCCCCEEEEEecC------CcEEEEEeCCCcEEEEECCCCcE-EEEeecC------CCeEEEEEecCC
Q 002086 543 SEKPFC---SFIGHLDDVLDLSWSR------SHLLLSSSMDKTVRLWDMETKSC-LKLFAHN------DYVTCIQFNPMD 606 (969)
Q Consensus 543 ~~k~~~---~l~gH~~~I~~l~fs~------~~~L~Sgs~DgtV~IWDl~t~~~-i~~~~h~------~~V~sv~fsp~~ 606 (969)
..+.+. ...-.-.+|..+++.. ++.++..-.+..++.|++++... ..++.+. ..+++++.++ +
T Consensus 381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-C 459 (910)
T KOG1539|consen 381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-C 459 (910)
T ss_pred ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-c
Confidence 000110 1112234667777653 35566666778899999998766 4455554 7899999999 9
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEEe----cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 607 DDYFISGSLDAKVRIWSISDRLVVDWT----DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~----~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
|++.+.|+..|.|-+|++++|.....+ .|..+|+.++...-++.+++++.+|.+.+||.....+....
T Consensus 460 GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l-------- 531 (910)
T KOG1539|consen 460 GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL-------- 531 (910)
T ss_pred CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee--------
Confidence 999999999999999999999887766 67899999999999999999999999999999887654332
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
.-...++++.++... ..++++..|-.|+++|.......-....|...|++++|||||++|++++.|++|++||+.++.
T Consensus 532 -~l~~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 532 -RLGSSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred -ccCCCcceeeeeehh-hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 234567788888766 688999999999999965433333334456779999999999999999999999999999854
Q ss_pred c
Q 002086 763 N 763 (969)
Q Consensus 763 ~ 763 (969)
+
T Consensus 610 l 610 (910)
T KOG1539|consen 610 L 610 (910)
T ss_pred e
Confidence 3
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-22 Score=205.87 Aligned_cols=210 Identities=25% Similarity=0.418 Sum_probs=177.8
Q ss_pred eeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC-----------------C-cEEEEe-ecCCCeEEEEEecCC
Q 002086 547 FCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET-----------------K-SCLKLF-AHNDYVTCIQFNPMD 606 (969)
Q Consensus 547 ~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t-----------------~-~~i~~~-~h~~~V~sv~fsp~~ 606 (969)
.+.+..|..++.+.+|++ |.++++|+.|..|+|.|++. + ..++++ .|.++|+++.|+| .
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence 346778999999999999 89999999999999999861 1 234444 8999999999999 8
Q ss_pred CCEEEEEECCCeEEEEeCCCce---EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 607 DDYFISGSLDAKVRIWSISDRL---VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~---~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
...|++|+.|++|++||+.... -.+.+....+|.++.|+|.|.+|++|....++++||+.+.++.... ....
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-----nPd~ 258 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-----NPDD 258 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-----Cccc
Confidence 9999999999999999997643 3345556688999999999999999999999999999988764332 2337
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC--cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL--DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~--~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.|...|+++.+++.+ .+.++++.||.|+|||.- .++..+........|.+..|+.+|+||++.+.|..|++|.+.++
T Consensus 259 qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred ccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 789999999999988 899999999999999954 34555555555677999999999999999999999999999985
Q ss_pred Cc
Q 002086 762 RN 763 (969)
Q Consensus 762 ~~ 763 (969)
+.
T Consensus 338 R~ 339 (430)
T KOG0640|consen 338 RM 339 (430)
T ss_pred ce
Confidence 43
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-22 Score=201.07 Aligned_cols=201 Identities=19% Similarity=0.333 Sum_probs=170.0
Q ss_pred CCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCC-cEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce
Q 002086 553 HLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETK-SCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL 628 (969)
Q Consensus 553 H~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~-~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~ 628 (969)
-.+.+.+++|++ .+.+++++.||+++|||+... .++..+ .|...|.++.|++.....+++++.|++|++|+.....
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 457789999998 789999999999999996543 345555 7999999999999888899999999999999997655
Q ss_pred -EEEEecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 629 -VVDWTDLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 629 -~~~~~~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
+..+.+|...|....|+|. .+.+++++.|+++++||++....... ...|...|.++.|+..+...+++|+
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--------i~ah~~Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--------IEAHNSEILCCDWSKYNHNVLATGG 210 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE--------EEeccceeEeecccccCCcEEEecC
Confidence 5567788899999999995 67899999999999999986543222 2567889999999999989999999
Q ss_pred CCCcEEEEeCCcce-EEEEeecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCC
Q 002086 707 ADSRIRILDGLDIV-HKFRGFRNTSSQISAAFNAD-GKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 707 ~Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspd-g~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.|+.|++||+++.. ..+....|.-.|..+.|||. ...|++++.|-+++|||...+
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 99999999987643 34455677888999999995 478999999999999999864
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=188.29 Aligned_cols=248 Identities=21% Similarity=0.303 Sum_probs=201.9
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+.-+.|.+.|+|.+|+|+|++||||+.|++|++.-+....+..
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~------------------------------------- 125 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA------------------------------------- 125 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc-------------------------------------
Confidence 3456799999999999999999999999999997654321110
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-----CcEEEEEe-CCCcEEEEECCCCcEEEEe-ecCCCe
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-----SHLLLSSS-MDKTVRLWDMETKSCLKLF-AHNDYV 597 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-----~~~L~Sgs-~DgtV~IWDl~t~~~i~~~-~h~~~V 597 (969)
..+-.+|.-|.+.|.+++|.. +.+|++++ .|..|++-|..+|+....+ +|++.|
T Consensus 126 -------------------~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 126 -------------------TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred -------------------cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 001125667999999999964 45677665 5778888899999988777 899999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
.++--- ++-.|++|+.|.+|++||++-...+...+.. ..|.+++..|.|++|++|-.|..+.+||++.+.
T Consensus 187 lalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 187 LALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred EEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc
Confidence 887543 6899999999999999999987776554321 469999999999999999999999999999999
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc----ceEEEEeecCCCCeEEEEEeCCCCEEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD----IVHKFRGFRNTSSQISAAFNADGKYII 745 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~----~~~~~~~~~~~~~V~sl~fspdg~~La 745 (969)
+++.+ ..|...|.++.|+|.- .++++++.|..|++-|+.. .........|...+..+.|+|..--++
T Consensus 265 ~iq~f--------~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfi 335 (350)
T KOG0641|consen 265 MIQRF--------HPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFI 335 (350)
T ss_pred eeeee--------CCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceee
Confidence 76654 6789999999999966 8999999999999999542 223334455677788999999988899
Q ss_pred EEeCCCcEEEEEcC
Q 002086 746 SASEDSQVYVWKRE 759 (969)
Q Consensus 746 Sgs~Dg~I~IWdl~ 759 (969)
+.+.|.++.+|-+.
T Consensus 336 sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 336 SSSADKTATLWALN 349 (350)
T ss_pred eccCcceEEEeccC
Confidence 99999999999874
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.7e-22 Score=214.12 Aligned_cols=254 Identities=21% Similarity=0.329 Sum_probs=203.2
Q ss_pred ccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 449 AHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 449 gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
-|.+.|+.+.+.|.. ..+||++..+.|.|||..+-.-.....
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------------------------------------- 164 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------------------------------------- 164 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-------------------------------------
Confidence 599999999999965 477888889999999987422111000
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcE-------EEEe-ecCCCe
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSC-------LKLF-AHNDYV 597 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~-------i~~~-~h~~~V 597 (969)
....|-..|.||.+.=++|+|++ ...|++++.|++|++||+..... ...+ +|...|
T Consensus 165 --------------~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~V 230 (422)
T KOG0264|consen 165 --------------GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVV 230 (422)
T ss_pred --------------ccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcce
Confidence 01234447899999889999998 68999999999999999975433 1223 899999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCC--ceE-EEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISD--RLV-VDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~--~~~-~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
..++|++.+..+|.+++.|+.+.|||+++ .++ .....|...|.|++|+|-+ ..||+|+.|++|.+||+++....
T Consensus 231 eDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~-- 308 (422)
T KOG0264|consen 231 EDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP-- 308 (422)
T ss_pred ehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC--
Confidence 99999998889999999999999999995 332 3456678999999999954 56778999999999999987652
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--------------EEEEeecCCCCeEEEEEeC
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--------------HKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--------------~~~~~~~~~~~V~sl~fsp 739 (969)
.....+|...|.++.|+|.....|++++.|+.+.+||+.... ..|.--+|...|..+.|+|
T Consensus 309 -----lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp 383 (422)
T KOG0264|consen 309 -----LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP 383 (422)
T ss_pred -----ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC
Confidence 223378999999999999998999999999999999954322 1244445777899999999
Q ss_pred CCC-EEEEEeCCCcEEEEEcCC
Q 002086 740 DGK-YIISASEDSQVYVWKREE 760 (969)
Q Consensus 740 dg~-~LaSgs~Dg~I~IWdl~t 760 (969)
+.. .|++.++|+.+.||+...
T Consensus 384 ~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 384 NEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCeEEEEecCCceEEEeeccc
Confidence 765 577889999999999874
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=199.76 Aligned_cols=241 Identities=19% Similarity=0.299 Sum_probs=199.3
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
-++.|..|.|+|.+..|+.++.||.+++||+...++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~------------------------------------------ 49 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL------------------------------------------ 49 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh------------------------------------------
Confidence 47889999999998889989999999999987543221
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCE
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDY 609 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~ 609 (969)
...|..++.+++|.+...+++|+.||.|+.+|+.++.....-.|..+|.||.+.+ ..+.
T Consensus 50 --------------------~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~~ 108 (323)
T KOG1036|consen 50 --------------------KFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVGC 108 (323)
T ss_pred --------------------heecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCCe
Confidence 2248899999999998999999999999999999999999999999999999998 8899
Q ss_pred EEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCe
Q 002086 610 FISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI 689 (969)
Q Consensus 610 L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I 689 (969)
+++|+.|++|++||.+.......+.....|.++... |+.|++|+.+..+.+||+++..... +.....-...+
T Consensus 109 vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~------q~reS~lkyqt 180 (323)
T KOG1036|consen 109 VISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF------QRRESSLKYQT 180 (323)
T ss_pred EEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchh------hhccccceeEE
Confidence 999999999999999987666666666788888775 6799999999999999999876532 12224456678
Q ss_pred EEEEEcCCCCceEEEEeCCCcEEEEe--CC----cceEEEEeecC-------CCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 690 TGFQFSPSNPSEVLVTSADSRIRILD--GL----DIVHKFRGFRN-------TSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 690 t~l~fspd~~~~l~sgs~Dg~I~IwD--~~----~~~~~~~~~~~-------~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
.|+++.|.+ .-+++++-||.|.+=. .. ...-.|+.|.. ..+|++++|+|--+.||||+.||.|.+|
T Consensus 181 R~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~W 259 (323)
T KOG1036|consen 181 RCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIW 259 (323)
T ss_pred EEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEc
Confidence 999999955 6789999999988743 32 22333444432 2468899999999999999999999999
Q ss_pred EcCCCC
Q 002086 757 KREEHR 762 (969)
Q Consensus 757 dl~t~~ 762 (969)
|+.+.+
T Consensus 260 d~~~rK 265 (323)
T KOG1036|consen 260 DLFNRK 265 (323)
T ss_pred cCcchh
Confidence 999854
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=199.96 Aligned_cols=268 Identities=21% Similarity=0.334 Sum_probs=217.7
Q ss_pred eEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 548 CSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
..+.+|...|.+|+|+- +..|++|+.|+++.+|++......+.. +|.+.|-.++|+|...++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 36788999999999997 899999999999999999988655543 79999999999998889999999999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 624 ISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 624 l~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
++.+++.........-.-++|+|+|++++++..|..|.+.|.++.+.....+ ....+..+.|+-++ .+++
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~---------~~~e~ne~~w~~~n-d~Ff 163 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ---------FKFEVNEISWNNSN-DLFF 163 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc---------ccceeeeeeecCCC-CEEE
Confidence 9999988888777777789999999999999999999999999887755432 34567788899666 6888
Q ss_pred EEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeee
Q 002086 704 VTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCK 783 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~ 783 (969)
.....|+|.|.....+........|.....|+.|+|+|+|||+|+.|-.+-+||+++.- |.
T Consensus 164 lt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi-------------------C~ 224 (313)
T KOG1407|consen 164 LTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI-------------------CE 224 (313)
T ss_pred EecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh-------------------hh
Confidence 88888999998877766666777788889999999999999999999999999998722 11
Q ss_pred eeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCCccccc
Q 002086 784 DVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLIS 863 (969)
Q Consensus 784 ~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is 863 (969)
....-..|+ .....||-+|+.++++++|+.+-+-...++.-.-.. ..+.+...++
T Consensus 225 R~isRldwp------------------------VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-~~~~~t~tVA 279 (313)
T KOG1407|consen 225 RCISRLDWP------------------------VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-PCEGPTFTVA 279 (313)
T ss_pred eeeccccCc------------------------eEEEEeccCcceeeccCccceEEeEecccCCeEEEe-eccCCceeEE
Confidence 111111111 123457888999999999998877777766544332 3455667899
Q ss_pred cCCCCC
Q 002086 864 HDPGIS 869 (969)
Q Consensus 864 ~hP~~~ 869 (969)
|||.-.
T Consensus 280 WHPk~~ 285 (313)
T KOG1407|consen 280 WHPKRP 285 (313)
T ss_pred ecCCCc
Confidence 999944
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-22 Score=228.33 Aligned_cols=299 Identities=16% Similarity=0.226 Sum_probs=205.5
Q ss_pred CCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHH
Q 002086 336 GHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQ 415 (969)
Q Consensus 336 GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~ 415 (969)
.|.+.|.++.|..++..+|+|+.|..+..|....-.. ... .+....+..+.+.-.+....+.+.. ........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~---~~~-~~~~~~~~~~~~~~~s~~~p~~s~~---~~~~~~~s 337 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER---MRV-AEGDSSCMYFEYNANSQIEPSTSSE---EKISSRTS 337 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch---hcc-cccccchhhhhhhhccccCcccccc---cccccccc
Confidence 8999999999999999999999999887774221000 000 1111111111111011100000000 00000000
Q ss_pred hh-ccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCcc
Q 002086 416 KQ-NKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLT 494 (969)
Q Consensus 416 ~~-~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~ 494 (969)
.. ....... +....+.-.+ .-+.+++|+||.+.|..|.||.+ .+|+|+|.|+|||||++...+++..+
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f----~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F----- 406 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVF----SEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF----- 406 (712)
T ss_pred ccccccCCcc-ccCCCccccc----cccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-----
Confidence 00 0000000 1111111001 12456789999999999999965 48999999999999999987776532
Q ss_pred CcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEe
Q 002086 495 PIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSS 572 (969)
Q Consensus 495 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs 572 (969)
.|.+-|+||+|+| +++|++|+
T Consensus 407 ---------------------------------------------------------~HndfVTcVaFnPvDDryFiSGS 429 (712)
T KOG0283|consen 407 ---------------------------------------------------------SHNDFVTCVAFNPVDDRYFISGS 429 (712)
T ss_pred ---------------------------------------------------------ecCCeeEEEEecccCCCcEeecc
Confidence 3999999999999 79999999
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec---------CCCCEEEEE
Q 002086 573 MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD---------LHEMVTAAC 643 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---------~~~~V~sv~ 643 (969)
.||.|+||++...+.+.-..-..-|++++|.| +|++.+.|+.+|.+++|+....++..... ....|+.+.
T Consensus 430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q 508 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ 508 (712)
T ss_pred cccceEEeecCcCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE
Confidence 99999999999998888777779999999999 89999999999999999998876653221 123699999
Q ss_pred EccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 644 YTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 644 fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
|.|.. ..+++.+.|..|+|||.++..++..+. .......-....|+.+| .+|++++.|..|+||+..
T Consensus 509 ~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK------G~~n~~SQ~~Asfs~Dg-k~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 509 FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK------GFRNTSSQISASFSSDG-KHIVSASEDSWVYIWKND 576 (712)
T ss_pred ecCCCCCeEEEecCCCceEEEeccchhhhhhhc------ccccCCcceeeeEccCC-CEEEEeecCceEEEEeCC
Confidence 99854 468899999999999998776543321 11223334566788887 899999999999999954
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=211.81 Aligned_cols=359 Identities=17% Similarity=0.213 Sum_probs=239.7
Q ss_pred cceeeeEecccccCEEEEEEeCCCC---EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDAR---FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~---~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
.++.+.+|.||++.|.+|+|...+. +|||+|+|.+||||.+.-+............ .
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~-------------------t- 239 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSL-------------------T- 239 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccc-------------------c-
Confidence 5678899999999999999997544 8999999999999998633211100000000 0
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc--EEEE--e
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS--CLKL--F 591 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~--~i~~--~ 591 (969)
.....+.+.......+.+. .-..+.||.+.|+++.|+| +-.|++++.|+++.+|...+.. -+.. +
T Consensus 240 --------~~~~~~~f~~l~~i~~~is--~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl 309 (764)
T KOG1063|consen 240 --------TLSNLPVFMILEEIQYRIS--FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRL 309 (764)
T ss_pred --------cccCCceeeeeeeEEEEEe--hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEe
Confidence 0000000000000000000 0124569999999999999 6699999999999999877652 2222 2
Q ss_pred ----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002086 592 ----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLY 663 (969)
Q Consensus 592 ----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~Iw 663 (969)
+.....+...|+| +++.+++-+.-|..++|-.... ......+|.+.|..++|+|.|++|++.+.|.+-|+|
T Consensus 310 Ge~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 310 GEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred ecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeee
Confidence 2345689999999 8999999999999999994432 223455678899999999999999999999988886
Q ss_pred EcCCCc--------------------eee---------------eeee--------------------------------
Q 002086 664 SIEDSK--------------------LHQ---------------LNQV-------------------------------- 676 (969)
Q Consensus 664 Dl~~~~--------------------~~~---------------~~~~-------------------------------- 676 (969)
---..+ .++ .+..
T Consensus 389 a~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG 468 (764)
T KOG1063|consen 389 ARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG 468 (764)
T ss_pred cccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence 432000 000 0000
Q ss_pred -----------------------------------------------eecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 677 -----------------------------------------------DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 677 -----------------------------------------------~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
+-..+..+|...|++++.+|++ +++++++...
T Consensus 469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~ 547 (764)
T KOG1063|consen 469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSS 547 (764)
T ss_pred ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhC
Confidence 0112457889999999999988 7888886543
Q ss_pred -----cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeee
Q 002086 710 -----RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKD 784 (969)
Q Consensus 710 -----~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~ 784 (969)
.|++|+............|.-.|+.++|||||+||++.+.|.++.+|...+..... .. |
T Consensus 548 ~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e--~~----------f---- 611 (764)
T KOG1063|consen 548 LKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE--FR----------F---- 611 (764)
T ss_pred CccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh--hh----------h----
Confidence 49999988877666677788899999999999999999999999999986531110 00 1
Q ss_pred eEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCC--ccccC--CCCCCCCcc
Q 002086 785 VSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTN--KVERV--PSPPEEELS 860 (969)
Q Consensus 785 ~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~--~~~~~--l~~pee~l~ 860 (969)
....++...+| .+.++|++-..++.++|..+.+|..... +-+.. .....+.+.
T Consensus 612 ----------a~~k~HtRIIW-------------dcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVT 668 (764)
T KOG1063|consen 612 ----------ACLKAHTRIIW-------------DCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVT 668 (764)
T ss_pred ----------ccccccceEEE-------------EcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCcee
Confidence 11223344444 3456777776778888888888865433 11111 123445666
Q ss_pred ccccCCCCC
Q 002086 861 LISHDPGIS 869 (969)
Q Consensus 861 ~is~hP~~~ 869 (969)
+++++|.+.
T Consensus 669 Av~~~~~~~ 677 (764)
T KOG1063|consen 669 AVAYLPVDH 677 (764)
T ss_pred eEEeecccc
Confidence 777766544
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=207.00 Aligned_cols=238 Identities=18% Similarity=0.316 Sum_probs=202.6
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
...|+++...+....++|||.|.++.++|...++.+.
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~------------------------------------------- 255 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA------------------------------------------- 255 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh-------------------------------------------
Confidence 3578899999887899999999999999988665543
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCC
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDD 608 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~ 608 (969)
.|.||+..|+.+.|++ ...+++++.|..|+||......+.... .|..+|+.+..+| ++.
T Consensus 256 ------------------~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tge 316 (506)
T KOG0289|consen 256 ------------------TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGE 316 (506)
T ss_pred ------------------hccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CCc
Confidence 6789999999999999 788999999999999999877765554 8999999999999 999
Q ss_pred EEEEEECCCeEEEEeCCCceEEEEecCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCC
Q 002086 609 YFISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~~~~~~~~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h 685 (969)
||++++.||+..+.|++++..+....+. -.+++++|+|||..|.+|..||.++|||+....... ++.+|
T Consensus 317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a--------~Fpgh 388 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA--------KFPGH 388 (506)
T ss_pred EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc--------cCCCC
Confidence 9999999999999999999877665553 348999999999999999999999999998876432 23779
Q ss_pred CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE--EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH--KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 686 ~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~--~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.++|..++|+.+| .+|++++.|+.|++||+++... .+... ....+.+++|.+.|.||+.++.|=.|++++-.+
T Consensus 389 t~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 389 TGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred CCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 9999999999987 9999999999999999886542 23222 223688999999999999998887777776544
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=198.10 Aligned_cols=249 Identities=18% Similarity=0.301 Sum_probs=200.6
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
..|++.|-.+...--|++||||+.|++|||+.+.....
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------ 45 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------ 45 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence 47999999888888899999999999999999875321
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEec-C--CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEE
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS-R--SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQ 601 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs-~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~ 601 (969)
.+++.+|.||.++|+.++|. | +.+|++++.||.|.||.-.+++-.+.. .|...|++|+
T Consensus 46 ----------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~ 109 (299)
T KOG1332|consen 46 ----------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVA 109 (299)
T ss_pred ----------------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeec
Confidence 12345899999999999995 5 899999999999999999998655444 7999999999
Q ss_pred EecCC-CCEEEEEECCCeEEEEeCCCc----eEEEEecCCCCEEEEEEccC---C-----------CEEEEEeCCCcEEE
Q 002086 602 FNPMD-DDYFISGSLDAKVRIWSISDR----LVVDWTDLHEMVTAACYTPD---G-----------QNALIGSHKGSCRL 662 (969)
Q Consensus 602 fsp~~-~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~~~V~sv~fspd---g-----------~~Lasgs~dg~I~I 662 (969)
|.|.+ +-.|++++.||.|.|.+.+.. .......|.-.|++++|.|. | +.|++|+.|..|+|
T Consensus 110 wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vki 189 (299)
T KOG1332|consen 110 WAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKI 189 (299)
T ss_pred ccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceee
Confidence 99943 347889999999999998765 12234567778999999985 4 56999999999999
Q ss_pred EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC---CceEEEEeCCCcEEEEeCCcceEEE---EeecCCCCeEEEE
Q 002086 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN---PSEVLVTSADSRIRILDGLDIVHKF---RGFRNTSSQISAA 736 (969)
Q Consensus 663 wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~---~~~l~sgs~Dg~I~IwD~~~~~~~~---~~~~~~~~V~sl~ 736 (969)
|+...+... ......+|...|..++|.|.. ...|++++.||++.||......... ..+.....+..++
T Consensus 190 W~~~~~~w~------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vS 263 (299)
T KOG1332|consen 190 WKFDSDSWK------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVS 263 (299)
T ss_pred eecCCcchh------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEE
Confidence 999887432 223358899999999999964 3579999999999999854321111 1223456688999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 737 FNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 737 fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
||..|.+|+.++.|+.|.+|.=+.
T Consensus 264 WS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 264 WSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EeccccEEEEecCCcEEEEEEeCC
Confidence 999999999999999999998653
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-21 Score=199.65 Aligned_cols=321 Identities=18% Similarity=0.285 Sum_probs=234.8
Q ss_pred EEEEeeCC--CCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccc
Q 002086 291 FFLIKNLD--TGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSK 368 (969)
Q Consensus 291 ~~~i~~ld--~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~ 368 (969)
.-.||+.. .++- ++..-+.| +..++|.+++|+. +.+..||.+.|+++.+.+....+.|+++|.+.-.|.-.
T Consensus 148 kDGiW~Vaa~~tqp-i~gtASAD-hTA~iWs~Esg~C-----L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 148 KDGIWHVAADSTQP-ICGTASAD-HTARIWSLESGAC-----LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred ccceeeehhhcCCc-ceeecccc-cceeEEeeccccc-----eeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 33467753 4444 66666774 5578999999998 46789999999999999999999999999876666421
Q ss_pred c-ccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEe
Q 002086 369 S-LRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEI 447 (969)
Q Consensus 369 ~-~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L 447 (969)
+ |...+... -..+ +++.+.-.... ......+.......-|+ -.+..|
T Consensus 221 v~~~vP~~~a---~~~h---------SsEeE~e~sDe------~~~d~d~~~~sD~~tiR--------------vPl~~l 268 (481)
T KOG0300|consen 221 VNWEVPSNNA---PSDH---------SSEEEEEHSDE------HNRDTDSSEKSDGHTIR--------------VPLMRL 268 (481)
T ss_pred hcCcCCCCCC---CCCC---------Cchhhhhcccc------cccccccccccCCceee--------------eeeeee
Confidence 1 11111100 0000 00000000000 00000000000000111 235679
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
.+|.+.|.++.|-..|+.++|++.|.+..+||+++|+++.
T Consensus 269 tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~---------------------------------------- 308 (481)
T KOG0300|consen 269 TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN---------------------------------------- 308 (481)
T ss_pred eccccceEehhhhcCcceeeeeeccccceeeeeccCceec----------------------------------------
Confidence 9999999999999999999999999999999999988765
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc-EEEEe-ecCCCeEEEEEec
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS-CLKLF-AHNDYVTCIQFNP 604 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~-~i~~~-~h~~~V~sv~fsp 604 (969)
.+.||....+.++-+| ..++++++.|.+.++||++..- .+.+| +|...|+++.|..
T Consensus 309 ---------------------~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 309 ---------------------ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred ---------------------cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence 5668888999899898 7889999999999999998432 34455 8999999999985
Q ss_pred CCCCEEEEEECCCeEEEEeCCCc-eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 605 MDDDYFISGSLDAKVRIWSISDR-LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
+..+++|+.|.+|+|||+++. ..+..+....+++.++.+..+..|+.--.+..|++||+....+... ......
T Consensus 368 --dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl----PrtsRq 441 (481)
T KOG0300|consen 368 --DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL----PRTSRQ 441 (481)
T ss_pred --CCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccC----Cccccc
Confidence 788999999999999999875 4667777888999999999888999999999999999998776433 223347
Q ss_pred CCCCCeEEEEEcCCCC-ceEEEEeCCCcEEEEeCC
Q 002086 684 SSTRKITGFQFSPSNP-SEVLVTSADSRIRILDGL 717 (969)
Q Consensus 684 ~h~~~It~l~fspd~~-~~l~sgs~Dg~I~IwD~~ 717 (969)
+|..-|+|++|..+-+ ..|++++.|..+.-|.+.
T Consensus 442 gHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 8999999999986432 358889999999999854
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-21 Score=210.20 Aligned_cols=274 Identities=19% Similarity=0.288 Sum_probs=205.8
Q ss_pred cceeeeec-ccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhh
Q 002086 339 PVVKELMR-RENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQ 417 (969)
Q Consensus 339 ~~V~~l~~-~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~ 417 (969)
..|.++++ ++.|+-++..+... +..|....-... ..+-..+-.+++..|..|...+..+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~r-vqly~~~~~~~~-----k~~srFk~~v~s~~fR~DG~LlaaG-------------- 86 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVR-VQLYSSVTRSVR-----KTFSRFKDVVYSVDFRSDGRLLAAG-------------- 86 (487)
T ss_pred CcceeEecCCCCCCceEEecccE-EEEEecchhhhh-----hhHHhhccceeEEEeecCCeEEEcc--------------
Confidence 56888885 66776655443332 222321111001 1122233455666665555443332
Q ss_pred ccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEeecCCccCc
Q 002086 418 NKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496 (969)
Q Consensus 418 ~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v 496 (969)
+..+.+-|+ |+++-..++.+++|+.+|..+.|+|+ +..|++|+.|+.+++||+.+....
T Consensus 87 -D~sG~V~vf---------D~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~---------- 146 (487)
T KOG0310|consen 87 -DESGHVKVF---------DMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ---------- 146 (487)
T ss_pred -CCcCcEEEe---------ccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE----------
Confidence 233333333 44445567789999999999999994 568899999999999999875531
Q ss_pred ccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCC
Q 002086 497 HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMD 574 (969)
Q Consensus 497 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~D 574 (969)
..+.+|++.|.|.+|+| +.+++||++|
T Consensus 147 ---------------------------------------------------~~l~~htDYVR~g~~~~~~~hivvtGsYD 175 (487)
T KOG0310|consen 147 ---------------------------------------------------AELSGHTDYVRCGDISPANDHIVVTGSYD 175 (487)
T ss_pred ---------------------------------------------------EEecCCcceeEeeccccCCCeEEEecCCC
Confidence 26788999999999999 6799999999
Q ss_pred CcEEEEECCCC-cEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEEEEe-cCCCCEEEEEEccCCCEE
Q 002086 575 KTVRLWDMETK-SCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVVDWT-DLHEMVTAACYTPDGQNA 651 (969)
Q Consensus 575 gtV~IWDl~t~-~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~-~~~~~V~sv~fspdg~~L 651 (969)
|+|++||++.. ..+..+.|..+|..+.+.| .+..|++++. ..|+|||+.+ ++.+... .|+..|+|+++..++..|
T Consensus 176 g~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 176 GKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRL 253 (487)
T ss_pred ceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceE
Confidence 99999999987 7888889999999999999 8899998874 6799999985 4555444 488999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 652 LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 652 asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
++|+-|+.+++||+.+.+..... ...++|.+++.+|++ +.+++|-.+|.+.+-+
T Consensus 254 lS~sLD~~VKVfd~t~~Kvv~s~---------~~~~pvLsiavs~dd-~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 254 LSGSLDRHVKVFDTTNYKVVHSW---------KYPGPVLSIAVSPDD-QTVVIGMSNGLVSIRR 307 (487)
T ss_pred eecccccceEEEEccceEEEEee---------ecccceeeEEecCCC-ceEEEecccceeeeeh
Confidence 99999999999998887765442 346899999999987 8999999999887763
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=220.22 Aligned_cols=248 Identities=20% Similarity=0.326 Sum_probs=204.7
Q ss_pred cccCEE---EEEEe-CCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 450 HEGSIW---TIKFS-LDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 450 H~~~I~---~l~fS-pDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
|...|. .+..+ |.++||+|||.||.|++|++.......
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~-------------------------------------- 61 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP-------------------------------------- 61 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc--------------------------------------
Confidence 444454 34444 367789999999999999986321100
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC--cEEEEe-ecCCCeEEEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK--SCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~--~~i~~~-~h~~~V~sv~ 601 (969)
+......+..|.++|.++.... ++.|+++|.|-+|++|+...+ -|+.++ .|.+.|.|++
T Consensus 62 -----------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla 124 (735)
T KOG0308|consen 62 -----------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLA 124 (735)
T ss_pred -----------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeee
Confidence 0011336778999999999887 789999999999999999887 466666 7999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceE--E---------EEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLV--V---------DWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--~---------~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
+-..+..++++|+.|+.|.+||+.++.- + .+. ++...|++++.++.|..|+.|+..+.+++||.++.+
T Consensus 125 ~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ 204 (735)
T KOG0308|consen 125 YIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK 204 (735)
T ss_pred ecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc
Confidence 9333888999999999999999997621 1 122 566789999999999999999999999999999987
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
.... ..+|...|.++..+++| ..+++++.||+|++||+....+....+.|...|.++..+|+-.++++|+.
T Consensus 205 kimk--------LrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 205 KIMK--------LRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR 275 (735)
T ss_pred ceee--------eeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC
Confidence 5432 26899999999999998 89999999999999999887777777778888999999999999999999
Q ss_pred CCcEEEEEcCCC
Q 002086 750 DSQVYVWKREEH 761 (969)
Q Consensus 750 Dg~I~IWdl~t~ 761 (969)
||.|+.=|+.++
T Consensus 276 d~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 276 DGNIYRTDLRNP 287 (735)
T ss_pred CCcEEecccCCc
Confidence 999999999985
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=213.16 Aligned_cols=365 Identities=16% Similarity=0.155 Sum_probs=256.8
Q ss_pred CCcEEEEeeCCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeee-cccc----------cccccCC
Q 002086 288 LGAFFLIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELM-RREN----------VNRINDS 356 (969)
Q Consensus 288 ~~~~~~i~~ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~-~~~~----------~~~~~t~ 356 (969)
-|..-+.+|..+.+...|-. .+-+.|||+..=+.++ ....+.-|+.-|..+. .+-+ +..++|+
T Consensus 325 PD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~~kvg--k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TC 398 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYN----DHSLYVWDVRDVNKVG--KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTC 398 (1080)
T ss_pred CceeEEEecCCCceEEEEEc----CceEEEEecccccccc--ceeeeeeccceeeeeccccccccCcccccCCccceeEe
Confidence 56667777766666655542 4557899998766554 2455677888888887 3311 2347788
Q ss_pred CCcccccccccccccccccccccccceeeeeEEEeeecCCccc-cCCCCcccchHHHHHHhhccccCcceEEEccCCCcc
Q 002086 357 AGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKEC-INPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSY 435 (969)
Q Consensus 357 s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l 435 (969)
+.|.++..|.... -..... ..+++. +.+... .+. .+..+.+.+...+..-
T Consensus 399 SsD~TIRlW~l~~---ctnn~v-yrRNil--------s~~l~ki~y~-----------------d~~~q~~~d~~~~~fd 449 (1080)
T KOG1408|consen 399 SSDGTIRLWDLAF---CTNNQV-YRRNIL--------SANLSKIPYE-----------------DSTQQIMHDASAGIFD 449 (1080)
T ss_pred cCCCcEEEeeccc---ccccce-eecccc--------hhhhhcCccc-----------------cCchhhhhhccCCccc
Confidence 8888887765211 000000 001110 000000 000 0000111111000000
Q ss_pred cccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 436 KDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
+. ...+-+-.-.|.+++.+|+|++||+|..-|+++||++...+.+
T Consensus 450 ka------~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~----------------------------- 494 (1080)
T KOG1408|consen 450 KA------LVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT----------------------------- 494 (1080)
T ss_pred cc------chhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh-----------------------------
Confidence 01 1123356778999999999999999999999999999864432
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC----CcEEEEEeCCCcEEEEECCCCc-EEEE
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR----SHLLLSSSMDKTVRLWDMETKS-CLKL 590 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~----~~~L~Sgs~DgtV~IWDl~t~~-~i~~ 590 (969)
+.+..|..+|.|+.|+. .++|++++.|.-|.|+|+...- ++.+
T Consensus 495 --------------------------------~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qt 542 (1080)
T KOG1408|consen 495 --------------------------------CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQT 542 (1080)
T ss_pred --------------------------------hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhh
Confidence 24567999999999985 5799999999999999997654 4445
Q ss_pred e-ecCCCeEEEEEecCCC--CEEEEEECCCeEEEEeCCC---ceEEEE---ecCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 002086 591 F-AHNDYVTCIQFNPMDD--DYFISGSLDAKVRIWSISD---RLVVDW---TDLHEMVTAACYTPDGQNALIGSHKGSCR 661 (969)
Q Consensus 591 ~-~h~~~V~sv~fsp~~~--~~L~sgs~Dg~I~IWDl~~---~~~~~~---~~~~~~V~sv~fspdg~~Lasgs~dg~I~ 661 (969)
+ +|...|++|.|.- ++ ..+++++.|..|.+--.+. +.+... .-.+..++.++..|..+++++++.|..|+
T Consensus 543 ld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 543 LDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred hcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE
Confidence 5 8999999999987 44 5789999998776443331 222211 11235689999999999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC
Q 002086 662 LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG 741 (969)
Q Consensus 662 IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg 741 (969)
|||+.+++....+.- ...|.+....+...|.+ .++++.+.|.++.++|.....+....+.|...|+.+.|.+|-
T Consensus 622 if~i~sgKq~k~FKg-----s~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKG-----SRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC 695 (1080)
T ss_pred EEeccccceeeeecc-----cccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc
Confidence 999999987665422 25677889999999998 899999999999999987777777777888899999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCC
Q 002086 742 KYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 742 ~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+.|++.+.||.|+||.+...
T Consensus 696 kHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hhheeecCCceEEEEECchh
Confidence 99999999999999999753
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=199.06 Aligned_cols=300 Identities=20% Similarity=0.298 Sum_probs=193.6
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEE--eecCCcc--CcccccccCCCCCccC---CCCCC
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMS--MSEGNLT--PIHPSLCNSSDKASSL---DGSSP 515 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~--~~~~~~~--~v~~~~~~~~~~~~~~---~g~~~ 515 (969)
.+..|++|.+.|++|+|+.||++|||++.|++|+||++.+.+... .+..... ....+.+.+....... .|...
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 356799999999999999999999999999999999998643211 0100000 0011111111111000 00000
Q ss_pred -CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-
Q 002086 516 -NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA- 592 (969)
Q Consensus 516 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~- 592 (969)
.....+.+.+.... .++. ...+..-..|.-.|..+-... +.+|++++.|.+|.||++. |+.+..+.
T Consensus 158 ~vyk~~K~~dG~~~~-~~v~---------~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt 226 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSH-HFVH---------IDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT 226 (420)
T ss_pred EEEEeeecccCCCCc-cccc---------ccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence 00000011111000 0000 000111234666777777665 7899999999999999999 88887773
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeC---CCc------eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI---SDR------LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLY 663 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl---~~~------~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~Iw 663 (969)
....-+..+.+| +|.++++++.---|++|.+ +.| ++..+.+|...|..++|+++...+++.+.||+++||
T Consensus 227 nq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 227 NQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred ccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEe
Confidence 444566778999 9999999999999999987 223 356788999999999999999999999999999999
Q ss_pred EcCCCceeeeeeeeec---ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-EeecCCCCeEEEEEeC
Q 002086 664 SIEDSKLHQLNQVDFQ---TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-RGFRNTSSQISAAFNA 739 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~---~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-~~~~~~~~V~sl~fsp 739 (969)
|+.-.....+....+. .........-..+..+|.+ .+++.+....|.+|........- ....|...|.+++|++
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g--~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG--DSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS 383 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC--cEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC
Confidence 9864321111000000 1112233444589999987 45555666788888755422111 1124677899999999
Q ss_pred CCCEEEEEeCCCcEEEEE
Q 002086 740 DGKYIISASEDSQVYVWK 757 (969)
Q Consensus 740 dg~~LaSgs~Dg~I~IWd 757 (969)
+|+|++|++ |..++++.
T Consensus 384 ~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 384 DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CCcEEeeec-ceeeeeec
Confidence 999999998 77888876
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=211.56 Aligned_cols=245 Identities=20% Similarity=0.338 Sum_probs=203.7
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
..+++.++|.||...|..+++.+ +..++++|.||++++|+-...+.+.
T Consensus 2 ~~Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~------------------------------- 49 (745)
T KOG0301|consen 2 PQYKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLE------------------------------- 49 (745)
T ss_pred CcceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCccccc-------------------------------
Confidence 34678899999999999999875 4589999999999999976544332
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEE-EEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLD-LSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHN 594 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~-l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~ 594 (969)
...+.+|.+.|.. ++|.+ +..|++|+.|++|.+|...+..++.++ +|.
T Consensus 50 ----------------------------~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~ 101 (745)
T KOG0301|consen 50 ----------------------------THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHK 101 (745)
T ss_pred ----------------------------ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccc
Confidence 1245667777776 88875 567999999999999999999998877 999
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
..|.|+.... ++. +++|+.|.++++|-..... ..+.+|...|.++.+-|++ .+++|+.|.+|++|.-. +...
T Consensus 102 snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~l~-~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~--~~l~-- 173 (745)
T KOG0301|consen 102 SNVCSLSIGE-DGT-LISGSWDSTAKVWRIGELV-YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG--TLLK-- 173 (745)
T ss_pred cceeeeecCC-cCc-eEecccccceEEecchhhh-cccCCcchheeeeeecCCC-cEEeccCcceeeeccCC--chhh--
Confidence 9999999875 444 9999999999999875432 2378899999999999987 89999999999999863 3222
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
...+|..-|.++++-+++ .+++++.||.|++|+. .....++.+.|...+.+++...++..++++++|++++
T Consensus 174 ------tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 174 ------TFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred ------hhccchhheeeeEEecCC--CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence 237899999999999975 7999999999999997 4455566677888899999888889999999999999
Q ss_pred EEEcCC
Q 002086 755 VWKREE 760 (969)
Q Consensus 755 IWdl~t 760 (969)
||+...
T Consensus 245 iW~~~e 250 (745)
T KOG0301|consen 245 IWKKDE 250 (745)
T ss_pred EeecCc
Confidence 999873
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=213.55 Aligned_cols=202 Identities=21% Similarity=0.346 Sum_probs=173.7
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
++.+.....+.+|+||+..|+|+....++. |+|||.|.+++||-....
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l------------------------------- 132 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL------------------------------- 132 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh-------------------------------
Confidence 335566677888999999999999988887 999999999999976521
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ec
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AH 593 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h 593 (969)
...+.+|+..|+++.+-|.+.++|||.|++|++|.- ++++++| +|
T Consensus 133 --------------------------------~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gH 178 (745)
T KOG0301|consen 133 --------------------------------VYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGH 178 (745)
T ss_pred --------------------------------hcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccc
Confidence 114778999999999999779999999999999987 6778877 89
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
++.|..+++.+ +..|++|+.||.|++|++....+....+|..-|+++....++..++++++|++++||+.. .+.+.
T Consensus 179 tD~VRgL~vl~--~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~ 254 (745)
T KOG0301|consen 179 TDCVRGLAVLD--DSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQV 254 (745)
T ss_pred hhheeeeEEec--CCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEE
Confidence 99999999986 778999999999999999888888999999999999988888999999999999999987 33333
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
. ......|.++.+-+.| -+++|+.||.||||..
T Consensus 255 I--------~lPttsiWsa~~L~Ng--DIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 255 I--------TLPTTSIWSAKVLLNG--DIVVGGSDGRVRVFTV 287 (745)
T ss_pred E--------ecCccceEEEEEeeCC--CEEEeccCceEEEEEe
Confidence 2 2234478888888876 7999999999999973
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-20 Score=190.38 Aligned_cols=253 Identities=18% Similarity=0.272 Sum_probs=201.7
Q ss_pred ccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCc
Q 002086 429 RQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKAS 508 (969)
Q Consensus 429 ~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~ 508 (969)
|...-.+++.....+...++ |..+|++++|.+ ...+++|+.||.|+++|+.++...
T Consensus 33 WDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~---------------------- 88 (323)
T KOG1036|consen 33 WDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED---------------------- 88 (323)
T ss_pred ccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce----------------------
Confidence 44444455666555555555 999999999986 457999999999999999876432
Q ss_pred cCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE
Q 002086 509 SLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC 587 (969)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~ 587 (969)
.+..|...|.||.+++ .+.+++|+.|++|++||.+...+
T Consensus 89 ----------------------------------------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~ 128 (323)
T KOG1036|consen 89 ----------------------------------------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV 128 (323)
T ss_pred ----------------------------------------eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc
Confidence 3456999999999998 79999999999999999998777
Q ss_pred EEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE---EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002086 588 LKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD---WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS 664 (969)
Q Consensus 588 i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~---~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwD 664 (969)
...+.....|.|+.. .++.|++|+.|..|.+||+++..... .......+.|+++.|++.-+++++-||.|.+=.
T Consensus 129 ~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~ 205 (323)
T KOG1036|consen 129 VGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEY 205 (323)
T ss_pred ccccccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEc
Confidence 777777779999998 57899999999999999999865432 333456799999999999999999999999877
Q ss_pred cCCCceeeeeeeeecccc-----cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 665 IEDSKLHQLNQVDFQTKK-----KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 665 l~~~~~~~~~~~~~~~~~-----~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
+......+...+.+..+. .....+|.+|+|+|-. ..|++|+.||.|.+||..+.......+.....|.+++|+.
T Consensus 206 ~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 206 FDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM 284 (323)
T ss_pred cCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc
Confidence 766533222222222211 2223579999999986 7899999999999999887777666677778899999999
Q ss_pred CCCEEEEEeC
Q 002086 740 DGKYIISASE 749 (969)
Q Consensus 740 dg~~LaSgs~ 749 (969)
||..||+++.
T Consensus 285 dG~~LAia~s 294 (323)
T KOG1036|consen 285 DGSLLAIASS 294 (323)
T ss_pred CCCeEEEEec
Confidence 9999999985
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-20 Score=220.19 Aligned_cols=260 Identities=20% Similarity=0.296 Sum_probs=204.3
Q ss_pred ccccCEEEEEEeCCCCEEEEEe--CCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAG--EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs--~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
.|+..|++++.+|||..+|||| .|+.++||+.+.- +....
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~v--l~~~~------------------------------------ 52 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPV--LDEKE------------------------------------ 52 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccc--cchhh------------------------------------
Confidence 3556799999999999999999 8999999997621 00000
Q ss_pred CCCCCcccccceeeec-CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC----------C--------c
Q 002086 527 HSSPDYVHVPETVFSL-SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET----------K--------S 586 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~-~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t----------~--------~ 586 (969)
.+.. -.+.++....|.+.|.|+.|++ +.+||+|+.|+.|.||.... | +
T Consensus 53 ------------~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk 120 (942)
T KOG0973|consen 53 ------------EKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWK 120 (942)
T ss_pred ------------hhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceee
Confidence 0000 2456678889999999999999 89999999999999999872 0 1
Q ss_pred EEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002086 587 CLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS 664 (969)
Q Consensus 587 ~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwD 664 (969)
+..++ +|...|..++|+| ++.+|++++.|++|.||+..+.+.+ .+.+|...|-.+.|.|-|+||++-+.|++|+||.
T Consensus 121 ~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 121 VVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred EEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEE
Confidence 23333 8999999999999 9999999999999999999987655 4567889999999999999999999999999999
Q ss_pred cCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe----CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC-
Q 002086 665 IEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS----ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA- 739 (969)
Q Consensus 665 l~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs----~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp- 739 (969)
+.+..+.....-+ .........+..+.|+||| .+|++.. .-.++.|.+-.+........+|..++.++.|+|
T Consensus 200 t~dw~i~k~It~p--f~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 200 TSDWGIEKSITKP--FEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred cccceeeEeeccc--hhhCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence 8776554332221 1223445567889999999 7777762 334688888666666666777888999999998
Q ss_pred ----CCC------------EEEEEeCCCcEEEEEcCCCC
Q 002086 740 ----DGK------------YIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 740 ----dg~------------~LaSgs~Dg~I~IWdl~t~~ 762 (969)
..+ .+|+|+.|++|-||....++
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 112 57899999999999997643
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=200.90 Aligned_cols=220 Identities=20% Similarity=0.291 Sum_probs=179.2
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+|++.++.++..+.+|-..|+||.|+-||.+|+|||.||.|.+|++.+- +...
T Consensus 107 lWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l--v~a~------------------------- 159 (476)
T KOG0646|consen 107 LWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL--VSAD------------------------- 159 (476)
T ss_pred EEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee--cccc-------------------------
Confidence 5689999999999999999999999999999999999999999997631 0000
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEEEEe
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
-....+|++.|.+|+-+|+++.... +.+|+|+|.|.++++||+..+..+..+
T Consensus 160 -------------------------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 160 -------------------------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred -------------------------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 0013567889999999999999876 579999999999999999999999999
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-----------------eEEEEecCCC--CEEEEEEccCCCEEE
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-----------------LVVDWTDLHE--MVTAACYTPDGQNAL 652 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-----------------~~~~~~~~~~--~V~sv~fspdg~~La 652 (969)
.....+.+++.+| .+..+++|+.+|.|.+.++..- +...+.+|.+ .|+|++++-||..|+
T Consensus 215 ~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 215 TFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 9999999999999 8999999999999999887431 2334667776 899999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 653 IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 653 sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
+|+.||.++|||+.+.+++... ....++|+.+.+.|--+..++.-...-.+-.|+
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl--------~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~ 348 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTL--------QTSKGPVTNLQINPLERGIILFEHKQPSLPNPH 348 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHH--------hhhccccceeEeeccccceecccccCccCCchH
Confidence 9999999999999988765442 225688999998775433333333333344444
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=184.53 Aligned_cols=215 Identities=19% Similarity=0.261 Sum_probs=183.6
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
.++||..+++.|.|+. +++|.+++.|.++.||--.+|+.+-++ +|.+.|+|++.+. +..++++|+.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 5789999999999998 999999999999999999999999988 9999999999998 889999999999999999999
Q ss_pred ceEEEEecCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 627 RLVVDWTDLHEMVTAACYTPDGQNALIGSH-----KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 627 ~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-----dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
|+++.......+|..+.|+++|++++..+. .+.|.++|++.........- ...+...+...++.+.|.|-+ ..
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e-p~~kI~t~~skit~a~Wg~l~-~~ 161 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE-PYLKIPTPDSKITSALWGPLG-ET 161 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC-ceEEecCCccceeeeeecccC-CE
Confidence 999999999999999999999998887764 46899999985442111110 111224566899999999988 89
Q ss_pred EEEEeCCCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCC
Q 002086 702 VLVTSADSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAST 766 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t 766 (969)
|++|..||.|.+||..+...... ...|...|+.+.|++|..+++|++.|.+-++||+.+-+.+.+
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 99999999999999887544333 355677899999999999999999999999999998655444
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=202.91 Aligned_cols=224 Identities=19% Similarity=0.348 Sum_probs=180.4
Q ss_pred ceeeeEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
...-..|.||++.=++|+|++... +|++|+.|++|++||+.......
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~-------------------------------- 214 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED-------------------------------- 214 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC--------------------------------
Confidence 344457999999999999999544 89999999999999987422100
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCC--CcEEEEe-ecC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMET--KSCLKLF-AHN 594 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t--~~~i~~~-~h~ 594 (969)
....+...+.+|...|.+++|++ ..+|++++.|+.+.|||+++ .++.... +|.
T Consensus 215 ----------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~ 272 (422)
T KOG0264|consen 215 ----------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS 272 (422)
T ss_pred ----------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC
Confidence 01123457899999999999998 78999999999999999995 3333333 899
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCcee
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
+.|.|++|+|.++..|++|+.|++|++||+++. .+..+..|...|.+|.|+|+. ..|++++.|+.+.|||+..-...
T Consensus 273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 999999999988899999999999999999874 466788899999999999975 46778889999999999753222
Q ss_pred ee------eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 672 QL------NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 672 ~~------~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
+. ....+.....+|...|..+.|+|..+..|++.+.|+.+.||+...
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 11 111122334789999999999999999999999999999999653
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-21 Score=219.19 Aligned_cols=244 Identities=18% Similarity=0.310 Sum_probs=200.7
Q ss_pred CEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 453 SIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 453 ~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
.+..++|.. +.++|||++..|.|.+||+...
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~------------------------------------------------ 120 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKS------------------------------------------------ 120 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcc------------------------------------------------
Confidence 345667765 5679999999999999998741
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCC
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDD 608 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~ 608 (969)
...+.+..|..|...|.++.|++ ..+|++||.||+|++||++..+...++ +....|..|.|+|..++
T Consensus 121 ----------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 121 ----------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN 190 (839)
T ss_pred ----------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc
Confidence 11233346788999999999998 789999999999999999998877766 77889999999998899
Q ss_pred EEEEEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC
Q 002086 609 YFISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST 686 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~ 686 (969)
+|+++...|.+++||++... .+++..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+.+......+ ...
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-------nTi 263 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-------NTI 263 (839)
T ss_pred eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-------eec
Confidence 99999999999999998754 456788999999999999999999999999999999998765444332 346
Q ss_pred CCeEEEEEcCCCCceEEEEe--CCCcEEEEeCCcce-EEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCC
Q 002086 687 RKITGFQFSPSNPSEVLVTS--ADSRIRILDGLDIV-HKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs--~Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+|.++.|-|....+|++++ .|-.|+|||++... .......|...++.++|.. |...|.+++.||+|..-.+++.
T Consensus 264 apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 264 APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 78999999999988888875 47789999987644 3334455677788888865 5678999999999988777653
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=208.49 Aligned_cols=252 Identities=19% Similarity=0.286 Sum_probs=203.6
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
.+|++.-+.|+|.|+|++|+||+.||.|++|+....+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------------------------------ 47 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------------------------------ 47 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------------------------------
Confidence 47999999999999999999999999999999753210
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCC
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMD 606 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~ 606 (969)
.|- .+.-+...|.+++.. ..+|++|+.+++|.+|.+.+++.-..+ ..+-++.+++|+. +
T Consensus 48 -----------------~P~-ti~~~g~~v~~ia~~-s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~ 107 (933)
T KOG1274|consen 48 -----------------EPE-TIDISGELVSSIACY-SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-S 107 (933)
T ss_pred -----------------CCc-hhhccCceeEEEeec-ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-C
Confidence 000 111266777777765 369999999999999999998877555 6788999999998 8
Q ss_pred CCEEEEEECCCeEEEEeCCCc-eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCC
Q 002086 607 DDYFISGSLDAKVRIWSISDR-LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h 685 (969)
+.+++.|+.|-.|++.++.+. ....+.+|..+|.++.|+|++++||+.+.||.|+|||+.++.+...............
T Consensus 108 g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~ 187 (933)
T KOG1274|consen 108 GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL 187 (933)
T ss_pred CcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc
Confidence 999999999999999999775 5667788999999999999999999999999999999998876543322111111122
Q ss_pred CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEE--eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR--GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 686 ~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~--~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
...+..++|+|++ ..+++.+.|+.|.+|+.......+. ...+...+..+.|+|+|+|||+++.||.|.|||+++.+
T Consensus 188 s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 188 SRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred cceeeeeeecCCC-CeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence 5567889999998 6788889999999999776554443 33444558899999999999999999999999999743
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=199.69 Aligned_cols=247 Identities=17% Similarity=0.281 Sum_probs=186.5
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+|++....+..+|++|.|.|.+|++.. ..++|+|.|++|+.|.++. ..+.++.+..... .+........+...|
T Consensus 93 iWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~-gIdh~~~~~~FaTcG-- 166 (433)
T KOG0268|consen 93 IWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYL-GIDHHRKNSVFATCG-- 166 (433)
T ss_pred EEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecccccc-ccccccccccccccC--
Confidence 446666677788999999999999987 6799999999999999764 2222222110000 000000000000000
Q ss_pred CCCCcccccCCCCCCCCcccccceeeec-CCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSL-SEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
-...+|+. ...|++.+.--.+.|.++.|+| ...|++|+.|+.|.|||++++.+++..
T Consensus 167 --------------------e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KV 226 (433)
T KOG0268|consen 167 --------------------EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKV 226 (433)
T ss_pred --------------------ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcccee
Confidence 01123433 4568888888889999999999 578888889999999999999999888
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
-..-.-+.|+|+| +...|++|+.|..++.||++.- .+....+|...|..+.|+|.|+.|++|+.|.+|+||....+.
T Consensus 227 i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 227 ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred eeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence 7777778999999 8999999999999999999864 344567788999999999999999999999999999998776
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
...... ...-..|.|+.|+-|. +++++|+.|+.|++|..
T Consensus 306 SRdiYh-------tkRMq~V~~Vk~S~Ds-kyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 306 SRDIYH-------TKRMQHVFCVKYSMDS-KYIISGSDDGNVRLWKA 344 (433)
T ss_pred chhhhh-------HhhhheeeEEEEeccc-cEEEecCCCcceeeeec
Confidence 432211 1223468999999988 89999999999999983
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-20 Score=189.21 Aligned_cols=238 Identities=15% Similarity=0.243 Sum_probs=191.9
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+....|.++|.+++|+.||..+++|+.|+.+++||+.+++..
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~-------------------------------------- 107 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS-------------------------------------- 107 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee--------------------------------------
Confidence 446679999999999999999999999999999999987653
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQ 601 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~ 601 (969)
.+..|.++|.++.|-+ -.+|+|||.|++|+.||.+....+.++.-.+.|+++.
T Consensus 108 ------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~D 163 (347)
T KOG0647|consen 108 ------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAAD 163 (347)
T ss_pred ------------------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehh
Confidence 3456999999999987 3589999999999999999999999999999999998
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEE---EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVV---DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~---~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
.- ..+++++..+..|.+|+++++... ......-.+.||+..++.+..+.|+-+|.+.|..+........+.+..
T Consensus 164 v~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 164 VL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred cc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 84 578889999999999999776432 122244668999999999999999999999999998864422222211
Q ss_pred ccc---ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 679 QTK---KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 679 ~~~---~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
... .......|.+|+|+|.. ..|++++.||++.+||............+..+|++++|+.+|.++|-+.
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 111 01123467889999976 7999999999999999655444445567888999999999999887653
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=192.17 Aligned_cols=260 Identities=16% Similarity=0.201 Sum_probs=186.9
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
++.+.+.++.+.+|.. +.+++|+|++++| ++++.|+.|++||+.+++.+..+
T Consensus 17 d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-------------------------- 69 (300)
T TIGR03866 17 DTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-------------------------- 69 (300)
T ss_pred ECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec--------------------------
Confidence 5555666777776654 6789999999976 67778999999999877654321
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE-EEeCCCcEEEEECCCCcEEEEeec
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL-SSSMDKTVRLWDMETKSCLKLFAH 593 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~-Sgs~DgtV~IWDl~t~~~i~~~~h 593 (969)
..+. .+..+.|++ ++.++ +++.|+.|++||+.+++.+..+.+
T Consensus 70 -----------------------------------~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~ 113 (300)
T TIGR03866 70 -----------------------------------PSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV 113 (300)
T ss_pred -----------------------------------cCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence 1111 234678888 56554 456789999999999888888876
Q ss_pred CCCeEEEEEecCCCCEEEEEECCC-eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCcee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDA-KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLH 671 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg-~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~ 671 (969)
...+.+++|+| ++.+++++..++ .+.+||..+++..........+..++|+|++++|++++ .++.|++||+.+++..
T Consensus 114 ~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~ 192 (300)
T TIGR03866 114 GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI 192 (300)
T ss_pred CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee
Confidence 66788999999 899999888775 46788998887765544455678899999999886554 6899999999988754
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE-eCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA-SED 750 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg-s~D 750 (969)
.......... .........++|+|++...+++...++.|.+||..+...... ......+.+++|+|+|++|+++ +.+
T Consensus 193 ~~~~~~~~~~-~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 193 KKITFEIPGV-HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY-LLVGQRVWQLAFTPDEKYLLTTNGVS 270 (300)
T ss_pred eeeeeccccc-ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE-EEeCCCcceEEECCCCCEEEEEcCCC
Confidence 4322111000 011223456889999854445556677899999765433222 2233468899999999999886 468
Q ss_pred CcEEEEEcCCCC
Q 002086 751 SQVYVWKREEHR 762 (969)
Q Consensus 751 g~I~IWdl~t~~ 762 (969)
|.|++||+.+.+
T Consensus 271 ~~i~v~d~~~~~ 282 (300)
T TIGR03866 271 NDVSVIDVAALK 282 (300)
T ss_pred CeEEEEECCCCc
Confidence 999999999843
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-19 Score=185.57 Aligned_cols=276 Identities=20% Similarity=0.228 Sum_probs=214.9
Q ss_pred eeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEEC--CCeEEEE
Q 002086 547 FCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSL--DAKVRIW 622 (969)
Q Consensus 547 ~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~--Dg~I~IW 622 (969)
.+.+..-.+.|.++.|++ |.+|++++.|.+|+|||..+++.++++ .+...|..++|.. ..+.++.++. |.+|+..
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEE
Confidence 345556778999999998 899999999999999999999999988 4567888899987 5666666666 8899999
Q ss_pred eCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 623 SISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 623 Dl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
++.+.+.+. +.+|...|..++.+|-++.+++++.|++|++||++..+++... +...-..++|.|.| -+
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l----------~~~~~pi~AfDp~G-Li 154 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL----------NLSGRPIAAFDPEG-LI 154 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE----------ecCCCcceeECCCC-cE
Confidence 999887665 5568899999999999999999999999999999977654332 22334567899998 67
Q ss_pred EEEEeCCCcEEEEeCCcc----eEEEEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEeccc
Q 002086 702 VLVTSADSRIRILDGLDI----VHKFRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRN 776 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~----~~~~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~ 776 (969)
++++.....|++||.+.. ...+... ......+.+.|||||++|+.++..+.+++.|.-++....+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t---------- 224 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST---------- 224 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee----------
Confidence 777777779999997642 3333332 3456688999999999999999999999999877432111
Q ss_pred CCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCC-
Q 002086 777 HEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPP- 855 (969)
Q Consensus 777 ~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~p- 855 (969)
+......+.-+..++++|+++++.++..++.++.|...+++....+..|
T Consensus 225 ------------------------------fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~ 274 (311)
T KOG1446|consen 225 ------------------------------FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN 274 (311)
T ss_pred ------------------------------EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC
Confidence 1111112223467789999999999999999999999888777766665
Q ss_pred CCCccccccCCCCCCccccC
Q 002086 856 EEELSLISHDPGISESFTSN 875 (969)
Q Consensus 856 ee~l~~is~hP~~~~~~~~s 875 (969)
..++.++-+.|... +|+++
T Consensus 275 ~~~~~~~~fnP~~~-mf~sa 293 (311)
T KOG1446|consen 275 GGPVSCVRFNPRYA-MFVSA 293 (311)
T ss_pred CCCccccccCCcee-eeeec
Confidence 66667777888876 45543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=203.95 Aligned_cols=293 Identities=18% Similarity=0.278 Sum_probs=206.7
Q ss_pred EEEEEeC---CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 455 WTIKFSL---DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 455 ~~l~fSp---Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
++..|++ ....|+.+.+||.|.++|......
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f---------------------------------------------- 86 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF---------------------------------------------- 86 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhc----------------------------------------------
Confidence 4466765 345899999999999999864221
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEE---eecCCCeEEEEEecCCC
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKL---FAHNDYVTCIQFNPMDD 607 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~---~~h~~~V~sv~fsp~~~ 607 (969)
...+..+..+..|-..|.++.|.| ...|++++.|.++++||+.+..++.. ++|.+.|.+++|.|.+.
T Consensus 87 ---------r~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~ 157 (720)
T KOG0321|consen 87 ---------RLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNP 157 (720)
T ss_pred ---------chhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCC
Confidence 112223345677999999999999 67899999999999999999998865 49999999999999888
Q ss_pred CEEEEEECCCeEEEEeCCCceE----------------------------EEEecCCCCEEE---EEEccCCCEEEEEeC
Q 002086 608 DYFISGSLDAKVRIWSISDRLV----------------------------VDWTDLHEMVTA---ACYTPDGQNALIGSH 656 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~----------------------------~~~~~~~~~V~s---v~fspdg~~Lasgs~ 656 (969)
..|++|+.||.|.|||++-..+ .....+...|.. +.+..|...||+++.
T Consensus 158 ~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga 237 (720)
T KOG0321|consen 158 AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA 237 (720)
T ss_pred cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC
Confidence 9999999999999999864321 012222333444 556667888998776
Q ss_pred -CCcEEEEEcCCCceeeeeeeeecccccC---CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc----eEEEEeecC
Q 002086 657 -KGSCRLYSIEDSKLHQLNQVDFQTKKKS---STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI----VHKFRGFRN 728 (969)
Q Consensus 657 -dg~I~IwDl~~~~~~~~~~~~~~~~~~~---h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~----~~~~~~~~~ 728 (969)
|+.|+|||++.........-.-...... ....++++.....| .+|++.+.|+.|++|++... ...+.++..
T Consensus 238 ~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~ 316 (720)
T KOG0321|consen 238 ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN 316 (720)
T ss_pred CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcCchhhccCccc
Confidence 9999999999876432211111111111 24567888888877 57777777999999996542 333333333
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcc
Q 002086 729 TSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKK 808 (969)
Q Consensus 729 ~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~ 808 (969)
...-..-..+||+.+|++|+.|...++|.+.+.+. ....+..+.-+++|+.|.-...-+.+.+.++..+.+|...
T Consensus 317 ~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~-----~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 317 SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA-----PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred ceeeeeeecCCCCceEeccCCCcceeeeeecCccC-----ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 33333456799999999999999999999998643 3344555555666666655443344445577777777553
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-20 Score=190.06 Aligned_cols=286 Identities=15% Similarity=0.166 Sum_probs=209.3
Q ss_pred EEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec
Q 002086 557 VLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD 634 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~ 634 (969)
..|+.|++ |.+|++|+.||.|.|||+.+...-+++ +|..+|++++|++ ++.+|++++.|..|.+||+..+.++....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 78999999 999999999999999999998877777 8999999999999 99999999999999999999999999999
Q ss_pred CCCCEEEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE
Q 002086 635 LHEMVTAACYTPDGQN-ALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713 (969)
Q Consensus 635 ~~~~V~sv~fspdg~~-Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I 713 (969)
...+|+.+.|+|.... +++.-.+..-.+.++...+.. ..... ........-.+..|.+.| .++++|...|.+.+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d---~d~dln~sas~~~fdr~g-~yIitGtsKGkllv 179 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKD---DDGDLNSSASHGVFDRRG-KYIITGTSKGKLLV 179 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCC---CccccccccccccccCCC-CEEEEecCcceEEE
Confidence 9999999999996543 333334444556666543221 11100 001111112233577777 89999999999999
Q ss_pred EeCCcceEEEEeecC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCC
Q 002086 714 LDGLDIVHKFRGFRN-TSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWP 792 (969)
Q Consensus 714 wD~~~~~~~~~~~~~-~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~ 792 (969)
+|..+.......... ...|..+.|+..|++|+.-+.|..|+.|++..-... ++.
T Consensus 180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~--~r~----------------------- 234 (405)
T KOG1273|consen 180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE--GRD----------------------- 234 (405)
T ss_pred EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc--Ccc-----------------------
Confidence 996654333322222 356888999999999999999999999998752111 110
Q ss_pred CcccCCCCCccEEEcccccccCCCCcccccCCCCCCcccc-CCCCccccCCCCCCccccCCCCCC-CCccccccCCCCCC
Q 002086 793 GMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG-HSRRLLPPLPKKTNKVERVPSPPE-EELSLISHDPGISE 870 (969)
Q Consensus 793 ~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~-~~~~~L~~~~~~s~~~~~~l~~pe-e~l~~is~hP~~~~ 870 (969)
|+... -.....--...++..++||.+|+++.++ ...+.||.|.+..|++.+.|.+++ |.++.+.|||-.+.
T Consensus 235 ----~e~e~---~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~ 307 (405)
T KOG1273|consen 235 ----GEVEP---EHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI 307 (405)
T ss_pred ----CCcCh---hHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee
Confidence 00000 0000000123456778889999997765 455689999999999999999999 99999999999886
Q ss_pred ccccCCCccc
Q 002086 871 SFTSNSSSIR 880 (969)
Q Consensus 871 ~~~~s~~~~r 880 (969)
+.+-.+.+++
T Consensus 308 i~si~sg~v~ 317 (405)
T KOG1273|consen 308 IASIASGVVY 317 (405)
T ss_pred eeeccCCceE
Confidence 6655444333
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=192.07 Aligned_cols=261 Identities=22% Similarity=0.296 Sum_probs=204.5
Q ss_pred EecccccCEEEEEEeCCC--CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 446 EIQAHEGSIWTIKFSLDA--RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg--~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
..-+|.+.|+.+..++-+ .+.|+=+..|.|.||++... +..+.....
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~~----------------------------- 194 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSEPGL----------------------------- 194 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhcCccc-----------------------------
Confidence 355799999999988855 47777788999999998631 111000000
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEE----EeecCCCe
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLK----LFAHNDYV 597 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~----~~~h~~~V 597 (969)
.+-....+|+.++.+|...=++|+|+| ...|++|..-+.|++|...++.-.. ..+|+..|
T Consensus 195 --------------~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SV 260 (440)
T KOG0302|consen 195 --------------EVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSV 260 (440)
T ss_pred --------------cccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccch
Confidence 000124567889999999999999999 6789999999999999999876432 33799999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCc---eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDR---LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~---~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
-.++|+|.....|++|+.||+|+|||++.+ ..+....|...|+.|.|+..-.+|++|+.||+++|||++..+..+
T Consensus 261 EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~-- 338 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ-- 338 (440)
T ss_pred hhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC--
Confidence 999999988899999999999999999988 566778899999999999998899999999999999999876531
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc------------------ceEEEEeecCCCCeEEEE
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD------------------IVHKFRGFRNTSSQISAA 736 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~------------------~~~~~~~~~~~~~V~sl~ 736 (969)
.....+.|..+|++|.|+|.....|++++.|.+|.|||+.- ..+.+..|.....+..+.
T Consensus 339 ---pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~Kevh 415 (440)
T KOG0302|consen 339 ---PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVH 415 (440)
T ss_pred ---cceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhhe
Confidence 22334779999999999998889999999999999999421 012334455566677889
Q ss_pred EeCC-CCEEEEEeCCCcEEEEE
Q 002086 737 FNAD-GKYIISASEDSQVYVWK 757 (969)
Q Consensus 737 fspd-g~~LaSgs~Dg~I~IWd 757 (969)
|++. ..+|++.+.|| +.||.
T Consensus 416 WH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 416 WHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred eccCCCCeEEEecccc-eeEEE
Confidence 9985 45788888887 45554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-18 Score=191.80 Aligned_cols=249 Identities=15% Similarity=0.232 Sum_probs=205.2
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
-..+|.+|+|+.+.+.||.+-.||.|-||++..+=...
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~------------------------------------------ 61 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE------------------------------------------ 61 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee------------------------------------------
Confidence 46789999999999999999999999999987532222
Q ss_pred CCcccccceeeecCCCceeEeccC-CCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGH-LDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDD 607 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH-~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~ 607 (969)
..+.|+ ...|.+++|+++..|.+.+.+|.|.-||+.+++.+..+ ...+.|++++.+| .+
T Consensus 62 ------------------~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~ 122 (691)
T KOG2048|consen 62 ------------------PVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-EN 122 (691)
T ss_pred ------------------EEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-cc
Confidence 133344 45799999999999999999999999999999998887 5678999999999 88
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEE---ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 608 DYFISGSLDAKVRIWSISDRLVVDW---TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~~~~---~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
..++.|+.||.++.++...+.+... ....+.|.++.|+|++..++.|+.||.|++||...+.........+....+.
T Consensus 123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~ 202 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR 202 (691)
T ss_pred ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccC
Confidence 9999999999888888888776542 2334789999999999999999999999999999988766444434333344
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
...-|.++.|-.++ .|++|...|+|.+||.......-....|...|.+++..+++.++++++.|+.|..|...+.
T Consensus 203 ~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 203 EPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred CceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 55667888888765 8999999999999996654433333446677999999999999999999999999998874
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-20 Score=206.71 Aligned_cols=249 Identities=19% Similarity=0.302 Sum_probs=206.6
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
....++.|.+.|..+....+|+.|+++|.|-+|++|+...+..
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------------------------------------- 107 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------------------------------------- 107 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-------------------------------------
Confidence 4677999999999999999999999999999999999874320
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEe-cC-CcEEEEEeCCCcEEEEECCCCc--EEEEe-------
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSW-SR-SHLLLSSSMDKTVRLWDMETKS--CLKLF------- 591 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~f-s~-~~~L~Sgs~DgtV~IWDl~t~~--~i~~~------- 591 (969)
-.+.++..|.+-|.|+++ -+ ..++++|+.|+.|.|||+.++. .+..+
T Consensus 108 ----------------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 108 ----------------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred ----------------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 011256779999999999 45 7899999999999999999873 22222
Q ss_pred ---ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 002086 592 ---AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 592 ---~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~ 667 (969)
++...|++++.++ .+..|++|+..+.|++||.+++ +++.+.+|...|.++..++||..+++++.||+|++||+..
T Consensus 166 l~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred CCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 6888999999999 8889999999999999999986 4667889999999999999999999999999999999998
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
.+++... ..|...|.++..+|+- ..+++|+.|+.|+.-|+++............+|..+..+...+-+-++
T Consensus 245 QrCl~T~--------~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~Wvt 315 (735)
T KOG0308|consen 245 QRCLATY--------IVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVT 315 (735)
T ss_pred cceeeeE--------EeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceee
Confidence 8876654 4577889999999977 799999999999999987754333334445566667666544555777
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
+.|+.|+-|...-
T Consensus 316 Ttds~I~rW~~~~ 328 (735)
T KOG0308|consen 316 TTDSSIKRWKLEP 328 (735)
T ss_pred eccccceecCCcc
Confidence 8899999998764
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=184.02 Aligned_cols=289 Identities=18% Similarity=0.220 Sum_probs=217.7
Q ss_pred eccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc------------EEEE----eecCCCeEEEEEecCCCCEEE
Q 002086 550 FIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS------------CLKL----FAHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 550 l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~------------~i~~----~~h~~~V~sv~fsp~~~~~L~ 611 (969)
...|.+.|.++...+ +.++++|+.||.|.+||++... |+.. -+|...|.++.|-|.+...|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 456899999999987 8999999999999999997532 1111 158889999999999999999
Q ss_pred EEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccC---CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC
Q 002086 612 SGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPD---GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK 688 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspd---g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~ 688 (969)
+++.|.++++||..+-+....+...+.|++-+++|- .-++|+|..+-.|++.|+..+..... ..+|...
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~--------LsGHr~~ 190 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT--------LSGHRDG 190 (397)
T ss_pred cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--------eccccCc
Confidence 999999999999999999988899999999999984 34788899999999999999986544 3789999
Q ss_pred eEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---eEEEE------------eecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 689 ITGFQFSPSNPSEVLVTSADSRIRILDGLDI---VHKFR------------GFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~------------~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
|.++.|+|.....|++|+.||.|++||++.. ...+. ...|.+.+..++|+.||.++++++.|..+
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 9999999999888999999999999996643 22221 23456778999999999999999999999
Q ss_pred EEEEcCCCCccCCCc-eeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcccc
Q 002086 754 YVWKREEHRNASTGK-RAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG 832 (969)
Q Consensus 754 ~IWdl~t~~~~~t~k-~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~ 832 (969)
++|+..+++...... ++......+..+. +......+ ....
T Consensus 271 r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-------------~~~~~s~v--------------------------fv~~ 311 (397)
T KOG4283|consen 271 RVWNMESGRNTLREFGPIIHNQTTSFAVH-------------IQSMDSDV--------------------------FVLF 311 (397)
T ss_pred EEeecccCcccccccccccccccccceEE-------------Eeecccce--------------------------EEEE
Confidence 999999865422111 1111111111110 00000111 1122
Q ss_pred CCCCccccCCCCCCccccCCCCCCCCccccccCCCCCCccccCCCccccCCCC
Q 002086 833 HSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSNSSSIRSGDSP 885 (969)
Q Consensus 833 ~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s~~~~r~~~~~ 885 (969)
..+..++.+...++...+.+..|-+.+.+....|.|.+-|+.+=...-+-++|
T Consensus 312 p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 312 PNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 23355667777777778888888888888889999999998853333344444
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=193.24 Aligned_cols=203 Identities=22% Similarity=0.358 Sum_probs=170.5
Q ss_pred CCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC----
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD---- 626 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~---- 626 (969)
-.++|.+++-+| +.+|+.|+..|.|++|.+.+|..+.++ +|-..|+|+.|+- ++.+|++|+.||.|.+|++..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeeccc
Confidence 346799999999 777777779999999999999999887 8999999999998 999999999999999998732
Q ss_pred ------ceEEEEecCCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 627 ------RLVVDWTDLHEMVTAACYTPDG--QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 627 ------~~~~~~~~~~~~V~sv~fspdg--~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
.....+..|.-+|+.+...+.| .+|++++.|.+|++||+..+.++.... ....+.+++.+|.+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~---------fp~si~av~lDpae 229 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT---------FPSSIKAVALDPAE 229 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe---------cCCcceeEEEcccc
Confidence 2244566788889998887753 589999999999999999998765533 35679999999987
Q ss_pred CceEEEEeCCCcEEEEeCCc------------------ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 699 PSEVLVTSADSRIRILDGLD------------------IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 699 ~~~l~sgs~Dg~I~IwD~~~------------------~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..+++|+.+|.|.+.+..+ ....+.++.+...|+|++++-||.+|++|+.||.|+|||+.+
T Consensus 230 -~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 230 -RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred -cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 8999999999999987332 123445555556899999999999999999999999999998
Q ss_pred CCccCC
Q 002086 761 HRNAST 766 (969)
Q Consensus 761 ~~~~~t 766 (969)
.+++.+
T Consensus 309 ~Q~iRt 314 (476)
T KOG0646|consen 309 KQCIRT 314 (476)
T ss_pred HHHHHH
Confidence 766544
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-21 Score=215.11 Aligned_cols=236 Identities=25% Similarity=0.454 Sum_probs=204.0
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+++-+|...|.|+..-..++.+++|+.|..+-||.+..-.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~---------------------------------------- 61 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN---------------------------------------- 61 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc----------------------------------------
Confidence 3467899999999997788999999999999999875211
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQF 602 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~f 602 (969)
.+..|.+|..+|.+|.|+. ..+|++|+.+|+|++||++..+.++++ +|...+.+|.|
T Consensus 62 ---------------------~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 62 ---------------------AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDF 120 (825)
T ss_pred ---------------------hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeee
Confidence 1124789999999999998 788999999999999999999887766 99999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCC-CceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSIS-DRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~-~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+| -+.+++.|+.|+.+++||++ .|....+..|...+.++.|+|+|++++.|+.|.+++|||+..+++...+
T Consensus 121 ~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef------- 192 (825)
T KOG0267|consen 121 HP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF------- 192 (825)
T ss_pred cc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc-------
Confidence 99 89999999999999999999 4555566667788999999999999999999999999999988865443
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
..|...+..+.|+|.. .+++.|+.|++|++||+.+....-.+......|.+..|+|++..+++|..+.
T Consensus 193 -~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 193 -KSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred -ccccccccccccCchh-hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 6789999999999987 7888999999999999887666555555677899999999999999887654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.2e-19 Score=199.56 Aligned_cols=205 Identities=20% Similarity=0.344 Sum_probs=176.1
Q ss_pred eeeEecc-cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 443 LCQEIQA-HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 443 l~~~L~g-H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
.+.++.+ |...|-+++|. +..|.+|+.|+.|..+|+...+...
T Consensus 251 ~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~---------------------------------- 294 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV---------------------------------- 294 (484)
T ss_pred ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh----------------------------------
Confidence 3444555 99999999998 6789999999999999987543221
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~s 599 (969)
..+.+|...|..+.|++ +.+|++|+.|+.|.|||....+.+..+ .|...|.+
T Consensus 295 --------------------------~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 295 --------------------------STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA 348 (484)
T ss_pred --------------------------hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence 02678999999999999 899999999999999999766666555 99999999
Q ss_pred EEEecCCCCEEEEE--ECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEE--EeCCCcEEEEEcCCCceeeeee
Q 002086 600 IQFNPMDDDYFISG--SLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALI--GSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 600 v~fsp~~~~~L~sg--s~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Las--gs~dg~I~IwDl~~~~~~~~~~ 675 (969)
++|+|....+||+| +.|+.|++||..++..+........|..+.|++..+.|++ |..++.|.||+..+.+...
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~--- 425 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA--- 425 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee---
Confidence 99999888999986 5699999999999999999999999999999999877765 6678899999998855433
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
...+|...|..++++|++ ..+++|+.|.++++|+...
T Consensus 426 -----~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 426 -----ELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred -----eecCCcceeEEEEECCCC-CEEEEecccCcEEeccccC
Confidence 237899999999999998 8999999999999999665
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=196.95 Aligned_cols=285 Identities=21% Similarity=0.326 Sum_probs=206.5
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEE-------EeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVM-------SMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l-------~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
+.||++.|+++.|+|++..|++++.|+++.||.-.+..-+ ....+.........+.+........+....+
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~-- 340 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF-- 340 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE--
Confidence 4599999999999999999999999999999987654111 1111111112222222222111111111111
Q ss_pred ccccCCCCCCCCcccccceeeecCC----CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC-CcEEEEe--
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSE----KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET-KSCLKLF-- 591 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~----k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t-~~~i~~~-- 591 (969)
..|.... .+...+.||.+.|++++|.| +.+|++.+.|.+-||+-.-. ......+
T Consensus 341 ------------------hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 341 ------------------HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred ------------------EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc
Confidence 1111111 22335689999999999999 99999999999999987652 2223333
Q ss_pred --ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-------------------------------------------
Q 002086 592 --AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD------------------------------------------- 626 (969)
Q Consensus 592 --~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~------------------------------------------- 626 (969)
-|...++|++|-+ ....|++|.....+|+|+...
T Consensus 403 PQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred cccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 5999999999997 578899999999999998511
Q ss_pred c----------------------------------eEEEEecCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCC
Q 002086 627 R----------------------------------LVVDWTDLHEMVTAACYTPDGQNALIGSHKG-----SCRLYSIED 667 (969)
Q Consensus 627 ~----------------------------------~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg-----~I~IwDl~~ 667 (969)
+ ++.++++|...|++++.+|+++++|+++... .|++|+..+
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence 0 0014567778899999999999999988644 689999987
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-EEEE---eecCCCCeEEEEEeCCCCE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV-HKFR---GFRNTSSQISAAFNADGKY 743 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~-~~~~---~~~~~~~V~sl~fspdg~~ 743 (969)
....+ ....|.-.|+.++|+|++ .+|++.+.|.++.+|...+.. ..+. ...|..-|.+++|+|++.+
T Consensus 562 W~~~~--------~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 562 WLQVQ--------ELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred hhhhh--------eecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence 76543 237899999999999999 899999999999999854321 1111 3456667889999999999
Q ss_pred EEEEeCCCcEEEEEcCCC
Q 002086 744 IISASEDSQVYVWKREEH 761 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~t~ 761 (969)
++|++.|.+|++|.....
T Consensus 633 FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEecCCceEEEEeccCc
Confidence 999999999999999874
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-17 Score=164.72 Aligned_cols=270 Identities=14% Similarity=0.185 Sum_probs=202.0
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
+..+..|. ...+|.+++|+|.|.+.|.|+..++.+|-....-..++ .++..+..+
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r--~~hea~~~p---------------------- 77 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLR--HAHEAAKQP---------------------- 77 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcc--cccccccCC----------------------
Confidence 34444454 57789999999999999999999999987643211110 011000000
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE------EEEeec
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC------LKLFAH 593 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~------i~~~~h 593 (969)
.....+.-+.|.+.|+|.+|+| +++|++|+.|++|++.-+....+ +..--|
T Consensus 78 ----------------------p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmh 135 (350)
T KOG0641|consen 78 ----------------------PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMH 135 (350)
T ss_pred ----------------------CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeec
Confidence 0001123456899999999999 99999999999999987765433 233369
Q ss_pred CCCeEEEEEecC---CCCEEEEEE-CCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 594 NDYVTCIQFNPM---DDDYFISGS-LDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 594 ~~~V~sv~fsp~---~~~~L~sgs-~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
.+.|..++|... .+.+|++++ .|..|++-|...++.+. +.+|.+-|.++ ++-+|-++++|+.|.+|++||++-.
T Consensus 136 dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~ 214 (350)
T KOG0641|consen 136 DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN 214 (350)
T ss_pred CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc
Confidence 999999999641 234566654 47788888888887655 55666777665 5567889999999999999999987
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
..+......+... .-....|..++..|.| .+|++|-.|....+||++........+.|...|.++.|+|...||++|+
T Consensus 215 ~~v~~l~~~~~~~-glessavaav~vdpsg-rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 215 SCVNTLDNDFHDG-GLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS 292 (350)
T ss_pred ceeeeccCcccCC-CcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec
Confidence 7665433222111 1223679999999998 8999999999999999998888888889999999999999999999999
Q ss_pred CCCcEEEEEcCC
Q 002086 749 EDSQVYVWKREE 760 (969)
Q Consensus 749 ~Dg~I~IWdl~t 760 (969)
.|..|++-|+..
T Consensus 293 yd~~ikltdlqg 304 (350)
T KOG0641|consen 293 YDMKIKLTDLQG 304 (350)
T ss_pred ccceEEEeeccc
Confidence 999999999975
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-18 Score=178.09 Aligned_cols=250 Identities=19% Similarity=0.314 Sum_probs=186.4
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
.+|.+-|.|+.|.+-|+.+|||+.|++|+|||.....-.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~----------------------------------------- 48 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT----------------------------------------- 48 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc-----------------------------------------
Confidence 479999999999999999999999999999997532110
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCC-------c--EEE-EeecC
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETK-------S--CLK-LFAHN 594 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~-------~--~i~-~~~h~ 594 (969)
-.....++.|.+.|..|.|.+ |+.+++++.|++|.||.=... + ... .....
T Consensus 49 ----------------W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr 112 (361)
T KOG2445|consen 49 ----------------WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR 112 (361)
T ss_pred ----------------eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCC
Confidence 011125778999999999964 899999999999999975311 1 112 22677
Q ss_pred CCeEEEEEecC-CCCEEEEEECCCeEEEEeCCCceEE------EEe--------cCCCCEEEEEEccC---CCEEEEEeC
Q 002086 595 DYVTCIQFNPM-DDDYFISGSLDAKVRIWSISDRLVV------DWT--------DLHEMVTAACYTPD---GQNALIGSH 656 (969)
Q Consensus 595 ~~V~sv~fsp~-~~~~L~sgs~Dg~I~IWDl~~~~~~------~~~--------~~~~~V~sv~fspd---g~~Lasgs~ 656 (969)
..|+.|.|.|. -+-.+++++.||.||||+.-.---+ ..+ .+.....|+.|+|. ..+|++|+.
T Consensus 113 ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~ 192 (361)
T KOG2445|consen 113 SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSD 192 (361)
T ss_pred cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcc
Confidence 89999999993 2457999999999999997542111 111 24456789999974 468888887
Q ss_pred C-----CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC---ceEEEEeCCCcEEEEeCCc----------
Q 002086 657 K-----GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP---SEVLVTSADSRIRILDGLD---------- 718 (969)
Q Consensus 657 d-----g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~---~~l~sgs~Dg~I~IwD~~~---------- 718 (969)
+ +.++||....+..... .......|..+|+.|+|.|.-+ .+|++++.|| |+||.+..
T Consensus 193 e~a~~~~~~~Iye~~e~~rKw~----kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~ 267 (361)
T KOG2445|consen 193 EDAPHLNKVKIYEYNENGRKWL----KVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEV 267 (361)
T ss_pred cCCccccceEEEEecCCcceee----eehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcc
Confidence 6 5788887765432111 2233368999999999999532 4688999999 99998542
Q ss_pred ---------ceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 719 ---------IVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 719 ---------~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.+.+.. .-.|.+.|..+.|+-.|..|++.|.||+|++|...
T Consensus 268 ~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 268 LAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 112222 33567789999999999999999999999999875
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-19 Score=194.27 Aligned_cols=238 Identities=20% Similarity=0.350 Sum_probs=200.7
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
-..-|.++.+.|||+-|++||.-.+|.|||+..-.....
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprik----------------------------------------- 502 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK----------------------------------------- 502 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchh-----------------------------------------
Confidence 356799999999999999999999999999874322110
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDD 607 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~ 607 (969)
.++..-.-..++++.+| .+..+++..||.|.|||+.+...+..| +|.+.+.||.+++ ++
T Consensus 503 ------------------aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dG 563 (705)
T KOG0639|consen 503 ------------------AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DG 563 (705)
T ss_pred ------------------hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CC
Confidence 01112223456788888 678888999999999999999999888 8999999999999 99
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 608 DYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
..|-+|+.|.+|+.||++.+..+........|.++.++|++.+|++|-+++.+.|......+..+. ..|..
T Consensus 564 tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql---------hlheS 634 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL---------HLHES 634 (705)
T ss_pred ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceee---------ccccc
Confidence 999999999999999999998887777888999999999999999999999999988876654332 56788
Q ss_pred CeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 688 KITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
-|.++.|.+.| +++++.+.|.-+..|.+--....|... ....|+++.++.|.+||+||+.|..-.||.+
T Consensus 635 cVLSlKFa~cG-kwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 635 CVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEEEEecccC-ceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999998 899999999999999966555555543 4567999999999999999999988888875
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-19 Score=197.20 Aligned_cols=304 Identities=17% Similarity=0.317 Sum_probs=214.9
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCC---ccCCCCCC-CC
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKA---SSLDGSSP-NP 517 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~---~~~~g~~~-~~ 517 (969)
.+...++||++.|.||...|.|.+||+|+.||+|+||.+.+|.++....... .+..+.+.+.... ....+... ..
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCceEEe
Confidence 4556789999999999999999999999999999999999999998644321 2223333332221 11111110 00
Q ss_pred -CcccccCCC---------CCCCCcccccceeeecC-----CCceeEeccCCCCEEEEEecC-CcEEEEEeCC---CcEE
Q 002086 518 -PPEKKKKGK---------HSSPDYVHVPETVFSLS-----EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---KTVR 578 (969)
Q Consensus 518 -~~~~~~~~~---------~~~~~~~~~~~~v~~~~-----~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---gtV~ 578 (969)
.....+... ......-......|... .+.++....|...|..|.|+. |.||++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 000000000 00000000011223222 233567778999999999998 9999998654 5789
Q ss_pred EEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeC
Q 002086 579 LWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSH 656 (969)
Q Consensus 579 IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~ 656 (969)
|.++.......-| ...+.|.++.|+| ...+|++++. ..|+|||+..+.++. +......|..++++|.|..|++|+.
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 9999887766666 5678899999999 6667776664 679999998876553 4455577999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC-------c----ceEEEEe
Q 002086 657 KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL-------D----IVHKFRG 725 (969)
Q Consensus 657 dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-------~----~~~~~~~ 725 (969)
|+.+..||+.-.... ......|...++.++|++.- .++++|+.||++.|+... + .+..+.+
T Consensus 628 d~k~~WfDldlsskP-------yk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g 699 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKP-------YKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG 699 (733)
T ss_pred CCeeEEEEcccCcch-------hHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC
Confidence 999999999765321 22336789999999999987 689999999999998621 1 2233444
Q ss_pred ec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 726 FR--NTSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 726 ~~--~~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
|. ....|..+.|+|...+|++++.||+|++|
T Consensus 700 H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 700 HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ceeecccceEeecccCCCceEEecCCCceEEee
Confidence 43 23558889999999999999999999998
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-19 Score=192.12 Aligned_cols=205 Identities=21% Similarity=0.304 Sum_probs=164.0
Q ss_pred eccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 550 FIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 550 l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
-.+|++.|.++.|+. .+.|++||.|.+|++||+.++++..++. |.+.|.++.|+|....+|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 457999999999997 7899999999999999999999999995 8999999999998889999999999999999985
Q ss_pred c-eEEEEecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCc-eeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 627 R-LVVDWTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSK-LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 627 ~-~~~~~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~-~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
. ..-......+.|-.++|.|... .+++++.||+++-+|++... +.. ..+.|..+|.+|++++..+.+++
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw--------t~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW--------TLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee--------EEEeccCCcceEEecCCCCccee
Confidence 2 2223334456799999999754 67788899999999999874 222 22789999999999999999999
Q ss_pred EEeCCCcEEEEeCCcceE--EEEeecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCC
Q 002086 704 VTSADSRIRILDGLDIVH--KFRGFRNTSSQISAAFNADG-KYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~~~--~~~~~~~~~~V~sl~fspdg-~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+++.|+.|++|+...... .....-.-+...|.++.|+- -+|+.|+..+.++|||+.+..
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 999999999999543211 11111111224566777765 457788888899999998743
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=195.30 Aligned_cols=252 Identities=17% Similarity=0.275 Sum_probs=186.0
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+....+|.++|..++|-|...+|++++.|.++++||+.+.++...
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~----------------------------------- 137 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG----------------------------------- 137 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc-----------------------------------
Confidence 456779999999999999666999999999999999998766541
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcE--------------
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSC-------------- 587 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~-------------- 587 (969)
..+.||++.|.+++|.+ ...|++|+.||.|.|||++....
T Consensus 138 ------------------------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~ 193 (720)
T KOG0321|consen 138 ------------------------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH 193 (720)
T ss_pred ------------------------eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence 14678999999999998 57999999999999999863220
Q ss_pred ------EE--------EeecCCC----eEEEEEecCCCCEEEEEEC-CCeEEEEeCCCceEEE---------EecC---C
Q 002086 588 ------LK--------LFAHNDY----VTCIQFNPMDDDYFISGSL-DAKVRIWSISDRLVVD---------WTDL---H 636 (969)
Q Consensus 588 ------i~--------~~~h~~~----V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl~~~~~~~---------~~~~---~ 636 (969)
.+ -..+... |+.+.|- |+..|++++. |+.|+|||++...... +..+ .
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs 271 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRS 271 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccce
Confidence 00 0123333 5555554 7889999888 9999999998754321 1122 2
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 637 EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 637 ~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
..+.++.....|.+|++.+.|+.|++|++..........+. ..........-..+|++ .++++|+.|...++|.+
T Consensus 272 ~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s----g~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~v 346 (720)
T KOG0321|consen 272 VGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS----GKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVV 346 (720)
T ss_pred eeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc----CcccceeeeeeecCCCC-ceEeccCCCcceeeeee
Confidence 35788888888999999999999999999887654332211 01111122233467887 89999999999999997
Q ss_pred CcceEEE-EeecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCC
Q 002086 717 LDIVHKF-RGFRNTSSQISAAFNAD-GKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 717 ~~~~~~~-~~~~~~~~V~sl~fspd-g~~LaSgs~Dg~I~IWdl~t~ 761 (969)
....... ....|...|++++|.|. -.-++|+++|..++||++..+
T Consensus 347 s~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 347 SSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 6543322 23456677999999883 345777799999999999765
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-17 Score=182.18 Aligned_cols=284 Identities=12% Similarity=0.070 Sum_probs=193.5
Q ss_pred CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeec
Q 002086 463 ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSL 542 (969)
Q Consensus 463 g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 542 (969)
+.+++|++.|+.|++||+.+++.+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~------------------------------------------------------ 26 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRT------------------------------------------------------ 26 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEE------------------------------------------------------
Confidence 35789999999999999987765442
Q ss_pred CCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEE-EECCCeE
Q 002086 543 SEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFIS-GSLDAKV 619 (969)
Q Consensus 543 ~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~s-gs~Dg~I 619 (969)
+.+|. .+.+++|++ +..+ ++++.++.|++||+.+++.+..+.....+..++|+| +++.+++ ++.++.|
T Consensus 27 -------~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 27 -------FPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP-NGKILYIANEDDNLV 97 (300)
T ss_pred -------EECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC-CCCEEEEEcCCCCeE
Confidence 22232 356789998 5555 677889999999999998887665444567889999 7776654 5568999
Q ss_pred EEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC-cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 620 RIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG-SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 620 ~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg-~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
++||+.+...+........+..++|+|+|.+++++..++ .+.+||..+.+...... ....+..++|+|++
T Consensus 98 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~---------~~~~~~~~~~s~dg 168 (300)
T TIGR03866 98 TVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL---------VDQRPRFAEFTADG 168 (300)
T ss_pred EEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE---------cCCCccEEEECCCC
Confidence 999999887776666555678999999999999988765 56778988766533211 12345678999998
Q ss_pred CceEEEEeCCCcEEEEeCCcceE--EEEeec-----CCCCeEEEEEeCCCCEEEE-EeCCCcEEEEEcCCCCccCCCcee
Q 002086 699 PSEVLVTSADSRIRILDGLDIVH--KFRGFR-----NTSSQISAAFNADGKYIIS-ASEDSQVYVWKREEHRNASTGKRA 770 (969)
Q Consensus 699 ~~~l~sgs~Dg~I~IwD~~~~~~--~~~~~~-----~~~~V~sl~fspdg~~LaS-gs~Dg~I~IWdl~t~~~~~t~k~~ 770 (969)
..+++++..++.|++||...... .+.... .......++|+|++++++. .+.++.|.+||+.+. +..
T Consensus 169 ~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~------~~~ 242 (300)
T TIGR03866 169 KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY------EVL 242 (300)
T ss_pred CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC------cEE
Confidence 43334555799999999765432 222111 1112346889999998654 455678999999763 211
Q ss_pred EEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcccc-CCCCccccCCCCCCccc
Q 002086 771 IITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG-HSRRLLPPLPKKTNKVE 849 (969)
Q Consensus 771 ~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~-~~~~~L~~~~~~s~~~~ 849 (969)
...... ..+....++|+++++++. ..++.+..|...++...
T Consensus 243 ~~~~~~--------------------------------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 243 DYLLVG--------------------------------------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred EEEEeC--------------------------------------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 110000 001133468888888765 45788999998888765
Q ss_pred cCCCCCCCCccccc
Q 002086 850 RVPSPPEEELSLIS 863 (969)
Q Consensus 850 ~~l~~pee~l~~is 863 (969)
..+... +.+.++.
T Consensus 285 ~~~~~~-~~~~~~~ 297 (300)
T TIGR03866 285 KSIKVG-RLPWGVV 297 (300)
T ss_pred EEEEcc-cccceeE
Confidence 554433 3334443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-18 Score=173.83 Aligned_cols=227 Identities=22% Similarity=0.346 Sum_probs=175.5
Q ss_pred ecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 447 IQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 447 L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
..-|.|.|+++...+ .|+|+++|+.||.|.|||++........ + .+ ...
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s-~---li----------------------~k~---- 88 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS-G---LI----------------------AKH---- 88 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc-c---ce----------------------ehe----
Confidence 346999999999998 7899999999999999999853211100 0 00 000
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEe
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFN 603 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fs 603 (969)
.. + .....-.+|.-.|..+.|-| ..+|.+++.|.++++||..+-+....|...+.|++-+++
T Consensus 89 -------------~c-~--v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamS 152 (397)
T KOG4283|consen 89 -------------KC-I--VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMS 152 (397)
T ss_pred -------------ee-e--ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcC
Confidence 00 0 00012357899999999999 689999999999999999999999999999999999999
Q ss_pred cCC--CCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCc-eee------
Q 002086 604 PMD--DDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNA-LIGSHKGSCRLYSIEDSK-LHQ------ 672 (969)
Q Consensus 604 p~~--~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~L-asgs~dg~I~IwDl~~~~-~~~------ 672 (969)
|.. ..++++|..|-.|++-|+.+|..-. +.+|.+.|.++.|+|..+++ ++|+.||.|++||++... +..
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 953 3577888888999999999997654 66788999999999988765 579999999999998641 111
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
....+.......|.+.+.+++|..++ .++++.+.|..+++|+..+..
T Consensus 233 ~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred CccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCc
Confidence 11111222346789999999999998 899999999999999965443
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-18 Score=184.60 Aligned_cols=304 Identities=15% Similarity=0.216 Sum_probs=221.9
Q ss_pred ccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecc
Q 002086 370 LRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQA 449 (969)
Q Consensus 370 ~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~g 449 (969)
+.+.+.+..+.-..-.+.+.++.||+....+.. ++ .++...++-.+++.+. +++.+.-
T Consensus 198 l~~krlkDaNa~~ps~~~I~sv~FHp~~plllv----aG---------~d~~lrifqvDGk~N~---------~lqS~~l 255 (514)
T KOG2055|consen 198 LNIKRLKDANAAHPSHGGITSVQFHPTAPLLLV----AG---------LDGTLRIFQVDGKVNP---------KLQSIHL 255 (514)
T ss_pred eeeEeecccccCCcCcCCceEEEecCCCceEEE----ec---------CCCcEEEEEecCccCh---------hheeeee
Confidence 334444444444445566777888877654222 22 2233334433443333 4455555
Q ss_pred cccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
-.-+|.+++|.|+|. .++++|.-..+..||+.+.+....-
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~--------------------------------------- 296 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK--------------------------------------- 296 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeecccccccccc---------------------------------------
Confidence 678999999999999 9999999999999999887664410
Q ss_pred CCCcccccceeeecCCCceeEeccC-CCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGH-LDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMD 606 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH-~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~ 606 (969)
.+.|+ ...+.....++ +++|+..+..|.|.|....+++.+..+.-.+.|..++|+. +
T Consensus 297 --------------------~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsS-d 355 (514)
T KOG2055|consen 297 --------------------PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSS-D 355 (514)
T ss_pred --------------------CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEec-C
Confidence 11122 23445566677 7899999999999999999999999999999999999997 8
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEEecCCCCE--EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 607 DDYFISGSLDAKVRIWSISDRLVVDWTDLHEMV--TAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V--~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
+..|++++.+|.|.+||++...++..+...+.| +++|.++++.+||+|+..|.|.|||..+...... .........
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~--PkPik~~dN 433 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN--PKPIKTVDN 433 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC--CCchhhhhh
Confidence 899999999999999999999888777666655 5778889999999999999999999765322110 001112244
Q ss_pred CCCCeEEEEEcCCCCceEEEEeC--CCcEEEEeCCcceEEEEee----cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 685 STRKITGFQFSPSNPSEVLVTSA--DSRIRILDGLDIVHKFRGF----RNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~--Dg~I~IwD~~~~~~~~~~~----~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
-...|+.++|+++. +.|+.++. +..+++-.+..+. +|..+ ..-+.|+|++|+|.|.|||.|.++|.|.+|.+
T Consensus 434 Ltt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~T-VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 434 LTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCT-VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hheeeeeeeeCcch-hhhhhhhhccccceEEEecccee-eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 56789999999998 77777754 5678887744322 22221 23456899999999999999999999999998
Q ss_pred C
Q 002086 759 E 759 (969)
Q Consensus 759 ~ 759 (969)
.
T Consensus 512 ~ 512 (514)
T KOG2055|consen 512 H 512 (514)
T ss_pred c
Confidence 5
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-18 Score=176.21 Aligned_cols=240 Identities=20% Similarity=0.337 Sum_probs=188.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
-.|+.|++-|.+||.|+.||.|.|||+.+...-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia----------------------------------------------- 58 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA----------------------------------------------- 58 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh-----------------------------------------------
Confidence 789999999999999999999999999864321
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEE
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFIS 612 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~s 612 (969)
..+.+|..+|.+++|++ +..|+|+|.|..|.+||+..|.+++.+....+|+.+.|+|.+.+.+++
T Consensus 59 --------------r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va 124 (405)
T KOG1273|consen 59 --------------RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVA 124 (405)
T ss_pred --------------hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEE
Confidence 15678999999999999 899999999999999999999999999999999999999977788877
Q ss_pred EECCCeEEEEeCCCceEEEE--ec---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 613 GSLDAKVRIWSISDRLVVDW--TD---LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 613 gs~Dg~I~IWDl~~~~~~~~--~~---~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
.-.+..-.+-++.......+ .. ......+..|.+.|+++++|...|.+.+||..+.++...+.+. ...
T Consensus 125 ~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit-------s~~ 197 (405)
T KOG1273|consen 125 TIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT-------SVQ 197 (405)
T ss_pred EEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec-------hhe
Confidence 77666666666655322211 11 1122345579999999999999999999999998876654432 135
Q ss_pred CeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE-----------EEeecCCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 002086 688 KITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK-----------FRGFRNTSSQISAAFNADGKYIISASE-DSQVYV 755 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~-----------~~~~~~~~~V~sl~fspdg~~LaSgs~-Dg~I~I 755 (969)
.|..+.|+..+ ..|++.+.|..||.|+....... +....+...-.+++|+.||.|++.++. -..++|
T Consensus 198 ~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYI 276 (405)
T KOG1273|consen 198 AIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYI 276 (405)
T ss_pred eeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEE
Confidence 68888898877 89999999999999996543221 111122333457899999999988875 345999
Q ss_pred EEcCCCC
Q 002086 756 WKREEHR 762 (969)
Q Consensus 756 Wdl~t~~ 762 (969)
|.-..+.
T Consensus 277 WE~~~Gs 283 (405)
T KOG1273|consen 277 WEKSIGS 283 (405)
T ss_pred EecCCcc
Confidence 9988753
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=188.81 Aligned_cols=243 Identities=16% Similarity=0.330 Sum_probs=198.3
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.|..-|.++.+|...+++.|||. |.|+|||+... +...++..+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~p-------g~k~PvsqLd---------------------------- 460 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQP-------GNKSPVSQLD---------------------------- 460 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCC-------CCCCcccccc----------------------------
Confidence 59999999999999999999985 66999998642 1111111110
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEec
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNP 604 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp 604 (969)
......-|..+...+ +..|++|+.-.+|.|||+......... ...-..++++.+|
T Consensus 461 ---------------------cl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp 519 (705)
T KOG0639|consen 461 ---------------------CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 519 (705)
T ss_pred ---------------------ccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC
Confidence 111234577778887 899999999999999999876543222 2234678899999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
+.+..+++..||.|.|||+.+..++ .+.+|.+.+.||.++++|..|.+|+-|.+|+-||++.+...+..
T Consensus 520 -DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh--------- 589 (705)
T KOG0639|consen 520 -DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH--------- 589 (705)
T ss_pred -ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh---------
Confidence 9999999999999999999988655 57788899999999999999999999999999999998765543
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.....|.++.++|.+ .+|++|-.++.+.|..... ..++..+.|...|.++.|.+.|+++++.+.|+.+..|...-
T Consensus 590 dF~SQIfSLg~cP~~-dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 590 DFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred hhhhhheecccCCCc-cceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCcc
Confidence 335679999999988 8999999999999988554 34577788899999999999999999999999999999876
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-19 Score=205.06 Aligned_cols=190 Identities=23% Similarity=0.480 Sum_probs=168.6
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
|.+|+.+|-+|.|+++..+|++|+.+|+|++||+++++.++
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr--------------------------------------- 106 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR--------------------------------------- 106 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh---------------------------------------
Confidence 78999999999999999999999999999999998655433
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEec
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNP 604 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp 604 (969)
+|.||...+..+.|+| +.++++|+.|+.+++||++...|...+ +|...|.++.|+|
T Consensus 107 ----------------------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 107 ----------------------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP 164 (825)
T ss_pred ----------------------hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC
Confidence 6778999999999999 899999999999999999999999888 6999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
+|.+++.|+.|.+++|||+..|++...+. |...+..+.|+|..-+++.|+.|+++++||+++.+.+... .
T Consensus 165 -~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~--------~ 235 (825)
T KOG0267|consen 165 -DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG--------K 235 (825)
T ss_pred -CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc--------C
Confidence 99999999999999999999999886555 8899999999999999999999999999999987654332 4
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeC
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
.....|.++.|+|++ ..+++|..
T Consensus 236 ~~~~~v~~~~fn~~~-~~~~~G~q 258 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDG-KIVLSGEQ 258 (825)
T ss_pred CccCCceeeeecCCc-eeeecCch
Confidence 447889999999998 55655543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.8e-18 Score=182.50 Aligned_cols=262 Identities=17% Similarity=0.228 Sum_probs=199.1
Q ss_pred ccccceeeeEecccccCEEEEEEeCCC--CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDA--RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg--~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
++..+......+-|.+.|++++|+|.. +++|+|..-|.|-+||+.+.+.
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~----------------------------- 222 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK----------------------------- 222 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------------------
Confidence 444555667788899999999999954 4899999999999999963211
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF- 591 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~- 591 (969)
....+..+..|..+|.++.|+| ...+++.|+||+|++-|++......++
T Consensus 223 ----------------------------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s 274 (498)
T KOG4328|consen 223 ----------------------------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLS 274 (498)
T ss_pred ----------------------------ccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhh
Confidence 1112346778999999999999 579999999999999999987654444
Q ss_pred --ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcC
Q 002086 592 --AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIE 666 (969)
Q Consensus 592 --~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~ 666 (969)
.....+.++.|+. +...++.+..=|.+.+||++++. ...+.-|...|..|+++|.. .+|++++.|++.+|||++
T Consensus 275 ~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 275 LDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred cCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehh
Confidence 2345677888887 66667777777799999998764 34455566789999999965 467899999999999998
Q ss_pred CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC----cceEEEE-eecC----CCCeEEEEE
Q 002086 667 DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL----DIVHKFR-GFRN----TSSQISAAF 737 (969)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~----~~~~~~~-~~~~----~~~V~sl~f 737 (969)
........ ......|...|.+..|+|.+.. |++.+.|..|+|||.. ....... .|.+ ........|
T Consensus 354 ~l~~K~sp----~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W 428 (498)
T KOG4328|consen 354 QLRGKASP----FLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAW 428 (498)
T ss_pred hhcCCCCc----ceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhhee
Confidence 75443220 1122578999999999999965 9999999999999963 1111111 1111 223456789
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 738 NADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 738 spdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.|+..++++|..-..|-|+|-..+
T Consensus 429 ~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 429 DPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred CCCccEEEEeccCcceeEEcCCCC
Confidence 999999999999999999998763
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-18 Score=194.06 Aligned_cols=198 Identities=18% Similarity=0.375 Sum_probs=160.8
Q ss_pred CEEEEEecC--CcEEEEEeCCCcEEEEECCC---CcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE
Q 002086 556 DVLDLSWSR--SHLLLSSSMDKTVRLWDMET---KSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV 629 (969)
Q Consensus 556 ~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t---~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~ 629 (969)
.+.+|.|.. .++|+|++..|.|.+||+.. .+.+..| .|+..+.++.|++...++|++|+.||+|++||++...-
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 345678876 79999999999999999987 4455555 89999999999998899999999999999999998765
Q ss_pred EE-EecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 630 VD-WTDLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 630 ~~-~~~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
.. +......|..|.|+|. +.+|+++...|.+.+||++.... ...++..|.++|.|+.|+|+. .+|++|+.
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-------~~~k~~AH~GpV~c~nwhPnr-~~lATGGR 240 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-------CEKKLTAHNGPVLCLNWHPNR-EWLATGGR 240 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-------HHHHhhcccCceEEEeecCCC-ceeeecCC
Confidence 44 4445578999999994 67899999999999999997654 223347899999999999955 89999999
Q ss_pred CCcEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCE-EEEEeC--CCcEEEEEcCCC
Q 002086 708 DSRIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKY-IISASE--DSQVYVWKREEH 761 (969)
Q Consensus 708 Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~-LaSgs~--Dg~I~IWdl~t~ 761 (969)
|+.|+|||..... ..........+|.++.|-|+..+ |++++. |-.|+|||+..+
T Consensus 241 DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 241 DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred CccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 9999999966322 22223345567899999998765 566554 778999999864
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-17 Score=171.13 Aligned_cols=218 Identities=20% Similarity=0.301 Sum_probs=177.5
Q ss_pred cccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCC--EEEEEeCCCcEEEEecccceEEEeecCCccCc
Q 002086 419 KNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDAR--FLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496 (969)
Q Consensus 419 ~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~--~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v 496 (969)
..+..+.|| |++....++.|-.|.+.|++|.|.++-. .|++|+.||.|.+|++..-+++.
T Consensus 60 ssDetI~IY---------Dm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~--------- 121 (362)
T KOG0294|consen 60 SSDETIHIY---------DMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK--------- 121 (362)
T ss_pred CCCCcEEEE---------eccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee---------
Confidence 345556655 5555556677888999999999999765 89999999999999998655443
Q ss_pred ccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC
Q 002086 497 HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK 575 (969)
Q Consensus 497 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg 575 (969)
.+++|.+.|+.++.+| +++-++.+.|+
T Consensus 122 ----------------------------------------------------slK~H~~~Vt~lsiHPS~KLALsVg~D~ 149 (362)
T KOG0294|consen 122 ----------------------------------------------------SLKAHKGQVTDLSIHPSGKLALSVGGDQ 149 (362)
T ss_pred ----------------------------------------------------eecccccccceeEecCCCceEEEEcCCc
Confidence 6788999999999999 88889999999
Q ss_pred cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEe
Q 002086 576 TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 576 tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs 655 (969)
.+++||+-+|+.-....-...-+.|.|+| .+.+|+.++.+ .|-||.+.+..+.........+.|+.|. ++..|++|.
T Consensus 150 ~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~ 226 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGG 226 (362)
T ss_pred eeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec-CCceEEEec
Confidence 99999999998777765555555699999 89988888775 4999999988877766666778888877 456899999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc--CCCCceEEEEeCCCcEEEEeCCc
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS--PSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs--pd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
.++.|.+||..+..+... ..+|..+|..+.+- |.+ .+|++++.||.|++||...
T Consensus 227 d~~~i~~~D~ds~~~~~~--------~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPLTE--------FLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred CCceEEEeccCCCcccee--------eecchhheeeeEEEecCCc-eEEEEeccCceEEEEEccc
Confidence 999999999998554322 27899999999843 344 7999999999999999653
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=174.29 Aligned_cols=246 Identities=22% Similarity=0.367 Sum_probs=185.0
Q ss_pred ccccCEEEEEEeCC----CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 449 AHEGSIWTIKFSLD----ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 449 gH~~~I~~l~fSpD----g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
.|...-+.++|+-| ..+||.||.-|.|+|.|+.++++..
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~------------------------------------- 129 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK------------------------------------- 129 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-------------------------------------
Confidence 48888999999874 3489999999999999998766543
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe----ecCCCeE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF----AHNDYVT 598 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~----~h~~~V~ 598 (969)
.+.+|...|..|.|+| .++++++|.|.+|++||+++..|+.+| +|.+.|.
T Consensus 130 ------------------------~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 130 ------------------------NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred ------------------------ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 5678999999999999 579999999999999999999999998 6999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-----------------------------EecCCCCEEEEEEccCCC
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-----------------------------WTDLHEMVTAACYTPDGQ 649 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-----------------------------~~~~~~~V~sv~fspdg~ 649 (969)
++.|++ ++.+|++++.|..|++|++...+... ..-|...|-|+.|- |+
T Consensus 186 SvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd 262 (385)
T KOG1034|consen 186 SVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD 262 (385)
T ss_pred EEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh
Confidence 999999 99999999999999999997432110 11123344455554 57
Q ss_pred EEEEEeCCCcEEEEEcCC-Ccee-e----eeeeeecccccCCCCCeEE--EEEcCCCCceEEEEeCCCcEEEEeCCcce-
Q 002086 650 NALIGSHKGSCRLYSIED-SKLH-Q----LNQVDFQTKKKSSTRKITG--FQFSPSNPSEVLVTSADSRIRILDGLDIV- 720 (969)
Q Consensus 650 ~Lasgs~dg~I~IwDl~~-~~~~-~----~~~~~~~~~~~~h~~~It~--l~fspd~~~~l~sgs~Dg~I~IwD~~~~~- 720 (969)
++++=+.++.|..|..-. .+.. . ...........-....|.- .+|.|-. ..|+.|...|.|++||+....
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCC
Confidence 889988889999998721 1110 0 0000011111222334444 4556655 789999999999999976432
Q ss_pred ---EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 721 ---HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 721 ---~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.++........|...+|+.||.+|+..++|++|.-||..
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 233334455678899999999999999999999999864
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=170.61 Aligned_cols=289 Identities=17% Similarity=0.222 Sum_probs=201.0
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc-----EEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEE
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS-----CLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW 622 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~-----~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IW 622 (969)
.|+||.+.|++++|+. +++|+|++.|++|+||+++... +++.--.-+..+.+.|.|.....++++-...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 6899999999999997 8999999999999999997532 333222233668899999555566677777789999
Q ss_pred eCCCce-------EEEE------ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCe
Q 002086 623 SISDRL-------VVDW------TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI 689 (969)
Q Consensus 623 Dl~~~~-------~~~~------~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I 689 (969)
-+...+ .+.+ ..|.-.+..+-...++.+|++++.|..|.+|+++ ++.+... ......-
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i--------dtnq~~n 231 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI--------DTNQSSN 231 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee--------ccccccc
Confidence 874321 1111 1223346667777788999999999999999999 5443322 3345556
Q ss_pred EEEEEcCCCCceEEEEeCCCcEEEEeC--------CcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 690 TGFQFSPSNPSEVLVTSADSRIRILDG--------LDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 690 t~l~fspd~~~~l~sgs~Dg~I~IwD~--------~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+..+.+|+| .++++++..--|++|.. .+....+....|...|..++|+++...++|.+.||+++|||++-.
T Consensus 232 ~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 232 YDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred cceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 778899998 89999999999999982 234566677788899999999999999999999999999998741
Q ss_pred CccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccC
Q 002086 762 RNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPL 841 (969)
Q Consensus 762 ~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~ 841 (969)
-.. ++...++.. . ...-...+..|.....||.++- ++++....|..|
T Consensus 311 Y~~--~qDpk~Lk~-----------------------------g-~~pl~aag~~p~RL~lsP~g~~-lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 311 YEA--GQDPKILKE-----------------------------G-SAPLHAAGSEPVRLELSPSGDS-LAVSFGSDLKVF 357 (420)
T ss_pred Eec--CCCchHhhc-----------------------------C-CcchhhcCCCceEEEeCCCCcE-EEeecCCceEEE
Confidence 000 000000000 0 0111223445555667777743 445555566666
Q ss_pred CCCCCccccCC-CCCCCCccccccCCCCCCccccCCCccc
Q 002086 842 PKKTNKVERVP-SPPEEELSLISHDPGISESFTSNSSSIR 880 (969)
Q Consensus 842 ~~~s~~~~~~l-~~pee~l~~is~hP~~~~~~~~s~~~~r 880 (969)
....++.+..+ ..|++++.+|+|.|..--+.+.++-.+|
T Consensus 358 ~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vr 397 (420)
T KOG2096|consen 358 ASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVR 397 (420)
T ss_pred EcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeee
Confidence 65555554443 6799999999999876666666665555
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=178.16 Aligned_cols=205 Identities=17% Similarity=0.286 Sum_probs=170.1
Q ss_pred eEeccCCCCEEEEEecC--C-cEEEEEeCCCcEEEEECCCCcE----EEEe-ecCCCeEEEEEecCCCCEEEEEECCCeE
Q 002086 548 CSFIGHLDDVLDLSWSR--S-HLLLSSSMDKTVRLWDMETKSC----LKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKV 619 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~--~-~~L~Sgs~DgtV~IWDl~t~~~----i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I 619 (969)
....-|.+.|++++|+| . +++++|..-|+|-+||+.+.+. +..+ .|..+|.+|.|+|.+...+++.+.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 35667899999999999 4 7899999999999999963332 2233 8999999999999888999999999999
Q ss_pred EEEeCCCceEEE---EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 620 RIWSISDRLVVD---WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 620 ~IWDl~~~~~~~---~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
++-|+.+...-. .......+..+.|+.+...++++..=|...+||+++..... .....|...|..++++|
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~-------~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY-------ENLRLHKKKITSVALNP 332 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc-------hhhhhhhcccceeecCC
Confidence 999998865333 33334567888999998999999988899999999876421 11255777999999999
Q ss_pred CCCceEEEEeCCCcEEEEeCCcceE----EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIVH----KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~~----~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
..+.+|++++.|++++|||+++... .+....|...|.++.|||.+..|+|.+.|..|+|||..
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 9999999999999999999775432 35566788899999999988889999999999999984
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=168.50 Aligned_cols=210 Identities=18% Similarity=0.315 Sum_probs=168.1
Q ss_pred ceeeeEecccccCEEEEEEeC--CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 441 LHLCQEIQAHEGSIWTIKFSL--DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSp--Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.+++.+|.||+++|+.++|-. -|.+||+|+.||.|.||.-++|+-.+
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k------------------------------- 94 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTK------------------------------- 94 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhh-------------------------------
Confidence 356788999999999999987 79999999999999999977653211
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCC-c-EE--EEe
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETK-S-CL--KLF 591 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~-~-~i--~~~ 591 (969)
......|...|++++|.| +-.|++++.||.|.|.+++.. . .. ..+
T Consensus 95 ----------------------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~ 146 (299)
T KOG1332|consen 95 ----------------------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF 146 (299)
T ss_pred ----------------------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence 124567999999999998 678999999999999998765 2 22 233
Q ss_pred ecCCCeEEEEEecCC--C-----------CEEEEEECCCeEEEEeCCCce---EEEEecCCCCEEEEEEccCC----CEE
Q 002086 592 AHNDYVTCIQFNPMD--D-----------DYFISGSLDAKVRIWSISDRL---VVDWTDLHEMVTAACYTPDG----QNA 651 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~--~-----------~~L~sgs~Dg~I~IWDl~~~~---~~~~~~~~~~V~sv~fspdg----~~L 651 (969)
.|.-.|++++|.|.. + ..|++|+.|..|+||+...+. -..+.+|.+.|+.++|.|.- .+|
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceee
Confidence 899999999999831 2 469999999999999998863 22367788999999999964 479
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 652 LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 652 asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
++++.||++.||..+......... ........+..+.|+..| ..|++++.|+.|.+|.
T Consensus 227 AS~SqDg~viIwt~~~e~e~wk~t-----ll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKDEEYEPWKKT-----LLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWK 284 (299)
T ss_pred EEecCCCcEEEEEecCccCccccc-----ccccCCcceEEEEEeccc-cEEEEecCCcEEEEEE
Confidence 999999999999887332111111 113356779999999998 8999999999999997
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=179.01 Aligned_cols=210 Identities=18% Similarity=0.294 Sum_probs=169.2
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--CCEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--EMVTA 641 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--~~V~s 641 (969)
..++++|+..++|+|||++...+.+.+ +|...|++|.++- .+.+|++++..|.|.|-.+.++.....+.+. ..|.-
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 489999999999999999976666655 8999999999998 8899999999999999999998776666655 45679
Q ss_pred EEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 642 ACYTPDGQNAL-IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 642 v~fspdg~~La-sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
+.|++..++++ +++.+|.|.+||+....... .....|..+...|+|+|.++.+|++.+.|..|++||.....
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~-------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF-------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCccc-------chhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 99999877654 68999999999998765422 22367899999999999999999999999999999976432
Q ss_pred EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEe
Q 002086 721 HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVA 788 (969)
Q Consensus 721 ~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~ 788 (969)
. ........+...++|.++|.+|+.|+..|.|+.||++..+ .++.....+...++|..|...
T Consensus 243 s-~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-----~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 243 S-TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-----APVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred c-cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC-----CCceEeeecccceeEEEeeec
Confidence 2 2222345567899999999999999999999999999732 234444444455677766654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-17 Score=174.60 Aligned_cols=251 Identities=22% Similarity=0.305 Sum_probs=192.3
Q ss_pred ecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 447 IQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 447 L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
+.||+++|..++|+| +...||+||.|.+|.||++-.+.+...
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------------------------- 119 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------------------------- 119 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-------------------------------------
Confidence 679999999999999 667999999999999999875433221
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEe
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFN 603 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fs 603 (969)
...|+..|.||+..|--+.|+| .+.|++++.|.+|.|||+.+++.+..+.|.+.|+++.|+
T Consensus 120 -----------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn 182 (472)
T KOG0303|consen 120 -----------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFN 182 (472)
T ss_pred -----------------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEec
Confidence 1256678999999999999999 799999999999999999999999889999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEEEEe-cCC-CCEEEEEEccCCCEEEEEe---CCCcEEEEEcCCCceeeeeeeee
Q 002086 604 PMDDDYFISGSLDAKVRIWSISDRLVVDWT-DLH-EMVTAACYTPDGQNALIGS---HKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 604 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-~~~-~~V~sv~fspdg~~Lasgs---~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
. ++.+|++++.|.+|+|||.++++++... .|. .....+.|-.+|..+-+|- .+..+-+||..+.......+
T Consensus 183 ~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~--- 258 (472)
T KOG0303|consen 183 R-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ--- 258 (472)
T ss_pred c-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeE---
Confidence 9 9999999999999999999999988765 444 3355677888888555554 46789999987654321111
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
.......|.---|.++..-.+++|-.|+.||.|...+ ..+.+..+....+...+.|-|...+=+ +..-..++
T Consensus 259 ---elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRGl~V--s~cEI~rf 333 (472)
T KOG0303|consen 259 ---ELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRGLDV--SKCEIARF 333 (472)
T ss_pred ---EeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccccccc--hHHHHHHH
Confidence 1233455666668888866778888999999999654 245555555566667777777543222 22334556
Q ss_pred EEcCC
Q 002086 756 WKREE 760 (969)
Q Consensus 756 Wdl~t 760 (969)
|++.+
T Consensus 334 yKl~~ 338 (472)
T KOG0303|consen 334 YKLHE 338 (472)
T ss_pred HHhhc
Confidence 66554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-17 Score=175.76 Aligned_cols=285 Identities=15% Similarity=0.167 Sum_probs=216.2
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
.+.|++|.|+|...+|++||.|++++||.++....
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------------------------- 247 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------------------------- 247 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC---------------------------------------------
Confidence 57899999999999999999999999999863111
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEe---ecC-CCeEEEEEec
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLF---AHN-DYVTCIQFNP 604 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~-~~V~sv~fsp 604 (969)
..++.+.--..+|.+.+|.| +. .+++++....++.||+.+.+..+.- ++. ..+....++|
T Consensus 248 --------------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 248 --------------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH 313 (514)
T ss_pred --------------hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC
Confidence 01123333456889999999 65 8999999999999999998877654 343 4577778889
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
++++|+..+..|.|.+....+++.+..+...+.|..++|+.+++.|++.+.+|.|.+||++...+.....- .
T Consensus 314 -d~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-------~ 385 (514)
T KOG2055|consen 314 -DSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-------D 385 (514)
T ss_pred -CCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-------c
Confidence 99999999999999999999999999999999999999999999999999999999999999876554321 1
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc------ceEEEEeecCCCCeEEEEEeCCCCEEEEEeC--CCcEEEE
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLD------IVHKFRGFRNTSSQISAAFNADGKYIISASE--DSQVYVW 756 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~------~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~--Dg~I~IW 756 (969)
..-.-+.++.++++ .+|++|+..|.|.|||... .........-...|+++.|++|+++||.++. +..+++-
T Consensus 386 G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLV 464 (514)
T KOG2055|consen 386 GSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLV 464 (514)
T ss_pred CccceeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEE
Confidence 12234567777877 7999999999999999433 2222233334567899999999999998875 4566666
Q ss_pred EcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCC
Q 002086 757 KREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRR 836 (969)
Q Consensus 757 dl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~ 836 (969)
-+.+. ++-.-||.. ...-+...+..|||.+-+++-+.+.+
T Consensus 465 HvPS~------------------------TVFsNfP~~----------------n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 465 HVPSC------------------------TVFSNFPTS----------------NTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred eccce------------------------eeeccCCCC----------------CCcccceEEEEecCCCceEEeecCCC
Confidence 55541 111112222 11112344677899888888888888
Q ss_pred ccccCCC
Q 002086 837 LLPPLPK 843 (969)
Q Consensus 837 ~L~~~~~ 843 (969)
.+..|..
T Consensus 505 rv~l~kL 511 (514)
T KOG2055|consen 505 RVHLFKL 511 (514)
T ss_pred ceeeEee
Confidence 8888853
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-17 Score=174.57 Aligned_cols=212 Identities=19% Similarity=0.324 Sum_probs=164.8
Q ss_pred ceeeeEecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
.+.+.++.+|.+.=++|+|||-. -.|+||.--+.|++|...+|.-..
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-------------------------------- 248 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-------------------------------- 248 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee--------------------------------
Confidence 45567789999999999999932 258888888899999987643211
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCC---cEEEEeecC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETK---SCLKLFAHN 594 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~---~~i~~~~h~ 594 (969)
... -|.+|+..|-+|+|+| ...|++||.||+|+|||++.+ .++.+-.|.
T Consensus 249 -----------------------d~~---Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 249 -----------------------DQR---PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred -----------------------cCc---cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 111 3567999999999999 789999999999999999988 567777999
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce----EEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCc
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL----VVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~ 669 (969)
..|+.|.|+. ...+|++|+.||+++|||++.-+ +..+..|..+|++|.|+|.. ..|++++.|..|.|||+.-..
T Consensus 303 sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 303 SDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred CceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999999998 66699999999999999998643 34677888999999999964 567788999999999996432
Q ss_pred e------eeee---eeeeccc-ccCCCCCeEEEEEcCCCCceEEEEeCCCcE
Q 002086 670 L------HQLN---QVDFQTK-KKSSTRKITGFQFSPSNPSEVLVTSADSRI 711 (969)
Q Consensus 670 ~------~~~~---~~~~~~~-~~~h~~~It~l~fspd~~~~l~sgs~Dg~I 711 (969)
- .... .++.+.. ....+..+..+.|+++.+.++++++.||--
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 2 0000 0000000 022356788899999998999999988853
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=172.83 Aligned_cols=244 Identities=16% Similarity=0.219 Sum_probs=195.0
Q ss_pred eeeeEeccccc-CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 442 HLCQEIQAHEG-SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 442 ~l~~~L~gH~~-~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+...|.||++ .|-+|+|+ ++..|++.+.+|.|.-||+.+++...
T Consensus 59 ~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~--------------------------------- 104 (691)
T KOG2048|consen 59 FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKY--------------------------------- 104 (691)
T ss_pred eeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeE---------------------------------
Confidence 34556777764 69999999 55678899999999999999877655
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEE--e-ecCCC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKL--F-AHNDY 596 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~--~-~h~~~ 596 (969)
.+....+.|++++.+| +..++.|+.||.+.+++...++.... + ..++.
T Consensus 105 ----------------------------~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sR 156 (691)
T KOG2048|consen 105 ----------------------------NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSR 156 (691)
T ss_pred ----------------------------EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccce
Confidence 3444668899999999 88999999999888888887776543 2 45689
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-----EecCC----CCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-----WTDLH----EMVTAACYTPDGQNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-----~~~~~----~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~ 667 (969)
|.++.|+| ++..|++|+.||.|++||...+.-+. +.... .-|.++.|-.+ ..|++|...|+|.+||...
T Consensus 157 vLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~ 234 (691)
T KOG2048|consen 157 VLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF 234 (691)
T ss_pred EEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC
Confidence 99999999 89999999999999999999887555 22222 34788888855 5899999999999999999
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc----eEEEEeecCCCCeEEEEEeCCCCE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI----VHKFRGFRNTSSQISAAFNADGKY 743 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~----~~~~~~~~~~~~V~sl~fspdg~~ 743 (969)
+.+.+.. ..|...|.+++..+++ ..+++++.|+.|..|..... +.......|...|.+++..++ .
T Consensus 235 gTLiqS~--------~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~ 303 (691)
T KOG2048|consen 235 GTLIQSH--------SCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--A 303 (691)
T ss_pred cchhhhh--------hhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--e
Confidence 8865443 6789999999999987 79999999999988874432 222233346667889988877 8
Q ss_pred EEEEeCCCcEEEEEcCC
Q 002086 744 IISASEDSQVYVWKREE 760 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~t 760 (969)
|++|+.|..+.+-....
T Consensus 304 l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 304 LISGGRDFTLAICSSRE 320 (691)
T ss_pred EEecceeeEEEEccccc
Confidence 99999999999877665
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=185.77 Aligned_cols=261 Identities=20% Similarity=0.286 Sum_probs=192.4
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
++..|.+.|..+.|.+-...|++|+.||+|++|+++....-
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s--------------------------------------- 329 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS--------------------------------------- 329 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------------------------------
Confidence 78899999999999999999999999999999999531000
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc----------EE-EEeec
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS----------CL-KLFAH 593 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~----------~i-~~~~h 593 (969)
-...-+++.+|.+|.++|.|+++.. +..+++|+.||+|+.|++.... .. ...+|
T Consensus 330 --------------~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh 395 (577)
T KOG0642|consen 330 --------------AEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH 395 (577)
T ss_pred --------------cccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecc
Confidence 0023467789999999999999998 8999999999999999765211 11 23399
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD--LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~--~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
++.|+.+++++ ....|++++.||+|++|+........+.. ..+..+.+.+-... ++....+.....+++.+.+..
T Consensus 396 tdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev~ 472 (577)
T KOG0642|consen 396 TDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEVV 472 (577)
T ss_pred ccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch--hHhhhhhcccccccchhhhhh
Confidence 99999999999 78889999999999999998877633222 22344555554432 222222333444444333322
Q ss_pred eeeeeeec--ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 672 QLNQVDFQ--TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 672 ~~~~~~~~--~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
....+... .........+..+.++|.+ .+.+++..|+.|+++|.......+....|...++++++.|+|.+|++++.
T Consensus 473 s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~ 551 (577)
T KOG0642|consen 473 SDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH 551 (577)
T ss_pred hheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecC
Confidence 22111100 0011223457778888887 79999999999999998877777777778889999999999999999999
Q ss_pred CCcEEEEEcCCCCc
Q 002086 750 DSQVYVWKREEHRN 763 (969)
Q Consensus 750 Dg~I~IWdl~t~~~ 763 (969)
|+.|++|++..+.+
T Consensus 552 d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 552 DGSVRLWKLDVKTC 565 (577)
T ss_pred Cceeehhhccchhe
Confidence 99999999987543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=178.33 Aligned_cols=207 Identities=18% Similarity=0.276 Sum_probs=171.0
Q ss_pred ecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 447 IQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
-.+|+++|..|.|+..- +.||+||.|.+|++||+.+|++..
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~-------------------------------------- 280 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS-------------------------------------- 280 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce--------------------------------------
Confidence 45899999999999854 489999999999999999877644
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc-EEEEeecCCCeEEEEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS-CLKLFAHNDYVTCIQF 602 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~-~i~~~~h~~~V~sv~f 602 (969)
.+..|.+.|.++.|++ ...|++|+.|++|.+.|.+... .-..+...+.|-.++|
T Consensus 281 -----------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 281 -----------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAW 337 (463)
T ss_pred -----------------------ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEe
Confidence 4556999999999998 7899999999999999999533 3345578899999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeec
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
.|.....|+++..||+|+-+|++.. .+.....|...|.++++++.- .++++++.++.+++|++..........-
T Consensus 338 ~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~--- 414 (463)
T KOG0270|consen 338 DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH--- 414 (463)
T ss_pred cCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc---
Confidence 9988899999999999999999875 355677899999999999865 4677899999999999987654322211
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
....+...|+++.|+-+..++.|+..+.++|||+....
T Consensus 415 ---~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 415 ---SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ---cccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 11233478889999988899999999999999976543
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-18 Score=194.73 Aligned_cols=250 Identities=20% Similarity=0.389 Sum_probs=189.9
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
+..+.+..|.||..+|+|+.|...|.+++||+.|..|+||..+++.++.
T Consensus 178 qkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA------------------------------- 226 (1113)
T KOG0644|consen 178 QKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA------------------------------- 226 (1113)
T ss_pred HHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc-------------------------------
Confidence 3445566788999999999999999999999999999999988766544
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
...||.+.|++++.+. +.+++++|.|..|++|.+..+.++.++ +|++.
T Consensus 227 ------------------------------s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga 276 (1113)
T KOG0644|consen 227 ------------------------------SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA 276 (1113)
T ss_pred ------------------------------cCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc
Confidence 5678999999999987 778999999999999999999998776 99999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE-----ecCCCCEEEEEEccCCCEEEEEeCCC-------------
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW-----TDLHEMVTAACYTPDGQNALIGSHKG------------- 658 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-----~~~~~~V~sv~fspdg~~Lasgs~dg------------- 658 (969)
|++|+|+| +.+.+.||++++||.+-...... .....-+.++.|..++..+++|+.|+
T Consensus 277 vtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~ 351 (1113)
T KOG0644|consen 277 VTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWR 351 (1113)
T ss_pred eeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhh
Confidence 99999999 33788999999999872111110 01112233344444444444444443
Q ss_pred ------------------------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE
Q 002086 659 ------------------------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 659 ------------------------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw 714 (969)
.+.+|++.++.+. ....+|...+..+.++|.++.....++.||.+.||
T Consensus 352 ~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~--------H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iw 423 (1113)
T KOG0644|consen 352 SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL--------HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIW 423 (1113)
T ss_pred ccceEEEeccccccccceeeeeeeEeeeeecccchhh--------hhhcccccceeeeeecCCCcHhhhhccCCCceEee
Confidence 4445555544432 22367888999999999998888999999999999
Q ss_pred eCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 715 DGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 715 D~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
|+......-........+....||+||..++....-|.++|...-..+
T Consensus 424 di~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 424 DIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 977644332222335667788999999999999999999998876543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-16 Score=175.09 Aligned_cols=288 Identities=18% Similarity=0.209 Sum_probs=200.7
Q ss_pred CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 545 KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 545 k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.....+.||++.|.+|...+ +..|++|+.||+|+||.+.++.|+.++...+.|.||+|+|.....++++.....+.|.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 34457899999999999999 99999999999999999999999999999999999999995444555555555555554
Q ss_pred CCCc--------------------------------------eEEEEecCCCCEEEEEEccCCCEEEEEeCC---CcEEE
Q 002086 624 ISDR--------------------------------------LVVDWTDLHEMVTAACYTPDGQNALIGSHK---GSCRL 662 (969)
Q Consensus 624 l~~~--------------------------------------~~~~~~~~~~~V~sv~fspdg~~Lasgs~d---g~I~I 662 (969)
..-| -+...+.+...|..+.|+..|.||++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 3111 012345566789999999999999987654 47889
Q ss_pred EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCC
Q 002086 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGK 742 (969)
Q Consensus 663 wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~ 742 (969)
+++.....+.. .....+.|.++.|+|..+ +|+++ ....|+|||+.....+-+.......|..++++|.|.
T Consensus 551 HQLSK~~sQ~P--------F~kskG~vq~v~FHPs~p-~lfVa-Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 551 HQLSKRKSQSP--------FRKSKGLVQRVKFHPSKP-YLFVA-TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred EecccccccCc--------hhhcCCceeEEEecCCCc-eEEEE-eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 99876654321 244567899999999874 44443 356799999765443333444556688999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCC-CCccEEEcccccccCCCCcccc
Q 002086 743 YIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEP-PPTPVQTKKHAKRISSNPTSAT 821 (969)
Q Consensus 743 ~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~-~~~~v~~~~~~~~~~~~~~~~~ 821 (969)
.|+.|+.|+.++.||++- +...+...+.|+... ..+.+.-.++.+..|.+ +.+.++.-
T Consensus 621 nli~gs~d~k~~WfDldl------sskPyk~lr~H~~av-r~Va~H~ryPLfas~sdDgtv~Vfhg-------------- 679 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDL------SSKPYKTLRLHEKAV-RSVAFHKRYPLFASGSDDGTVIVFHG-------------- 679 (733)
T ss_pred eEEEecCCCeeEEEEccc------CcchhHHhhhhhhhh-hhhhhccccceeeeecCCCcEEEEee--------------
Confidence 999999999999999986 333344444444321 23444445555555533 44444411
Q ss_pred cCCCCCCccccCCCC----ccccCCCCCCccccCCCCCCCC----ccccccCCCCCCccccC-CCccc
Q 002086 822 SSPTKEGSPAGHSRR----LLPPLPKKTNKVERVPSPPEEE----LSLISHDPGISESFTSN-SSSIR 880 (969)
Q Consensus 822 ~SP~~~~i~~~~~~~----~L~~~~~~s~~~~~~l~~pee~----l~~is~hP~~~~~~~~s-~~~~r 880 (969)
.+..|. .+.|. +.+.+|+.. ++..-|||..++.|+++ +.++|
T Consensus 680 ---------~VY~Dl~qnpliVPl--------K~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 680 ---------MVYNDLLQNPLIVPL--------KRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIR 730 (733)
T ss_pred ---------eeehhhhcCCceEee--------eeccCceeecccceEeecccCCCceEEecCCCceEE
Confidence 111111 22222 334556655 77778999999999998 55666
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-16 Score=174.63 Aligned_cols=247 Identities=15% Similarity=0.290 Sum_probs=191.9
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
|...+.++++|+||.+.|+|++|+.||+++|+|+.|+.|.||.-.-...+
T Consensus 39 D~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L------------------------------ 88 (1081)
T KOG1538|consen 39 DTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL------------------------------ 88 (1081)
T ss_pred eCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee------------------------------
Confidence 55666788999999999999999999999999999999999985421111
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHND 595 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~ 595 (969)
-..|++.|.|+.|+| .+.|++++-. ..-+|........ ......
T Consensus 89 ---------------------------------kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~kss~ 133 (1081)
T KOG1538|consen 89 ---------------------------------KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHKSSS 133 (1081)
T ss_pred ---------------------------------eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhhhhe
Confidence 135999999999999 8888888754 3567876644322 223455
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec---CCCCEEEEEEccCC-----CEEEEEeCCCcEEEEEcCC
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD---LHEMVTAACYTPDG-----QNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---~~~~V~sv~fspdg-----~~Lasgs~dg~I~IwDl~~ 667 (969)
.|.+++|.. +|.+|+.|-.+|+|.|-+-...+...... .+.+|.+++|+|.. ..+++.....++.+|.+..
T Consensus 134 R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG 212 (1081)
T KOG1538|consen 134 RIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG 212 (1081)
T ss_pred eEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc
Confidence 788899998 99999999999999998766555444444 56789999999963 5788888888999998876
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
...-.. +.-.-...|+.+.++| .++++|+.|+.+.+|.- +.+..-..-.....|..+...|++++++.|
T Consensus 213 ~~Igk~---------r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 213 KQIGKD---------RALNFDPCCISYFTNG-EYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVG 281 (1081)
T ss_pred eeeccc---------ccCCCCchhheeccCC-cEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEE
Confidence 443211 3334456789999988 89999999999999973 333333333356679999999999999999
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
+.||+|..|++..
T Consensus 282 CqDGTiACyNl~f 294 (1081)
T KOG1538|consen 282 CQDGTIACYNLIF 294 (1081)
T ss_pred EccCeeehhhhHH
Confidence 9999999999754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-17 Score=193.87 Aligned_cols=249 Identities=16% Similarity=0.240 Sum_probs=194.2
Q ss_pred cCEEEEEEeCCCC----EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 452 GSIWTIKFSLDAR----FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 452 ~~I~~l~fSpDg~----~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
..-+.|+|.+.|. +||.|..||.|.+||...- +. +
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~---~------------------------------------ 103 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IA---N------------------------------------ 103 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhh--cc---C------------------------------------
Confidence 3456888988665 4899999999999997641 00 0
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEE
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQF 602 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~f 602 (969)
.....+..+..|++.|..+.|++ ++.|++|+.||.|.|||+..-+.-... ...+.|.+++|
T Consensus 104 --------------~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 104 --------------ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred --------------cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 01122335677999999999998 679999999999999999875544443 35678999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceE-EEEecCC--CCEEEEEEccCCC-EEEEEeCCC---cEEEEEcCCCceeeeee
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLV-VDWTDLH--EMVTAACYTPDGQ-NALIGSHKG---SCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~~~~--~~V~sv~fspdg~-~Lasgs~dg---~I~IwDl~~~~~~~~~~ 675 (969)
+......|++++.+|.+.|||++..+. +.+..+. ..+..++|+|+.. .|++++.|. .|.+||++.-...
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP---- 245 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP---- 245 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc----
Confidence 986677899999999999999998754 4444333 3478999999864 566666554 7999998865431
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCC-EEEEEeCCCcEE
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGK-YIISASEDSQVY 754 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~-~LaSgs~Dg~I~ 754 (969)
.....+|...|.++.|++.++.++++++.|+.|.+|+..+.............+..+.|+|... .|++++-||.|-
T Consensus 246 ---~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 246 ---LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred ---hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 1222689999999999999989999999999999999887665555555667789999999654 888899999999
Q ss_pred EEEcCCCC
Q 002086 755 VWKREEHR 762 (969)
Q Consensus 755 IWdl~t~~ 762 (969)
||.+....
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99998753
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-16 Score=164.71 Aligned_cols=267 Identities=16% Similarity=0.290 Sum_probs=186.3
Q ss_pred CcccccccceeeeEecccccCEEEEEEeC--CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccC
Q 002086 433 KSYKDLSALHLCQEIQAHEGSIWTIKFSL--DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSL 510 (969)
Q Consensus 433 ~~l~dl~~~~l~~~L~gH~~~I~~l~fSp--Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~ 510 (969)
.++++..+++.+.++++|...+..++|.. ....+.+|+.||+||+||+........
T Consensus 52 v~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~---------------------- 109 (376)
T KOG1188|consen 52 VRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR---------------------- 109 (376)
T ss_pred EEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh----------------------
Confidence 34567777888999999999999999987 456899999999999999986433221
Q ss_pred CCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCC-CCEEEEEecC-CcEEEEEe----CCCcEEEEECCC
Q 002086 511 DGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHL-DDVLDLSWSR-SHLLLSSS----MDKTVRLWDMET 584 (969)
Q Consensus 511 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~-~~I~~l~fs~-~~~L~Sgs----~DgtV~IWDl~t 584 (969)
..+.+|. .+..+++-.- ++.+++|. .|-.|.+||++.
T Consensus 110 -------------------------------------~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~ 152 (376)
T KOG1188|consen 110 -------------------------------------ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRS 152 (376)
T ss_pred -------------------------------------eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecc
Confidence 1222333 3455666553 56666664 467899999998
Q ss_pred CcE-EEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEecCCCCEEEEEEccCC-CEEEEEeC
Q 002086 585 KSC-LKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTDLHEMVTAACYTPDG-QNALIGSH 656 (969)
Q Consensus 585 ~~~-i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~~~V~sv~fspdg-~~Lasgs~ 656 (969)
.+. +..+ .|.+.|++|.|+|.+.++|++|+.||.|.|||+... .++..+.+...|.++.|..++ +.|.+-+.
T Consensus 153 ~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH 232 (376)
T KOG1188|consen 153 EQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH 232 (376)
T ss_pred ccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc
Confidence 776 5555 799999999999999999999999999999999754 356677778889999999887 46888899
Q ss_pred CCcEEEEEcCCCceeeeeeeeecc----cccCCCCCeEEEEEcCCCCceEEEEeC-CCcEEEEeCC--------cceEEE
Q 002086 657 KGSCRLYSIEDSKLHQLNQVDFQT----KKKSSTRKITGFQFSPSNPSEVLVTSA-DSRIRILDGL--------DIVHKF 723 (969)
Q Consensus 657 dg~I~IwDl~~~~~~~~~~~~~~~----~~~~h~~~It~l~fspd~~~~l~sgs~-Dg~I~IwD~~--------~~~~~~ 723 (969)
.++..+|++..+........+... ........+... .+|.+...+++++. -+...++-.. +....+
T Consensus 233 ~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l 311 (376)
T KOG1188|consen 233 METFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAIL 311 (376)
T ss_pred cCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccc
Confidence 999999999988743222111000 001111111111 23444345555544 4555554321 112222
Q ss_pred EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 724 RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 724 ~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.+ .|..-|.++.|...+.++.||++||.+.+|..+.
T Consensus 312 ~g-~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 312 QG-GHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred cC-CcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 22 1445567888888899999999999999999754
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-15 Score=168.96 Aligned_cols=123 Identities=21% Similarity=0.309 Sum_probs=103.8
Q ss_pred EEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 639 VTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 639 V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
|+.+.|.| |...|++++.||.|++|.+..+...... .........|...|+.+.|+|--...|++++.|.+|++||+.
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~-~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE-MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCccc-CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 77788888 5678999999999999999876543221 123334478999999999999877899999999999999998
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+.........|...|..++|||||+.+|+.+.||+|++|+-.+.+
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 877777777788899999999999999999999999999987654
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-15 Score=153.94 Aligned_cols=207 Identities=20% Similarity=0.300 Sum_probs=156.6
Q ss_pred ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc----EEEEe-ecCCCeEEEEEec-CCCCEEEEEECCCeEEEEe
Q 002086 551 IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS----CLKLF-AHNDYVTCIQFNP-MDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 551 ~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~----~i~~~-~h~~~V~sv~fsp-~~~~~L~sgs~Dg~I~IWD 623 (969)
.+|.+-|.++.|.. |..+++|+.|++|+|||..... +.... .|.+.|..|.|.+ .-|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47899999999998 9999999999999999975432 33333 7999999999965 3478999999999999997
Q ss_pred CCCc----------eEEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc-------ccC
Q 002086 624 ISDR----------LVVDWTDLHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK-------KKS 684 (969)
Q Consensus 624 l~~~----------~~~~~~~~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~-------~~~ 684 (969)
-... +...+......|+.+.|.|. |-.+++++.||.+|||+..+.--.. +..+..+ ...
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs--~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS--QWTLQHEIQNVIDPPGK 167 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc--cchhhhhhhhccCCccc
Confidence 6211 23345566688999999995 6789999999999999876533221 1222222 235
Q ss_pred CCCCeEEEEEcCCC--CceEEEEeCC-----CcEEEEeCC----cceEEEEeecCCCCeEEEEEeCC----CCEEEEEeC
Q 002086 685 STRKITGFQFSPSN--PSEVLVTSAD-----SRIRILDGL----DIVHKFRGFRNTSSQISAAFNAD----GKYIISASE 749 (969)
Q Consensus 685 h~~~It~l~fspd~--~~~l~sgs~D-----g~I~IwD~~----~~~~~~~~~~~~~~V~sl~fspd----g~~LaSgs~ 749 (969)
+..+..|+.|+|.. ..+|++|+.+ +.++||... +....-+...+..+|+.++|.|+ -.+||+++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 67788999999742 3467777766 478888743 33444445578889999999995 257999999
Q ss_pred CCcEEEEEcCC
Q 002086 750 DSQVYVWKREE 760 (969)
Q Consensus 750 Dg~I~IWdl~t 760 (969)
|| |+||++..
T Consensus 248 Dg-v~I~~v~~ 257 (361)
T KOG2445|consen 248 DG-VRIFKVKV 257 (361)
T ss_pred Cc-EEEEEEee
Confidence 99 99999985
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.7e-16 Score=168.50 Aligned_cols=197 Identities=20% Similarity=0.293 Sum_probs=167.6
Q ss_pred cccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 434 SYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 434 ~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
++|||+...+.+.|++|+..|+++.++....|||+++..|-|.|..+.++.....+.
T Consensus 104 kiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~----------------------- 160 (673)
T KOG4378|consen 104 KIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT----------------------- 160 (673)
T ss_pred eehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee-----------------------
Confidence 467888878888999999999999999999999999999999999988765432111
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
.+....|.-+.|++ ..+|.+++.+|.|.+||+.....+..+
T Consensus 161 -------------------------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 161 -------------------------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred -------------------------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 11233456888998 567889999999999999988888766
Q ss_pred --ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 592 --AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 592 --~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
.|..+...|+|+|.+..+|++.+.|..|.+||+........+....+...++|.++|.+|++|...|.|..||++..+
T Consensus 204 ~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 204 SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 799999999999988889999999999999999998888888888899999999999999999999999999999876
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
... .....|...|++++|-|.
T Consensus 284 ~Pv-------~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 284 APV-------AVRSAHDASVTRVAFQPS 304 (673)
T ss_pred CCc-------eEeeecccceeEEEeeec
Confidence 422 122678888999999885
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-15 Score=174.63 Aligned_cols=232 Identities=17% Similarity=0.259 Sum_probs=185.2
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
|...|.+++.. +.+|++|+.+++|.+|.+..++.-.
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~------------------------------------------ 90 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDT------------------------------------------ 90 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccc------------------------------------------
Confidence 78888888875 5589999999999999987654321
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDD 607 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~ 607 (969)
.+.-.+-++.+++|+. +.+++.||.|-.|++-++......+.+ +|.++|.+|.|+| .+
T Consensus 91 -------------------iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~ 150 (933)
T KOG1274|consen 91 -------------------ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KG 150 (933)
T ss_pred -------------------eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CC
Confidence 2223456789999997 899999999999999999887776666 9999999999999 99
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEEecC---------CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 608 DYFISGSLDAKVRIWSISDRLVVDWTDL---------HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~~~~~~~---------~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
++|++.+.||.|+|||+.++.+...... ...+..++|+|+|..|++.+.|+.|++|+..+........
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr--- 227 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR--- 227 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec---
Confidence 9999999999999999998866543321 2456789999999999999999999999999887653322
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
...+...+.+++|+|.| .+|++++.||.|.|||..+ ...|.....|.+++|.|++.-|-.-...|...+|
T Consensus 228 ---~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t----~~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 228 ---DKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDT----HERHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ---ccccccceEEEEEcCCC-cEEeeeccCCcEEEEeccc----chhccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 23444559999999997 8999999999999999776 2225556678999999988766555445544444
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-15 Score=155.98 Aligned_cols=249 Identities=19% Similarity=0.303 Sum_probs=177.1
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
..++.|+|||..|++-+.|..+++|++-..-.-.... +...
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~---------------------~~~~------------------ 92 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKAD---------------------GPLN------------------ 92 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCC---------------------Cccc------------------
Confidence 3478999999999999999999999985211100000 0000
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEec-------C-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCC---eEE
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWS-------R-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDY---VTC 599 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs-------~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~---V~s 599 (969)
....+. .-......|+..+|- | ..++++.+.+.-|++||.-+|+....+ .|... ..+
T Consensus 93 --------~~~~~~-~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhs 163 (406)
T KOG2919|consen 93 --------FSKHLS-YRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHS 163 (406)
T ss_pred --------ccccee-EEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhee
Confidence 000000 011133456777774 2 478999999999999999999988776 45554 468
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeC-CCce---EEEE-----ecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCc
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSI-SDRL---VVDW-----TDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl-~~~~---~~~~-----~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~ 669 (969)
++|+| ++.+|++|. ...|++||+ +.|. +... ++..+.|.+++|+|.. ..+++|+...++-||.-....
T Consensus 164 L~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~ 241 (406)
T KOG2919|consen 164 LQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR 241 (406)
T ss_pred EEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC
Confidence 99999 999998874 678999999 4442 2222 2335778999999965 589999999999999888777
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCcceEE---EEeecC-CCCeEEEEEeCCCCEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLDIVHK---FRGFRN-TSSQISAAFNADGKYI 744 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~~~~~---~~~~~~-~~~V~sl~fspdg~~L 744 (969)
+.... .+|.+.|+.++|.++| ..|++|. .|-.|..||++..... +..+.. ...-+-....|++++|
T Consensus 242 pl~ll--------ggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~L 312 (406)
T KOG2919|consen 242 PLQLL--------GGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEIL 312 (406)
T ss_pred ceeee--------cccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCcee
Confidence 65443 6899999999999999 5666665 5778999998764332 222222 2222335567899999
Q ss_pred EEEeCCCcEEEEEcCCC
Q 002086 745 ISASEDSQVYVWKREEH 761 (969)
Q Consensus 745 aSgs~Dg~I~IWdl~t~ 761 (969)
++|+.||.|++||+++.
T Consensus 313 asG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 313 ASGDTDGSVRVWDLKDL 329 (406)
T ss_pred eccCCCccEEEEecCCC
Confidence 99999999999999973
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=161.57 Aligned_cols=257 Identities=21% Similarity=0.270 Sum_probs=186.8
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+.+.+|.+.|.+|.|+.++++||+||.|..++||.++..-.-
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-------------------------------------- 91 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR-------------------------------------- 91 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh--------------------------------------
Confidence 447799999999999999999999999999999998742110
Q ss_pred CCCCCCCcccccceeeecCCCceeEe-ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCC---CeEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSF-IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHND---YVTC 599 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l-~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~---~V~s 599 (969)
...+|+... ..|...|.|++|.- +..|++|..+++|.+-|+.+.+.+.++.|.. .|+.
T Consensus 92 -----------------k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~ 154 (609)
T KOG4227|consen 92 -----------------KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYH 154 (609)
T ss_pred -----------------cCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceee
Confidence 112333332 23668999999987 7899999999999999999999999998776 9999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCce----EEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRL----VVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
+..+| ..+.|++.+.++.|.+||.+..+ ++...........+.|+|.. .+|++.+..+-+.+||++........
T Consensus 155 m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~ 233 (609)
T KOG4227|consen 155 MDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ 233 (609)
T ss_pred cccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh
Confidence 99999 68999999999999999998754 44444555678899999965 57778999999999999865432111
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEEEEee------cCCCCeEEEEEeCCCCEEEEE
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHKFRGF------RNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~~~~~------~~~~~V~sl~fspdg~~LaSg 747 (969)
.............-.++.|+|.| ..+++--....-.+||... ...+++.- .+...+.+++|--|- .+++|
T Consensus 234 -~~~~~~L~~~~~~~M~~~~~~~G-~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tG 310 (609)
T KOG4227|consen 234 -RSMFKGLPQENTEWMGSLWSPSG-NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATG 310 (609)
T ss_pred -hhccccCcccchhhhheeeCCCC-CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeecc
Confidence 00000011112234678899998 4555444444445567443 23333322 223345677887554 49999
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
+.+-.|+||.+..
T Consensus 311 SD~~~i~~WklP~ 323 (609)
T KOG4227|consen 311 SDHWGIHIWKLPR 323 (609)
T ss_pred CcccceEEEecCC
Confidence 9999999999864
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-15 Score=155.85 Aligned_cols=282 Identities=16% Similarity=0.205 Sum_probs=203.5
Q ss_pred EEEEEecC-CcEEEEEeCCCcEEEEECCCC-------c-------EEEEeecCCCeEEEEEec------CCCCEEEEEEC
Q 002086 557 VLDLSWSR-SHLLLSSSMDKTVRLWDMETK-------S-------CLKLFAHNDYVTCIQFNP------MDDDYFISGSL 615 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~-------~-------~i~~~~h~~~V~sv~fsp------~~~~~L~sgs~ 615 (969)
...+.|+| +..|++-+.|..+.+|++... . ....+.....|...+|-+ .+.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 45689999 899999999999999998521 1 111224566788888752 16689999999
Q ss_pred CCeEEEEeCCCceEEEEe---cCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEc-CCCceeeeeeeeecccccCCCCC
Q 002086 616 DAKVRIWSISDRLVVDWT---DLH---EMVTAACYTPDGQNALIGSHKGSCRLYSI-EDSKLHQLNQVDFQTKKKSSTRK 688 (969)
Q Consensus 616 Dg~I~IWDl~~~~~~~~~---~~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl-~~~~~~~~~~~~~~~~~~~h~~~ 688 (969)
+.-|++||.-+|++...+ .|. ....+++|+|||.+|++|. ...|++||+ +.+........ +...+.+..+-
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t-~~~~k~gq~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT-VTKGKFGQKGI 209 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh-hhcccccccce
Confidence 999999999999876433 233 3457899999999998876 679999999 55554333222 11223556788
Q ss_pred eEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCCCCccCCC
Q 002086 689 ITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE-DSQVYVWKREEHRNASTG 767 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~-Dg~I~IWdl~t~~~~~t~ 767 (969)
|.+++|+|.....+++++....+-||.-......+..+.|.+.|+.+.|.+||+.|++|.. |-.|.+||++.-+
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----- 284 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----- 284 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-----
Confidence 9999999999889999999888777664444444455577888999999999999999886 7789999998721
Q ss_pred ceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCC-C
Q 002086 768 KRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKT-N 846 (969)
Q Consensus 768 k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s-~ 846 (969)
.+++.+.++.. +..+.+. --.-|.++|+++++.++.+..|..+. +
T Consensus 285 ~pv~~L~rhv~--------------------~TNQRI~--------------FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 285 DPVYALERHVG--------------------DTNQRIL--------------FDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred chhhhhhhhcc--------------------CccceEE--------------EecCCCCceeeccCCCccEEEEecCCCC
Confidence 12232322222 1122222 12357888999999999999998765 6
Q ss_pred ccccCCCCCCCCccccccCCCCCCccccCCCccc
Q 002086 847 KVERVPSPPEEELSLISHDPGISESFTSNSSSIR 880 (969)
Q Consensus 847 ~~~~~l~~pee~l~~is~hP~~~~~~~~s~~~~r 880 (969)
+....+......+.+++.||-++ |++.++...+
T Consensus 331 n~~sv~~~~sd~vNgvslnP~mp-ilatssGqr~ 363 (406)
T KOG2919|consen 331 NEVSVTGNYSDTVNGVSLNPIMP-ILATSSGQRI 363 (406)
T ss_pred CcccccccccccccceecCcccc-eeeeccCcee
Confidence 65566667778899999999966 7766443333
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=158.34 Aligned_cols=207 Identities=18% Similarity=0.303 Sum_probs=159.2
Q ss_pred CCCCEEEEEecC-----CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 553 HLDDVLDLSWSR-----SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 553 H~~~I~~l~fs~-----~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
|....+.++|+- +.+|+.|+.-|.|+|.|+.++++...+ +|...|+.|.|+|...+++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 566677777763 468999999999999999999998877 99999999999997788999999999999999999
Q ss_pred ceEEEEe----cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee--------------------eeeeecccc
Q 002086 627 RLVVDWT----DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL--------------------NQVDFQTKK 682 (969)
Q Consensus 627 ~~~~~~~----~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~--------------------~~~~~~~~~ 682 (969)
..++..+ +|.+.|.++.|+++|.+|++++.|..|++|++...+.... ..++.-...
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 9888755 4778999999999999999999999999999984332111 011111133
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE-------------EEeec-CCCCe--EEEEEeCCCCEEEE
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK-------------FRGFR-NTSSQ--ISAAFNADGKYIIS 746 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~-------------~~~~~-~~~~V--~sl~fspdg~~LaS 746 (969)
..|...|.|+.|-- .++++-+-++.|..|...+.... +..+. ....+ ...+|.|-++.||.
T Consensus 248 diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 248 DIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred ccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 55667777777764 58888899999999985321111 11111 11223 34566777899999
Q ss_pred EeCCCcEEEEEcCCCC
Q 002086 747 ASEDSQVYVWKREEHR 762 (969)
Q Consensus 747 gs~Dg~I~IWdl~t~~ 762 (969)
|...|.|++||++..+
T Consensus 325 gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNE 340 (385)
T ss_pred ccCCCcEEEEECCCCC
Confidence 9999999999999743
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-15 Score=158.43 Aligned_cols=271 Identities=22% Similarity=0.359 Sum_probs=187.4
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
...+.+..|..|..+|+++.|+|+|.+||||+.+|.|.+|....-... . . +.
T Consensus 53 ~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~---~-------------~------d~------ 104 (434)
T KOG1009|consen 53 MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF---D-------------A------DT------ 104 (434)
T ss_pred eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc---c-------------c------cc------
Confidence 345677889999999999999999999999999999999986530000 0 0 00
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
....+.........+.+|...|+.++|++ +.++++++.|.++++||+..|+.+..+ .|...
T Consensus 105 -----------------e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 105 -----------------EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred -----------------hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 00000011123346788999999999999 899999999999999999999999888 89999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec--------------------CC----CCEEEEEEccCCCEEE
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD--------------------LH----EMVTAACYTPDGQNAL 652 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~--------------------~~----~~V~sv~fspdg~~La 652 (969)
|..++|.| .++++++-+.|...+++++...+++.... |. .-...++|+|+|.+++
T Consensus 168 vqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv 246 (434)
T KOG1009|consen 168 VQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV 246 (434)
T ss_pred cceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence 99999999 88999999999888888775543322111 11 1245678999999998
Q ss_pred EEeC----CCc-----EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC-------C---------CceEEEEeC
Q 002086 653 IGSH----KGS-----CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS-------N---------PSEVLVTSA 707 (969)
Q Consensus 653 sgs~----dg~-----I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd-------~---------~~~l~sgs~ 707 (969)
+... .+. .++|+-...+.. . ........+...+.|+|- . -..+++...
T Consensus 247 tPag~~~~g~~~~~n~tYvfsrk~l~rP-~------~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt 319 (434)
T KOG1009|consen 247 TPAGLFKVGGGVFRNTSYVFSRKDLKRP-A------ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT 319 (434)
T ss_pred cccceeeeCCceeeceeEeeccccccCc-e------eecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee
Confidence 7532 222 344433322110 0 111233344444444431 0 023444455
Q ss_pred CCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 708 DSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 708 Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
...|+|||.......+. ...|-..++.++|++||.+|+..+.||..-+--++..+
T Consensus 320 ~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 320 KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 67899999876443332 23466789999999999999999999998888777643
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.7e-13 Score=148.41 Aligned_cols=289 Identities=26% Similarity=0.431 Sum_probs=207.2
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce-EEEeecCCcc-Ccccccc-cCCCCCccCCCCCCCCCcccc
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE-VMSMSEGNLT-PIHPSLC-NSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~-~l~~~~~~~~-~v~~~~~-~~~~~~~~~~g~~~~~~~~~~ 522 (969)
.+..|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+..... .+..... .......
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 125 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI-------------- 125 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceE--------------
Confidence 467899999999999999999999999999999998876 4444333211 1111111 0000000
Q ss_pred cCCCCCCCCcccccceeeecC--CCceeEeccCCCCEEEEEecC-CcEEEEEeC-CCcEEEEECCCCcEEEEe-ecCCCe
Q 002086 523 KKGKHSSPDYVHVPETVFSLS--EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-DKTVRLWDMETKSCLKLF-AHNDYV 597 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~--~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-DgtV~IWDl~t~~~i~~~-~h~~~V 597 (969)
............+|... ......+..|...|.++.|++ +..+++++. |+.+++|++..+..+..+ .|...|
T Consensus 126 ----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 126 ----LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred ----EeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 00000011123445544 366778899999999999999 668888885 999999999998877777 689999
Q ss_pred EEEEEecCCCC-EEEEEECCCeEEEEeCCCceEEE--EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 598 TCIQFNPMDDD-YFISGSLDAKVRIWSISDRLVVD--WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 598 ~sv~fsp~~~~-~L~sgs~Dg~I~IWDl~~~~~~~--~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
.+++|+| ++. .+++++.|+.|++||...+.... +..+.... ...|++++.++++++.++.+++|++...... ..
T Consensus 202 ~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~ 278 (466)
T COG2319 202 SSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL-LR 278 (466)
T ss_pred EEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE-EE
Confidence 9999998 776 55566999999999998777665 45555554 3389999989999999999999999876651 11
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee--cCCCCeEEEEEeCCCCEEEEE-eCCC
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF--RNTSSQISAAFNADGKYIISA-SEDS 751 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~--~~~~~V~sl~fspdg~~LaSg-s~Dg 751 (969)
. . ..|...+.++.|.|++ ..+++++.|+.+.+|+........... .+...+..+.|.+++..++.+ ..|+
T Consensus 279 ~--~----~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 279 T--L----SGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred E--E----ecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCC
Confidence 0 1 4568899999999966 566668888889999866544333322 445568888884343566665 6889
Q ss_pred cEEEEEcCCCC
Q 002086 752 QVYVWKREEHR 762 (969)
Q Consensus 752 ~I~IWdl~t~~ 762 (969)
.+.+|++....
T Consensus 352 ~~~~~~~~~~~ 362 (466)
T COG2319 352 TIRLWDLRTGK 362 (466)
T ss_pred cEEeeecCCCc
Confidence 99999998753
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-15 Score=158.81 Aligned_cols=203 Identities=17% Similarity=0.306 Sum_probs=161.2
Q ss_pred EeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcE--------EEEeecCCCeEEEEEecCCCCEEEEEECCCe
Q 002086 549 SFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSC--------LKLFAHNDYVTCIQFNPMDDDYFISGSLDAK 618 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~--------i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~ 618 (969)
.+.||+++|.+++|+| ++.|++||.|.+|.||.+..+.. ....+|...|--|+|+|...+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 5679999999999999 78999999999999999875432 2334899999999999988899999999999
Q ss_pred EEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC-CCeEEEEEcCC
Q 002086 619 VRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST-RKITGFQFSPS 697 (969)
Q Consensus 619 I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~-~~It~l~fspd 697 (969)
|.+|++.+++.+..+.|.+.|++++|+.+|.+|++.+.|..|+|||.+.++.+... ..|. ..-..+.|-.+
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~--------~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG--------VAHEGAKPARAIFLAS 227 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec--------ccccCCCcceeEEecc
Confidence 99999999987777779999999999999999999999999999999999876543 2332 23445567666
Q ss_pred CCceEEEE---eCCCcEEEEeCCcceE--EEEeecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 698 NPSEVLVT---SADSRIRILDGLDIVH--KFRGFRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 698 ~~~~l~sg---s~Dg~I~IwD~~~~~~--~~~~~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
+ ..+.+| ..+.++-+||..+... .+........|.---|.+|...|..++ .|+.|+.|.+.+
T Consensus 228 g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 228 G-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred C-ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 6 333333 3567899999554332 233334455566667788888776554 599999999976
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-14 Score=168.95 Aligned_cols=249 Identities=17% Similarity=0.213 Sum_probs=183.9
Q ss_pred cccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
-...|+|++|+| +..+||.|..+|.|.+||+..+.....
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~---------------------------------------- 280 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP---------------------------------------- 280 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC----------------------------------------
Confidence 467899999999 567889999999999999986543110
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEE------EEe-------e
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCL------KLF-------A 592 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i------~~~-------~ 592 (969)
...-.....|..+++.+.|.. +.-|++++.||.|..|+++.-.+. ... .
T Consensus 281 ---------------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~ 345 (555)
T KOG1587|consen 281 ---------------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSS 345 (555)
T ss_pred ---------------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccc
Confidence 000012346999999999976 456999999999999988753321 111 2
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeC---CCce------EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI---SDRL------VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLY 663 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl---~~~~------~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~Iw 663 (969)
-...++++.|.+.+.+.|+.|+.+|.|..=+. +... ......|.+.|+++.++|-+..++..+.|.+++||
T Consensus 346 ~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriW 425 (555)
T KOG1587|consen 346 KAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIW 425 (555)
T ss_pred cccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEec
Confidence 23578999999988899999999999987333 2222 22455677899999999988766665569999999
Q ss_pred EcC-CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc--eEEEEeecCCCCeEEEEEeCC
Q 002086 664 SIE-DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI--VHKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 664 Dl~-~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~--~~~~~~~~~~~~V~sl~fspd 740 (969)
... ....... ...+...|++++|+|..+..++++..||.|.|||+... .............+.+.|+++
T Consensus 426 s~~~~~~Pl~~--------~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~ 497 (555)
T KOG1587|consen 426 SEDVIASPLLS--------LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPN 497 (555)
T ss_pred cccCCCCcchh--------hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCC
Confidence 987 3332211 14455669999999999999999999999999996532 122222222445567788888
Q ss_pred CCEEEEEeCCCcEEEEEcCCC
Q 002086 741 GKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|+.|++|...|.|++|++...
T Consensus 498 g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 498 GKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CcEEEEecCCCcEEEEEcCch
Confidence 999999999999999999763
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-12 Score=148.04 Aligned_cols=254 Identities=28% Similarity=0.489 Sum_probs=193.5
Q ss_pred ccccc-ceeeeEecccccCEEEEEEeCCCCEEEEEeC-CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 436 KDLSA-LHLCQEIQAHEGSIWTIKFSLDARFLASAGE-DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 436 ~dl~~-~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~-DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
+++.. ......+.+|...|.+++|+|++.++++++. |+.+++|++..+..+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 191 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL--------------------------- 191 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceE---------------------------
Confidence 34444 6778889999999999999999999999986 999999998753332
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEE-E
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLK-L 590 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~-~ 590 (969)
..+.+|...|.+++|++ +. .+++++.|+.|++||...+..+. .
T Consensus 192 ----------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~ 237 (466)
T COG2319 192 ----------------------------------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237 (466)
T ss_pred ----------------------------------EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeee
Confidence 24556999999999998 54 55555999999999999888887 3
Q ss_pred e-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE--EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 002086 591 F-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV--VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 591 ~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~ 667 (969)
+ .|...+ ...|++ ++.++++++.|+.+++|++..... .....|...+.++.|.|++..+++++.|+.+.+|++..
T Consensus 238 ~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 315 (466)
T COG2319 238 LSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315 (466)
T ss_pred cCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence 4 677775 448998 678899999999999999986553 33346678899999999888888898899999999887
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE-eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT-SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg-s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaS 746 (969)
........ ...|...+..+.| +.+...++.+ ..|+.+.+|+..... ..........+..+.+.+ ...++.
T Consensus 316 ~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~ 386 (466)
T COG2319 316 GKLLSSLT------LKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGHSNVLSVSFSP-DGRVVS 386 (466)
T ss_pred CceEEEee------ecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCCceEEEEEECC-CCCEEE
Confidence 76544332 2355667999999 4222345555 688999999976655 222222222278888988 544444
Q ss_pred -EeCCCcEEEEEcCCC
Q 002086 747 -ASEDSQVYVWKREEH 761 (969)
Q Consensus 747 -gs~Dg~I~IWdl~t~ 761 (969)
+..++.+.+|+....
T Consensus 387 ~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 387 SGSTDGTVRLWDLSTG 402 (466)
T ss_pred EecCCCceEEEecccC
Confidence 688999999999874
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=165.83 Aligned_cols=265 Identities=19% Similarity=0.301 Sum_probs=203.0
Q ss_pred cccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 438 LSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 438 l~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
++.+.+...|..|.|.|..|.|+..|..|+|||.|..|.+||+..+.....
T Consensus 129 vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~----------------------------- 179 (559)
T KOG1334|consen 129 VQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS----------------------------- 179 (559)
T ss_pred HHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc-----------------------------
Confidence 445566677999999999999999999999999999999999987654332
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCC-CcEEE---E
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMET-KSCLK---L 590 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t-~~~i~---~ 590 (969)
-..||...|....|.| ...+++++.||.|++=.+.. +.+.. .
T Consensus 180 -------------------------------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl 228 (559)
T KOG1334|consen 180 -------------------------------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL 228 (559)
T ss_pred -------------------------------cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence 1246777787777877 57899999999999987654 44432 3
Q ss_pred eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE----EEecCCC---CEEEEEEccCCC-EEEEEeCCCcEEE
Q 002086 591 FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV----DWTDLHE---MVTAACYTPDGQ-NALIGSHKGSCRL 662 (969)
Q Consensus 591 ~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~----~~~~~~~---~V~sv~fspdg~-~Lasgs~dg~I~I 662 (969)
..|.++|..++.-|.....|++++.|+.+.-+|++.+... ....... ....++..|... .+++|+.|..+++
T Consensus 229 ~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~Rv 308 (559)
T KOG1334|consen 229 APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARV 308 (559)
T ss_pred ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhh
Confidence 3799999999999978889999999999999999876432 2222222 467889999765 7899999999999
Q ss_pred EEcCCCceeeee----eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC--------------cc-eEEE
Q 002086 663 YSIEDSKLHQLN----QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL--------------DI-VHKF 723 (969)
Q Consensus 663 wDl~~~~~~~~~----~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~--------------~~-~~~~ 723 (969)
||.+.-...... .+............|++++|+.++ ..++++..|-.|+++... .. .+.|
T Consensus 309 YD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~-sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY 387 (559)
T KOG1334|consen 309 YDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG-SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY 387 (559)
T ss_pred hcccchhhccccchhhhcCCccccccCcccceeEEecCCc-cceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence 998864432111 111111122445679999999877 678888899999999611 11 2348
Q ss_pred EeecCCCCeEEEEE-eCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 724 RGFRNTSSQISAAF-NADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 724 ~~~~~~~~V~sl~f-spdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
++|.+...|..+-| -|...|+++|+.-|.|+||+-.+.+.
T Consensus 388 KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 388 KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred cccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 88988888888866 57889999999999999999988544
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-15 Score=164.91 Aligned_cols=284 Identities=14% Similarity=0.144 Sum_probs=211.6
Q ss_pred EEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC
Q 002086 557 VLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL 635 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~ 635 (969)
-+.+.|+. |.+|+.|+..|.|-.+|+.++++...+.-...|.++.|.. +.++|+++ ....++|||-..-++..+ ..
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~~GtElHCl-k~ 208 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAVA-QKKYVYVYDNNGTELHCL-KR 208 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHhh-hhceEEEecCCCcEEeeh-hh
Confidence 35688887 8999999999999999999999999999999999999997 56666555 668899999766555444 44
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 636 HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 636 ~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
...|..+.|.|..-+|++++..|.++.-|+..++++... ....+.+..+.-+|-+ ..+-+|...|+|.+|.
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~--------~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI--------RTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWS 279 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHHH--------HccCCccchhhcCCcc-ceEEEcCCCceEEecC
Confidence 566999999999999999999999999999999875443 4456778888899988 7899999999999999
Q ss_pred CCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcc
Q 002086 716 GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMV 795 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i 795 (969)
........+...|.++|.++++.++|+|+||.+.|..|+|||++.-..+.+-. . .+. .-.++++..++.
T Consensus 280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~------t---p~~--a~~ls~SqkglL 348 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR------T---PHP--ASNLSLSQKGLL 348 (545)
T ss_pred CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee------c---CCC--ccccccccccce
Confidence 77666666677789999999999999999999999999999999843222211 1 111 111222233333
Q ss_pred c-CCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCCccccccCCCCCCcccc
Q 002086 796 K-GEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTS 874 (969)
Q Consensus 796 ~-G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~ 874 (969)
+ |...-+.+|..... .|| .....|.-..-.+.++....+|.|++++|+|--||.++++|
T Consensus 349 A~~~G~~v~iw~d~~~-----------~s~---------~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVP 408 (545)
T KOG1272|consen 349 ALSYGDHVQIWKDALK-----------GSG---------HGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVP 408 (545)
T ss_pred eeecCCeeeeehhhhc-----------CCC---------CCCcchhhhccCcccccceeccHHHeeeccccCCceeEecc
Confidence 2 22233333311100 011 11222222333345666678999999999999999999999
Q ss_pred CCCccccCC
Q 002086 875 NSSSIRSGD 883 (969)
Q Consensus 875 s~~~~r~~~ 883 (969)
++.++++-.
T Consensus 409 GsGePN~Ds 417 (545)
T KOG1272|consen 409 GSGEPNYDS 417 (545)
T ss_pred CCCCCCcch
Confidence 999998665
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-15 Score=150.16 Aligned_cols=249 Identities=16% Similarity=0.223 Sum_probs=171.2
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
...|++|.+.|+++.|-.+++ |.+|..-|.|++|++++...+..+.+
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~-------------------------------- 53 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL-------------------------------- 53 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--------------------------------
Confidence 445779999999999998775 99999999999999987544332221
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc-----------------
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS----------------- 586 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~----------------- 586 (969)
.|...|+.+...|+..|.+-+.|..+.+|++..+.
T Consensus 54 ----------------------------~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrf 105 (323)
T KOG0322|consen 54 ----------------------------FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRF 105 (323)
T ss_pred ----------------------------hccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccc
Confidence 13333444444444444444444444444443211
Q ss_pred ------------------------------E--EEEe-----ecCCCeEEEEEecCCCC--EEEEEECCCeEEEEeCCCc
Q 002086 587 ------------------------------C--LKLF-----AHNDYVTCIQFNPMDDD--YFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 587 ------------------------------~--i~~~-----~h~~~V~sv~fsp~~~~--~L~sgs~Dg~I~IWDl~~~ 627 (969)
. +... +..+.+.|..+...++. ++++|.++|.|.+||+.++
T Consensus 106 Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~ 185 (323)
T KOG0322|consen 106 SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTG 185 (323)
T ss_pred eeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCC
Confidence 1 1111 23455666665443333 5678889999999999986
Q ss_pred eE-----------EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 628 LV-----------VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 628 ~~-----------~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.. .....|..+|.++.|.+.-..=++|+.+..+..|++........ +........-.|..+.+-|
T Consensus 186 ~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq----~~~e~~lknpGv~gvrIRp 261 (323)
T KOG0322|consen 186 DKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ----IRKEITLKNPGVSGVRIRP 261 (323)
T ss_pred ceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc----ccceEEecCCCccceEEcc
Confidence 32 23345778899999998777778889999999998875422111 1111223345688889999
Q ss_pred CCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
|+ +.+++++.|+.||||.-++.........|...|++++|+||..++|.++.|++|-+|++
T Consensus 262 D~-KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 262 DG-KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CC-cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 98 89999999999999985554433333445688999999999999999999999999997
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.9e-14 Score=145.48 Aligned_cols=245 Identities=15% Similarity=0.230 Sum_probs=178.5
Q ss_pred ccccCEEEEEEeCCCC-----EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 449 AHEGSIWTIKFSLDAR-----FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~-----~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
.|.-+++.+-|.|+.. +|||++ ..+|||.+...+.....+. +..
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~---------~L~-------------------- 142 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQS---------VLN-------------------- 142 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhh---------hhc--------------------
Confidence 5999999999999763 778765 4699999874211100000 000
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcE----EEEeecCCCe
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSC----LKLFAHNDYV 597 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~----i~~~~h~~~V 597 (969)
...-..+.++++++.|+. .++|.++|-|-+..|||++++.. .+.++|..+|
T Consensus 143 -----------------------~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV 199 (364)
T KOG0290|consen 143 -----------------------NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV 199 (364)
T ss_pred -----------------------cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence 001123667999999997 68999999999999999999743 3455999999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceE---EEEecC-CCCEEEEEEccCC-CEEEE-EeCCCcEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLV---VDWTDL-HEMVTAACYTPDG-QNALI-GSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~---~~~~~~-~~~V~sv~fspdg-~~Las-gs~dg~I~IwDl~~~~~~ 671 (969)
..|+|....-+.|++++.||.|++||++..+- +..-.. ..+...++|+++. +++|+ +-....|.|.|++....
T Consensus 200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t- 278 (364)
T KOG0290|consen 200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT- 278 (364)
T ss_pred eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc-
Confidence 99999975567999999999999999987542 222222 4678899999854 56665 44556899999986543
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE-----EEEeecCCCCeEEEEEeC-CCCEEE
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH-----KFRGFRNTSSQISAAFNA-DGKYII 745 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~-----~~~~~~~~~~V~sl~fsp-dg~~La 745 (969)
......+|...|.+++|.|.....|++++.|..+.|||+.+... ....+...+.|..+.|++ .+..|+
T Consensus 279 ------pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 279 ------PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIA 352 (364)
T ss_pred ------ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEE
Confidence 22344889999999999999989999999999999999654332 122233566799999996 566777
Q ss_pred EEeCCCcEEE
Q 002086 746 SASEDSQVYV 755 (969)
Q Consensus 746 Sgs~Dg~I~I 755 (969)
.+.. ..+.|
T Consensus 353 i~~~-kklei 361 (364)
T KOG0290|consen 353 ICFG-KKLEI 361 (364)
T ss_pred EEec-CeeeE
Confidence 7763 34443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-14 Score=147.04 Aligned_cols=223 Identities=20% Similarity=0.270 Sum_probs=168.1
Q ss_pred cccceeeeEec-ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEE-EeecCCccCcccccccCCCCCccCCCCCC
Q 002086 438 LSALHLCQEIQ-AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVM-SMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 438 l~~~~l~~~L~-gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l-~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
..+++++..|. .|-+.|.|+.|.|++..||+-. |..|.+|+++.+..+ ..+..
T Consensus 109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s------------------------ 163 (370)
T KOG1007|consen 109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS------------------------ 163 (370)
T ss_pred cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc------------------------
Confidence 34456666676 6778999999999999999886 888999999875442 11000
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe--
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-- 591 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-- 591 (969)
..-.+|....++-+|+| +..-+....|+++..||+++..+...+
T Consensus 164 --------------------------------s~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 164 --------------------------------SESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred --------------------------------cccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence 00112566777888998 444445566899999999998888776
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCC
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~ 668 (969)
+|...|..+.|+|....+|++|+.||.|+|||.+..+ +..+.+|...|.++.|+|. .++|++|+.|..|.+|....-
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 7999999999999666789999999999999998753 5567788899999999995 467789999999999976532
Q ss_pred ceeeeeee---------------------eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 669 KLHQLNQV---------------------DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 669 ~~~~~~~~---------------------~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
...+.... ........|...|++++|+.-++-.+++-+.||.+.|=.+.
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 21110000 01123467889999999999998888899999999886543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-12 Score=145.26 Aligned_cols=270 Identities=17% Similarity=0.242 Sum_probs=189.4
Q ss_pred EEeeC---CCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCccccccccccc
Q 002086 293 LIKNL---DTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKS 369 (969)
Q Consensus 293 ~i~~l---d~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~ 369 (969)
+|.|+ -+|.+++++. |..+-++|...|.+ ++++.||.+.|++++...++.++++|+.|..+..|..+.
T Consensus 14 ci~d~afkPDGsqL~lAA----g~rlliyD~ndG~l-----lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----GSRLLVYDTSDGTL-----LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred chheeEECCCCceEEEec----CCEEEEEeCCCccc-----ccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 55554 3777877775 44577999999998 578899999999999999999999999999898887431
Q ss_pred ccccccccccccce-eeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEec
Q 002086 370 LRMSKRRGAALLKN-IKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQ 448 (969)
Q Consensus 370 ~~~~k~~~~~~l~~-v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~ 448 (969)
.. .++. +..+..++.|.|-...+.+..+ .+-..|- ... +.++ -+
T Consensus 85 ---EG-----~LkYSH~D~IQCMsFNP~~h~LasCsL--------------sdFglWS----~~q--K~V~-------K~ 129 (1081)
T KOG1538|consen 85 ---EG-----ILKYSHNDAIQCMSFNPITHQLASCSL--------------SDFGLWS----PEQ--KSVS-------KH 129 (1081)
T ss_pred ---cc-----eeeeccCCeeeEeecCchHHHhhhcch--------------hhccccC----hhh--hhHH-------hh
Confidence 11 2222 2234444544444333333321 1111120 000 0110 01
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.-...|.+++|..||++|+-|-.||+|.|-+-...+.+..
T Consensus 130 kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I---------------------------------------- 169 (1081)
T KOG1538|consen 130 KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKI---------------------------------------- 169 (1081)
T ss_pred hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEE----------------------------------------
Confidence 1245688999999999999999999999886432221110
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC------CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEE
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR------SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQF 602 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~------~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~f 602 (969)
..-.|.+.+|++++|+| ...+++.....++.++.+.....-+.-.-.-...|+.+
T Consensus 170 -------------------~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisY 230 (1081)
T KOG1538|consen 170 -------------------ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISY 230 (1081)
T ss_pred -------------------eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhee
Confidence 12235678999999997 25788888888888888865433333344556678999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIE 666 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~ 666 (969)
.+ +|.+++.|+.|+.+.+|.-..-.+-..-....+|+.++..|++++++.|+.||+|..|++-
T Consensus 231 f~-NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 231 FT-NGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cc-CCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99 9999999999999999986654444455566889999999999999999999999998864
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-12 Score=148.26 Aligned_cols=256 Identities=15% Similarity=0.230 Sum_probs=164.6
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEe-CCCcEEEEeccc-ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAG-EDRVIHVWEVQE-CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs-~DgtVrIWDl~t-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
.+++.+. +.+....|+++|++++|+.++ .++.|.+|++.. +++... .
T Consensus 26 ~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~-~----------------------------- 74 (330)
T PRK11028 26 TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA-A----------------------------- 74 (330)
T ss_pred eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe-e-----------------------------
Confidence 3445554 346677899999999886654 588899999862 322110 0
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECCCC----cEEEEeec
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-MDKTVRLWDMETK----SCLKLFAH 593 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~t~----~~i~~~~h 593 (969)
.. ...+....+.|+| +++|++++ .++.|.+|++.+. +.+..+.+
T Consensus 75 -----------------------------~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~ 124 (330)
T PRK11028 75 -----------------------------ES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG 124 (330)
T ss_pred -----------------------------ee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC
Confidence 00 0112345789998 67777766 4899999999742 23333344
Q ss_pred CCCeEEEEEecCCCCEEEE-EECCCeEEEEeCCCceEEE-------EecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEE
Q 002086 594 NDYVTCIQFNPMDDDYFIS-GSLDAKVRIWSISDRLVVD-------WTDLHEMVTAACYTPDGQNALIGSH-KGSCRLYS 664 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~s-gs~Dg~I~IWDl~~~~~~~-------~~~~~~~V~sv~fspdg~~Lasgs~-dg~I~IwD 664 (969)
.....+++++| +++++++ ...++.|.+||+.+...+. ..........++|+|+|++++++.. ++.|.+|+
T Consensus 125 ~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~ 203 (330)
T PRK11028 125 LEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQ 203 (330)
T ss_pred CCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence 45678889999 7877755 4556999999997632221 1122345678999999999988876 89999999
Q ss_pred cCC--CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCcc--eEEEEeec-CCCCeEEEEEe
Q 002086 665 IED--SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLDI--VHKFRGFR-NTSSQISAAFN 738 (969)
Q Consensus 665 l~~--~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~~--~~~~~~~~-~~~~V~sl~fs 738 (969)
+.. ++......+........+......+.|+|++ .+++++. .++.|.+|+.... ...+..+. .......+.|+
T Consensus 204 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~ 282 (330)
T PRK11028 204 LKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG-RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNID 282 (330)
T ss_pred EeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEEC
Confidence 974 3332222111110001122234468899998 5666664 5789999986321 22222221 11234578999
Q ss_pred CCCCEEEEEeC-CCcEEEEEcCC
Q 002086 739 ADGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 739 pdg~~LaSgs~-Dg~I~IWdl~t 760 (969)
|||++|++++. +++|.+|+++.
T Consensus 283 ~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 283 HSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCCEEEEEEccCCcEEEEEEcC
Confidence 99999998876 89999999864
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-15 Score=175.50 Aligned_cols=211 Identities=18% Similarity=0.280 Sum_probs=169.8
Q ss_pred cceeeeEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
...++.++..|+|.|.+|.|++... +||+|+.||.|.|||+..-+.-... +
T Consensus 105 ~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~----------------------~------ 156 (1049)
T KOG0307|consen 105 SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP----------------------G------ 156 (1049)
T ss_pred chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC----------------------C------
Confidence 3456777889999999999999655 9999999999999999752210000 0
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEee-c--
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFA-H-- 593 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h-- 593 (969)
-..-.+.|.+++|+. .+.|++++.+|.+.|||++..+.+..+. +
T Consensus 157 -------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~ 205 (1049)
T KOG0307|consen 157 -------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG 205 (1049)
T ss_pred -------------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC
Confidence 012457899999997 6899999999999999999987776663 2
Q ss_pred CCCeEEEEEecCCCCEEEEEECCC---eEEEEeCCCc--eEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCC
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDA---KVRIWSISDR--LVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg---~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~ 667 (969)
...+..|+|+|.....|++++.|. .|.+||++.- .+..+..|...|.++.|++.+ .++++++.|+.|.+|+..+
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 235889999996667888888764 4999999753 233445788999999999977 7888999999999999999
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
++.+... ......+..+.|+|.++..+++++.||.|-||.+.
T Consensus 286 gEvl~~~--------p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 286 GEVLGEL--------PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred ceEeeec--------CCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 8875443 44678899999999999999999999999999854
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=161.51 Aligned_cols=242 Identities=19% Similarity=0.357 Sum_probs=166.1
Q ss_pred cceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
.+.+-++|.||+|.|+||+|+.||.+|++|+.|-.+.|||.-..+++..
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs------------------------------- 87 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS------------------------------- 87 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee-------------------------------
Confidence 3556678999999999999999999999999999999999875554432
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc----------
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS---------- 586 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~---------- 586 (969)
.-.||...|.++.|.| +.++++|..|..|+++|+...+
T Consensus 88 -----------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~ 138 (758)
T KOG1310|consen 88 -----------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEE 138 (758)
T ss_pred -----------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccc
Confidence 2358999999999998 6789999999999999998521
Q ss_pred EEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-----------EEecCCCCEEEEEEccCC-CEEEE
Q 002086 587 CLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-----------DWTDLHEMVTAACYTPDG-QNALI 653 (969)
Q Consensus 587 ~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-----------~~~~~~~~V~sv~fspdg-~~Las 653 (969)
....+ .|...|..|+..|...+.|.+++.||+|+-+|++..... .....--...|+.++|.. .+|++
T Consensus 139 ~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laV 218 (758)
T KOG1310|consen 139 TTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAV 218 (758)
T ss_pred hhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEe
Confidence 22222 689999999999955589999999999999999863211 111112346789999965 57889
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE-EcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCe
Q 002086 654 GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ-FSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQ 732 (969)
Q Consensus 654 gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~-fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V 732 (969)
|+.|-..++||.+......... .. ..........|+. |+|.. + ...+|.+.. ....+
T Consensus 219 GgsdpfarLYD~Rr~lks~~s~--~~-~~~~pp~~~~cv~yf~p~h---l--kn~~gn~~~--------------~~~~~ 276 (758)
T KOG1310|consen 219 GGSDPFARLYDRRRVLKSFRSD--GT-MNTCPPKDCRCVRYFSPGH---L--KNSQGNLDR--------------YITCC 276 (758)
T ss_pred cCCCchhhhhhhhhhccCCCCC--cc-ccCCCCcccchhheecCcc---c--cCccccccc--------------ceeee
Confidence 9999999999965322110000 00 0001111222222 33322 1 111221110 11225
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
+-+.|+|+|.-|+..-....|+++|+...+.
T Consensus 277 t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred EEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 6788999997666655556899999988644
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-13 Score=160.46 Aligned_cols=276 Identities=18% Similarity=0.264 Sum_probs=188.9
Q ss_pred cCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeC--CCCEEEEEeCCCcEEEEecccc-----eEEEeecCCc
Q 002086 421 VSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSL--DARFLASAGEDRVIHVWEVQEC-----EVMSMSEGNL 493 (969)
Q Consensus 421 ~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSp--Dg~~LaTgs~DgtVrIWDl~tg-----~~l~~~~~~~ 493 (969)
-..+.|+.+..++.+.-+.... .-...|+.|++-. |..+|++|+.||.||||+--.. +++....
T Consensus 1085 r~~i~vwd~e~~~~l~~F~n~~------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~--- 1155 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGA------FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS--- 1155 (1387)
T ss_pred cceEEEEecccCceeccccCCC------CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeec---
Confidence 3445556666555544333222 2345799999986 5569999999999999974311 1111000
Q ss_pred cCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe
Q 002086 494 TPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS 572 (969)
Q Consensus 494 ~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs 572 (969)
+ +.+ .+.+-.+.=.-+.|.. ..+|++++
T Consensus 1156 ------------------~-----------------------------Ls~----~~~~~r~~~~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1156 ------------------S-----------------------------LSD----QLPGARGTGLVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred ------------------c-----------------------------ccc----cCccCCCCCeeeehhhhCCeEEecC
Confidence 0 000 0011111114466776 56777777
Q ss_pred CCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce----EEEEecCCCC--EEEEEE
Q 002086 573 MDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL----VVDWTDLHEM--VTAACY 644 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~~~~~~~--V~sv~f 644 (969)
.-..|+|||.....+..-+ +....|+++.-+-..++.|++|..||.|++||.+... +..+..|... |..+.+
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence 7899999999998888766 5667788888776578999999999999999997643 3455666665 999999
Q ss_pred ccCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEE
Q 002086 645 TPDGQN-ALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHK 722 (969)
Q Consensus 645 spdg~~-Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~ 722 (969)
.+.|-. |++|+.+|.|++||++.........+... ....+..+++..+++. ..+++|+. +.|.||++.. ....
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~---~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH---WEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLNI 1339 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCcccccceeeec---cccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhhcc
Confidence 997765 99999999999999998533222222110 1113359999999987 67888877 9999999542 1111
Q ss_pred EE---ee--cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 723 FR---GF--RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 723 ~~---~~--~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++ ++ ...+.+.+++|+|-.-+||+|+.|.+|.||....+
T Consensus 1340 ~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 11 11 23356789999999999999999999999998764
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=142.92 Aligned_cols=255 Identities=18% Similarity=0.250 Sum_probs=182.0
Q ss_pred eEecccccCEEEEEEeC-CCCEEEEEeCC-------CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 445 QEIQAHEGSIWTIKFSL-DARFLASAGED-------RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSp-Dg~~LaTgs~D-------gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
..|..|.+.|+.|+-+| |.+.|+|+-.| -.+-||.+....... ..
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S---------------------------~~ 109 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS---------------------------NS 109 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc---------------------------cc
Confidence 45778999999999999 56678887543 235678765311000 00
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEec-cCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEE-EEe--
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFI-GHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCL-KLF-- 591 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~-gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i-~~~-- 591 (969)
..-..+..+. .+-+.|.|+.|.| +..+++- .|..|.+|++..+..+ ..+
T Consensus 110 -------------------------~tlE~v~~Ldteavg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~~vaev~s 163 (370)
T KOG1007|consen 110 -------------------------STLECVASLDTEAVGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSKIVAEVLS 163 (370)
T ss_pred -------------------------chhhHhhcCCHHHhCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcchheeecc
Confidence 0001112232 3556899999999 4455544 4899999999987763 222
Q ss_pred ----ecCCCeEEEEEec-CCCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCE-EEEEeCCCcEEEE
Q 002086 592 ----AHNDYVTCIQFNP-MDDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQN-ALIGSHKGSCRLY 663 (969)
Q Consensus 592 ----~h~~~V~sv~fsp-~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~-Lasgs~dg~I~Iw 663 (969)
.+....++-+|+| .+++.+++. .|+++..||+++......+ .|...|..+.|+|+-++ |++|+.||.|+||
T Consensus 164 s~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriW 242 (370)
T KOG1007|consen 164 SESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIW 242 (370)
T ss_pred cccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEE
Confidence 4677888999999 455666655 5899999999987644332 35677999999998764 6678999999999
Q ss_pred EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-----------------------ce
Q 002086 664 SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-----------------------IV 720 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-----------------------~~ 720 (969)
|++..+.. .....+|...|.++.|+|.-.+++++++.|..|.+|-... ..
T Consensus 243 D~R~tk~p-------v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~ 315 (370)
T KOG1007|consen 243 DTRKTKFP-------VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV 315 (370)
T ss_pred eccCCCcc-------ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence 99976642 2334789999999999998889999999999999995110 00
Q ss_pred ------EEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 002086 721 ------HKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 721 ------~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t 760 (969)
.......|...|.+++|+. |--.+|+-+.||.+.|=++..
T Consensus 316 kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 316 KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0112234677899999987 566788899999999877653
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-14 Score=157.90 Aligned_cols=249 Identities=15% Similarity=0.220 Sum_probs=170.0
Q ss_pred cccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
....|+.+.|.| |...||.++.||.|+||.+..+.+-.
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e----------------------------------------- 664 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE----------------------------------------- 664 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc-----------------------------------------
Confidence 346799999999 88899999999999999987543211
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPM 605 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~ 605 (969)
....|...+.+|...|+.+.|+| .+.|+++++|-+|+|||+.+++....+ +|++.|..++|+|
T Consensus 665 -------------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp- 730 (1012)
T KOG1445|consen 665 -------------NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP- 730 (1012)
T ss_pred -------------ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-
Confidence 12234457889999999999999 799999999999999999998876555 9999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEecC---CCCEEEEEEccCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeee
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWTDL---HEMVTAACYTPDGQNALIGSHKG----SCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~---~~~V~sv~fspdg~~Lasgs~dg----~I~IwDl~~~~~~~~~~~~~ 678 (969)
++..+++.+.||+|++|..+.++.-...+. ...--.|.|.-+|+++++.+.|. .|.+||..+..........+
T Consensus 731 dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l 810 (1012)
T KOG1445|consen 731 DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL 810 (1012)
T ss_pred CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee
Confidence 999999999999999999987653322221 12345678888999988876554 68888876544221111100
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
. -.-.+.--.+.+|...++++|-.|..|++|.+.. ....+..+.....-..++|.+..+.=+..- ..-+.
T Consensus 811 D-----vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K~~CdV~~V--Ef~~c 883 (1012)
T KOG1445|consen 811 D-----VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQKLKCDVMAV--EFQVC 883 (1012)
T ss_pred c-----ccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeecccccceeee--ehhhh
Confidence 0 0001111125566667888899999999998543 222233333333333556655433211111 12345
Q ss_pred EEcCC
Q 002086 756 WKREE 760 (969)
Q Consensus 756 Wdl~t 760 (969)
|.+..
T Consensus 884 ~RL~~ 888 (1012)
T KOG1445|consen 884 WRLSD 888 (1012)
T ss_pred hhhcc
Confidence 66654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-13 Score=143.32 Aligned_cols=207 Identities=14% Similarity=0.201 Sum_probs=166.9
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC------CcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeE
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET------KSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKV 619 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t------~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I 619 (969)
.+.+|.+.|.+|.|+. +++|++|+.|..+++|++.. .+++.+. .|...|.|++|.- .+.++++|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 5679999999999998 89999999999999999853 4566666 4678999999998 77899999999999
Q ss_pred EEEeCCCceEEEEecCCC---CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 620 RIWSISDRLVVDWTDLHE---MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 620 ~IWDl~~~~~~~~~~~~~---~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.+-|+.+.+.+....+.. .|+.+..+|..+.|++.+.++.|.+||.+.......... ..........+.|+|
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-----~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-----PANSGKNFYTAEFHP 204 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-----ecCCCccceeeeecC
Confidence 999999999888887775 899999999999999999999999999987652211111 134456778899999
Q ss_pred CCCceEEEEeCCCcEEEEeCCcceEEE---Eee---c-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIVHKF---RGF---R-NTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~~~~---~~~---~-~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
..+.+|++.+..+.+-+||.+.....+ .++ . ....-+++.|+|.|..|++--....-.+||+.++
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc
Confidence 999999999999999999976533221 111 1 1222357889999999988877777788998873
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-13 Score=140.74 Aligned_cols=247 Identities=15% Similarity=0.196 Sum_probs=167.2
Q ss_pred CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecC
Q 002086 464 RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLS 543 (969)
Q Consensus 464 ~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 543 (969)
..+|++-..|.|+|||..+++.+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~-------------------------------------------------------- 64 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE-------------------------------------------------------- 64 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh--------------------------------------------------------
Confidence 568888889999999999877655
Q ss_pred CCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEEEEe---ecC-CCeEEEEEecCCCCEEEEEEC-
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCLKLF---AHN-DYVTCIQFNPMDDDYFISGSL- 615 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~-~~V~sv~fsp~~~~~L~sgs~- 615 (969)
.+++|...+..+.|.. .+.+++|+.||+|++||++.......+ ++. .+..|++.+- .++.+++|..
T Consensus 65 -----~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~ 138 (376)
T KOG1188|consen 65 -----EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTEL 138 (376)
T ss_pred -----eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEecccc
Confidence 4555666666777754 578999999999999999987766555 343 4677777764 5666776643
Q ss_pred ---CCeEEEEeCCCceE-EE--EecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC
Q 002086 616 ---DAKVRIWSISDRLV-VD--WTDLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK 688 (969)
Q Consensus 616 ---Dg~I~IWDl~~~~~-~~--~~~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~ 688 (969)
|-.|.+||++..+. +. ...|.+.|+++.|+|. .++|++|+.||.|.|||+........ ......+...
T Consensus 139 ~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa-----L~~viN~~sS 213 (376)
T KOG1188|consen 139 TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA-----LLHVINHGSS 213 (376)
T ss_pred ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh-----HHHhhcccce
Confidence 56799999998754 32 3457789999999995 56889999999999999976532110 1111456778
Q ss_pred eEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeec------------CCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 002086 689 ITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFR------------NTSSQISAAFNADGKYIISASE-DSQVYV 755 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~------------~~~~V~sl~fspdg~~LaSgs~-Dg~I~I 755 (969)
|.++.|...+-..|.+-+...+..+|+............ ...++.......++.+++.++. -+...+
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~ 293 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTI 293 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeE
Confidence 999999987756799999999999999654332221111 1122333222335555555555 566666
Q ss_pred EEcCCCCccCCCceeEEecccC
Q 002086 756 WKREEHRNASTGKRAIITTRNH 777 (969)
Q Consensus 756 Wdl~t~~~~~t~k~~~~~~~~~ 777 (969)
+-+.........+.+.++...+
T Consensus 294 ~~~~~~~s~~~~~~~a~l~g~~ 315 (376)
T KOG1188|consen 294 FPLVDTSSGSLLTEPAILQGGH 315 (376)
T ss_pred EEeeecccccccCccccccCCc
Confidence 6666433333334444444433
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-11 Score=145.89 Aligned_cols=254 Identities=20% Similarity=0.266 Sum_probs=182.9
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.|.-.++|.++||.++++|+|..||.|.+|.--..+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-------------------------------------------- 238 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-------------------------------------------- 238 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccc--------------------------------------------
Confidence 477789999999999999999999999999732100
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDD 607 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~ 607 (969)
........+.-|...|.++.|+. +.+|++|+..|-+.+|.+.+++....-.-.++|..+.++| ++
T Consensus 239 -------------~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds 304 (792)
T KOG1963|consen 239 -------------DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP-DS 304 (792)
T ss_pred -------------cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC-CC
Confidence 00111236778999999999998 9999999999999999999999333336789999999999 99
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEEe------------cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 608 DYFISGSLDAKVRIWSISDRLVVDWT------------DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~~~~~------------~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
++.+....|..|.+....+....... ...+-.+.++++|.-+.++..+..|.|.+||+.+.......+
T Consensus 305 ~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 305 DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 99999999999999988554332111 112346778888877777888888888888876544322111
Q ss_pred ee-----------------------------------------------------------ecc-cccCCCCCeEEEEEc
Q 002086 676 VD-----------------------------------------------------------FQT-KKKSSTRKITGFQFS 695 (969)
Q Consensus 676 ~~-----------------------------------------------------------~~~-~~~~h~~~It~l~fs 695 (969)
+. +.. -...|...+...+|.
T Consensus 385 v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~ 464 (792)
T KOG1963|consen 385 VCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFL 464 (792)
T ss_pred EEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEe
Confidence 10 000 013344444444444
Q ss_pred C-CCCceEEEEeCCCcEEEEeC------C----cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 696 P-SNPSEVLVTSADSRIRILDG------L----DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 696 p-d~~~~l~sgs~Dg~I~IwD~------~----~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+ ......++++.||.++||-. . ...+...+.-+..++++++|+.||..| +.+.|+.|.|||..+.
T Consensus 465 ~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 465 NPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDTK 540 (792)
T ss_pred cCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCCh
Confidence 3 33237888999999999974 1 234445555577889999999999655 5556889999999983
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-12 Score=135.05 Aligned_cols=236 Identities=14% Similarity=0.195 Sum_probs=177.0
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
...|..+.|..|...|..|+.|| .+++.....+...
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~------------------------------------------- 40 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF------------------------------------------- 40 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh-------------------------------------------
Confidence 45677888999999999999999 4788766422100
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCC--cEEEEECCCCcEEEEeecCCCeEEEEEecCCCC
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDK--TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDD 608 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~Dg--tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~ 608 (969)
........|.-+-|+. .+++..+.+. .+++.+++.+..+..+.....|.+|.++. +
T Consensus 41 ------------------~~~~~~~~IvEmLFSS-SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr---~ 98 (391)
T KOG2110|consen 41 ------------------SKDTEGVSIVEMLFSS-SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR---K 98 (391)
T ss_pred ------------------cccCCCeEEEEeeccc-ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc---c
Confidence 0000112334444553 5555555443 49999999999999888999999999964 6
Q ss_pred EEEEEECCCeEEEEeCCCceEEEEecCC----CCEEEEEEccCCCEEEEE--eCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 609 YFISGSLDAKVRIWSISDRLVVDWTDLH----EMVTAACYTPDGQNALIG--SHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~~~~~~~~~----~~V~sv~fspdg~~Lasg--s~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
.|+++-.+. |+|||+++.+++..+... ..+.++++++.+.+++.- ...|.|.|||+.+.+.....
T Consensus 99 RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I-------- 169 (391)
T KOG2110|consen 99 RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI-------- 169 (391)
T ss_pred eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE--------
Confidence 666666554 999999999988755433 446666666667788863 35789999999887755433
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCc-EEEEeCCcceEEEEeec--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSR-IRILDGLDIVHKFRGFR--NTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~-I~IwD~~~~~~~~~~~~--~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
..|.+.+.+++|+++| .+|++++..|+ |||+.+.+....++... ....|.+++|+||+++|++.+..++|+||+++
T Consensus 170 ~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 6899999999999999 89999999997 79999876665554433 24567899999999999999999999999998
Q ss_pred CCC
Q 002086 760 EHR 762 (969)
Q Consensus 760 t~~ 762 (969)
...
T Consensus 249 ~~~ 251 (391)
T KOG2110|consen 249 KVS 251 (391)
T ss_pred ccc
Confidence 743
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-13 Score=139.03 Aligned_cols=245 Identities=14% Similarity=0.261 Sum_probs=176.1
Q ss_pred EEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCc--ccccccceeeeEecccccCEEEEEEeC-CCCE
Q 002086 389 HSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKS--YKDLSALHLCQEIQAHEGSIWTIKFSL-DARF 465 (969)
Q Consensus 389 ~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~--l~dl~~~~l~~~L~gH~~~I~~l~fSp-Dg~~ 465 (969)
..+.|.|+....++. ++ .....++++|..+.. -..++..--...-..|..++++..|+. |-++
T Consensus 100 tK~~wiPd~~g~~pd-lL-------------ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPD-LL-------------ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred cceEecCCccccCcc-hh-------------hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce
Confidence 334456677666663 22 233445666666532 112221111122345778999999997 7789
Q ss_pred EEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCC
Q 002086 466 LASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEK 545 (969)
Q Consensus 466 LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k 545 (969)
|.|+|-|-+..|||++++.. +.
T Consensus 166 igtSSiDTTCTiWdie~~~~----------------------------------------------------------~~ 187 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVS----------------------------------------------------------GT 187 (364)
T ss_pred eEeecccCeEEEEEEeeccc----------------------------------------------------------cc
Confidence 99999999999999987521 00
Q ss_pred ceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe---e-cCCCeEEEEEecCCCCEEEEEECC-Ce
Q 002086 546 PFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF---A-HNDYVTCIQFNPMDDDYFISGSLD-AK 618 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~-h~~~V~sv~fsp~~~~~L~sgs~D-g~ 618 (969)
....|..|..+|++|+|.. -+.|++.+.||.||+||++..+.-.++ . ...+..-++|++.+.+++++-..| ..
T Consensus 188 vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~ 267 (364)
T KOG0290|consen 188 VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK 267 (364)
T ss_pred eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence 1125778999999999998 589999999999999999987765554 2 267889999999888899886665 56
Q ss_pred EEEEeCCCc--eEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc
Q 002086 619 VRIWSISDR--LVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS 695 (969)
Q Consensus 619 I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs 695 (969)
|.|.|++.. .+..+..|...|+.++|.|.. ..|++++.|..+.|||+...-..... -..........|..++|+
T Consensus 268 V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~---dPilay~a~~EVNqi~Ws 344 (364)
T KOG0290|consen 268 VVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE---DPILAYTAGGEVNQIQWS 344 (364)
T ss_pred EEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC---Cchhhhhccceeeeeeec
Confidence 999999874 466788899999999999964 68889999999999999764321111 011112357789999999
Q ss_pred CCCCceEEEEeCC
Q 002086 696 PSNPSEVLVTSAD 708 (969)
Q Consensus 696 pd~~~~l~sgs~D 708 (969)
+..+..++++...
T Consensus 345 ~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 345 SSQPDWIAICFGK 357 (364)
T ss_pred ccCCCEEEEEecC
Confidence 9887788777543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-12 Score=151.53 Aligned_cols=315 Identities=14% Similarity=0.188 Sum_probs=210.1
Q ss_pred cccccccceeeeEecccccCEEEEEEeCCC---CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccc-cCCC-CCc
Q 002086 434 SYKDLSALHLCQEIQAHEGSIWTIKFSLDA---RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLC-NSSD-KAS 508 (969)
Q Consensus 434 ~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg---~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~-~~~~-~~~ 508 (969)
.++...++.++..|.+|..+++.+.+.|.. .++++++.||+|++||...+++++.+............ .... ...
T Consensus 40 ~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~ 119 (792)
T KOG1963|consen 40 KVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISAN 119 (792)
T ss_pred EEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccce
Confidence 445667778888999999999999999854 47889999999999999999999987655443322221 0000 000
Q ss_pred cCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEE
Q 002086 509 SLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCL 588 (969)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i 588 (969)
...+........ ............. .+-.........+..|.. -.+|.+++...+.....+..+.+|++.++...
T Consensus 120 ~~~s~~~~~~~~-~~s~~~~~q~~~~---~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~ 194 (792)
T KOG1963|consen 120 VYVSVEDYSILT-TFSKKLSKQSSRF---VLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKH 194 (792)
T ss_pred eEeecccceeee-ecccccccceeee---EeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEeccccee
Confidence 000000000000 0000000000000 000011111122333433 35677787666666666778999999886521
Q ss_pred E-----EeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-----ceEEEEecCCCCEEEEEEccCCCEEEEEeCCC
Q 002086 589 K-----LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-----RLVVDWTDLHEMVTAACYTPDGQNALIGSHKG 658 (969)
Q Consensus 589 ~-----~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-----~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg 658 (969)
. ...|...++|.+++| +++++++|..||.|.+|.--. .....+.-|...|++++|+++|.+|++|+..|
T Consensus 195 ~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 195 TSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred eccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccce
Confidence 1 115788899999999 999999999999999996433 23445556888999999999999999999999
Q ss_pred cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--EEEEee---------c
Q 002086 659 SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--HKFRGF---------R 727 (969)
Q Consensus 659 ~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~---------~ 727 (969)
.+.+|.+.+++.... ..-..+|..+.++||+ ...++...|..|.+....+.. ....+. .
T Consensus 274 VLv~Wq~~T~~kqfL---------PRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~ 343 (792)
T KOG1963|consen 274 VLVLWQLETGKKQFL---------PRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR 343 (792)
T ss_pred EEEEEeecCCCcccc---------cccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCcccccc
Confidence 999999999873222 4457899999999998 788888889999998743221 111111 1
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 002086 728 NTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 728 ~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
...-.+.++++|--+.++-.+..|.|.+||+-+.+.+
T Consensus 344 ~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 344 PQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred ccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 1233567889997778888899999999999875544
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=156.20 Aligned_cols=262 Identities=13% Similarity=0.199 Sum_probs=183.3
Q ss_pred cceeeeEecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.+.++..|..|...|..++.+++. .+|+|||.||+||||+...-..-. .
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~------------------------ 1086 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------G------------------------ 1086 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------c------------------------
Confidence 367888999999999999999865 899999999999999986421100 0
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEE-------EE
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCL-------KL 590 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i-------~~ 590 (969)
..+...++.-....+.++.+.+ ++.++.++.||.|++.++...... ..
T Consensus 1087 ------------------------s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri 1142 (1431)
T KOG1240|consen 1087 ------------------------SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRI 1142 (1431)
T ss_pred ------------------------eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeec
Confidence 0011123333567888999888 899999999999999999862211 11
Q ss_pred e--ecCCC-eEEEEEecCCCC-EEEEEECCCeEEEEeCCCceEEE---EecCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 002086 591 F--AHNDY-VTCIQFNPMDDD-YFISGSLDAKVRIWSISDRLVVD---WTDLHEMVTAACYTPDGQNALIGSHKGSCRLY 663 (969)
Q Consensus 591 ~--~h~~~-V~sv~fsp~~~~-~L~sgs~Dg~I~IWDl~~~~~~~---~~~~~~~V~sv~fspdg~~Lasgs~dg~I~Iw 663 (969)
. ...+. |..-+|...... .++.+...+.|..||+++..... ....++.|++++.+|.+.++++|+..|.+.+|
T Consensus 1143 ~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lW 1222 (1431)
T KOG1240|consen 1143 PNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLW 1222 (1431)
T ss_pred ccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEE
Confidence 1 12233 344455443444 77788888999999998865443 33345789999999999999999999999999
Q ss_pred EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC--ceEEEEe--CCCcEEEEeCCcceEEEEeecC-----------
Q 002086 664 SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP--SEVLVTS--ADSRIRILDGLDIVHKFRGFRN----------- 728 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~--~~l~sgs--~Dg~I~IwD~~~~~~~~~~~~~----------- 728 (969)
|++-+....... ..+..+|..+..+|..+ ...++++ ..+.|.+|+..+..+.......
T Consensus 1223 DLRF~~~i~sw~-------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~P 1295 (1431)
T KOG1240|consen 1223 DLRFRVPILSWE-------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALP 1295 (1431)
T ss_pred EeecCceeeccc-------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcc
Confidence 999776544332 34557777777776544 4555543 5778999996654333222111
Q ss_pred --------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 729 --------TSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 729 --------~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
......+++..-+.++++|+.|+.|+.||...++
T Consensus 1296 s~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1296 SNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 1122344555567799999999999999998754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-13 Score=149.13 Aligned_cols=191 Identities=16% Similarity=0.301 Sum_probs=147.8
Q ss_pred CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEE
Q 002086 543 SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRI 621 (969)
Q Consensus 543 ~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~I 621 (969)
.++....+..|.+.|.+-.|++ |.-|++++.||.|++|.-...-.-.......+|.|++|.|...+.+++.+ +.+.|
T Consensus 93 ~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~I 170 (737)
T KOG1524|consen 93 SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISI 170 (737)
T ss_pred cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEE
Confidence 4444556788999999999999 88999999999999998653322223367889999999995455555543 45666
Q ss_pred EeCCC-ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCc
Q 002086 622 WSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS 700 (969)
Q Consensus 622 WDl~~-~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~ 700 (969)
=.+.. .+++.+..|.+-|.++.|++..+.+++|++|-..+|||-....+.. ...|..+|++++|.|+ .
T Consensus 171 KpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~---------S~~~ey~ITSva~npd--~ 239 (737)
T KOG1524|consen 171 KPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT---------SAAEEYAITSVAFNPE--K 239 (737)
T ss_pred eecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc---------CChhccceeeeeeccc--c
Confidence 66654 4688999999999999999999999999999999999987654422 2678999999999998 4
Q ss_pred eEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 701 EVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 701 ~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
.+++++.+ ++| +. ....+.|..++||+||..+++|+..|.+.+=-+
T Consensus 240 ~~~v~S~n-t~R----------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 240 DYLLWSYN-TAR----------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ceeeeeee-eee----------ec-CCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 56665532 233 11 235678999999999999999999998765433
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=152.89 Aligned_cols=207 Identities=14% Similarity=0.167 Sum_probs=154.6
Q ss_pred CCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcE--E-----EEeecCCCeEEEEEecCCCC--EEEEEECCCeEEE
Q 002086 553 HLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSC--L-----KLFAHNDYVTCIQFNPMDDD--YFISGSLDAKVRI 621 (969)
Q Consensus 553 H~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~--i-----~~~~h~~~V~sv~fsp~~~~--~L~sgs~Dg~I~I 621 (969)
-...|.|+.|+| .++++.|+.+|.|.+||+..+.. . ....|..+|+.+.|.. +.. -|++++.||.|..
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICS 319 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-cCCCCceEEEecCCcEee
Confidence 457899999999 68999999999999999987665 2 2227999999999987 443 4999999999999
Q ss_pred EeCCCceE------EEEe-------cCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 622 WSISDRLV------VDWT-------DLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 622 WDl~~~~~------~~~~-------~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
|+++.-.. .... .....++++.|.+. -..|++|+..|.|.--+-...................|.+
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 98865321 1111 22245899999984 4678999999998874444333222111122233467899
Q ss_pred CeEEEEEcCCCCceEEEEeCCCcEEEEeCC-cceEEEEeecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCC
Q 002086 688 KITGFQFSPSNPSEVLVTSADSRIRILDGL-DIVHKFRGFRNTSSQISAAFNADG-KYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg-~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+|+.+.++|-....+++++ |.+++||... .....+....+...+++++|||-. ..|+++..||.|.|||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 9999999999866666666 9999999966 555555555666779999999965 57788888999999999864
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-12 Score=150.39 Aligned_cols=247 Identities=18% Similarity=0.217 Sum_probs=174.4
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
+..++-..+.|+|=...++++...-.|+|||.+.++.+..+....
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~----------------------------------- 1106 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA----------------------------------- 1106 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC-----------------------------------
Confidence 334466778899988889999877889999999888765332110
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEEC-CC----CcEEEEe--------e
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDM-ET----KSCLKLF--------A 592 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl-~t----~~~i~~~--------~ 592 (969)
.....|+.+.+-. ..++++|+.||.|+||+- .. .+.+..+ +
T Consensus 1107 -----------------------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~ 1163 (1387)
T KOG1517|consen 1107 -----------------------FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPG 1163 (1387)
T ss_pred -----------------------CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCcc
Confidence 1234577777765 478999999999999963 22 2333322 1
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC--CCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCc
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL--HEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~--~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
-.+.-.-+.|.. ...+|+++|.-..|+|||.....++.-... ...|+++.-+- .|+.|++|..||.|++||.+...
T Consensus 1164 ~r~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~ 1242 (1387)
T KOG1517|consen 1164 ARGTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP 1242 (1387)
T ss_pred CCCCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCC
Confidence 112224567877 555666666678999999998877765443 34566665443 47999999999999999998754
Q ss_pred eeeeeeeeecccccCCCCC--eEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEEE-Ee--ec-CCCCeEEEEEeCCCC
Q 002086 670 LHQLNQVDFQTKKKSSTRK--ITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHKF-RG--FR-NTSSQISAAFNADGK 742 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~--It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~~-~~--~~-~~~~V~sl~fspdg~ 742 (969)
.... ....+.|... |..+.+.+.|-..|++|+.||.|++||++. ....+ .. +. .....+++..+++..
T Consensus 1243 ~ds~-----v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap 1317 (1387)
T KOG1517|consen 1243 PDSL-----VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP 1317 (1387)
T ss_pred cccc-----ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC
Confidence 4211 1112445555 999999998866899999999999999775 22211 11 11 123589999999999
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 002086 743 YIISASEDSQVYVWKREE 760 (969)
Q Consensus 743 ~LaSgs~Dg~I~IWdl~t 760 (969)
.+|+|+. +.|+||++..
T Consensus 1318 iiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1318 IIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred eeeecCc-ceEEEEecCh
Confidence 9999998 9999999985
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-13 Score=150.39 Aligned_cols=221 Identities=17% Similarity=0.188 Sum_probs=159.8
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+.+.+|++|.++|.|+++.+.+.++.+||.||+|+.|++-...- .+.. .
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d--p~ds---------------------~------- 383 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD--PDDS---------------------Y------- 383 (577)
T ss_pred eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC--cccc---------------------c-------
Confidence 456778999999999999999999999999999999998751100 0000 0
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDY 596 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~ 596 (969)
-.......+.||++.|+.++++. ...|++++.||+|++|+...... .+| ...+.
T Consensus 384 ---------------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 384 ---------------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred ---------------------CcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 00011226889999999999998 78899999999999999987776 444 23445
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC--------CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL--------HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~--------~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
-.++.|-.......++...-+.--++++....-+.++.. ...+..+.++|.+.+.+++..|+.|+++|..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 567777541222333333333333344443333332221 134778899999999999999999999999998
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK 722 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~ 722 (969)
++.... ..|...++++++.|.+ -+|++++.|+.+++|......+.
T Consensus 522 ~~l~s~--------~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 522 KILHSM--------VAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ccchhe--------eeccceecceeecCCC-ceEEeecCCceeehhhccchhee
Confidence 865432 6788899999999988 79999999999999986544433
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=146.12 Aligned_cols=281 Identities=19% Similarity=0.243 Sum_probs=192.3
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
+..++++.|. |...-+.|..+|||+|| |||-.--.|++||+....+-..-......+........ .+..
T Consensus 40 ~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD-------~SK~-- 109 (703)
T KOG2321|consen 40 QRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDD-------YSKS-- 109 (703)
T ss_pred HHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccc-------hhhh--
Confidence 3345555554 88999999999999965 66777889999999865443211111111111111000 0000
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEecc----C-C----CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIG----H-L----DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC 587 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~g----H-~----~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~ 587 (969)
++ +.......|.. | . ..-.+++++. ..-|+.++....|+-+++..|..
T Consensus 110 ---------------------v~-L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf 167 (703)
T KOG2321|consen 110 ---------------------VF-LQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF 167 (703)
T ss_pred ---------------------eE-eecCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccc
Confidence 00 00000001110 0 0 1123566664 55566666667899999999999
Q ss_pred EEEeec-CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC------------CCEEEEEEccCCCEEEEE
Q 002086 588 LKLFAH-NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH------------EMVTAACYTPDGQNALIG 654 (969)
Q Consensus 588 i~~~~h-~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~------------~~V~sv~fspdg~~Lasg 654 (969)
+..+.. .+.+++|..++ ...+|++|+.+|.|-.||.++...+...... ..|+++.|+.+|-.+++|
T Consensus 168 L~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVG 246 (703)
T KOG2321|consen 168 LNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVG 246 (703)
T ss_pred ccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEee
Confidence 998854 48999999999 8889999999999999999987655433322 239999999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEE
Q 002086 655 SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQIS 734 (969)
Q Consensus 655 s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~s 734 (969)
+.+|.+.|||++..+.... +......+|..+.|.+.+.+-.++......++|||-..... +........+..
T Consensus 247 ts~G~v~iyDLRa~~pl~~-------kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~-~asiEpt~~lND 318 (703)
T KOG2321|consen 247 TSTGSVLIYDLRASKPLLV-------KDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP-MASIEPTSDLND 318 (703)
T ss_pred ccCCcEEEEEcccCCceee-------cccCCccceeeecccccCCCceEEecchHHhhhcccccCCc-eeeccccCCcCc
Confidence 9999999999999876533 22456778999999887655566666677899999554333 223344556889
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 735 AAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 735 l~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+|+-|++.+++++-+++.+..|=+..
T Consensus 319 ~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 319 FCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred eeeecCCceEEEecCCCcceeEEccc
Confidence 99999999999999999888887765
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.9e-13 Score=145.59 Aligned_cols=190 Identities=23% Similarity=0.348 Sum_probs=146.6
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCccc
Q 002086 455 WTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVH 534 (969)
Q Consensus 455 ~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 534 (969)
.+++|+.+|..|+||+.||++|||++.....+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~------------------------------------------------ 179 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI------------------------------------------------ 179 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh------------------------------------------------
Confidence 78999999999999999999999997643322
Q ss_pred ccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCCC---
Q 002086 535 VPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDD--- 607 (969)
Q Consensus 535 ~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~~--- 607 (969)
.....|.+.|.++.|+| ++.|++-+.| ..+||+++++.++... ........+.|+. ++
T Consensus 180 -------------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~ 244 (398)
T KOG0771|consen 180 -------------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQE 244 (398)
T ss_pred -------------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCc
Confidence 13456999999999999 7799999999 9999999999777655 3344566777876 44
Q ss_pred CEEEE--EECCCeEEEEeCCCc------eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec
Q 002086 608 DYFIS--GSLDAKVRIWSISDR------LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 608 ~~L~s--gs~Dg~I~IWDl~~~------~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
.+++. ...-+.|+.||+..- +..+.......|++++.+++|++++.|+.+|.|.||+..+.+..+..
T Consensus 245 ~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v----- 319 (398)
T KOG0771|consen 245 TLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV----- 319 (398)
T ss_pred eEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee-----
Confidence 33332 233455777665321 22233344567999999999999999999999999999887764432
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
...|...|+.+.|+|+. ++++..+.+.++.+..
T Consensus 320 --k~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 320 --KEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTK 352 (398)
T ss_pred --hhhheeeeeeEEEcCCc-CcccccccCCceeEEE
Confidence 37899999999999987 7888888888877765
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8e-13 Score=146.32 Aligned_cols=188 Identities=16% Similarity=0.339 Sum_probs=146.9
Q ss_pred cceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
..+.-+.+.+|.++|.|-.|+|||.-|+|+|+||.|++|.-.. -+
T Consensus 93 ~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-ML---------------------------------- 137 (737)
T KOG1524|consen 93 SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-ML---------------------------------- 137 (737)
T ss_pred cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hH----------------------------------
Confidence 3445566889999999999999999999999999999998532 10
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc-EEEEeecCCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS-CLKLFAHNDY 596 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~-~i~~~~h~~~ 596 (969)
..++.....+|+|++|.| ++.+++. .+.+.|=-+.... .++--.|.+-
T Consensus 138 ---------------------------RStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGi 188 (737)
T KOG1524|consen 138 ---------------------------RSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGL 188 (737)
T ss_pred ---------------------------HHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeecccccceeEEeccCcE
Confidence 002333567899999999 3344433 3556666655443 4444589999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV 676 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~ 676 (969)
|.++.|++ ..+++++|+.|-..+|||.....+.....|..+|++++|.|+ +.+++++.+ ++++
T Consensus 189 iL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~-------------- 251 (737)
T KOG1524|consen 189 VLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF-------------- 251 (737)
T ss_pred EEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee-eeee--------------
Confidence 99999999 899999999999999999998888888889999999999999 777777643 3331
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw 714 (969)
.+...+.|..++|++|| ..+++|+..|.+.+-
T Consensus 252 -----~~p~~GSifnlsWS~DG-TQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 252 -----SSPRVGSIFNLSWSADG-TQATCGTSTGQLIVA 283 (737)
T ss_pred -----cCCCccceEEEEEcCCC-ceeeccccCceEEEe
Confidence 14557789999999999 789999999987663
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.6e-12 Score=138.15 Aligned_cols=197 Identities=20% Similarity=0.254 Sum_probs=153.4
Q ss_pred EEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec-
Q 002086 558 LDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD- 634 (969)
Q Consensus 558 ~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~- 634 (969)
.+++|+. +..|++|+.||++|||++.....+... .|...|.++.|+| ++.+|++.+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899998 799999999999999998776665544 8999999999999 99999999999 89999999996655444
Q ss_pred --CCCCEEEEEEccCC---CE--EEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 635 --LHEMVTAACYTPDG---QN--ALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 635 --~~~~V~sv~fspdg---~~--Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
.......+.|+.++ .+ ++....-+.|+.|++......... ...+.......|++++.+++| .+++.|+.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l---~~~~~~~~~~siSsl~VS~dG-kf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL---RLRKKIKRFKSISSLAVSDDG-KFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc---chhhhhhccCcceeEEEcCCC-cEEEEecc
Confidence 23446778888776 32 233445567787777543321110 111113345689999999998 89999999
Q ss_pred CCcEEEEeCCcceEEE-EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 708 DSRIRILDGLDIVHKF-RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 708 Dg~I~IwD~~~~~~~~-~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
||.|-|++..+....+ ....|...|+.+.|+||.+++++-+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999987765544 3456778999999999999999999999999988865
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-12 Score=133.19 Aligned_cols=252 Identities=17% Similarity=0.276 Sum_probs=184.4
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
+.--..+|+|.+|++|+..+|.+-....|.||.....+.
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~----------------------------------------- 44 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL----------------------------------------- 44 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------------------------------------
Confidence 333467999999999999999999999999998764331
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC-c---EEEEeecCCCeEEEE
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK-S---CLKLFAHNDYVTCIQ 601 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~-~---~i~~~~h~~~V~sv~ 601 (969)
.++..++..|...|++|+|.| .+.|++++.|..-++|....+ + .+.++.++..+++|.
T Consensus 45 -----------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~ 107 (361)
T KOG1523|consen 45 -----------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVK 107 (361)
T ss_pred -----------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEe
Confidence 233457888999999999999 789999999999999999443 3 233458999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEE-----EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee----
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVV-----DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ---- 672 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-----~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~---- 672 (969)
|+| .++.|++|+.-..|.||-++...-- ....+...|+++.|+|++-+|++|+.|+.++||..--.....
T Consensus 108 WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap 186 (361)
T KOG1523|consen 108 WSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAP 186 (361)
T ss_pred ecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCC
Confidence 999 9999999999999999988765422 223345679999999999999999999999999753211100
Q ss_pred ---eeeee---ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE-EEEeecCCCCeEEEEEeCCCCEEE
Q 002086 673 ---LNQVD---FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH-KFRGFRNTSSQISAAFNADGKYII 745 (969)
Q Consensus 673 ---~~~~~---~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~-~~~~~~~~~~V~sl~fspdg~~La 745 (969)
-..++ +..+.....+.+..+.|+|+| ..|+-.+.|.++.+-|...... .........+..++.|-.+. .++
T Consensus 187 ~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv 264 (361)
T KOG1523|consen 187 TPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVV 264 (361)
T ss_pred CCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-cee
Confidence 00000 111223567889999999998 7899999999999999554321 11111222556677776543 456
Q ss_pred EEeCCCcEEEEEcC
Q 002086 746 SASEDSQVYVWKRE 759 (969)
Q Consensus 746 Sgs~Dg~I~IWdl~ 759 (969)
.++.|..=.++...
T Consensus 265 ~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 265 AAGYDCGPVLFVTD 278 (361)
T ss_pred ecCCCCCceEEEec
Confidence 66666544444443
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-11 Score=124.34 Aligned_cols=247 Identities=11% Similarity=0.128 Sum_probs=174.6
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
...|++-+++|.+++|+.|..+|+|-+..+.....- +.
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~--------------------------sa---------------- 47 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG--------------------------SA---------------- 47 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc--------------------------cc----------------
Confidence 456778899999999999999999999988641100 00
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcE-------EEEe--ec-----CCC
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSC-------LKLF--AH-----NDY 596 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~-------i~~~--~h-----~~~ 596 (969)
......++..+++|.++|+.++|. +.+|++|+. |.|+-|..+.... .... .| -..
T Consensus 48 ---------~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPe 116 (325)
T KOG0649|consen 48 ---------EPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPE 116 (325)
T ss_pred ---------CCCCCcceeeccccCCCeeeeeee-hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCc
Confidence 001123344568999999999999 466776665 9999998765332 1111 12 246
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
|+++-..| ..+-++.++.|+.++.||+++|++.. +.+|.+.|.++.--.....+++|++||+++|||+++.+......
T Consensus 117 INam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 117 INAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred cceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 89999999 55666666689999999999998765 56788999999986666789999999999999999998876543
Q ss_pred eeeccc-ccC-CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 676 VDFQTK-KKS-STRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 676 ~~~~~~-~~~-h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
...... .+. -...|-+++.+.+ +++ ++..-.+.+|.++. ..+.+.. ...+..+.|.. ..+++++..+
T Consensus 196 ~yk~~~~lRp~~g~wigala~~ed---Wlv-CGgGp~lslwhLrsse~t~vfpi---pa~v~~v~F~~--d~vl~~G~g~ 266 (325)
T KOG0649|consen 196 PYKNPNLLRPDWGKWIGALAVNED---WLV-CGGGPKLSLWHLRSSESTCVFPI---PARVHLVDFVD--DCVLIGGEGN 266 (325)
T ss_pred cccChhhcCcccCceeEEEeccCc---eEE-ecCCCceeEEeccCCCceEEEec---ccceeEeeeec--ceEEEecccc
Confidence 321111 122 3455777877652 444 45566789999764 3344433 34566777854 4788888888
Q ss_pred cEEEEEcCC
Q 002086 752 QVYVWKREE 760 (969)
Q Consensus 752 ~I~IWdl~t 760 (969)
.|.-|.+..
T Consensus 267 ~v~~~~l~G 275 (325)
T KOG0649|consen 267 HVQSYTLNG 275 (325)
T ss_pred ceeeeeecc
Confidence 999999874
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-12 Score=137.03 Aligned_cols=166 Identities=24% Similarity=0.401 Sum_probs=133.1
Q ss_pred ccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 451 EGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 451 ~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
..+|..+.|.++.. .|||||.|..|+||.+..++.-.. .
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~------------------------~---------------- 52 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG------------------------D---------------- 52 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC------------------------c----------------
Confidence 45799999998766 999999999999999875432110 0
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC--------C-----Cc---EEEEe-
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME--------T-----KS---CLKLF- 591 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~--------t-----~~---~i~~~- 591 (969)
..-+.+..|..|...|+++.|+| +++|++|+.+|.|.+|-.. + .+ ..+..
T Consensus 53 ------------~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr 120 (434)
T KOG1009|consen 53 ------------MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR 120 (434)
T ss_pred ------------eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec
Confidence 00012236788999999999999 8999999999999999776 3 11 11222
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
+|...|..++|+| +++++++++.|..+++||+..+++.... .|...+..++|.|-++++++-+.|...+++.+...+
T Consensus 121 ~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 121 GHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred ccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence 7999999999999 9999999999999999999999887655 566889999999999999999888877777665443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-10 Score=125.57 Aligned_cols=234 Identities=15% Similarity=0.207 Sum_probs=157.2
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
....|.++.++. +.|+.+=++. |.|||+.+.+++.+++.
T Consensus 86 fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t-------------------------------------- 124 (391)
T KOG2110|consen 86 FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIET-------------------------------------- 124 (391)
T ss_pred cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhc--------------------------------------
Confidence 356788888874 4577776655 99999999888775331
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEE--eCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSS--SMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPM 605 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sg--s~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~ 605 (969)
...+...+.++.++. +.+|+.= ...|.|.|||+.+-+.+..+ .|.+.+.|++|++
T Consensus 125 --------------------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~- 183 (391)
T KOG2110|consen 125 --------------------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP- 183 (391)
T ss_pred --------------------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-
Confidence 112444566666666 4566543 24689999999999888777 8999999999999
Q ss_pred CCCEEEEEECCCe-EEEEeCCCceEEEEecCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 606 DDDYFISGSLDAK-VRIWSISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 606 ~~~~L~sgs~Dg~-I~IWDl~~~~~~~~~~~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+|.+|++++..|+ |||+.+.+|+.+..+... ..|.+++|+|++++|++.+..++|+||.+........... ..
T Consensus 184 ~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p---~~ 260 (391)
T KOG2110|consen 184 DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESP---TA 260 (391)
T ss_pred CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCC---CC
Confidence 9999999999998 799999999877655543 4589999999999999999999999999976542111000 00
Q ss_pred ccCCCCCe--EEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe--CCCCEEEEEeCCCcEEEEE
Q 002086 682 KKSSTRKI--TGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN--ADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 682 ~~~h~~~I--t~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs--pdg~~LaSgs~Dg~I~IWd 757 (969)
...-...+ ..+.+.|. +.-.+||........+...... -..+.+. +...++..++.||.++.|.
T Consensus 261 ~~~~~~~~sk~~~sylps-----------~V~~~~~~~R~FAt~~l~~s~~-~~~~~l~~~~~~~~v~vas~dG~~y~y~ 328 (391)
T KOG2110|consen 261 GTSWFGKVSKAATSYLPS-----------QVSSVLDQSRKFATAKLPESGR-KNICSLSSIQKIPRVLVASYDGHLYSYR 328 (391)
T ss_pred CCcccchhhhhhhhhcch-----------hhhhhhhhccceeEEEccCCCc-cceEEeeccCCCCEEEEEEcCCeEEEEE
Confidence 00000000 00011111 1112355444333333322221 1233444 5788999999999999999
Q ss_pred cCC
Q 002086 758 REE 760 (969)
Q Consensus 758 l~t 760 (969)
+.-
T Consensus 329 l~~ 331 (391)
T KOG2110|consen 329 LPP 331 (391)
T ss_pred cCC
Confidence 975
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.2e-11 Score=121.07 Aligned_cols=245 Identities=18% Similarity=0.270 Sum_probs=165.2
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
-..++|.++|+.++|. ..+|++|+ ||.|+=|.....+.-...+ +.
T Consensus 56 v~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K----~l---------------------------- 100 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATK----RL---------------------------- 100 (325)
T ss_pred eeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccch----hh----------------------------
Confidence 3458999999999998 45688876 6999999987532210000 00
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQF 602 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~f 602 (969)
|.. ..|.+.-.-.--.|+++...| .+-+++++.|+.++-||+++|+....+ +|++.|.++.-
T Consensus 101 ---------------we~-~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 101 ---------------WEV-KIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred ---------------hhh-cCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 000 000000011224678888887 566667779999999999999999988 89999999998
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC-----------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH-----------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~-----------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
-. ....+++|+.||+++|||.++++.+..+... ..|.+++. +..++++|+ ...+.+|.++..+..
T Consensus 165 R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 165 RN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred cc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCce
Confidence 55 6778999999999999999999877655432 23455554 455777765 567999999998887
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCC-CCEEEEEeCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD-GKYIISASED 750 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspd-g~~LaSgs~D 750 (969)
..+.+ ...+..+.|.. ..+++++....|.-|............. ....++..|+.. -++|-.++..
T Consensus 241 ~vfpi---------pa~v~~v~F~~---d~vl~~G~g~~v~~~~l~Gvl~a~ip~~-s~~c~s~s~~~~p~k~~s~ag~s 307 (325)
T KOG0649|consen 241 CVFPI---------PARVHLVDFVD---DCVLIGGEGNHVQSYTLNGVLQANIPVE-STACYSASWQTSPIKFISIAGFS 307 (325)
T ss_pred EEEec---------ccceeEeeeec---ceEEEeccccceeeeeeccEEEEeccCC-ccceeeecccCCceEEEEecccc
Confidence 66544 34567777875 4688888888899998655444332222 223344444432 2455555666
Q ss_pred CcEEEEE
Q 002086 751 SQVYVWK 757 (969)
Q Consensus 751 g~I~IWd 757 (969)
..+.|+.
T Consensus 308 ~~~~i~~ 314 (325)
T KOG0649|consen 308 NKLHILK 314 (325)
T ss_pred eeeeeee
Confidence 6666653
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-12 Score=128.41 Aligned_cols=262 Identities=18% Similarity=0.178 Sum_probs=168.3
Q ss_pred cccccceeeeEec-ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 436 KDLSALHLCQEIQ-AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 436 ~dl~~~~l~~~L~-gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
|.+++.+-.-.++ .|...|+.+.-.|+ ..|.|-+.|+++.+|++..+..+.......+.+..+.+.............
T Consensus 40 w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll 118 (323)
T KOG0322|consen 40 WVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLL 118 (323)
T ss_pred EEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhhe
Confidence 3555555555666 68889999999997 468899999999999998766555322211221111111100000000000
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--C--cEEEEEeCCCcEEEEECCCCcEEEE
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--S--HLLLSSSMDKTVRLWDMETKSCLKL 590 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~--~~L~Sgs~DgtV~IWDl~t~~~i~~ 590 (969)
...........+.. ......+..... .-.+..+.+.|..+.- + -+|++|-.+|.|.+||+.++..+..
T Consensus 119 ~yp~rgsde~h~~D----~g~~tqv~i~dd----~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~ 190 (323)
T KOG0322|consen 119 EYPSRGSDETHKQD----GGDTTQVQIADD----SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ 190 (323)
T ss_pred ecCCcccchhhhhc----cCccceeEccCc----hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec
Confidence 00000000000000 000000000000 1124566788877643 2 3677788999999999999743322
Q ss_pred -----------eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc--eE--E-EEecCCCCEEEEEEccCCCEEEEE
Q 002086 591 -----------FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--LV--V-DWTDLHEMVTAACYTPDGQNALIG 654 (969)
Q Consensus 591 -----------~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~--~-~~~~~~~~V~sv~fspdg~~Lasg 654 (969)
..|..+|.++.|.+ ..+.=++|+.+..+..|++... .+ . ...-.+-.|..+.+-||++.+|++
T Consensus 191 ~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATA 269 (323)
T KOG0322|consen 191 LPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATA 269 (323)
T ss_pred cccccccccchhhccCcceeeeech-hhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeec
Confidence 26999999999988 5666778888889999988643 21 1 122233458889999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 655 SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 655 s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
+.|+.|+||..++...+... +-|...|.+++|+|+. .++++++.|++|-+|++
T Consensus 270 GWD~RiRVyswrtl~pLAVL--------kyHsagvn~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 270 GWDHRIRVYSWRTLNPLAVL--------KYHSAGVNAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCcEEEEEeccCCchhhh--------hhhhcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence 99999999999998876543 5688999999999986 69999999999999985
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-10 Score=131.08 Aligned_cols=201 Identities=14% Similarity=0.157 Sum_probs=131.9
Q ss_pred CCEEEEEecC-CcEEEEE-eCCCcEEEEECC-CCcE--EEEeecCCCeEEEEEecCCCCEEEEEEC-CCeEEEEeCCC-c
Q 002086 555 DDVLDLSWSR-SHLLLSS-SMDKTVRLWDME-TKSC--LKLFAHNDYVTCIQFNPMDDDYFISGSL-DAKVRIWSISD-R 627 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~-t~~~--i~~~~h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl~~-~ 627 (969)
+....+.++| +++|+++ ..++.|.+|++. .+.. +...........++|+| ++++|++++. ++.|.+|++.. +
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCC
Confidence 3455788998 6777665 458899999997 3433 22333445678899999 8888877764 88999999964 2
Q ss_pred ---eEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeee-eeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 628 ---LVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQL-NQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 628 ---~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~-~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
+.+...........++++|+++++++++ .++.|.+||+.+...... ...... .........+.|+|++ .++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~---~~~g~~p~~~~~~pdg-~~l 189 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT---TVEGAGPRHMVFHPNQ-QYA 189 (330)
T ss_pred CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee---cCCCCCCceEEECCCC-CEE
Confidence 2223233334567889999999886655 569999999976332211 000000 1112346689999998 566
Q ss_pred EEEe-CCCcEEEEeCCc----c--eEEEEeec----CCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCC
Q 002086 703 LVTS-ADSRIRILDGLD----I--VHKFRGFR----NTSSQISAAFNADGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 703 ~sgs-~Dg~I~IwD~~~----~--~~~~~~~~----~~~~V~sl~fspdg~~LaSgs~-Dg~I~IWdl~t 760 (969)
+++. .+++|.+|+... . ...+.... +......+.|+|+|++|+++.. ++.|.+|+++.
T Consensus 190 yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 5555 489999999652 1 11111111 1122346889999999999865 78899999975
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=144.35 Aligned_cols=235 Identities=14% Similarity=0.158 Sum_probs=154.1
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC---CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCE
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD---AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQN 650 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D---g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~ 650 (969)
+..|.+||...........|...+.+.+|+| +++.|+.++.+ ..|++||+.+++...+.........++|+|||+.
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 5789999998776555557888999999999 99988887654 3699999998865444444444557899999998
Q ss_pred EEEEe-CCCcEEEE--EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC--cceEEEEe
Q 002086 651 ALIGS-HKGSCRLY--SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL--DIVHKFRG 725 (969)
Q Consensus 651 Lasgs-~dg~I~Iw--Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~--~~~~~~~~ 725 (969)
|+++. .+|.+.|| |+.++..... ..+...+....|+|++..+++++..++...||+.. .......
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~l---------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l- 331 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQL---------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV- 331 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEee---------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-
Confidence 88764 67766555 6655543221 23445678899999985445555567888888642 2222111
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEE
Q 002086 726 FRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQ 805 (969)
Q Consensus 726 ~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~ 805 (969)
.+.. ....|+|||++|+..+.++ |.+||+.++ +...+... ..
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g------~~~~lt~~-~~--------------------------- 373 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSG------STEVLSST-FL--------------------------- 373 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCC------CeEEecCC-CC---------------------------
Confidence 1222 3578999999999888764 666998773 21111100 00
Q ss_pred EcccccccCCCCcccccCCCCCCccccCCCCccccCCC--CCCccccCCCCCCCCccccccCCCC
Q 002086 806 TKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPK--KTNKVERVPSPPEEELSLISHDPGI 868 (969)
Q Consensus 806 ~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~--~s~~~~~~l~~pee~l~~is~hP~~ 868 (969)
...+.++|++.+++....++....|.. ..+...+.+..++..+....|+|-+
T Consensus 374 -----------~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 374 -----------DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred -----------CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence 012346888888887766665554432 2355556666666667777777754
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=143.50 Aligned_cols=174 Identities=21% Similarity=0.370 Sum_probs=138.7
Q ss_pred eEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCC-CEEEEEECCCeEEEEe
Q 002086 548 CSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDD-DYFISGSLDAKVRIWS 623 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~-~~L~sgs~Dg~I~IWD 623 (969)
.+|.||++.|.|+.|+. |.+|++||.|-.+.|||.-..+.+..+ +|...|.++.|.|..+ .++++|..|..|++||
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 47899999999999998 899999999999999999988888887 8999999999999544 5788999999999999
Q ss_pred CCCc-----------eEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeee-ee-ecccccCCCCCe
Q 002086 624 ISDR-----------LVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQ-VD-FQTKKKSSTRKI 689 (969)
Q Consensus 624 l~~~-----------~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~-~~-~~~~~~~h~~~I 689 (969)
+... ....+..|...|..++..|++ ..+.++++||+|+-||++......... .. .........-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9741 123355677888899999998 788899999999999999743221110 00 000112233567
Q ss_pred EEEEEcCCCCceEEEEeCCCcEEEEeCCcceE
Q 002086 690 TGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721 (969)
Q Consensus 690 t~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~ 721 (969)
.++.++|..+.+|++|+.|--.++||.+....
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lk 235 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLK 235 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhcc
Confidence 89999999999999999999999999654433
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=135.89 Aligned_cols=165 Identities=20% Similarity=0.263 Sum_probs=133.4
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEe-----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-------------
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLF-----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD------------- 626 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~-----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~------------- 626 (969)
+--|+.|=.-|.|.+.|....+..+.+ -....|+|+.|-|.+...|+++-.+|.+++||..-
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 455777777788888887765444444 24578999999998888999999999999997621
Q ss_pred -c---eE------------EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 627 -R---LV------------VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 627 -~---~~------------~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
+ .+ ..+.-....|...+|+|||++||+.+.||.++|||..+.+++... +...+...
T Consensus 265 ~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m--------kSYFGGLL 336 (636)
T KOG2394|consen 265 DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM--------KSYFGGLL 336 (636)
T ss_pred CCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH--------HhhccceE
Confidence 1 01 122223356889999999999999999999999999887654332 55678899
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN 738 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs 738 (969)
|++|+||+ ++|++|+.|.-|.||...+..-+..++.|...|..++|.
T Consensus 337 CvcWSPDG-KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 337 CVCWSPDG-KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEEcCCc-cEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 99999999 899999999999999999888888999999999999998
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.5e-13 Score=153.42 Aligned_cols=278 Identities=18% Similarity=0.248 Sum_probs=194.6
Q ss_pred CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEE
Q 002086 545 KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIW 622 (969)
Q Consensus 545 k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IW 622 (969)
+.+..+.||...|+|+.|.. +.++++|+.|..|+||.+.++.|+... +|.+.|+.++.+. +..++++++.|..|++|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEE
Confidence 34456889999999999998 999999999999999999999999887 9999999999997 77889999999999999
Q ss_pred eCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 623 SISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 623 Dl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
-+..+.++. +.+|.+.|++++|+|-. +.+.||++++||.+-. ..... ...........+..+.|...+ ..
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~-~~~y~---prp~~~~~~~~~~s~~~~~~~-~~ 330 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE-PRIYV---PRPLKFTEKDLVDSILFENNG-DR 330 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccc-ccccC---CCCCCcccccceeeeeccccc-cc
Confidence 999998775 56788999999999964 6778999999999811 11110 000111223455666676655 78
Q ss_pred EEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCce
Q 002086 702 VLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD-GKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHF 780 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspd-g~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~ 780 (969)
+++++.|+.-..|....... +...+.-+.++.| ..+.+++-.+-.+++|++.++.. ......+.+..
T Consensus 331 f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l------~H~l~ghsd~~ 398 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL------LHNLMGHSDEV 398 (1113)
T ss_pred cccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchh------hhhhcccccce
Confidence 99999999998887433211 1111111222222 25677888888999999998533 22233333333
Q ss_pred eeeeeEEeecCCCcccCCCCCccEEEcccccc------cCCCCcccccCCCCCCccccCCCCccccCCCC
Q 002086 781 QCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKR------ISSNPTSATSSPTKEGSPAGHSRRLLPPLPKK 844 (969)
Q Consensus 781 ~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~------~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~ 844 (969)
...++..-.+--.+-+|.++...+|....+.. .....+...||++|..+++...-+.+|.+.++
T Consensus 399 yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 399 YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred eeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 32222222222333467777777775544432 13456678899999998888888888777543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.7e-11 Score=125.97 Aligned_cols=208 Identities=15% Similarity=0.236 Sum_probs=166.5
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE---EEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC---LKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~---i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.+.--..+|+|.+|++ ...++.+.....|.||.....+. ..++ .|...|++|+|.| ..+.|++|+.|..-++|.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence 3334457899999998 78899999999999999887763 3344 7999999999999 889999999999999999
Q ss_pred CC-Cc---eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 624 IS-DR---LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 624 l~-~~---~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
.. .+ ..+.++.++..++++.|+|.++.|++|+....|.||-++...---. .+..++.+...|+++.|+|.+
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV----sKhikkPirStv~sldWhpnn- 158 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV----SKHIKKPIRSTVTSLDWHPNN- 158 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh----hhhhCCccccceeeeeccCCc-
Confidence 94 43 3566788899999999999999999999999999998876543211 122336678899999999987
Q ss_pred ceEEEEeCCCcEEEEeCC-----c------------ceEEEEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 700 SEVLVTSADSRIRILDGL-----D------------IVHKFRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~-----~------------~~~~~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
-++++|+.|+..|++... + ........ ...+.+..+.|+|+|..|+=.+.|+.|.+=|...+
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 789999999999998621 0 00011111 45677899999999999999999999999998775
Q ss_pred C
Q 002086 762 R 762 (969)
Q Consensus 762 ~ 762 (969)
.
T Consensus 239 ~ 239 (361)
T KOG1523|consen 239 S 239 (361)
T ss_pred c
Confidence 3
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-12 Score=140.46 Aligned_cols=301 Identities=17% Similarity=0.168 Sum_probs=209.8
Q ss_pred hhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchH
Q 002086 331 FEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQR 410 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~ 410 (969)
.+++.+|.+.|+.|.|-..+..++++++|..+..|. |.... ..+++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~Wd------W~~~~-~~l~f--------------------------- 180 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWD------WVSGS-PKLSF--------------------------- 180 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeeh------hhccC-ccccc---------------------------
Confidence 355678888888888888888888888888776664 21110 01111
Q ss_pred HHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeC--CCCEEEEEeCCCcEEEEecccceEEEe
Q 002086 411 EQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSL--DARFLASAGEDRVIHVWEVQECEVMSM 488 (969)
Q Consensus 411 ~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSp--Dg~~LaTgs~DgtVrIWDl~tg~~l~~ 488 (969)
..||...|...+|-| +.+-|++++.||.|++=.+.......
T Consensus 181 ------------------------------------~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e- 223 (559)
T KOG1334|consen 181 ------------------------------------ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVE- 223 (559)
T ss_pred ------------------------------------ccccccchhhhhccCCCCCcCceeccccCceeeeeecccccee-
Confidence 235777777777777 44579999999999986654211111
Q ss_pred ecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--Cc
Q 002086 489 SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SH 566 (969)
Q Consensus 489 ~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~ 566 (969)
....+..|.+.|..++.-| ..
T Consensus 224 ---------------------------------------------------------~t~rl~~h~g~vhklav~p~sp~ 246 (559)
T KOG1334|consen 224 ---------------------------------------------------------NTKRLAPHEGPVHKLAVEPDSPK 246 (559)
T ss_pred ---------------------------------------------------------cceecccccCccceeeecCCCCC
Confidence 0124566999999999988 57
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEe----ecCC---CeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-------EEEE
Q 002086 567 LLLSSSMDKTVRLWDMETKSCLKLF----AHND---YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-------VVDW 632 (969)
Q Consensus 567 ~L~Sgs~DgtV~IWDl~t~~~i~~~----~h~~---~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-------~~~~ 632 (969)
.|++++.|+.|.-+|++++.....+ .+.. ....|+.+|.+.++|++++.|..+++||.+.-. +-++
T Consensus 247 ~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f 326 (559)
T KOG1334|consen 247 PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKF 326 (559)
T ss_pred cccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhc
Confidence 8999999999999999887655443 3444 678999999777899999999999999986521 1112
Q ss_pred e------cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee---eee--eeeecccccCC--CCCeEEEEEcCCCC
Q 002086 633 T------DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH---QLN--QVDFQTKKKSS--TRKITGFQFSPSNP 699 (969)
Q Consensus 633 ~------~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~---~~~--~~~~~~~~~~h--~~~It~l~fspd~~ 699 (969)
. ...-.|++++|+.++.-|++...|-.|+++.-..+.-. ... ........++| ...|.++-|---..
T Consensus 327 ~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs 406 (559)
T KOG1334|consen 327 CPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS 406 (559)
T ss_pred CCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc
Confidence 1 12245999999999988999999999999954332220 000 00011112333 34577777764334
Q ss_pred ceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 700 SEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.++++|+.-|.|.||+... .+..+.+-.+ -|+|+.=+|--..||+++-|..|+||--.+.
T Consensus 407 EyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 407 EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ceEEecCccceEEEEecchhHHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 7999999999999999554 3344444433 6889999999999999999999999987543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.4e-10 Score=119.62 Aligned_cols=176 Identities=14% Similarity=0.273 Sum_probs=132.3
Q ss_pred CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEe---cCCCCEEEEEEccCCCE
Q 002086 575 KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWT---DLHEMVTAACYTPDGQN 650 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~---~~~~~V~sv~fspdg~~ 650 (969)
..|.|||=....++..+....+|.+|.+.+ +.|++.- .+.|+||...+. +.+..+ .....+.+++-..+..+
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 579999988888999999999999999975 5566554 578999998743 333222 22233333333334445
Q ss_pred EEE-EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc-EEEEeCCcce--EEEEee
Q 002086 651 ALI-GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR-IRILDGLDIV--HKFRGF 726 (969)
Q Consensus 651 Las-gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~-I~IwD~~~~~--~~~~~~ 726 (969)
||. |-.-|.|.|-|+...+..... ...+|...|.|++.+.+| ..+++++..|+ |||||..... ..++.-
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~------~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPS------IINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCce------EEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence 554 557799999999876652111 127899999999999998 89999999998 8999976544 344434
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 727 RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.....|.+++|||+..+|+++|+.|+|+||.+...
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 45667999999999999999999999999999874
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.9e-11 Score=137.95 Aligned_cols=206 Identities=16% Similarity=0.131 Sum_probs=142.1
Q ss_pred eeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC---CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEE
Q 002086 539 VFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGS 614 (969)
Q Consensus 539 v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs 614 (969)
+++..+.....+..|...+....|+| ++.|+.++.+ ..|++||+.+++........+....++|+| +++.|+.++
T Consensus 188 i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~ 266 (429)
T PRK01742 188 VADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFAS 266 (429)
T ss_pred EECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEE
Confidence 34444544556778888999999999 7788877654 469999999887544433334455789999 888887764
Q ss_pred -CCCeEE--EEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 615 -LDAKVR--IWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 615 -~Dg~I~--IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
.+|.+. +||+.++....+..+...+....|+|||+.|+..+ .+|...||++........ . + .+.. .
T Consensus 267 ~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-~--l-----~~~~--~ 336 (429)
T PRK01742 267 SKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-L--V-----GGRG--Y 336 (429)
T ss_pred ecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-E--e-----cCCC--C
Confidence 677655 55777777777777777788999999999877655 578888887754321111 0 0 1111 3
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
...|+|++ ..|+.++.+ .+.+||............ .....+.|+|||++|+.++.++.+.+|.+.
T Consensus 337 ~~~~SpDG-~~ia~~~~~-~i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 337 SAQISADG-KTLVMINGD-NVVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CccCCCCC-CEEEEEcCC-CEEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 57899998 566666665 466689765432211111 123467899999999999999999888864
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.4e-10 Score=134.72 Aligned_cols=220 Identities=15% Similarity=0.158 Sum_probs=159.2
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCC-------cEEEEee-cCCCeEEEEEe
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETK-------SCLKLFA-HNDYVTCIQFN 603 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~-------~~i~~~~-h~~~V~sv~fs 603 (969)
..+...|...+..+..+..|...|..++.++ +.+|+|||.||+|++||...- ++..++. ....+.++.+.
T Consensus 1028 ~~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1028 GSPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec
Confidence 3444567778888889999999999999987 489999999999999998642 2333443 67889999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceE-------EEEec-C-CCC-EEEEEEccC-CC-EEEEEeCCCcEEEEEcCCCcee
Q 002086 604 PMDDDYFISGSLDAKVRIWSISDRLV-------VDWTD-L-HEM-VTAACYTPD-GQ-NALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 604 p~~~~~L~sgs~Dg~I~IWDl~~~~~-------~~~~~-~-~~~-V~sv~fspd-g~-~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
+ .++.+++++.||.|++.++..... ..... + .+. |..-+|... +. .++.+...+.|..||++.....
T Consensus 1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred c-CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence 8 899999999999999999875211 11111 1 122 333344332 23 6778899999999999876543
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe-ecCCCCeEEEEEeCC---CCEEEEE
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG-FRNTSSQISAAFNAD---GKYIISA 747 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspd---g~~LaSg 747 (969)
...+ .....+-|++++.+|.+ .++++|+..|.+.+||++=....... +.+...+..+..+|- ....+++
T Consensus 1187 w~lk------~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1187 WRLK------NQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred Hhhh------cCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence 3222 24456889999999988 79999999999999997643333322 344567777777663 3455555
Q ss_pred e--CCCcEEEEEcCCC
Q 002086 748 S--EDSQVYVWKREEH 761 (969)
Q Consensus 748 s--~Dg~I~IWdl~t~ 761 (969)
+ ..+.|-+|++.++
T Consensus 1260 ~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cccCCCceeeeecccC
Confidence 4 4678999999985
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=135.17 Aligned_cols=231 Identities=13% Similarity=0.177 Sum_probs=183.4
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 452 GSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
-.-+.+.++.+|++|+.||.-|.|-.+|+.++.+...+.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----------------------------------------- 168 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----------------------------------------- 168 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-----------------------------------------
Confidence 345678999999999999999999999999887765321
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~ 611 (969)
-...|.++.|..+..+++......++|||-. |..+..+.....|..+.|.| ..-+|+
T Consensus 169 ---------------------v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~v~rLeFLP-yHfLL~ 225 (545)
T KOG1272|consen 169 ---------------------VMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIRVARLEFLP-YHFLLV 225 (545)
T ss_pred ---------------------hhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCchhhhcccc-hhheee
Confidence 1245677888776666666777889999965 55566666677899999999 788889
Q ss_pred EEECCCeEEEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 612 SGSLDAKVRIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
+++..|.++.-|+.+|+++..+. ..+.+..++-+|-+..+-+|...|+|.+|.....+.+. +...|.++|.
T Consensus 226 ~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv--------KiLcH~g~V~ 297 (545)
T KOG1272|consen 226 AASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV--------KILCHRGPVS 297 (545)
T ss_pred ecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH--------HHHhcCCCcc
Confidence 99999999999999998876444 45778889999998899999999999999987766432 2367999999
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
+|++.++| .++++++.|..++|||++........+. ......++||..| |++.+....|.||.=
T Consensus 298 siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 298 SIAVDRGG-RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred eEEECCCC-cEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehh
Confidence 99999988 8999999999999999888765544443 4556778888765 344444558999963
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.2e-10 Score=128.86 Aligned_cols=218 Identities=13% Similarity=0.073 Sum_probs=146.5
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeC---CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGE---DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~---DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
.+..+...+.+.+|||||+.|+..+. +..|.+|++.+++.....
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--------------------------------- 239 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--------------------------------- 239 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc---------------------------------
Confidence 35557788999999999998886542 457889998776543210
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEE-eCCC--cEEEEECCCCcEEEEeecCCCeE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSS-SMDK--TVRLWDMETKSCLKLFAHNDYVT 598 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sg-s~Dg--tV~IWDl~t~~~i~~~~h~~~V~ 598 (969)
.+.+| +..+.|+| ++.|+.. +.+| .|++||+.+++......+...+.
T Consensus 240 --------------------------~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~ 290 (429)
T PRK03629 240 --------------------------SFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNT 290 (429)
T ss_pred --------------------------CCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcC
Confidence 11122 23578999 6666644 4455 59999999998877666666788
Q ss_pred EEEEecCCCCEEEEEECC-C--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceee
Q 002086 599 CIQFNPMDDDYFISGSLD-A--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK---GSCRLYSIEDSKLHQ 672 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~D-g--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d---g~I~IwDl~~~~~~~ 672 (969)
...|+| +++.|+..+.+ + .|+++|+.++....+...........|+|+|++|+..+.+ ..|.+||+.++....
T Consensus 291 ~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 291 EPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred ceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 999999 89988777654 3 4556677777665555444556778999999999876543 358889998876432
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc---EEEEeCCc-ceEEEEeecCCCCeEEEEEeC
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR---IRILDGLD-IVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~---I~IwD~~~-~~~~~~~~~~~~~V~sl~fsp 739 (969)
.. . ........|+|++ ..|+.++.++. +++++... ....+. .+...+...+|+|
T Consensus 370 Lt--------~--~~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~G~~~~~l~--~~~~~~~~p~Wsp 427 (429)
T PRK03629 370 LT--------D--TFLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTDGRFKARLP--ATDGQVKFPAWSP 427 (429)
T ss_pred eC--------C--CCCCCCceECCCC-CEEEEEEcCCCceEEEEEECCCCCeEECc--cCCCCcCCcccCC
Confidence 21 0 1122356799998 66777766654 66677532 223333 3445667778876
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-10 Score=121.86 Aligned_cols=203 Identities=11% Similarity=0.061 Sum_probs=155.5
Q ss_pred cCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc----EEEEeecCCCeEEEEEecCCCCEEEEEECC--CeEEEEeCC
Q 002086 552 GHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS----CLKLFAHNDYVTCIQFNPMDDDYFISGSLD--AKVRIWSIS 625 (969)
Q Consensus 552 gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~----~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D--g~I~IWDl~ 625 (969)
..++.|..+... +..|++|-.+|.+.+|....+. .+..+.....+..|.-++.....+++|+.. ..+.|||+.
T Consensus 103 l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 103 LGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 345566666655 4788999999999999998443 233334557777788787666777889998 889999998
Q ss_pred CceEEEE--------ec--CCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE
Q 002086 626 DRLVVDW--------TD--LHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 626 ~~~~~~~--------~~--~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
..+.+.. ++ ..-+++.+.|-+. ...|++++.-+.+++||.+.+.. ++..+ .....+|+++.
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-PV~~f------d~~E~~is~~~ 254 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-PVAQF------DFLENPISSTG 254 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-ceeEe------ccccCcceeee
Confidence 8743321 11 1134788999987 88999999999999999996543 22222 34478899999
Q ss_pred EcCCCCceEEEEeCCCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 694 FSPSNPSEVLVTSADSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
..|.+ .++++|..-+.+..||.+....... .....+.|.++..+|.+++|++++-|..|+|+|+++.+.
T Consensus 255 l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 255 LTPSG-NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ecCCC-cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 99988 8999999999999999887554433 234467799999999999999999999999999998443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-09 Score=126.88 Aligned_cols=207 Identities=12% Similarity=0.103 Sum_probs=141.7
Q ss_pred eecCCCceeEeccCCCCEEEEEecC-CcEEEEEe---CCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEE-E
Q 002086 540 FSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS---MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISG-S 614 (969)
Q Consensus 540 ~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs---~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sg-s 614 (969)
++..+.....+..+...+...+|+| ++.|+..+ .+..|.+||+.+++........+.+..+.|+| ++..|+.. +
T Consensus 184 ~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~ 262 (429)
T PRK03629 184 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALS 262 (429)
T ss_pred EcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEc
Confidence 3334444455666777899999999 67777654 34579999999987666555555566789999 88877754 4
Q ss_pred CCC--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC-C--cEEEEEcCCCceeeeeeeeecccccCCCCCe
Q 002086 615 LDA--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK-G--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI 689 (969)
Q Consensus 615 ~Dg--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d-g--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I 689 (969)
.+| .|++||+.++.+..+......+....|+|+|+.|+..+.+ + .|+++|+.++..... .......
T Consensus 263 ~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l---------t~~~~~~ 333 (429)
T PRK03629 263 KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI---------TWEGSQN 333 (429)
T ss_pred CCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe---------ecCCCCc
Confidence 455 5999999998887777666678899999999998877654 4 455556666543221 1122345
Q ss_pred EEEEEcCCCCceEEEEe-CC--CcEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc---EEEEEcCC
Q 002086 690 TGFQFSPSNPSEVLVTS-AD--SRIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKYIISASEDSQ---VYVWKREE 760 (969)
Q Consensus 690 t~l~fspd~~~~l~sgs-~D--g~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~---I~IWdl~t 760 (969)
....|+|++ ..|+..+ .+ ..|++||..... ..+.. ........|+|||++|+.++.++. +++++++.
T Consensus 334 ~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 334 QDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGGVQVLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred cCEEECCCC-CEEEEEEccCCCceEEEEECCCCCeEEeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 578899999 4555543 33 358888865432 22221 122346789999999999998765 67777753
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-09 Score=118.69 Aligned_cols=263 Identities=17% Similarity=0.179 Sum_probs=165.0
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+.|..+.+.+.++..+...-..+.|+|||+++++++.||.|.++|+.+++.+.....
T Consensus 20 viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----------------------- 76 (369)
T PF02239_consen 20 VIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----------------------- 76 (369)
T ss_dssp EEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------------------------
T ss_pred EEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----------------------
Confidence 346667777888876655455688999999999999999999999999887764321
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECCCCcEEEEee
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-MDKTVRLWDMETKSCLKLFA 592 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~t~~~i~~~~ 592 (969)
.....++++++ +++++++. ..+.|.++|.++.+.++.+.
T Consensus 77 ---------------------------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 77 ---------------------------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp ---------------------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred ---------------------------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 12346789998 77777665 68999999999999998772
Q ss_pred --------cCCCeEEEEEecCCCCEEEEEEC-CCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEE-eCCCcE
Q 002086 593 --------HNDYVTCIQFNPMDDDYFISGSL-DAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIG-SHKGSC 660 (969)
Q Consensus 593 --------h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasg-s~dg~I 660 (969)
....+.+|..+| ....++..-. -+.|.+.|..... ...............|+|++++++++ ...+.|
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp --EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred cccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence 234678888888 5665555544 4889888987654 33455566778899999999988775 456688
Q ss_pred EEEEcCCCceeeeeeee-----------------------------------------------ecccccCCCCCeEEEE
Q 002086 661 RLYSIEDSKLHQLNQVD-----------------------------------------------FQTKKKSSTRKITGFQ 693 (969)
Q Consensus 661 ~IwDl~~~~~~~~~~~~-----------------------------------------------~~~~~~~h~~~It~l~ 693 (969)
-++|..+++........ ..........+ .-+.
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~ 275 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK 275 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE
T ss_pred EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceee
Confidence 88888877654321100 00001111222 4567
Q ss_pred EcCCCCceEEEE----eCCCcEEEEeCCcceEEEEeec-CCCCeEEEEEeCCCCEEEEEeCCC--cEEEEEcCCCC
Q 002086 694 FSPSNPSEVLVT----SADSRIRILDGLDIVHKFRGFR-NTSSQISAAFNADGKYIISASEDS--QVYVWKREEHR 762 (969)
Q Consensus 694 fspd~~~~l~sg----s~Dg~I~IwD~~~~~~~~~~~~-~~~~V~sl~fspdg~~LaSgs~Dg--~I~IWdl~t~~ 762 (969)
.+|++ .++.+. .....|.++|..+......... ....+..+.|++||+++..+..++ .|.|||..+.+
T Consensus 276 thP~s-~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 276 THPDS-RYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp --TT--SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred cCCCC-ccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 78888 566665 4568899999887744333221 222488999999999877665543 69999999843
|
... |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-09 Score=127.79 Aligned_cols=219 Identities=17% Similarity=0.136 Sum_probs=144.3
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCC---CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGED---RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~D---gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+..|...|.+.+|+|||+.|+.++.+ ..|.+||+.+++....
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l--------------------------------- 243 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV--------------------------------- 243 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe---------------------------------
Confidence 4466788899999999999999987743 4699999887654321
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCC--cEEEEECCCCcEEEEeecCCCe
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDK--TVRLWDMETKSCLKLFAHNDYV 597 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~Dg--tV~IWDl~t~~~i~~~~h~~~V 597 (969)
..+.+...+..|+| ++.| ++.+.+| .|++||+.+++......+....
T Consensus 244 -----------------------------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~ 294 (433)
T PRK04922 244 -----------------------------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGID 294 (433)
T ss_pred -----------------------------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCc
Confidence 11122234678998 5555 4556665 5999999999877666666666
Q ss_pred EEEEEecCCCCEEEEEEC-CCe--EEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSL-DAK--VRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG---SCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~-Dg~--I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg---~I~IwDl~~~~~~ 671 (969)
...+|+| ++.+|+.++. +|. |+++|+.+++...+..........+|+|+|++|+..+.++ .|.+||+.+++..
T Consensus 295 ~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 295 TEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred cceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 7889999 8888887764 444 7777887776655443344455789999999998765443 6999999887653
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC---CCcEEEEeCCcce-EEEEeecCCCCeEEEEEeC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA---DSRIRILDGLDIV-HKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~---Dg~I~IwD~~~~~-~~~~~~~~~~~V~sl~fsp 739 (969)
... +........|+|++ ..++..+. ...|++++..... ..+. .+.+.+...+|+|
T Consensus 374 ~Lt----------~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~~~~~l~--~~~g~~~~p~wsp 432 (433)
T PRK04922 374 TLT----------PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDGRVRQRLV--SADGEVREPAWSP 432 (433)
T ss_pred ECC----------CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCCceEEcc--cCCCCCCCCccCC
Confidence 211 11123456899998 45444443 2357777764322 2222 2234455566665
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-09 Score=125.99 Aligned_cols=206 Identities=15% Similarity=0.155 Sum_probs=145.3
Q ss_pred cCCCceeEeccCCCCEEEEEecC-CcEEEEEeC---CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEECC
Q 002086 542 LSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM---DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSLD 616 (969)
Q Consensus 542 ~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~---DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~D 616 (969)
..+.....+..|...+....|+| ++.|+..+. +..|.+||+.+++......+.+.+.+..|+| ++..|+ +.+.+
T Consensus 189 ~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~ 267 (435)
T PRK05137 189 QDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQG 267 (435)
T ss_pred CCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecC
Confidence 34455556778888999999999 777777653 4689999999998766666777888999999 887765 55555
Q ss_pred Ce--EEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEE
Q 002086 617 AK--VRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691 (969)
Q Consensus 617 g~--I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~ 691 (969)
+. |++||+.++.+..+..+........|+|||+.|+..+. +| .|++||+.++...... .....+..
T Consensus 268 g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---------~~~~~~~~ 338 (435)
T PRK05137 268 GNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS---------FGGGRYST 338 (435)
T ss_pred CCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee---------cCCCcccC
Confidence 55 88889999888777766666778999999999887764 33 6888888776543221 12344566
Q ss_pred EEEcCCCCceEEEEeCC---CcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC------CcEEEEEcCC
Q 002086 692 FQFSPSNPSEVLVTSAD---SRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED------SQVYVWKREE 760 (969)
Q Consensus 692 l~fspd~~~~l~sgs~D---g~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D------g~I~IWdl~t 760 (969)
..|+|++ ..|+....+ ..|.+||......... .....+....|+|||++|+..+.+ ..|+++++..
T Consensus 339 ~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~~~l--t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 339 PVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGERIL--TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred eEECCCC-CEEEEEEcCCCceEEEEEECCCCceEec--cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 8899999 555554433 3588888643222111 112235678999999998776543 2577777764
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-09 Score=115.81 Aligned_cols=300 Identities=17% Similarity=0.234 Sum_probs=177.0
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
+-.+..++|++.-..+|.+..|-+|++||-...............+..+.+.+........+......... ....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~-----~s~t 172 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWS-----DSRT 172 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEE-----cCcc
Confidence 34567889998666789999999999999765322211111122223333333222111111111100000 0000
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC-CCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCC
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-DKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDD 607 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~ 607 (969)
.....+........-.+....|| ..|+.+.|.+ +..+++++. |..|+|||..++.++... ..-+.++-+.|+| ++
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dg 250 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DG 250 (445)
T ss_pred cccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CC
Confidence 00000000000111122234566 7899999998 788888875 678999999999988877 5667889999999 99
Q ss_pred CEEEEEECCCeEEEEeCCC-ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce----e-------eeee
Q 002086 608 DYFISGSLDAKVRIWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL----H-------QLNQ 675 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~-~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~----~-------~~~~ 675 (969)
++|+++.-|+..++|.... -....+.-..+.|...+|+|.|.+|+..+. |.-++|.+.-... . ....
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeee
Confidence 9999999999999996543 344455555668999999999998876553 3334454421110 0 0011
Q ss_pred eeec-----ccccCCCCCeEEEEEcCCCCceEEEEeCCCc--------EEEEeCCcce---EEEEeecCCCCeEEEEEeC
Q 002086 676 VDFQ-----TKKKSSTRKITGFQFSPSNPSEVLVTSADSR--------IRILDGLDIV---HKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 676 ~~~~-----~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~--------I~IwD~~~~~---~~~~~~~~~~~V~sl~fsp 739 (969)
.++. .....-.+.+.+++|.|.| .++++.-..+. |.+||..+.. ..+.+......-..++|+|
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~p 408 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGP 408 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeee
Confidence 1111 1112235788999999998 67777644333 6678865422 1222332222234566766
Q ss_pred ---CCCEEEEEeCCCcEEEEEcC
Q 002086 740 ---DGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 740 ---dg~~LaSgs~Dg~I~IWdl~ 759 (969)
+|.+|..+=..|.|.-|++.
T Consensus 409 l~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 409 LKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccCCcEEEEEeccCceEeeeeE
Confidence 67788888788888888775
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-09 Score=125.25 Aligned_cols=207 Identities=15% Similarity=0.201 Sum_probs=141.8
Q ss_pred ecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC---CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEEC
Q 002086 541 SLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSL 615 (969)
Q Consensus 541 ~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~ 615 (969)
+..+.....+..|...+....|+| ++.|+..+.+ ..|.+||+.+++......+.+...+..|+| ++..|+ +.+.
T Consensus 190 D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~ 268 (433)
T PRK04922 190 DSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSR 268 (433)
T ss_pred CCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeC
Confidence 334444456667778899999999 7788877643 469999999988766655566667889999 887665 5555
Q ss_pred CC--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CCc--EEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 616 DA--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KGS--CRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 616 Dg--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg~--I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
+| .|++||+.++++..+..+.......+|+|+|+.|+..+. +|. |+++++.+++..... .......
T Consensus 269 ~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt---------~~g~~~~ 339 (433)
T PRK04922 269 DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT---------FQGNYNA 339 (433)
T ss_pred CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee---------cCCCCcc
Confidence 55 599999999887776666555678899999999887764 444 666777666543211 1122344
Q ss_pred EEEEcCCCCceEEEEeCC-C--cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCC
Q 002086 691 GFQFSPSNPSEVLVTSAD-S--RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED---SQVYVWKREE 760 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~D-g--~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D---g~I~IWdl~t 760 (969)
..+|+|++ ..|+..+.+ + .|++||........- .+........|+|||++|+..+.+ +.|+++++..
T Consensus 340 ~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~~~L--t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 340 RASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGSVRTL--TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CEEECCCC-CEEEEEECCCCceeEEEEECCCCCeEEC--CCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 68999998 555554433 2 599999654332211 122234467899999988877653 3577787754
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-09 Score=125.99 Aligned_cols=221 Identities=10% Similarity=0.074 Sum_probs=148.5
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeC---CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGE---DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~---DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+.+..|.+.|.+.+|+|||+.|+..+. +..|.+||+.+++...
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------------------- 240 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------------------- 240 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---------------------------------
Confidence 3456678899999999999999888764 4689999998765422
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCc--EEEEECCCCcEEEEeecCCC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKT--VRLWDMETKSCLKLFAHNDY 596 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~Dgt--V~IWDl~t~~~i~~~~h~~~ 596 (969)
+..+.+.+....|+| ++.| ++.+.++. |.+||+.+++......+...
T Consensus 241 -----------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~ 291 (435)
T PRK05137 241 -----------------------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAI 291 (435)
T ss_pred -----------------------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCc
Confidence 122334556788999 6555 45666655 77889999887766666667
Q ss_pred eEEEEEecCCCCEEEEEEC-CC--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCce
Q 002086 597 VTCIQFNPMDDDYFISGSL-DA--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK---GSCRLYSIEDSKL 670 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~-Dg--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d---g~I~IwDl~~~~~ 670 (969)
.....|+| ++..|+..+. +| .|++||+.++....+......+....|+|+|+.|+....+ ..|.+||+.++..
T Consensus 292 ~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 292 DTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE 370 (435)
T ss_pred cCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 78899999 8888887764 33 6888998887776665555567778999999999876643 3688888865543
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-----CcEEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-----SRIRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-----g~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
... . ....+....|+|++..+++++... ..|+++|........ ......+...+|+|
T Consensus 371 ~~l---------t-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~--l~~~~~~~~p~Wsp 432 (435)
T PRK05137 371 RIL---------T-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNERE--VPTPGDASDPAWSP 432 (435)
T ss_pred Eec---------c-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEE--ccCCCCccCcccCC
Confidence 211 0 112356788999984444444333 257777754322211 11223345556665
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.5e-11 Score=123.59 Aligned_cols=347 Identities=15% Similarity=0.186 Sum_probs=209.3
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccc
Q 002086 456 TIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHV 535 (969)
Q Consensus 456 ~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 535 (969)
-++|||+|+|+|+++.- .+.|-|..+.++.+.+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~--------------------------------------------- 46 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL--------------------------------------------- 46 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH---------------------------------------------
Confidence 46899999999999866 67788877655433111
Q ss_pred cceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCC-CEEE
Q 002086 536 PETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDD-DYFI 611 (969)
Q Consensus 536 ~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~-~~L~ 611 (969)
--+.|.-+.|.. -..|.....|+.|.+|++...+-...+ ....++.++.|+| ++ ..|.
T Consensus 47 -----------------cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~ 108 (447)
T KOG4497|consen 47 -----------------CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILL 108 (447)
T ss_pred -----------------HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEee
Confidence 123344456654 245566678999999999988877666 5678899999999 77 5566
Q ss_pred EEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEE
Q 002086 612 SGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~ 691 (969)
+...|-.|.+|.+.+............+..++|+|+|++.+..+.-.....+.+...+ ...+........-..++
T Consensus 109 tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~-----~W~ll~~f~~dT~Dltg 183 (447)
T KOG4497|consen 109 TSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK-----AWILLKEFKLDTIDLTG 183 (447)
T ss_pred eecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH-----HHHHHHhcCCCcccccC
Confidence 7778899999999999888777777778999999999999988765332222222111 01111222445566789
Q ss_pred EEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCC-----
Q 002086 692 FQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAST----- 766 (969)
Q Consensus 692 l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t----- 766 (969)
+.|+|+| .. +.+||.--....+ .......+..++|+|.+++|+.|+.|+.++|-+--+-+....
T Consensus 184 ieWsPdg-~~---------laVwd~~Leykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~ 252 (447)
T KOG4497|consen 184 IEWSPDG-NW---------LAVWDNVLEYKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLC 252 (447)
T ss_pred ceECCCC-cE---------EEEecchhhheee-eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccch
Confidence 9999987 33 4467732111111 222334578899999999999999999998865433111000
Q ss_pred -Cc-e--eEEecccCC----ceeeeeeEEeecCCCcccCC---------CCCccEEEccccc---ccCCCCcccccCCCC
Q 002086 767 -GK-R--AIITTRNHE----HFQCKDVSVAIPWPGMVKGE---------PPPTPVQTKKHAK---RISSNPTSATSSPTK 826 (969)
Q Consensus 767 -~k-~--~~~~~~~~~----~~~~~~~s~~~~w~~~i~G~---------~~~~~v~~~~~~~---~~~~~~~~~~~SP~~ 826 (969)
-. + ..+.....+ ...|.. +..+.-.+..+. ...+.+..++... .+.......++|+++
T Consensus 253 s~~dp~~~~~~ke~~~~~ql~~~cLs--f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds 330 (447)
T KOG4497|consen 253 SYHDPTLHLLEKETFSIVQLLHHCLS--FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS 330 (447)
T ss_pred hccCchhhhhhhhhcchhhhcccccc--cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc
Confidence 00 0 000000000 011211 111111111111 1122222222111 011112355789999
Q ss_pred CCccccCCCC--ccccCCCCCCccccCCCCCCCCccccccCCCCCCccccCCCccccCCCC
Q 002086 827 EGSPAGHSRR--LLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSNSSSIRSGDSP 885 (969)
Q Consensus 827 ~~i~~~~~~~--~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s~~~~r~~~~~ 885 (969)
.++++..... .|..|.....++...+ .-.+++.+.-|||+-+..+...-.+.=|=++|
T Consensus 331 ~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 331 TYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred eEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 8888765544 6778888777777765 34457778889999887776643223344444
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9e-10 Score=117.86 Aligned_cols=194 Identities=18% Similarity=0.286 Sum_probs=145.9
Q ss_pred CCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc---
Q 002086 554 LDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--- 627 (969)
Q Consensus 554 ~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--- 627 (969)
+..+..++|++ -..++++..|-.|++||-.. .+...+ .....|+|++|-|.....|+.|+..| |.||.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34677899998 56788999999999999887 444444 34578999999997777888887755 999987421
Q ss_pred ------------eEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE
Q 002086 628 ------------LVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF 694 (969)
Q Consensus 628 ------------~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f 694 (969)
++.... .+..|+++.|.+||..+++++ .+..|.|||..++...... ....+.++-+.|
T Consensus 176 ~r~~~~~s~~~~qvl~~p-gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~--------~~glgg~slLkw 246 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDP-GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI--------PKGLGGFSLLKW 246 (445)
T ss_pred ccccccccccchhheeCC-CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc--------ccCCCceeeEEE
Confidence 111222 236799999999999999877 4679999999998875542 245677899999
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 695 SPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 695 spd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+||+ .+|+++.-|+..++|...+.....+.....+.|...+|+|+|++|+-... |.-.+|.+.-
T Consensus 247 SPdg-d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f 310 (445)
T KOG2139|consen 247 SPDG-DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTF 310 (445)
T ss_pred cCCC-CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEee
Confidence 9999 79999999999999975544444444445668999999999988765553 3445555543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-09 Score=125.48 Aligned_cols=176 Identities=17% Similarity=0.221 Sum_probs=118.1
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC---CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCE
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD---AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQN 650 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D---g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~ 650 (969)
...|.+||...........+...+.+.+|+| +++.|+..+.+ ..|++||+.+++...+......+....|+|||+.
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 3468888886555555567888999999999 89888877643 3599999999887666655666778999999998
Q ss_pred EEE-EeCCCcEEEEE--cCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe--CCcc-eEEEE
Q 002086 651 ALI-GSHKGSCRLYS--IEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDI-VHKFR 724 (969)
Q Consensus 651 Las-gs~dg~I~IwD--l~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD--~~~~-~~~~~ 724 (969)
|+. .+.+|...||. +.++..... ..+........|+|++..+++++..++...||. .... ...+.
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~l---------t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRRL---------TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEEC---------CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 874 56777766665 444432211 223334566789999844444444455655654 3322 22222
Q ss_pred eecCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcCCC
Q 002086 725 GFRNTSSQISAAFNADGKYIISASEDS---QVYVWKREEH 761 (969)
Q Consensus 725 ~~~~~~~V~sl~fspdg~~LaSgs~Dg---~I~IWdl~t~ 761 (969)
.. ........|+|||++|+..+.++ .|++||+.++
T Consensus 325 ~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 325 FT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred cC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 11 22334678999999998877654 5999999873
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-09 Score=122.21 Aligned_cols=220 Identities=15% Similarity=0.141 Sum_probs=137.2
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCC---CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGED---RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~D---gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+..|.+.|.+.+|+|||+.|+..+.+ ..|.+||+.+++....
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l--------------------------------- 235 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV--------------------------------- 235 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---------------------------------
Confidence 3455788899999999999999887643 3599999987754321
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE-EEeCCCcEEEE--ECCCCcEEEEeecCCCe
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL-SSSMDKTVRLW--DMETKSCLKLFAHNDYV 597 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~-Sgs~DgtV~IW--Dl~t~~~i~~~~h~~~V 597 (969)
....+.+.+..|+| ++.|+ +.+.++...|| |+.++.......+...+
T Consensus 236 -----------------------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~ 286 (427)
T PRK02889 236 -----------------------------ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGID 286 (427)
T ss_pred -----------------------------ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCC
Confidence 11122345788999 55655 56778876666 55556544444555566
Q ss_pred EEEEEecCCCCEEEEEEC-CCeEEEE--eCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSL-DAKVRIW--SISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG---SCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~-Dg~I~IW--Dl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg---~I~IwDl~~~~~~ 671 (969)
....|+| ++..|+..+. +|...|| ++.++................|+|+|++|+..+.++ .|.+||+.+++..
T Consensus 287 ~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 287 TEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred cCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 7789999 8988776654 4555555 445555443333333345678999999999877654 6999999887643
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc--EEEEeCCcc-eEEEEeecCCCCeEEEEEeC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR--IRILDGLDI-VHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~--I~IwD~~~~-~~~~~~~~~~~~V~sl~fsp 739 (969)
... . ........|+|++..++++....+. +++.+.... ...+. .+.+.+...+|+|
T Consensus 366 ~lt--------~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~--~~~g~~~~p~wsp 424 (427)
T PRK02889 366 ALT--------D--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS--VQGGDVREPSWGP 424 (427)
T ss_pred Ecc--------C--CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee--cCCCCCCCCccCC
Confidence 221 1 1123567899999544444444443 444444221 11221 2334455566665
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=122.41 Aligned_cols=101 Identities=23% Similarity=0.473 Sum_probs=89.4
Q ss_pred CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEE
Q 002086 545 KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIW 622 (969)
Q Consensus 545 k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IW 622 (969)
.|+..+.--.+.|..++|++ +++|++.+.||.+||+|+.+.+++..+ .--+...|++|+| |+.+|++|++|.-|.||
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVW 359 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEE
Confidence 45555655667999999999 899999999999999999998887776 4567899999999 99999999999999999
Q ss_pred eCCCceEEEE-ecCCCCEEEEEEcc
Q 002086 623 SISDRLVVDW-TDLHEMVTAACYTP 646 (969)
Q Consensus 623 Dl~~~~~~~~-~~~~~~V~sv~fsp 646 (969)
.+..++++.. .+|..+|..|+|.|
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEeccccccceeeEeecc
Confidence 9999887765 77889999999997
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-08 Score=119.96 Aligned_cols=119 Identities=26% Similarity=0.493 Sum_probs=101.6
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.+.||++.|..+.|+.||++++|+|.|.++|+|++++++...
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------------------------------- 211 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------------------------------- 211 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------------------------------------
Confidence 588999999999999999999999999999999999765432
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecC-CCeEEEEEec
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHN-DYVTCIQFNP 604 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~-~~V~sv~fsp 604 (969)
....+|+..|+.++|.+. .++|++.|-+.++|+....+.....+|. ..|+.++..+
T Consensus 212 ----------------------~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~ 268 (967)
T KOG0974|consen 212 ----------------------CTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI 268 (967)
T ss_pred ----------------------cccccccceeEEEEeccc-eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcC
Confidence 134589999999999997 9999999999999977654444222554 5799999998
Q ss_pred CCCCEEEEEECCCeEEEEeCCC
Q 002086 605 MDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
+...+++++.|+.+++||+..
T Consensus 269 -~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 269 -GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -CceEEEeeccCcchhhhhhhc
Confidence 888999999999999999854
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-09 Score=108.69 Aligned_cols=113 Identities=16% Similarity=0.391 Sum_probs=91.4
Q ss_pred CCCCEEEEEecC-CcEEEE--EeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC---CeEEEEeCCC
Q 002086 553 HLDDVLDLSWSR-SHLLLS--SSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD---AKVRIWSISD 626 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~S--gs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D---g~I~IWDl~~ 626 (969)
..++|.+++|+| ++.|++ |..++.|.+||++ ++.+..++ ...+..|.|+| ++++|++++.+ |.|.+||+++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 345799999999 666543 4577899999997 66666664 56788999999 99999998754 6799999999
Q ss_pred ceEEEEecCCCCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCc
Q 002086 627 RLVVDWTDLHEMVTAACYTPDGQNALIGSH------KGSCRLYSIEDSK 669 (969)
Q Consensus 627 ~~~~~~~~~~~~V~sv~fspdg~~Lasgs~------dg~I~IwDl~~~~ 669 (969)
.+.+....+.. ++.++|+|+|++|+++.. |..++||+.....
T Consensus 135 ~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 135 KKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred CEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 88887776654 789999999999998764 7889999986543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=113.89 Aligned_cols=259 Identities=19% Similarity=0.310 Sum_probs=169.7
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceE-----EEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEV-----MSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~-----l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
-.+-|.++.|...|.+||||..+|.|.++.-..... ...++.+..
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshep------------------------------ 73 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEP------------------------------ 73 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCc------------------------------
Confidence 356789999999999999999999999987542110 000000000
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc---------------
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS--------------- 586 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~--------------- 586 (969)
..++ + .-..-...|..+.|.+ ...++....|++|++|.+....
T Consensus 74 ----EFDY--------------L-kSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~ 134 (433)
T KOG1354|consen 74 ----EFDY--------------L-KSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPG 134 (433)
T ss_pred ----ccch--------------h-hhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCC
Confidence 0000 0 0011235678889986 4678889999999999875321
Q ss_pred --------------------EEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEecCC----
Q 002086 587 --------------------CLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTDLH---- 636 (969)
Q Consensus 587 --------------------~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~---- 636 (969)
+.+++ +|...|.+|.++. +...++++ .|-.|.+|.+.-. .++....+.
T Consensus 135 ~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeL 212 (433)
T KOG1354|consen 135 TITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEEL 212 (433)
T ss_pred ccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHH
Confidence 11122 5888899999997 77777776 5788999998532 234444333
Q ss_pred -CCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc--------cccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 637 -EMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT--------KKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 637 -~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~--------~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
.-|++..|+|. .+.|+-.+..|+|++.|++...+.....-.+.. ....-...|..+.|++.| .++++ -
T Consensus 213 teVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryils-R 290 (433)
T KOG1354|consen 213 TEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILS-R 290 (433)
T ss_pred HHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEE-e
Confidence 45899999996 567778899999999999955432111000000 011223568899999987 55554 3
Q ss_pred CCCcEEEEeCC---cceEEEEeecCC----------CC---eEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 707 ADSRIRILDGL---DIVHKFRGFRNT----------SS---QISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 707 ~Dg~I~IwD~~---~~~~~~~~~~~~----------~~---V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.--+|++||+. .....+..|... .. -..++|+-++.+++||+....+++|++..+
T Consensus 291 Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 291 DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 34689999963 334444443221 11 246889999999999999999999997663
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.2e-09 Score=107.84 Aligned_cols=148 Identities=14% Similarity=0.299 Sum_probs=100.4
Q ss_pred EEEEEecCCCCEEEEEEC----------CCeEEEEeC--CCceEEEE-ecCCCCEEEEEEccCCCEEEEE--eCCCcEEE
Q 002086 598 TCIQFNPMDDDYFISGSL----------DAKVRIWSI--SDRLVVDW-TDLHEMVTAACYTPDGQNALIG--SHKGSCRL 662 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~----------Dg~I~IWDl--~~~~~~~~-~~~~~~V~sv~fspdg~~Lasg--s~dg~I~I 662 (969)
..+.|++ .|++|+.-.. -+...+|.+ .......+ ....++|.+++|+|+|+.|++. ..+..|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3467777 6665554322 133445544 33333222 2234569999999999987654 45779999
Q ss_pred EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC---CCcEEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA---DSRIRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 663 wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~---Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
||++..... ......+..+.|+|+| .+|++++. .|.|.+||..+....... .+ ..++.++|+|
T Consensus 88 yd~~~~~i~-----------~~~~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~-~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKGKKIF-----------SFGTQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTF-EH-SDATDVEWSP 153 (194)
T ss_pred EcCcccEeE-----------eecCCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeecc-cc-CcEEEEEEcC
Confidence 999732221 1234567889999998 67777653 467999998865554333 23 3478999999
Q ss_pred CCCEEEEEeC------CCcEEEEEcCC
Q 002086 740 DGKYIISASE------DSQVYVWKREE 760 (969)
Q Consensus 740 dg~~LaSgs~------Dg~I~IWdl~t 760 (969)
||++|+++.. |+.++||++..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEecC
Confidence 9999999875 78899999963
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-08 Score=104.17 Aligned_cols=197 Identities=16% Similarity=0.226 Sum_probs=136.5
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECC-CCcEEEEee---cCCCeEEEEEecCCCCEEEE-EECCCeEEEEeCCCc
Q 002086 553 HLDDVLDLSWSRSHLLLSSSMDKTVRLWDME-TKSCLKLFA---HNDYVTCIQFNPMDDDYFIS-GSLDAKVRIWSISDR 627 (969)
Q Consensus 553 H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~-t~~~i~~~~---h~~~V~sv~fsp~~~~~L~s-gs~Dg~I~IWDl~~~ 627 (969)
...+|.+|.+.++..++. ..+.|.||... ..+.+..+. ....+.+++-+. +..+|+. |-.-|.|+|-|+...
T Consensus 93 f~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccceEEEEEhhhc
Confidence 457899999987544433 45789999988 455555552 223333333322 2333433 455689999999876
Q ss_pred eE---EEEecCCCCEEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 628 LV---VDWTDLHEMVTAACYTPDGQNALIGSHKGS-CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 628 ~~---~~~~~~~~~V~sv~fspdg~~Lasgs~dg~-I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
+. .....|...|.|++++-+|..+|+++..|+ |||||..++....... .......|.+++|+|+. .+|+
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A~iy~iaFSp~~-s~La 242 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRADIYCIAFSPNS-SWLA 242 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchheEEEEEeCCCc-cEEE
Confidence 55 778899999999999999999999999995 7999999998865532 24456789999999988 8999
Q ss_pred EEeCCCcEEEEeCCcce---E-------------E--------EEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 704 VTSADSRIRILDGLDIV---H-------------K--------FRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~~---~-------------~--------~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
+++..|+|.|+.+.... . + .+.+-..+...-++|-.+.+.++..+.||..+-+.+.
T Consensus 243 vsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 243 VSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred EEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 99999999999744211 0 0 0111123344456676665666666677876655554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.09 E-value=8e-07 Score=101.21 Aligned_cols=250 Identities=14% Similarity=0.191 Sum_probs=161.0
Q ss_pred ccCEEEEEEeCCCCEEEEEeC----CCcEEEEeccc--ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 451 EGSIWTIKFSLDARFLASAGE----DRVIHVWEVQE--CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~----DgtVrIWDl~t--g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
.....-|+++|++++|.++.. ++.|..|.+.. +++...
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~------------------------------------ 79 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL------------------------------------ 79 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE------------------------------------
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe------------------------------------
Confidence 445567889999999988877 56888888875 333221
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECCC-CcEEE---Eeec-----
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-MDKTVRLWDMET-KSCLK---LFAH----- 593 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~t-~~~i~---~~~h----- 593 (969)
............+++++ +.+|+++. .+|+|.++++.. +.... .+.|
T Consensus 80 -----------------------~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~ 136 (345)
T PF10282_consen 80 -----------------------NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGP 136 (345)
T ss_dssp -----------------------EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEES
T ss_pred -----------------------eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCC
Confidence 01111233445688888 77777776 589999999987 43332 2222
Q ss_pred ------CCCeEEEEEecCCCCEEEEEEC-CCeEEEEeCCCce--EEE----EecCCCCEEEEEEccCCCEEEEEe-CCCc
Q 002086 594 ------NDYVTCIQFNPMDDDYFISGSL-DAKVRIWSISDRL--VVD----WTDLHEMVTAACYTPDGQNALIGS-HKGS 659 (969)
Q Consensus 594 ------~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl~~~~--~~~----~~~~~~~V~sv~fspdg~~Lasgs-~dg~ 659 (969)
.....++.|+| +++++++... ...|.+|++.... +.. ..........++|+|+++++.+.. .++.
T Consensus 137 ~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~ 215 (345)
T PF10282_consen 137 NPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT 215 (345)
T ss_dssp STTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred cccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc
Confidence 24578999999 8887777543 4579999997654 322 234456789999999999887655 5778
Q ss_pred EEEEEcC--CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEe-ecCCCCeE
Q 002086 660 CRLYSIE--DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRG-FRNTSSQI 733 (969)
Q Consensus 660 I~IwDl~--~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~-~~~~~~V~ 733 (969)
|.+|++. .+.+.....+...............|+++|++..++++....+.|.+|++.. ....... ........
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr 295 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPR 295 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEE
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCcc
Confidence 9999998 5544333333222111122236889999999955555556778899999621 2222222 22234468
Q ss_pred EEEEeCCCCEEEEEeC-CCcEEEEEcCC
Q 002086 734 SAAFNADGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 734 sl~fspdg~~LaSgs~-Dg~I~IWdl~t 760 (969)
.+.|+|+|++|+++.. ++.|.+|+++.
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 8999999999998875 56899998853
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-09 Score=113.12 Aligned_cols=343 Identities=13% Similarity=0.185 Sum_probs=195.1
Q ss_pred hhhccCCCcceeeeecccccccccCCCCcccccccccc-cccccccccccccceeeeeEEEeeecCCccccCCCCcccch
Q 002086 331 FEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSK-SLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQ 409 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~-~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~ 409 (969)
+..+.||.+.|++........-+.+.++|.++..|+-+ ...+|.. +.+.....+ .++.+..+...++-+...
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps--I~~~mP~~~--~~~~y~~e~~~L~vg~~n--- 89 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS--IYHYMPSPC--SAMEYVSESRRLYVGQDN--- 89 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch--hhhhCCCCc--eEeeeeccceEEEEEEec---
Confidence 56778999999999854444445566788888777522 1112211 111111111 111111122111111000
Q ss_pred HHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEee
Q 002086 410 REQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMS 489 (969)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~ 489 (969)
+....+. --.++..+...+....|...|..+-|+...+++++.+.|..+.---.+.+..+..+
T Consensus 90 ----------gtvtefs-------~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y 152 (404)
T KOG1409|consen 90 ----------GTVTEFA-------LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY 152 (404)
T ss_pred ----------ceEEEEE-------hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce
Confidence 0000010 01144455566677899999999999999999999999987643333333222110
Q ss_pred cCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEE
Q 002086 490 EGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLL 569 (969)
Q Consensus 490 ~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~ 569 (969)
... +.... ..+.+. ......|.+.|+.+.+-+
T Consensus 153 ~~~--------~~~t~--------------------------------~~~d~~---~~fvGd~~gqvt~lr~~~----- 184 (404)
T KOG1409|consen 153 NFE--------TPASA--------------------------------LQFDAL---YAFVGDHSGQITMLKLEQ----- 184 (404)
T ss_pred Eee--------ccCCC--------------------------------CceeeE---EEEecccccceEEEEEee-----
Confidence 000 00000 000000 112233555555555433
Q ss_pred EEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC--ceEEEEecCCCCEEEEEEcc
Q 002086 570 SSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD--RLVVDWTDLHEMVTAACYTP 646 (969)
Q Consensus 570 Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~--~~~~~~~~~~~~V~sv~fsp 646 (969)
..-..+..+ +|.+.+++++|.+ ....|++|..|..|.+||+-. +.....++|.+.|..+.+.+
T Consensus 185 -------------~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 185 -------------NGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred -------------cCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 122233334 8999999999999 889999999999999999954 56677888999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeee-------------------------ecccccCCCCCeEEEEEcCCCCce
Q 002086 647 DGQNALIGSHKGSCRLYSIEDSKLHQLNQVD-------------------------FQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 647 dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~-------------------------~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
.-+.+++++.||.|.+|++.........-.. +..+.-.+.+...+...+. +...
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s-~~~~ 329 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS-NRSS 329 (404)
T ss_pred hheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc-Cccc
Confidence 8899999999999999999755432110000 0000000111111111111 1123
Q ss_pred EEEEeCCCcEEEEeCC-------cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 702 VLVTSADSRIRILDGL-------DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~-------~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+.+-+..-.+|+-|.- +.......|.-...|+.+.+..+-.+|+|++.|..|+|||+..
T Consensus 330 ~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 330 YPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 3333444455655511 1111223345556789999988889999999999999999975
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-08 Score=117.26 Aligned_cols=203 Identities=16% Similarity=0.223 Sum_probs=140.3
Q ss_pred CCceeEeccCCCCEEEEEecC-CcEEEEEeCC---CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEECCC-
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSLDA- 617 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~Dg- 617 (969)
+.....+..+...+....|+| +++|+.++.+ ..|++||+.+++......+...+.+++|+| +++.|+ +.+.++
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~ 257 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGN 257 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCC
Confidence 344455666777899999999 7788777654 479999999988776666777778899999 887665 444444
Q ss_pred -eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC-C--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE
Q 002086 618 -KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK-G--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 618 -~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d-g--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
.|++||+.++....+..+........|+|+|+.|+..+.. + .|+++|+.+++.... ..+...+..+.
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l---------~~~~~~~~~~~ 328 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL---------TFRGGYNASPS 328 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe---------ecCCCCccCeE
Confidence 5999999988776666655555678999999988876543 3 578888877654321 12334567788
Q ss_pred EcCCCCceEEEEeCCC---cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcC
Q 002086 694 FSPSNPSEVLVTSADS---RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDS---QVYVWKRE 759 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg---~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg---~I~IWdl~ 759 (969)
|+|++ .+++.++.++ .|.+||.......... .........|+|||++|+..+.++ .+++.+..
T Consensus 329 ~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 329 WSPDG-DLIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred ECCCC-CEEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 99998 6677666665 7888886653222111 112234568999999988877764 34454443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-08 Score=117.71 Aligned_cols=190 Identities=17% Similarity=0.135 Sum_probs=132.4
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCC---CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGED---RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~D---gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+..|...+...+|+|||++|+.+..+ ..|++||+.+++...
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---------------------------------- 228 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---------------------------------- 228 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----------------------------------
Confidence 4455677789999999999999887654 479999988764432
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE-EEeCCC--cEEEEECCCCcEEEEeecCCCe
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL-SSSMDK--TVRLWDMETKSCLKLFAHNDYV 597 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~-Sgs~Dg--tV~IWDl~t~~~i~~~~h~~~V 597 (969)
+..+.+.+.++.|+| ++.|+ +.+.++ .|++||+.+++......+....
T Consensus 229 ----------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 280 (417)
T TIGR02800 229 ----------------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGID 280 (417)
T ss_pred ----------------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCC
Confidence 111233445678998 55554 455444 5999999988776666665566
Q ss_pred EEEEEecCCCCEEEEEECC-C--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSLD-A--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG---SCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~D-g--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg---~I~IwDl~~~~~~ 671 (969)
....|+| ++..|+.++.. + .|+++|+.+++...+......+..+.|+|+|++|+.+..++ .|.+||+.++...
T Consensus 281 ~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 281 TEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER 359 (417)
T ss_pred CCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence 6789999 88888766543 3 58888988887766665666678889999999999888776 7899998875432
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
... .........|+|++ ..|+..+.+
T Consensus 360 ~l~----------~~~~~~~p~~spdg-~~l~~~~~~ 385 (417)
T TIGR02800 360 VLT----------DTGLDESPSFAPNG-RMILYATTR 385 (417)
T ss_pred Ecc----------CCCCCCCceECCCC-CEEEEEEeC
Confidence 211 01123345799998 455555443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-08 Score=111.18 Aligned_cols=204 Identities=17% Similarity=0.245 Sum_probs=153.7
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
...-++.|-.++.. || .|++|-.+|.+.+|....+....
T Consensus 101 ~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hs--------------------------------------- 139 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHS--------------------------------------- 139 (412)
T ss_pred cccccccccchhhc-CC-EEEEEecCCcEEEEeccCCcccc---------------------------------------
Confidence 44567788888776 33 68888899999999987543210
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCC--CcEEEEECCCCcEEEEe----------e
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMD--KTVRLWDMETKSCLKLF----------A 592 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~D--gtV~IWDl~t~~~i~~~----------~ 592 (969)
.++..+..+ ..+..+.-++ ...+++|+.. ..+.|||+++.+.+..- .
T Consensus 140 ------------------s~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr 200 (412)
T KOG3881|consen 140 ------------------SKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR 200 (412)
T ss_pred ------------------ccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccce
Confidence 011111111 3455555555 4677779999 89999999988544332 1
Q ss_pred cCCCeEEEEEecCC--CCEEEEEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 593 HNDYVTCIQFNPMD--DDYFISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 593 h~~~V~sv~fsp~~--~~~L~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
-.-.++++.|.+ . ...|+++..-+.|++||.+.+. +..+.-...+++++...|.++++++|..-|.+..||++.+
T Consensus 201 VPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 201 VPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 223567889988 5 6799999999999999998653 3444445688999999999999999999999999999998
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI 719 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~ 719 (969)
+.... ...+..+.|.+|..+|.. .++++++-|..|||+|..+.
T Consensus 280 kl~g~-------~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 280 KLLGC-------GLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred eeecc-------ccCCccCCcceEEEcCCC-ceEEeeccceeEEEeecccc
Confidence 86432 236778999999999987 79999999999999997663
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.4e-08 Score=108.06 Aligned_cols=273 Identities=11% Similarity=0.154 Sum_probs=168.1
Q ss_pred CEEEEEEeCCCCEEEEE-----eCC-----CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 453 SIWTIKFSLDARFLASA-----GED-----RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTg-----s~D-----gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
.+++|.|+|-|.+|.|= -.| ..+++|+++++.....+...........+.......
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~-------------- 140 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLA-------------- 140 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhh--------------
Confidence 78999999999999872 122 346799999854433322211111111111111100
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC---cEEEE-----EeCCCcEEEEECCCCcEEEEee--
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS---HLLLS-----SSMDKTVRLWDMETKSCLKLFA-- 592 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~---~~L~S-----gs~DgtV~IWDl~t~~~i~~~~-- 592 (969)
...+......+....-....-.-|...|..+.++|+ ..+++ .+.-..|+||.+.....-...+
T Consensus 141 -------arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~k 213 (566)
T KOG2315|consen 141 -------ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANK 213 (566)
T ss_pred -------hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhc
Confidence 001111112233322222222346788999999984 34443 3566789999887333222221
Q ss_pred --cCCCeEEEEEecCCCCEEEEEEC-----------CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEE--EeCC
Q 002086 593 --HNDYVTCIQFNPMDDDYFISGSL-----------DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALI--GSHK 657 (969)
Q Consensus 593 --h~~~V~sv~fsp~~~~~L~sgs~-----------Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Las--gs~d 657 (969)
....=..+.|++....+|+.++. ..+++++++.+..+..-....++|.++.|+|+++.|++ |-.-
T Consensus 214 sFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMP 293 (566)
T KOG2315|consen 214 SFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMP 293 (566)
T ss_pred cccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEeccc
Confidence 12223456777633334443332 24688999887677777777899999999999987765 5567
Q ss_pred CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC---CCcEEEEeCCcceEEEEeecCCCCeEE
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA---DSRIRILDGLDIVHKFRGFRNTSSQIS 734 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~---Dg~I~IwD~~~~~~~~~~~~~~~~V~s 734 (969)
-.+.|||++..-.. ....++-.++-|+|.| .+++.++- -|.|-|||..+........ ...-+-
T Consensus 294 Akvtifnlr~~~v~-----------df~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~--a~~tt~ 359 (566)
T KOG2315|consen 294 AKVTIFNLRGKPVF-----------DFPEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRKLIAKFK--AANTTV 359 (566)
T ss_pred ceEEEEcCCCCEeE-----------eCCCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchhhccccc--cCCceE
Confidence 78999999865432 2346677889999998 56666543 4789999977643332222 223456
Q ss_pred EEEeCCCCEEEEEeC------CCcEEEEEcCC
Q 002086 735 AAFNADGKYIISASE------DSQVYVWKREE 760 (969)
Q Consensus 735 l~fspdg~~LaSgs~------Dg~I~IWdl~t 760 (969)
+.|+|||.+|+|++. |+.|+||++..
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 899999999999875 78899999974
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-08 Score=121.23 Aligned_cols=195 Identities=13% Similarity=0.193 Sum_probs=154.3
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeE-----EEEEecCCCCEEEEEECCCeEEEEeCCCc-
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVT-----CIQFNPMDDDYFISGSLDAKVRIWSISDR- 627 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~-----sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~- 627 (969)
+.|....+.. +..++.++.+..+.+||...+.......+..... -+.+++ +.-++++|+.-+.|.+|+....
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccC
Confidence 3344434433 6889999999999999999888777665554322 223444 6678999999999999998743
Q ss_pred eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 628 LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 628 ~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
....+.+|.+.|..+.++-+|.++++.++|.++++|++.+.+... ...-+|...|..++|.|. .+++++.
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------~~~fgHsaRvw~~~~~~n---~i~t~ge 236 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------CTGFGHSARVWACCFLPN---RIITVGE 236 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------cccccccceeEEEEeccc---eeEEecc
Confidence 345688999999999999999999999999999999999987643 223689999999999995 8999999
Q ss_pred CCcEEEEeCCc-ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 708 DSRIRILDGLD-IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 708 Dg~I~IwD~~~-~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|.+.++|+... ....+..|. ...+..++..++...++|++.||.+++|++...
T Consensus 237 dctcrvW~~~~~~l~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 237 DCTCRVWGVNGTQLEVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceEEEEEecccceehhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999997432 222444443 345889999999999999999999999998764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-07 Score=111.63 Aligned_cols=204 Identities=13% Similarity=0.172 Sum_probs=135.5
Q ss_pred CCCceeEeccCCCCEEEEEecC-CcEEEEEeCC---CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEECCC
Q 002086 543 SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSLDA 617 (969)
Q Consensus 543 ~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~Dg 617 (969)
.+.....+..+...+....|+| ++.|+..+.+ ..|.+||+.+++........+.+....|+| +++.|+ +...+|
T Consensus 187 ~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g 265 (430)
T PRK00178 187 DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDG 265 (430)
T ss_pred CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCC
Confidence 3444455666778899999999 7777766543 369999999988766555555666789999 888776 444555
Q ss_pred --eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEE
Q 002086 618 --KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF 692 (969)
Q Consensus 618 --~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l 692 (969)
.|++||+.++....+..+........|+|+|+.|+..+. +| .|+++++.+++..... . ........
T Consensus 266 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt---~------~~~~~~~~ 336 (430)
T PRK00178 266 NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT---F------VGNYNARP 336 (430)
T ss_pred CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee---c------CCCCccce
Confidence 588899999887766666666677899999998877654 33 5777888777643221 0 11223456
Q ss_pred EEcCCCCceEEEEe-CCC--cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC-C--cEEEEEcC
Q 002086 693 QFSPSNPSEVLVTS-ADS--RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED-S--QVYVWKRE 759 (969)
Q Consensus 693 ~fspd~~~~l~sgs-~Dg--~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D-g--~I~IWdl~ 759 (969)
.|+|++. .++..+ .++ .|.+||........-.. ........|+|||++|+..+.+ | .|+++++.
T Consensus 337 ~~Spdg~-~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 337 RLSADGK-TLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EECCCCC-EEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 8999984 555444 333 47888865432222111 1122356899999998876654 2 46666664
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-07 Score=110.69 Aligned_cols=200 Identities=12% Similarity=0.089 Sum_probs=130.7
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCC---CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGED---RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~D---gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+..|...+....|+|||++|+..+.+ ..|.+||+.+++....
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l--------------------------------- 238 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI--------------------------------- 238 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc---------------------------------
Confidence 4455678889999999999998876643 3688889887654321
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE-EEeCCC--cEEEEECCCCcEEEEeecCCCe
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL-SSSMDK--TVRLWDMETKSCLKLFAHNDYV 597 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~-Sgs~Dg--tV~IWDl~t~~~i~~~~h~~~V 597 (969)
....+.+....|+| ++.|+ +.+.++ .|++||+.+++......+....
T Consensus 239 -----------------------------~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~ 289 (430)
T PRK00178 239 -----------------------------TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAID 289 (430)
T ss_pred -----------------------------cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCc
Confidence 00112233578998 66665 455555 6888899998876665666667
Q ss_pred EEEEEecCCCCEEEEEEC-CC--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC-C--cEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSL-DA--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK-G--SCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~-Dg--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d-g--~I~IwDl~~~~~~ 671 (969)
....|+| ++..|+..+. +| .|+++|+.+++...+...........|+|+|++|+....+ + .|.+||+.+++..
T Consensus 290 ~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 290 TEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR 368 (430)
T ss_pred CCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE
Confidence 7789999 8887766554 33 5888888887765544333334567899999999876643 3 5888999887643
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC--cEEEEeCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS--RIRILDGL 717 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg--~I~IwD~~ 717 (969)
... .. .......|+|++...+++...++ .|++++..
T Consensus 369 ~lt--------~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 369 ILT--------DT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred Ecc--------CC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 221 01 11124579999844444444443 35666653
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-07 Score=111.93 Aligned_cols=220 Identities=19% Similarity=0.160 Sum_probs=135.8
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCC-C--cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGED-R--VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~D-g--tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
.+..+...+.+..|+|||++|+..+.+ + .|.+||+.+++.....
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt--------------------------------- 258 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT--------------------------------- 258 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec---------------------------------
Confidence 355567789999999999988876543 3 5788888766542210
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE-EEeCCCc--EEEEECCCCcEEEEeecCCCeE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL-SSSMDKT--VRLWDMETKSCLKLFAHNDYVT 598 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~-Sgs~Dgt--V~IWDl~t~~~i~~~~h~~~V~ 598 (969)
.+.+ ......|+| ++.|+ +.+.++. |.+||+.+++......+.....
T Consensus 259 --------------------------~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~ 309 (448)
T PRK04792 259 --------------------------SFPG---INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDT 309 (448)
T ss_pred --------------------------CCCC---CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCcc
Confidence 0111 123468998 66554 4566665 8888999888766666666778
Q ss_pred EEEEecCCCCEEEEEEC-CC--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceee
Q 002086 599 CIQFNPMDDDYFISGSL-DA--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KG--SCRLYSIEDSKLHQ 672 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~-Dg--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~ 672 (969)
...|+| ++..|+..+. ++ .|+++|+.+++...+..........+|+|+|++|+..+. ++ .|.++|+.+++...
T Consensus 310 ~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 310 EPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred ceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 889999 8887766554 33 477778887776554433333445789999999887654 34 45667887776432
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc--EEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR--IRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~--I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
.. .. .......|+|++...+++...++. +++++..... ........+.+...+|+|
T Consensus 389 lt--------~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~-~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 389 LT--------ST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF-KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred cc--------CC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEECcCCCCCcCCCccCC
Confidence 11 00 011234799999555555555544 6666643221 111122233455666766
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-07 Score=104.72 Aligned_cols=194 Identities=16% Similarity=0.236 Sum_probs=134.7
Q ss_pred cEE-EEEeCCCcEEEEECCCCcEEEEeecCCCe-EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEE
Q 002086 566 HLL-LSSSMDKTVRLWDMETKSCLKLFAHNDYV-TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAAC 643 (969)
Q Consensus 566 ~~L-~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V-~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~ 643 (969)
+++ ++-..++.|.+.|..+.+.+..+.....+ ..+.|+| +++++++++.||.|.++|+.+++++...........++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence 444 45667899999999999999999765554 4577888 99999999999999999999999998888888899999
Q ss_pred EccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-E
Q 002086 644 YTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV-H 721 (969)
Q Consensus 644 fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~-~ 721 (969)
+++||++++++. ..+.+.++|.++.+............ ......+..+..+|..+.+++..-..+.|.+.|..... .
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~-~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV-DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T-TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccc-cccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 999999998765 68999999999988765543321111 12456788888898875555555556888888855432 1
Q ss_pred EEEeecCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCCC
Q 002086 722 KFRGFRNTSSQISAAFNADGKYIISA-SEDSQVYVWKREEH 761 (969)
Q Consensus 722 ~~~~~~~~~~V~sl~fspdg~~LaSg-s~Dg~I~IWdl~t~ 761 (969)
...............|+|+++|++.+ ..+..|-++|..+.
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence 22233334456788999999987765 45678999999874
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=116.64 Aligned_cols=250 Identities=15% Similarity=0.218 Sum_probs=173.7
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
.....|+.|+....|+|.||.||.++|-.+.+...-....+ . ...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----l-------------------------------aa~ 58 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG----L-------------------------------AAA 58 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc----c-------------------------------ccc
Confidence 34567999999999999999999999998875322110000 0 000
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCC
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMD 606 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~ 606 (969)
. .-..-+++.||.+.|.-+.|+. .+.|-|+..+|-|.+|-+-.+.-...+ .....|.+++|+. +
T Consensus 59 s-----------nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-d 126 (1189)
T KOG2041|consen 59 S-----------NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-D 126 (1189)
T ss_pred c-----------ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-C
Confidence 0 0001136889999999999998 788889999999999998877644332 4567899999998 9
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee---eeeeeeeccccc
Q 002086 607 DDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH---QLNQVDFQTKKK 683 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~---~~~~~~~~~~~~ 683 (969)
|..|.....||.|.+=.+....+....-.......+.|++|.+.++.+-.+|.+.+||....-.. ....+.......
T Consensus 127 G~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s 206 (1189)
T KOG2041|consen 127 GTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFS 206 (1189)
T ss_pred CcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeec
Confidence 99999999999999888877665433222233567899999999999999999999998764221 111122222223
Q ss_pred CCCCCeEEEEEc--------CCCCceEEEEeCCCcEEEEeCCc-ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 684 SSTRKITGFQFS--------PSNPSEVLVTSADSRIRILDGLD-IVHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 684 ~h~~~It~l~fs--------pd~~~~l~sgs~Dg~I~IwD~~~-~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
.....|..+.|. |+. ..++++..+|.+.|-...+ ....+.. ..-.+..+.|+++|..|+.++.|
T Consensus 207 ~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 207 NFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCCccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCc
Confidence 333446666664 344 5789999999988875332 2222211 22457789999999999999875
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.5e-08 Score=101.71 Aligned_cols=260 Identities=17% Similarity=0.202 Sum_probs=171.8
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEE-EEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLA-SAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~La-Tgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
|..++++.+-+.- -+.|.-|.|..|..+++ ....|+.|.+|++..-+-..
T Consensus 35 d~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c---------------------------- 85 (447)
T KOG4497|consen 35 DSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC---------------------------- 85 (447)
T ss_pred ccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE----------------------------
Confidence 4444444443332 46788899998887554 45779999999987543322
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEECCCCcEEEEeec
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-S-HLLLSSSMDKTVRLWDMETKSCLKLFAH 593 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~-~~L~Sgs~DgtV~IWDl~t~~~i~~~~h 593 (969)
.+....+++..++|+| + ..|.+...|-.|.+|.+.+.++....--
T Consensus 86 ---------------------------------kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p 132 (447)
T KOG4497|consen 86 ---------------------------------KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP 132 (447)
T ss_pred ---------------------------------EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc
Confidence 3444567889999999 5 6777888999999999999888776655
Q ss_pred CCCeEEEEEecCCCCEEEEEEC------------------------------------CCeEEEEeCCCceEEEEecCCC
Q 002086 594 NDYVTCIQFNPMDDDYFISGSL------------------------------------DAKVRIWSISDRLVVDWTDLHE 637 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~------------------------------------Dg~I~IWDl~~~~~~~~~~~~~ 637 (969)
...+..++|+| ++++.+.++. +..+.+||---...+......-
T Consensus 133 K~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~l 211 (447)
T KOG4497|consen 133 KTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL 211 (447)
T ss_pred ccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeecc
Confidence 56678899999 8887776653 2234555543332223333445
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee--------------------------------------------
Q 002086 638 MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL-------------------------------------------- 673 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~-------------------------------------------- 673 (969)
.+..++|+|.+++|++|+.|+.++|.+--+.+....
T Consensus 212 G~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~ 291 (447)
T KOG4497|consen 212 GLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEE 291 (447)
T ss_pred ceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcccc
Confidence 688999999999999999999888754322111000
Q ss_pred ---------eeeee-----cccccCCCCCeEEEEEcCCCCceEEEEeC--CCcEEEEeCCcceEEEEeecCCCCeEEEEE
Q 002086 674 ---------NQVDF-----QTKKKSSTRKITGFQFSPSNPSEVLVTSA--DSRIRILDGLDIVHKFRGFRNTSSQISAAF 737 (969)
Q Consensus 674 ---------~~~~~-----~~~~~~h~~~It~l~fspd~~~~l~sgs~--Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~f 737 (969)
..+.+ ........-.+.-++|++|. .++++-.. -..+-+||+.+... ........+|....|
T Consensus 292 se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l-~avLiQk~piraf~W 369 (447)
T KOG4497|consen 292 SETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKL-HAVLIQKHPIRAFEW 369 (447)
T ss_pred chhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhh-hhhhhhccceeEEEe
Confidence 00000 01112234456779999986 44444322 24589999765432 112223456889999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 738 NADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 738 spdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+|....|+.+.....+++|.....
T Consensus 370 dP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 370 DPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred CCCCceEEEEcCCceEEEEcCCCc
Confidence 999988888888888999998753
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-07 Score=110.12 Aligned_cols=200 Identities=16% Similarity=0.216 Sum_probs=128.0
Q ss_pred eEeccCCCCEEEEEecC-CcEEEEEeC-CC--cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEE-EECCCe--EE
Q 002086 548 CSFIGHLDDVLDLSWSR-SHLLLSSSM-DK--TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFIS-GSLDAK--VR 620 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~-~~~L~Sgs~-Dg--tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~s-gs~Dg~--I~ 620 (969)
..+..+...+....|+| ++.|+..+. ++ .|.+||+.+++........+......|+| +++.|+. ...+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEE
Confidence 34555667888999999 677776654 33 58899999887655443344455789999 8887654 566664 88
Q ss_pred EEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 621 IWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 621 IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
+||+.+++...+..+.......+|+|||+.|+..+. ++ .|+++|+.+++..... ..........|+|+
T Consensus 290 ~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt---------~~g~~~~~~~~SpD 360 (448)
T PRK04792 290 VVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT---------FEGEQNLGGSITPD 360 (448)
T ss_pred EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe---------cCCCCCcCeeECCC
Confidence 889998887776666566778899999998877654 33 5677787776643221 01122334689999
Q ss_pred CCceEEEEeCCCc--EEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC-Cc--EEEEEcC
Q 002086 698 NPSEVLVTSADSR--IRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED-SQ--VYVWKRE 759 (969)
Q Consensus 698 ~~~~l~sgs~Dg~--I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D-g~--I~IWdl~ 759 (969)
+..++++...++. |.++|.......... . ........|+|||++|+..+.+ |. |++++++
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~~~~lt-~-~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGAMQVLT-S-TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCCeEEcc-C-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 9544444444443 555675443222111 1 1112245799999988766543 33 6777764
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-06 Score=94.59 Aligned_cols=268 Identities=14% Similarity=0.058 Sum_probs=164.7
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeC----------CCcEEEEecccceEEEeecCCccCcccccccCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGE----------DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~----------DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~ 504 (969)
+.|..+++.+.++..-..+-- + ++|||+.|+.+.. +..|.|||+.+++.+..+.....+..
T Consensus 31 ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~------- 101 (352)
T TIGR02658 31 TIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF------- 101 (352)
T ss_pred EEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh-------
Confidence 457777888888876555543 5 9999997776654 78999999999988875442111000
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-C-CCcEEEEE
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-M-DKTVRLWD 581 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~-DgtV~IWD 581 (969)
. ....-..+++++ +++|+... . +..|-+.|
T Consensus 102 --------------------------------------------~---~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD 134 (352)
T TIGR02658 102 --------------------------------------------L---VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVD 134 (352)
T ss_pred --------------------------------------------h---ccCccceEEECCCCCEEEEecCCCCCEEEEEE
Confidence 0 011223577888 67777665 3 79999999
Q ss_pred CCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEE----EEecC-CCCE-EEEEEcc-CCCEEEE
Q 002086 582 METKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVV----DWTDL-HEMV-TAACYTP-DGQNALI 653 (969)
Q Consensus 582 l~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~----~~~~~-~~~V-~sv~fsp-dg~~Las 653 (969)
+.+++.+..+.-.+...-+..+ ...+.+.+.||......+.. ++.. ..+.. ...+ ..-.|.+ +|.++.+
T Consensus 135 ~~~~kvv~ei~vp~~~~vy~t~---e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v 211 (352)
T TIGR02658 135 LEGKAFVRMMDVPDCYHIFPTA---NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP 211 (352)
T ss_pred CCCCcEEEEEeCCCCcEEEEec---CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEE
Confidence 9999999988654433333332 22222334566655544432 2211 11111 0000 0014455 7887777
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeeecccc----cCCCCCeEEEEEcCCCCceEEEEe---------CCCcEEEEeCCcce
Q 002086 654 GSHKGSCRLYSIEDSKLHQLNQVDFQTKK----KSSTRKITGFQFSPSNPSEVLVTS---------ADSRIRILDGLDIV 720 (969)
Q Consensus 654 gs~dg~I~IwDl~~~~~~~~~~~~~~~~~----~~h~~~It~l~fspd~~~~l~sgs---------~Dg~I~IwD~~~~~ 720 (969)
..+ |.|.+.|+..........+...... ......+.-+++++++...++... ..+.|.++|..+..
T Consensus 212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k 290 (352)
T TIGR02658 212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK 290 (352)
T ss_pred ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence 776 9999999766554333222221111 224455566999999855444342 22579999977655
Q ss_pred EEEEeecCCCCeEEEEEeCCCC-EEEEEe-CCCcEEEEEcCCCCc
Q 002086 721 HKFRGFRNTSSQISAAFNADGK-YIISAS-EDSQVYVWKREEHRN 763 (969)
Q Consensus 721 ~~~~~~~~~~~V~sl~fspdg~-~LaSgs-~Dg~I~IWdl~t~~~ 763 (969)
...... -...+..++|+|||+ +|++.+ .++.|.+.|+.+.+.
T Consensus 291 vi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 291 RLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 544433 234688999999999 887666 578899999998543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.9e-08 Score=108.42 Aligned_cols=183 Identities=11% Similarity=0.196 Sum_probs=144.8
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
+|..++.+..|.--.+.|++|..++-..+|++|+.||.|-.||..+.+.+..+..... + ..
T Consensus 161 NLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v------------------~s 221 (703)
T KOG2321|consen 161 NLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-V------------------NS 221 (703)
T ss_pred EccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc-c------------------CC
Confidence 7888889999998889999999999999999999999999999987665554321100 0 00
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecC-
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHN- 594 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~- 594 (969)
.........|+++.|.. +-.+++|..+|.|.|||+++.+++..-.|.
T Consensus 222 -------------------------------~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~ 270 (703)
T KOG2321|consen 222 -------------------------------HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY 270 (703)
T ss_pred -------------------------------CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC
Confidence 00111234599999998 788999999999999999999988887665
Q ss_pred -CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 595 -DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 595 -~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
-+|..+.|.+.++.--+.......++|||-.+++..........+..+|+-|++.+++++-.++.+..|-+....
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred ccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 578999998843333333344577999999999999888888889999999999999999999988888776543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.6e-08 Score=103.86 Aligned_cols=251 Identities=16% Similarity=0.229 Sum_probs=176.8
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEeccc-ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQE-CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~t-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
..+++.++||.+.|++...-|...-+++.+.|.++|||--.+ ++.-..
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps------------------------------- 62 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS------------------------------- 62 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch-------------------------------
Confidence 345677899999999999999888899999999999996432 111000
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC----CcEEEEe-ec
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET----KSCLKLF-AH 593 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t----~~~i~~~-~h 593 (969)
....-..+++++.+.. ...|+.|-..|++.-+.+.. ....+.+ .|
T Consensus 63 -----------------------------I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h 113 (404)
T KOG1409|consen 63 -----------------------------IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH 113 (404)
T ss_pred -----------------------------hhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence 0111235677888887 67888888899998886643 2233333 79
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
...|..+-|+- ....+++.+.|..+.---.+.+..+.-+......+++.+.-. +..+|...|.|.+..+....+.
T Consensus 114 ~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~-- 188 (404)
T KOG1409|consen 114 QARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQ-- 188 (404)
T ss_pred hcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCc--
Confidence 99999999987 788999999988765444444433221111111122222211 5666777777777666544433
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC-cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL-DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
+.....+|...++++.|.+.. ..+++|..|..+.+||+. .....+..+.|...|..+..-+--+.|+++++||.
T Consensus 189 ----~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 189 ----LITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG 263 (404)
T ss_pred ----eEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe
Confidence 223448999999999999976 899999999999999954 33344555666777888887778889999999999
Q ss_pred EEEEEcCCC
Q 002086 753 VYVWKREEH 761 (969)
Q Consensus 753 I~IWdl~t~ 761 (969)
|.+|+.+..
T Consensus 264 i~~w~mn~~ 272 (404)
T KOG1409|consen 264 IVVWNMNVK 272 (404)
T ss_pred EEEEeccce
Confidence 999999864
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.1e-07 Score=96.49 Aligned_cols=195 Identities=14% Similarity=0.154 Sum_probs=135.6
Q ss_pred EEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEE--Ee-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-EE-
Q 002086 557 VLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLK--LF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VV- 630 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~--~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-~~- 630 (969)
..++.|++ +..++++-.+|.+.+-+.......+ .. .|..+++...|+..+.+++++|+.|+.+..||++... .+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45778887 7789999999999866665555544 23 7999999999998788999999999999999999332 22
Q ss_pred -EEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCC-ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 631 -DWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDS-KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 631 -~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~-~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
....|...|.+|.-+| .+.++++|+.|..|++||.++- +.+.. ....+.|..+.++|.....+++++.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~---------~~v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK---------AKVGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc---------CccccceEEEEecchhhhHHHHHHH
Confidence 2345667788888776 4779999999999999999953 32211 3345889999999976556677777
Q ss_pred CCcEEEEeCCcceEE----EEe-ecCCCCeEEEEEeCCCCEEEEEe-CCCcEE-EEEcCC
Q 002086 708 DSRIRILDGLDIVHK----FRG-FRNTSSQISAAFNADGKYIISAS-EDSQVY-VWKREE 760 (969)
Q Consensus 708 Dg~I~IwD~~~~~~~----~~~-~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~-IWdl~t 760 (969)
-.-.+|.+....... +.. ..|..-+..-.|.....+|+||+ .|..|+ +|-.-+
T Consensus 275 h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 275 HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 777777774432222 222 22333344445544345788865 366644 665444
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-05 Score=92.18 Aligned_cols=199 Identities=14% Similarity=0.239 Sum_probs=131.8
Q ss_pred CEEEEEecC-CcEEEEEeC----CCcEEEEECCCC--cEE--EEee-cCCCeEEEEEecCCCCEEEEEE-CCCeEEEEeC
Q 002086 556 DVLDLSWSR-SHLLLSSSM----DKTVRLWDMETK--SCL--KLFA-HNDYVTCIQFNPMDDDYFISGS-LDAKVRIWSI 624 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs~----DgtV~IWDl~t~--~~i--~~~~-h~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IWDl 624 (969)
....+++++ +++|++... ++.|..|++... .+. .... .......++++| ++.+|+++. .+|.|.++++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEc
Confidence 344577787 777777766 578999988764 332 2233 455667899999 888888776 4899999999
Q ss_pred CC-ceEEEE---ec-----------CCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCc--eeeeeeeeecccccCCC
Q 002086 625 SD-RLVVDW---TD-----------LHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSK--LHQLNQVDFQTKKKSST 686 (969)
Q Consensus 625 ~~-~~~~~~---~~-----------~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~--~~~~~~~~~~~~~~~h~ 686 (969)
.. +.+... .. ......++.|+|+|+++++.. ....|.+|++.... +.....+ .....
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-----~~~~G 191 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI-----KVPPG 191 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE-----ECSTT
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc-----ccccC
Confidence 86 433322 21 124478999999999888765 45689999998765 3322211 13456
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCcEEEEeCC--cce----EEEEee----cCCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 002086 687 RKITGFQFSPSNPSEVLVTSADSRIRILDGL--DIV----HKFRGF----RNTSSQISAAFNADGKYIISASE-DSQVYV 755 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~--~~~----~~~~~~----~~~~~V~sl~fspdg~~LaSgs~-Dg~I~I 755 (969)
.....+.|+|++...+++.-.++.|.+++.. ... ...... ........+.++|||++|+++.. .+.|.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 6788999999986666677778889999855 221 111111 11225678999999999887764 667999
Q ss_pred EEcCC
Q 002086 756 WKREE 760 (969)
Q Consensus 756 Wdl~t 760 (969)
|+++.
T Consensus 272 f~~d~ 276 (345)
T PF10282_consen 272 FDLDP 276 (345)
T ss_dssp EEECT
T ss_pred EEEec
Confidence 99954
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.5e-07 Score=100.85 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=116.6
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEE
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTA 641 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~s 641 (969)
..++-|...|.|.+|++..++....+ .|.+.|.++.++. +-..|.+++.|+.+..|+.....+.. +......+.+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 57888899999999999999988777 6999999999987 78899999999999999999987665 4455677999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC-----CCceEEEEeCCCcEEEEe
Q 002086 642 ACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS-----NPSEVLVTSADSRIRILD 715 (969)
Q Consensus 642 v~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd-----~~~~l~sgs~Dg~I~IwD 715 (969)
++++|||..+++++ +.|++||+++.+....+ .+|.++|.++.|.-. |..+|.+...+.-|.+|-
T Consensus 150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~f--------tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 150 LCISPDGKILLTAS--RQIKVLDIETKEVVITF--------TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EEEcCCCCEEEecc--ceEEEEEccCceEEEEe--------cCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 99999999999886 58999999999876554 789999999999876 433444445566677775
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-08 Score=124.21 Aligned_cols=197 Identities=17% Similarity=0.266 Sum_probs=143.5
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCc-cCcccccccCCCCCcc-CCCCCCCCCccccc
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNL-TPIHPSLCNSSDKASS-LDGSSPNPPPEKKK 523 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~-~~v~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 523 (969)
.++.|-..|.++.-+|...+.+||+.||.|++|....++.+..+.... ..+..+.+...++... .+|
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~----------- 2271 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDG----------- 2271 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeecc-----------
Confidence 355667788999999989999999999999999999888776543221 2222222222221111 111
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEe---CCCcEEEEECCCCc--EEEEeecCCCeE
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSS---MDKTVRLWDMETKS--CLKLFAHNDYVT 598 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs---~DgtV~IWDl~t~~--~i~~~~h~~~V~ 598 (969)
......|....+++...+.|.....++.|-. ..+++++ .++.+.+||..-.. .+....|.+.++
T Consensus 2272 ----------dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT 2340 (2439)
T KOG1064|consen 2272 ----------DGDLSLWQASPKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGAT 2340 (2439)
T ss_pred ----------CCceeecccCCcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceeeeecCCCce
Confidence 1112344556788888999999999999985 6677764 67899999975432 222258999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
++++-| ..++|++|+.+|.|++||++..++++.+.. ++ ...+|++|+..|.|+||++.........
T Consensus 2341 ~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2341 VLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred EEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 999999 899999999999999999998876654433 34 5679999999999999999887655443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.9e-06 Score=106.32 Aligned_cols=206 Identities=14% Similarity=0.193 Sum_probs=135.9
Q ss_pred CEEEEEecC-CcEEEEE-eCCCcEEEEECCCCcEEEEeec-----------------CCCeEEEEEecCCCCEEEEEECC
Q 002086 556 DVLDLSWSR-SHLLLSS-SMDKTVRLWDMETKSCLKLFAH-----------------NDYVTCIQFNPMDDDYFISGSLD 616 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~t~~~i~~~~h-----------------~~~V~sv~fsp~~~~~L~sgs~D 616 (969)
....|++.+ ++.|+.+ ...+.|+++|+.++......+. -.....|+|+|.++.++++...+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 346788887 5655554 4567899999987664433210 12346899998556677777888
Q ss_pred CeEEEEeCCCceEEEEecC---------------CCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeee----
Q 002086 617 AKVRIWSISDRLVVDWTDL---------------HEMVTAACYTPDGQNAL-IGSHKGSCRLYSIEDSKLHQLNQV---- 676 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~~---------------~~~V~sv~fspdg~~La-sgs~dg~I~IwDl~~~~~~~~~~~---- 676 (969)
+.|++||..++.+..+.+. -.....|+++|+++.|+ +-+.++.|++||+.++........
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 9999999988765443221 12356799999998554 556678999999987653211100
Q ss_pred -----eeccc----ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE-EEEeec------------CCCCeEE
Q 002086 677 -----DFQTK----KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH-KFRGFR------------NTSSQIS 734 (969)
Q Consensus 677 -----~~~~~----~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~-~~~~~~------------~~~~V~s 734 (969)
.+... .........++++++++ .++++-..++.|++||...... .+.+.. .......
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 00000 00112234688999988 6788888899999999754322 222211 1124568
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 735 AAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 735 l~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
++++++|+++++-+.++.|++||+.+++
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 9999999999999999999999998854
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-06 Score=95.23 Aligned_cols=273 Identities=16% Similarity=0.231 Sum_probs=172.0
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCC---------------cEEEEecccceEEEeecCCccC--cc-cccccCCCCCccCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDR---------------VIHVWEVQECEVMSMSEGNLTP--IH-PSLCNSSDKASSLDG 512 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~Dg---------------tVrIWDl~tg~~l~~~~~~~~~--v~-~~~~~~~~~~~~~~g 512 (969)
...|.-+.|+|.++||.|=+... .+.|||+.+|.++..+.+...+ .. .+.+...+...+
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A--- 147 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA--- 147 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh---
Confidence 34689999999999999976533 4999999999998876654433 11 111111111100
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeee----cCCCceeEeccCCCCEEEEEecCC---cEEEE-----EeCCCcEEEE
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFS----LSEKPFCSFIGHLDDVLDLSWSRS---HLLLS-----SSMDKTVRLW 580 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~k~~~~l~gH~~~I~~l~fs~~---~~L~S-----gs~DgtV~IW 580 (969)
.. +.....++. +...++..+. ...|....|+|. ..|+. ...+++++||
T Consensus 148 -------------Rv-----v~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~ 207 (561)
T COG5354 148 -------------RV-----VGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRIL 207 (561)
T ss_pred -------------hh-----ccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEE
Confidence 00 000111111 1122222332 356788888882 23443 3678899999
Q ss_pred ECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEE-----------CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCC
Q 002086 581 DMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGS-----------LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDG 648 (969)
Q Consensus 581 Dl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs-----------~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg 648 (969)
.+..+..+.+.. ....=..+.|++ .+++|++-- ....++|++++...+.......++|...+|.|.+
T Consensus 208 sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S 286 (561)
T COG5354 208 SIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLS 286 (561)
T ss_pred EccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccC
Confidence 998777765442 222234567777 666554321 1256889999866655555778999999999998
Q ss_pred CEEEE--EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC---CcEEEEeCCcceEEE
Q 002086 649 QNALI--GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD---SRIRILDGLDIVHKF 723 (969)
Q Consensus 649 ~~Las--gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D---g~I~IwD~~~~~~~~ 723 (969)
+.+++ |...-.+.++|++.+-.. ......=..+.|+|.. .++++++-| |.|-+||........
T Consensus 287 ~~F~vi~g~~pa~~s~~~lr~Nl~~-----------~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~~~ 354 (561)
T COG5354 287 SRFAVISGYMPASVSVFDLRGNLRF-----------YFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFKVA 354 (561)
T ss_pred CceeEEecccccceeecccccceEE-----------ecCCcccccccccCcc-cEEEEecCCccccceEEeccCCceEEE
Confidence 87765 457889999999887221 1223333456799988 677776544 679999976554444
Q ss_pred EeecCCCCeEEEEEeCCCCEEEEEeC------CCcEEEEEcCC
Q 002086 724 RGFRNTSSQISAAFNADGKYIISASE------DSQVYVWKREE 760 (969)
Q Consensus 724 ~~~~~~~~V~sl~fspdg~~LaSgs~------Dg~I~IWdl~t 760 (969)
..+.. ....-+.|+|||+++.+... |..|.||++..
T Consensus 355 ~~~~~-~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 355 GAFNG-LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEeec-CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 32222 23445789999999987753 78899999975
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.5e-05 Score=83.16 Aligned_cols=253 Identities=14% Similarity=0.266 Sum_probs=169.2
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCC---CcEEEEeccc--ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGED---RVIHVWEVQE--CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~D---gtVrIWDl~t--g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+-++.+.++=|+|+|++++|.++..+ |.|--|.++. |++......
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~------------------------------ 84 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ------------------------------ 84 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc------------------------------
Confidence 44678899999999999999988654 6777777663 444321000
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC-CCcEEEEECCC-CcE---EEEeecCC
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-DKTVRLWDMET-KSC---LKLFAHND 595 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-DgtV~IWDl~t-~~~---i~~~~h~~ 595 (969)
.+.| .+-.-+++++ +++|+++.. -|.|.++-++. |.. +....|.+
T Consensus 85 ---------------------------~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g 135 (346)
T COG2706 85 ---------------------------TLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTG 135 (346)
T ss_pred ---------------------------ccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCC
Confidence 1111 1225677887 677777764 58899999865 433 34456666
Q ss_pred C----------eEEEEEecCCCCEEEEEECC-CeEEEEeCCCceEEEE----ecCCCCEEEEEEccCCCEEEEEe-CCCc
Q 002086 596 Y----------VTCIQFNPMDDDYFISGSLD-AKVRIWSISDRLVVDW----TDLHEMVTAACYTPDGQNALIGS-HKGS 659 (969)
Q Consensus 596 ~----------V~sv~fsp~~~~~L~sgs~D-g~I~IWDl~~~~~~~~----~~~~~~V~sv~fspdg~~Lasgs-~dg~ 659 (969)
. +.+..|.| ++++|++.... -.|.+|++..+.+... .......+.|.|+|++++..+.+ -+++
T Consensus 136 ~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st 214 (346)
T COG2706 136 SGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST 214 (346)
T ss_pred CCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE
Confidence 6 88999999 88888887542 4699999998765432 23446689999999999987655 5899
Q ss_pred EEEEEcCC--CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE-eCCCcEEEEeCCcc--eEEEEee--cCCCCe
Q 002086 660 CRLYSIED--SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT-SADSRIRILDGLDI--VHKFRGF--RNTSSQ 732 (969)
Q Consensus 660 I~IwDl~~--~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg-s~Dg~I~IwD~~~~--~~~~~~~--~~~~~V 732 (969)
|-+|.... ++......+......-........|..+++| ++|.++ -....|.+|.+... ...+... .+...-
T Consensus 215 V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P 293 (346)
T COG2706 215 VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP 293 (346)
T ss_pred EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC
Confidence 99999887 3433332222222223345677889999999 555555 33457888875432 2222222 222335
Q ss_pred EEEEEeCCCCEEEEEeCCC-cEEEEEcCC
Q 002086 733 ISAAFNADGKYIISASEDS-QVYVWKREE 760 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg-~I~IWdl~t 760 (969)
....|+++|++|+++..|+ .|.+|.++.
T Consensus 294 R~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 294 RDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred ccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 6789999999999998864 599998875
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-08 Score=123.39 Aligned_cols=194 Identities=15% Similarity=0.271 Sum_probs=155.4
Q ss_pred eccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 550 FIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 550 l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
++.|-..|.++.-+| ..+.+||+.||.|++|....++.+..+ .....|+.+.|+. .|+.+..+..||.+.+|.+..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCC
Confidence 445667788888888 789999999999999999999988777 3338899999998 899999999999999999997
Q ss_pred ceEEEEecCCCCEEEEEEccCCCEEEEEe---CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 627 RLVVDWTDLHEMVTAACYTPDGQNALIGS---HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 627 ~~~~~~~~~~~~V~sv~fspdg~~Lasgs---~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
.....+..|......+.|-. ..+++++ .++.+.+||.--....... ...|...++++++.|.. +.|+
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-------~~~H~~gaT~l~~~P~~-qlli 2352 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-------HTCHDGGATVLAYAPKH-QLLI 2352 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee-------eeecCCCceEEEEcCcc-eEEE
Confidence 77778888888888888876 5566543 5789999997543322111 16799999999999987 8999
Q ss_pred EEeCCCcEEEEeCCcce--EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCC
Q 002086 704 VTSADSRIRILDGLDIV--HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAST 766 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~~--~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t 766 (969)
+|+.+|.|++||.+... +.+.. +. ...++++|+..|.|+||++.....+.+
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhc
Confidence 99999999999976533 22221 34 567999999999999999998655444
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.5e-07 Score=94.71 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=115.1
Q ss_pred EeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECC-CCcEEEE--eecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 549 SFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDME-TKSCLKL--FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~-t~~~i~~--~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.++.|.-+++...|+. .+++.+|+.|+.+..||++ .++++.. ..|...|.+|.-+|..+.+|++|+.|-.|++||
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 6788999999999986 6899999999999999999 3444433 369999999999997889999999999999999
Q ss_pred CCC-ceEEEEecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 624 ISD-RLVVDWTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 624 l~~-~~~~~~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
.++ ++++......+.|..+..+|.-. .++.++.-.-.+|.++...... .++.+ ...+.|.+-++.-.|.... .+
T Consensus 240 tRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e--~~~~~-~s~~~hdSl~YG~DWd~~~-~~ 315 (339)
T KOG0280|consen 240 TRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE--FQIVL-PSDKIHDSLCYGGDWDSKD-SF 315 (339)
T ss_pred hhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc--hheee-eccccccceeecccccccc-ce
Confidence 984 66776666678899999999543 3344444555677777665433 11111 1124566666666664332 45
Q ss_pred EEEEe-CCCcEE-EE
Q 002086 702 VLVTS-ADSRIR-IL 714 (969)
Q Consensus 702 l~sgs-~Dg~I~-Iw 714 (969)
|++++ .|..|+ +|
T Consensus 316 lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 316 LATCSFYDKKIRQLW 330 (339)
T ss_pred eeeeeccccceeeee
Confidence 66653 344433 44
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-06 Score=97.85 Aligned_cols=203 Identities=14% Similarity=0.150 Sum_probs=124.5
Q ss_pred eeEeccCCCCEEEEEecC-CcE--E-EEEeCC--CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEEC-----
Q 002086 547 FCSFIGHLDDVLDLSWSR-SHL--L-LSSSMD--KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSL----- 615 (969)
Q Consensus 547 ~~~l~gH~~~I~~l~fs~-~~~--L-~Sgs~D--gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~----- 615 (969)
...+......+..-.|+| ++. + ++...+ ..|.+.++.+++...+....+.....+|+| +++.|+..+.
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~ 255 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFISDRYGNP 255 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEECCCCCc
Confidence 334444555667779999 433 2 344444 358888999888766665666667789999 8988876553
Q ss_pred CCeEEEEeCCC---ceEEEEecCC-CCEEEEEEccCCCEEEEEe-CCCcEEEE--EcCCC-ceeeeeeeeecccccCCCC
Q 002086 616 DAKVRIWSISD---RLVVDWTDLH-EMVTAACYTPDGQNALIGS-HKGSCRLY--SIEDS-KLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 616 Dg~I~IWDl~~---~~~~~~~~~~-~~V~sv~fspdg~~Lasgs-~dg~I~Iw--Dl~~~-~~~~~~~~~~~~~~~~h~~ 687 (969)
+..+.+|++.. +....+.... ......+|+|||+.|+..+ .+|...|| ++... .... .+ .....
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~--~l------t~~~~ 327 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR--LL------TKKYR 327 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE--Ee------ccCCC
Confidence 22345577764 3444444332 3446789999999888765 46655555 44321 1111 00 12234
Q ss_pred CeEEEEEcCCCCceEEEE-eCC--CcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCC
Q 002086 688 KITGFQFSPSNPSEVLVT-SAD--SRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE---DSQVYVWKREE 760 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sg-s~D--g~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~---Dg~I~IWdl~t 760 (969)
.+....|+|++ ..|+.. ..+ ..|++||......... ......+....|+|||++|+.... ...|++|++.+
T Consensus 328 ~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 328 NSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 56788999999 455544 333 3689999754432221 112234567899999998875443 34688889876
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-05 Score=88.45 Aligned_cols=289 Identities=14% Similarity=0.137 Sum_probs=164.1
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
...+...+++++|+++|-+. +..|+|++..++..+.+.... ....+.+.+.+..... +.......... .
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T------~e~~~i~~~~~--~ 102 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLT------WEPWAIYGPKN--A 102 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeeccccccccc------ccccccccCCC--C
Confidence 34477889999999888765 667999999888533322211 1222222222111110 00000000000 0
Q ss_pred CcccccceeeecCC-CceeEecc-CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCC
Q 002086 531 DYVHVPETVFSLSE-KPFCSFIG-HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDD 608 (969)
Q Consensus 531 ~~~~~~~~v~~~~~-k~~~~l~g-H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~ 608 (969)
. .....+|.... .....+.. .+.. ++..|+.+..|++=-..+.|.+|++...+.+...-|...|+.+.++|....
T Consensus 103 ~--~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~ 179 (566)
T KOG2315|consen 103 S--NPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEP 179 (566)
T ss_pred C--CCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCC
Confidence 0 11112222222 11111111 2222 688888876666666678899999998666665568889999999994233
Q ss_pred -EEEE-----EECCCeEEEEeCCCceEEEEecC----CCCEEEEEEccCCCEEEE-Ee--C---------CCcEEEEEcC
Q 002086 609 -YFIS-----GSLDAKVRIWSISDRLVVDWTDL----HEMVTAACYTPDGQNALI-GS--H---------KGSCRLYSIE 666 (969)
Q Consensus 609 -~L~s-----gs~Dg~I~IWDl~~~~~~~~~~~----~~~V~sv~fspdg~~Las-gs--~---------dg~I~IwDl~ 666 (969)
.+++ .+.-..|+||...-......... ...-..+.|++-|.-|++ ++ - ..+++++++.
T Consensus 180 ~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~ 259 (566)
T KOG2315|consen 180 PFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ 259 (566)
T ss_pred ceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence 3333 34456799998863322111111 112234667776653332 22 1 2368888887
Q ss_pred CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE-EeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEE
Q 002086 667 DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV-TSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYII 745 (969)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s-gs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~La 745 (969)
....... -...++|.++.|+|++..+.++ |-+-..+.|||.+- ...+.. ..++-+++-|+|.|++|+
T Consensus 260 g~s~~V~---------L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 260 GESVSVP---------LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIIL 327 (566)
T ss_pred CceEEEe---------cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEE
Confidence 4332211 2347899999999998444333 45667899999653 222322 345567899999999999
Q ss_pred EEeCC---CcEEEEEcCCCCccC
Q 002086 746 SASED---SQVYVWKREEHRNAS 765 (969)
Q Consensus 746 Sgs~D---g~I~IWdl~t~~~~~ 765 (969)
.+|-+ |.|-|||+.+.+++.
T Consensus 328 lAGFGNL~G~mEvwDv~n~K~i~ 350 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPNRKLIA 350 (566)
T ss_pred EeecCCCCCceEEEeccchhhcc
Confidence 88764 789999999855443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.4e-05 Score=84.05 Aligned_cols=203 Identities=17% Similarity=0.275 Sum_probs=142.0
Q ss_pred cCCCCEEEEEecC-CcEEEEEeC---CCcEEEEECCC--CcEEEEe---ecCCCeEEEEEecCCCCEEEEEEC-CCeEEE
Q 002086 552 GHLDDVLDLSWSR-SHLLLSSSM---DKTVRLWDMET--KSCLKLF---AHNDYVTCIQFNPMDDDYFISGSL-DAKVRI 621 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~Sgs~---DgtV~IWDl~t--~~~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~I 621 (969)
.+.+..+-|+|++ +++|.++-. +|.|.-|.+.. |.....- .-..+-.-+++++ ++++++++.. -|.|.+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEE
Confidence 3556677899998 567777754 57788777764 4443322 2233448899998 8888888765 478999
Q ss_pred EeCCC-ce---EEEEecCCCC----------EEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCCC
Q 002086 622 WSISD-RL---VVDWTDLHEM----------VTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSST 686 (969)
Q Consensus 622 WDl~~-~~---~~~~~~~~~~----------V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~ 686 (969)
+-++. |. ++....|.+. +....+.|++++|++.+ ....|.+|++..+++.......+ ...
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-----~~G 190 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-----KPG 190 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-----CCC
Confidence 99865 43 3344445444 88899999999998866 45689999999888765544332 345
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEE----------eecCCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q 002086 687 RKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR----------GFRNTSSQISAAFNADGKYIISASE-DSQVYV 755 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~----------~~~~~~~V~sl~fspdg~~LaSgs~-Dg~I~I 755 (969)
..-..|.|+|+++-..++.-.+++|.+|........+. .+......-.+.+++||++|.++.. ...|-+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 56778999999966666677899999998554322221 2334455668899999999998865 346888
Q ss_pred EEcCC
Q 002086 756 WKREE 760 (969)
Q Consensus 756 Wdl~t 760 (969)
|.+..
T Consensus 271 f~V~~ 275 (346)
T COG2706 271 FSVDP 275 (346)
T ss_pred EEEcC
Confidence 88875
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-05 Score=100.83 Aligned_cols=290 Identities=13% Similarity=0.183 Sum_probs=169.9
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
-...|.|++||||+.+||....+++|.+-. .+.+.+......... +... ....+.+......+.. ..++...
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~-----~~~~-~~VsVGWGkKeTQF~G-s~gK~aa 190 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDD-----FGES-KHVSVGWGKKETQFHG-SAGKAAA 190 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccc-----cCCC-ceeeeccCcccCccCc-chhhhhh
Confidence 357899999999999999999999888764 344444432211000 0000 0000001100000000 0000000
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC---C---CcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM---D---KTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~---D---gtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
.. ...+. ........+. +.+.-..|+|-. +.+|++.+. . ..|+||+-+ |....+- .-.+--.+++
T Consensus 191 ~~-~~~p~----~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~ 263 (928)
T PF04762_consen 191 RQ-LRDPT----VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALS 263 (928)
T ss_pred hh-ccCCC----CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCcc
Confidence 00 00000 0000011233 445667788987 788888874 2 579999987 5444333 2233345789
Q ss_pred EecCCCCEEEEEEC---CCeEEEEeCCCceEEEE----ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 602 FNPMDDDYFISGSL---DAKVRIWSISDRLVVDW----TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 602 fsp~~~~~L~sgs~---Dg~I~IWDl~~~~~~~~----~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
|-| .|++|++... ...|.+|.-+.-+--.+ ......|..+.|++++..||+...|. |.+|-..+.......
T Consensus 264 WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKq 341 (928)
T PF04762_consen 264 WRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQ 341 (928)
T ss_pred CCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEE
Confidence 999 9999988764 34566776544322221 12346799999999999999977555 999998877643333
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC----C--c--------ceEEE-----------------
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG----L--D--------IVHKF----------------- 723 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~----~--~--------~~~~~----------------- 723 (969)
.+.+ .....+..+.|+|..+..|.+.+.++.+..++. . . .....
T Consensus 342 ei~~-----~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPP 416 (928)
T PF04762_consen 342 EIRF-----SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPP 416 (928)
T ss_pred EEEc-----cCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCc
Confidence 2221 223334559999998888888888777766540 0 0 01000
Q ss_pred ----EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 724 ----RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 724 ----~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
....-...|..++|++++..+++-..||.|.+|.....
T Consensus 417 PMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 417 PMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred hHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 11223567899999999988999999999999996553
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-06 Score=92.96 Aligned_cols=165 Identities=15% Similarity=0.249 Sum_probs=113.4
Q ss_pred ccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCC-CcEEEEe---e-----cCCCeEEEEEecCCCCEEEEEECCCeEEE
Q 002086 551 IGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMET-KSCLKLF---A-----HNDYVTCIQFNPMDDDYFISGSLDAKVRI 621 (969)
Q Consensus 551 ~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t-~~~i~~~---~-----h~~~V~sv~fsp~~~~~L~sgs~Dg~I~I 621 (969)
..|+..|.++.++.+...+....|=.|.+|+++- .++.... . -+.-|++..|+|...+.|+-.+..|+|++
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 5799999999999865555566788999999873 3333322 2 34568999999977888999999999999
Q ss_pred EeCCCceEEE----E-------------ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-Cceeeeeeeeeccc--
Q 002086 622 WSISDRLVVD----W-------------TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED-SKLHQLNQVDFQTK-- 681 (969)
Q Consensus 622 WDl~~~~~~~----~-------------~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~~~~~~~~~~~~~~-- 681 (969)
-|++...+.. + ...-..|..+.|+++|+++++-.. -+|++||+.. .+.....++.-...
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence 9998543211 1 111245889999999999998653 5899999943 33333332211000
Q ss_pred c-----cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 682 K-----KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 682 ~-----~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
. ....-.-..++|+.++ ..+++|+.....++++..
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred HHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCC
Confidence 0 0111123457788776 799999999999999943
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=105.51 Aligned_cols=240 Identities=16% Similarity=0.168 Sum_probs=154.5
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
..++++|+.+|..+-|-.|-++++++ ||.|.+||---|..+......
T Consensus 777 QfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da------------------------------- 823 (1034)
T KOG4190|consen 777 QFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA------------------------------- 823 (1034)
T ss_pred eeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC-------------------------------
Confidence 34577899999999999999888876 789999997655443311100
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEE-eCCCcEEEEECCCCcEEEEe------ecCCC
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSS-SMDKTVRLWDMETKSCLKLF------AHNDY 596 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sg-s~DgtV~IWDl~t~~~i~~~------~h~~~ 596 (969)
.-.+-.+.|.|+.-.....++.| +...+|+++|.+.++....+ +.+..
T Consensus 824 -------------------------pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 824 -------------------------PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred -------------------------cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 00122234445443233444444 78999999999988766544 34567
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-CCCEEEEEEccCCCEEEEEeCCCcEEE-EEcCCCceeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-HEMVTAACYTPDGQNALIGSHKGSCRL-YSIEDSKLHQLN 674 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-~~~V~sv~fspdg~~Lasgs~dg~I~I-wDl~~~~~~~~~ 674 (969)
+.+++..+ .++.++++-.+|.|.+.|.++|+++..... ......++ .|..+.++....|.++.+ |-.-++....+.
T Consensus 879 ~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 879 TRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred eeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 89999999 999999999999999999999997753332 22222232 345566776667888887 876665543221
Q ss_pred eeeecccccCCCCCeEEEEEcC-CCCceEEEEeCCCcEEEEeCC------cceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 675 QVDFQTKKKSSTRKITGFQFSP-SNPSEVLVTSADSRIRILDGL------DIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fsp-d~~~~l~sgs~Dg~I~IwD~~------~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
.. ...+.. |-. -| .-+++......+.+|-.. ..+.+++...-.+..++++--|-+.-++.|
T Consensus 957 kp--------ppepah---flqsvg-pSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaG 1024 (1034)
T KOG4190|consen 957 KP--------PPEPAH---FLQSVG-PSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAG 1024 (1034)
T ss_pred CC--------CCcchh---hhhccC-ceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhcc
Confidence 11 111110 111 13 356666666777888521 222333334445667788888877777888
Q ss_pred eCCCcEEE
Q 002086 748 SEDSQVYV 755 (969)
Q Consensus 748 s~Dg~I~I 755 (969)
.+.|.|.+
T Consensus 1025 ne~G~IaL 1032 (1034)
T KOG4190|consen 1025 NEHGAIAL 1032 (1034)
T ss_pred CCCCceee
Confidence 88888875
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-06 Score=95.78 Aligned_cols=290 Identities=17% Similarity=0.245 Sum_probs=164.1
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeC-----------CCcEEEEecccceEEEeecC--CccCcccccccCCCCC
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGE-----------DRVIHVWEVQECEVMSMSEG--NLTPIHPSLCNSSDKA 507 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~-----------DgtVrIWDl~tg~~l~~~~~--~~~~v~~~~~~~~~~~ 507 (969)
+..++.+. |. .|.-+.|||..+||+|-+. ...++|||+.+|.+.+.+.. ......++.-..
T Consensus 241 f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS---- 314 (698)
T KOG2314|consen 241 FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS---- 314 (698)
T ss_pred HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec----
Confidence 33334342 54 4788999999999999763 25799999999998876543 111111111111
Q ss_pred ccCCCCCCCCCcccccCCCCCCCCccccc-ceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC-----CCcEEEE
Q 002086 508 SSLDGSSPNPPPEKKKKGKHSSPDYVHVP-ETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-----DKTVRLW 580 (969)
Q Consensus 508 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-----DgtV~IW 580 (969)
.+.+.............. .....+..+.+ .-..|....|+| +++|+--.. -..+.|.
T Consensus 315 -----------~DdKy~Arm~~~sisIyEtpsf~lld~Ksl-----ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~ 378 (698)
T KOG2314|consen 315 -----------HDDKYFARMTGNSISIYETPSFMLLDKKSL-----KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLM 378 (698)
T ss_pred -----------cCCceeEEeccceEEEEecCceeeeccccc-----CCccccCcccCCCcceEEEEcccccCCcceEEEE
Confidence 011100000000000000 00001111111 235688889999 555554332 1346666
Q ss_pred ECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEE----------ECCCeEEEEeCCCce-EEEEecCCCCEEEEEEccCC
Q 002086 581 DMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISG----------SLDAKVRIWSISDRL-VVDWTDLHEMVTAACYTPDG 648 (969)
Q Consensus 581 Dl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sg----------s~Dg~I~IWDl~~~~-~~~~~~~~~~V~sv~fspdg 648 (969)
.+.+++.+++.. |+-.=..+.|.. ++.+|..- +.-..+-|+.++... .+........|...+|-|.|
T Consensus 379 evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~g 457 (698)
T KOG2314|consen 379 EVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHG 457 (698)
T ss_pred ecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCC
Confidence 666666665442 111112344544 55555432 222346666666543 45666777889999999999
Q ss_pred CEEEEEeC---CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE---eCCCcEEEEeCCcceEE
Q 002086 649 QNALIGSH---KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT---SADSRIRILDGLDIVHK 722 (969)
Q Consensus 649 ~~Lasgs~---dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg---s~Dg~I~IwD~~~~~~~ 722 (969)
+.+++-+. ..++.+|.+.+...... +. ..-.....+.+.|+|.| ++++++ +..|.+.++|+.-....
T Consensus 458 dkF~vi~g~~~k~tvsfY~~e~~~~~~~----lV--k~~dk~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~~k 530 (698)
T KOG2314|consen 458 DKFAVISGNTVKNTVSFYAVETNIKKPS----LV--KELDKKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYADLK 530 (698)
T ss_pred CeEEEEEccccccceeEEEeecCCCchh----hh--hhhcccccceEEEcCCC-cEEEEEEecccccceEEEecchhhhh
Confidence 98876443 45888998874221111 11 12233567789999999 566554 56789999997642222
Q ss_pred EEeecCCCCeEEEEEeCCCCEEEEEeC------CCcEEEEEcCC
Q 002086 723 FRGFRNTSSQISAAFNADGKYIISASE------DSQVYVWKREE 760 (969)
Q Consensus 723 ~~~~~~~~~V~sl~fspdg~~LaSgs~------Dg~I~IWdl~t 760 (969)
...+..+...+.+.|.|.|+|++|++. |.--+||++..
T Consensus 531 ~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 531 DTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred hccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 233333445678899999999999986 45566777764
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.1e-08 Score=108.07 Aligned_cols=245 Identities=13% Similarity=0.206 Sum_probs=161.6
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccc-eEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQEC-EVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
++.+.||+..|..++--.+.+-+++++.|++|++|.+... ..+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~----------------------------------- 772 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG----------------------------------- 772 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc-----------------------------------
Confidence 4568899999999988888889999999999999998631 0000
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS-HLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVT 598 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~-~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~ 598 (969)
......++..|..+|.++.|-.+ .++ ++.||-|.+||.--+..+..+ ...+.+.
T Consensus 773 --------------------tsaCQfTY~aHkk~i~~igfL~~lr~i--~ScD~giHlWDPFigr~Laq~~dapk~~a~~ 830 (1034)
T KOG4190|consen 773 --------------------TSACQFTYQAHKKPIHDIGFLADLRSI--ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGG 830 (1034)
T ss_pred --------------------cceeeeEhhhccCcccceeeeecccee--eeccCcceeecccccchhHhhhcCcccCCCc
Confidence 01122367789999999999863 344 466899999999887776533 2223333
Q ss_pred EEEEecC-CCCEEEE-EECCCeEEEEeCCCceEEEE------ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 002086 599 CIQFNPM-DDDYFIS-GSLDAKVRIWSISDRLVVDW------TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 599 sv~fsp~-~~~~L~s-gs~Dg~I~IWDl~~~~~~~~------~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
.+...+. +...+++ ++...+|+++|.+...-... ...+.-+.+++..+.|++++++-.+|.|.+.|.++++.
T Consensus 831 ~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 831 NIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred eeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence 3333331 2334444 47889999999998754321 22335689999999999999999999999999999986
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE-EeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI-LDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I-wD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
.... .........++ .|.+ +.++....|.++.+ |........+.......+.. -.-.-|.-|+++..
T Consensus 911 INsw--------rpmecdllqla-apsd-q~L~~saldHslaVnWhaldgimh~q~kpppepah--flqsvgpSLV~a~~ 978 (1034)
T KOG4190|consen 911 INSW--------RPMECDLLQLA-APSD-QALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH--FLQSVGPSLVTAQN 978 (1034)
T ss_pred eccC--------Ccccchhhhhc-Cchh-HHHHhhcccceeEeeehhcCCeeeeccCCCCcchh--hhhccCceeEEecc
Confidence 5432 11112222222 2333 67777888888888 87666555554332222211 01123556777776
Q ss_pred CCcEEEEE
Q 002086 750 DSQVYVWK 757 (969)
Q Consensus 750 Dg~I~IWd 757 (969)
...+.+|.
T Consensus 979 Gn~lgVYa 986 (1034)
T KOG4190|consen 979 GNILGVYA 986 (1034)
T ss_pred CcEEEEEe
Confidence 66677775
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.1e-06 Score=96.79 Aligned_cols=185 Identities=17% Similarity=0.214 Sum_probs=146.2
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEee----cCCCeEEEEEe------c-------------CCCCEEEEEECCCeEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFA----HNDYVTCIQFN------P-------------MDDDYFISGSLDAKVRI 621 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~----h~~~V~sv~fs------p-------------~~~~~L~sgs~Dg~I~I 621 (969)
..+++....||.++|||...++....|. -.+..++..|. | .+...++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 6799999999999999999998887772 33444555542 2 13456788889999999
Q ss_pred EeCCCceEEEEe---cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 622 WSISDRLVVDWT---DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 622 WDl~~~~~~~~~---~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
|++..+++...+ .|.+.|.++.++.+-..|.+++.|+.+..|+.......... ......+..++++||+
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~--------~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW--------KEQKPLVSSLCISPDG 156 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee--------ccCCCccceEEEcCCC
Confidence 999999877654 36788999999999999999999999999999888765443 5567788999999997
Q ss_pred CceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCC-----CCEEEEE-eCCCcEEEEEcCC
Q 002086 699 PSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD-----GKYIISA-SEDSQVYVWKREE 760 (969)
Q Consensus 699 ~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspd-----g~~LaSg-s~Dg~I~IWdl~t 760 (969)
..+++++ ++|.+||..+........+|.+.|.++.|..+ |.|++++ ..+..|.+|-++.
T Consensus 157 -~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 157 -KILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -CEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5666664 78999998877666666677888999999876 6676654 4466788998875
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.9e-06 Score=95.25 Aligned_cols=173 Identities=17% Similarity=0.155 Sum_probs=103.5
Q ss_pred EEEEEecC-CcEEEEEeC-----CCcEEEEECCCC---cEEEEeec-CCCeEEEEEecCCCCEEEEEE-CCCeEEEE--e
Q 002086 557 VLDLSWSR-SHLLLSSSM-----DKTVRLWDMETK---SCLKLFAH-NDYVTCIQFNPMDDDYFISGS-LDAKVRIW--S 623 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~-----DgtV~IWDl~t~---~~i~~~~h-~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IW--D 623 (969)
.....|+| ++.|+..+. +..+.+|++..+ +....... .......+|+| ++..|+..+ .+|...|| +
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEE
Confidence 34578999 666665442 334455777653 33444432 23456789999 888777665 46654555 4
Q ss_pred CCC--ceEEEEecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 624 ISD--RLVVDWTDLHEMVTAACYTPDGQNALIGSHK---GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 624 l~~--~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d---g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
+.. +....+......+....|+|||+.|+....+ ..|.+||+.+++..... .....+....|+|++
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt---------~~~~~~~~p~wSpDG 382 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT---------TSPENKESPSWAIDS 382 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc---------CCCCCccceEECCCC
Confidence 432 3344444444567789999999999876543 36999999888754321 112345678999998
Q ss_pred CceEEEEeC--CCcEEEEeCCcceEEEEeecCCCCeEEEEEeCC
Q 002086 699 PSEVLVTSA--DSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 699 ~~~l~sgs~--Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspd 740 (969)
..+++++.. ...|+++|........ .......+...+|+|-
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~g~~~~-Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLITKKTRK-IVIGSGEKRFPSWGAF 425 (428)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCcccCceecCC
Confidence 444444443 3468888865432211 1123334556677764
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-06 Score=90.48 Aligned_cols=251 Identities=20% Similarity=0.344 Sum_probs=163.0
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
..+-|+++.|...|.||+||...|.|.++.-....--.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ce------------------------------------------ 62 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCE------------------------------------------ 62 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccc------------------------------------------
Confidence 35679999999999999999999999999754311000
Q ss_pred CCcccccceeeecCCCceeEecc------------CCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc--------
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIG------------HLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS-------- 586 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~g------------H~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~-------- 586 (969)
.+.+..+++ -...|..+.|.. ...++..+.|++|++|.+....
T Consensus 63 --------------ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nn 128 (460)
T COG5170 63 --------------YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENN 128 (460)
T ss_pred --------------hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccc
Confidence 000001111 234577888875 3678888999999999874320
Q ss_pred -----------------------------EE-----EEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc---
Q 002086 587 -----------------------------CL-----KLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--- 627 (969)
Q Consensus 587 -----------------------------~i-----~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--- 627 (969)
.+ +++ .|...|.++.|+. +...++++ .|-.|.+|++.--
T Consensus 129 ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~s 206 (460)
T COG5170 129 LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDGS 206 (460)
T ss_pred cccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCCc
Confidence 00 011 4777789999987 66666654 5788999998642
Q ss_pred -eEEEEecCC-----CCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeee------eee--ecccccCCCCCeEEE
Q 002086 628 -LVVDWTDLH-----EMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLN------QVD--FQTKKKSSTRKITGF 692 (969)
Q Consensus 628 -~~~~~~~~~-----~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~------~~~--~~~~~~~h~~~It~l 692 (969)
.++....+. .-|++..|+|.. ..+.-.+..|.|++-|++...+.... .+. -......-...|..+
T Consensus 207 FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~ 286 (460)
T COG5170 207 FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDF 286 (460)
T ss_pred eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcce
Confidence 344444444 458899999964 56667888999999999854332110 000 000112334678899
Q ss_pred EEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeec----------CCCCe---EEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 693 QFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFR----------NTSSQ---ISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 693 ~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~----------~~~~V---~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
.|++.| .+++ +-.--+|+|||... ++.+...|. ....| ..+.|+-|.+.+++|+.....-||
T Consensus 287 kFs~ng-ryIl-sRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 287 KFSDNG-RYIL-SRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred EEcCCC-cEEE-EeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 999987 4444 44456899999653 333322221 11122 357899999999999999999999
Q ss_pred EcCC
Q 002086 757 KREE 760 (969)
Q Consensus 757 dl~t 760 (969)
-+.+
T Consensus 365 p~~s 368 (460)
T COG5170 365 PTDS 368 (460)
T ss_pred cccc
Confidence 8665
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-05 Score=81.47 Aligned_cols=189 Identities=14% Similarity=0.129 Sum_probs=129.6
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecC--CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc--eEEE--EecCCCCE
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLFAHN--DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--LVVD--WTDLHEMV 639 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~--~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~--~~~~~~~V 639 (969)
..+..++.|.++++.++..+...... |. -.+.++++++ ++.++++.+....|..|.+... .++. .....+.-
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~g 206 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHG 206 (344)
T ss_pred cceeeccCCcceeEEEEecCccccee-eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCc
Confidence 34667788888888888755433322 32 2388999999 9999999999999999998653 2222 22333556
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE-EEeCCCcEEEEeCCc
Q 002086 640 TAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL-VTSADSRIRILDGLD 718 (969)
Q Consensus 640 ~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~-sgs~Dg~I~IwD~~~ 718 (969)
.+..|+.....+|++..||++.|||++........ .......|.+.+..+.|++.|..-|+ ..-.-+.+.+.|+++
T Consensus 207 F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~---~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 207 FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE---ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred eeeeeccCcceEEEEecCCcEEEEEecccccchhh---hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 78899999999999999999999999976543221 22233568899999999987654444 444456788999776
Q ss_pred ceEEEEe-------ecC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 719 IVHKFRG-------FRN-TSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 719 ~~~~~~~-------~~~-~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
....... ..+ ...|....|+.++.-+.+.+++ .+.=|++.+
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 4322111 111 2336777788777766666654 456677665
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-05 Score=80.42 Aligned_cols=189 Identities=17% Similarity=0.248 Sum_probs=118.4
Q ss_pred EEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-------ecCCCeEEEEEecCC-----CCEEEEEECCCeEEEEe
Q 002086 557 VLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-------AHNDYVTCIQFNPMD-----DDYFISGSLDAKVRIWS 623 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-------~h~~~V~sv~fsp~~-----~~~L~sgs~Dg~I~IWD 623 (969)
=.-++|+| +.+||.+...|+|+++|+....+...- .....|..|.|.+.. ...|++-..+|.++-|-
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 35799999 788999999999999999865443221 234567888886522 23677778888888777
Q ss_pred CCCc------e--EEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE
Q 002086 624 ISDR------L--VVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF 694 (969)
Q Consensus 624 l~~~------~--~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f 694 (969)
+..+ + .+.+.. ....|.++.|+|..++|++|+.... .++. .......+++-..
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~------------s~a~~~GLtaWRi 187 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM------------SKASSCGLTAWRI 187 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc------------ccccccCceEEEE
Confidence 6322 1 112222 3468999999999998888764322 0000 0222334555444
Q ss_pred cCCCCceEEEEeCCCcE-------EEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 695 SPSNPSEVLVTSADSRI-------RILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 695 spd~~~~l~sgs~Dg~I-------~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
-.+.+.+..+...+..+ -+|.+.....-.........|..|+.||||..||+...+|.|.+|++.+-+.
T Consensus 188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred cCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 44444444444332222 2232221111111123456789999999999999999999999999988543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00039 Score=75.12 Aligned_cols=219 Identities=14% Similarity=0.113 Sum_probs=144.4
Q ss_pred EEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCccc
Q 002086 456 TIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVH 534 (969)
Q Consensus 456 ~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 534 (969)
++.|.+ ++.++++--..+.|..|+..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~---------------------------------------------- 37 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI---------------------------------------------- 37 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE----------------------------------------------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE----------------------------------------------
Confidence 577887 777777777788899999887654321
Q ss_pred ccceeeecCCCceeEeccCCCCEEEEEec-CCcEEEEEeCCCcEEEEECCCCcEEEEee------cCCCeEEEEEecCCC
Q 002086 535 VPETVFSLSEKPFCSFIGHLDDVLDLSWS-RSHLLLSSSMDKTVRLWDMETKSCLKLFA------HNDYVTCIQFNPMDD 607 (969)
Q Consensus 535 ~~~~v~~~~~k~~~~l~gH~~~I~~l~fs-~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~------h~~~V~sv~fsp~~~ 607 (969)
. ......+.+. ++..|+.+...+. .++|..+++...... .....+.+++.+ ++
T Consensus 38 ----------------~--~~~~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G 97 (246)
T PF08450_consen 38 ----------------D--LPGPNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DG 97 (246)
T ss_dssp ----------------E--SSSEEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS
T ss_pred ----------------e--cCCCceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CC
Confidence 0 1115666776 5677777776554 555999987665553 235688999999 88
Q ss_pred CEEEEEECC--------CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCce--eeeeee
Q 002086 608 DYFISGSLD--------AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNAL-IGSHKGSCRLYSIEDSKL--HQLNQV 676 (969)
Q Consensus 608 ~~L~sgs~D--------g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~La-sgs~dg~I~IwDl~~~~~--~~~~~~ 676 (969)
++.++.... |.|..++.. +++......-...+.|+|+|+++.|+ +-+..+.|..|++..... .....+
T Consensus 98 ~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~ 176 (246)
T PF08450_consen 98 NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF 176 (246)
T ss_dssp -EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE
T ss_pred CEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeE
Confidence 877776644 568888888 66655555556789999999999776 556788999999864332 211111
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEe-CCCCEEEEE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFN-ADGKYIISA 747 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fs-pdg~~LaSg 747 (969)
.......+..-.+++..+| .++++....+.|.+++.... ...+... ...+++++|. ++.+.|+..
T Consensus 177 ---~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 177 ---IDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPDGKLLREIELP--VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ---EE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEEEE-S--SSSEEEEEEESTTSSEEEEE
T ss_pred ---EEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCCccEEEEEcCC--CCCEEEEEEECCCCCEEEEE
Confidence 1112222457889999988 67777778899999996633 2323322 3478999994 665555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.1e-07 Score=67.79 Aligned_cols=38 Identities=37% Similarity=0.633 Sum_probs=36.4
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWD 479 (969)
+++++|++|.+.|++|+|+|++.+|+||+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.5e-06 Score=87.37 Aligned_cols=182 Identities=15% Similarity=0.236 Sum_probs=113.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEE-e--ecCCCeEEEEEecCCCCEEEEEEC-----CCeEEEEeCCCceEE-EEecC
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKL-F--AHNDYVTCIQFNPMDDDYFISGSL-----DAKVRIWSISDRLVV-DWTDL 635 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~-~--~h~~~V~sv~fsp~~~~~L~sgs~-----Dg~I~IWDl~~~~~~-~~~~~ 635 (969)
++.++++..||.+.+++.+.-..+.. . .|.+... .++.. .++.+.++.. -+..+.|+++-.+.+ .....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as-~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~ 178 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSAS-RKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA 178 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccc-cceee-cccEEecCCcceEeeccceeeecccccccccccccc
Confidence 78899999999999999876211110 0 1222111 11221 2344443321 234566666543322 12222
Q ss_pred CCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE
Q 002086 636 HEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 636 ~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw 714 (969)
...|++++-+|..+ .+++|+.||.+-+||.+.... .....+.|..+|..+-|+|.++..|++++.||.+..|
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-------p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-------PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccc-------hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 24499999999654 566789999999999998743 2223478999999999999999999999999999999
Q ss_pred eCCcceEEEE----------------------eecC--CCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 715 DGLDIVHKFR----------------------GFRN--TSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 715 D~~~~~~~~~----------------------~~~~--~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
|......... .... ...|. .|.--|..|++|+.-+-|++++
T Consensus 252 das~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 252 DASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSIN--SFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCCCceEEecCccccccccccCCcccceEeeeccccccceeee--eeeccCceEEeccccceEEEec
Confidence 9542111110 0000 01111 3444577888888888888865
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00021 Score=79.77 Aligned_cols=175 Identities=17% Similarity=0.198 Sum_probs=133.2
Q ss_pred EecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC-eEEEEeCCCceEEEEecCCCCE
Q 002086 561 SWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA-KVRIWSISDRLVVDWTDLHEMV 639 (969)
Q Consensus 561 ~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg-~I~IWDl~~~~~~~~~~~~~~V 639 (969)
+..++++++..|. |.+.|.+...+-.++ ++|.+.|.-..+.- +++-++.|..|| .|-|||..++++......-+.|
T Consensus 328 a~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I 404 (668)
T COG4946 328 AVVNGDYIALVSR-GKAFIMRPWDGYSIQ-VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNI 404 (668)
T ss_pred ccCCCcEEEEEec-CcEEEECCCCCeeEE-cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccce
Confidence 3344778777775 566677665554443 46777788888887 777899999999 8999999999999988888999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC----cEEEEe
Q 002086 640 TAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS----RIRILD 715 (969)
Q Consensus 640 ~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg----~I~IwD 715 (969)
.++..+++|++++++-....|.++|+.++...... +...+-|+.+.|+|++ .+++-+--+| .|+++|
T Consensus 405 ~av~vs~dGK~~vvaNdr~el~vididngnv~~id--------kS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 405 EAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID--------KSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred EEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec--------ccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEe
Confidence 99999999999999999999999999999865432 4556789999999987 7888775544 589999
Q ss_pred CCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 716 GLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
...... +........=.+-+|.||+++|.--+
T Consensus 476 m~~~Ki-y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 476 MDGGKI-YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCCCeE-EEecCCcccccCcccCCCCcEEEEEe
Confidence 665322 22222223334668999999876544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00017 Score=80.40 Aligned_cols=245 Identities=11% Similarity=0.172 Sum_probs=162.6
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCC-cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDR-VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~Dg-tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++...
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr---------------------------------------- 396 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR---------------------------------------- 396 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE----------------------------------------
Confidence 6778888888888888888888888 88889888766433
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecC
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPM 605 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~ 605 (969)
+.+.-+.|.++..++ +++++.+-....|.+.|+.++.....- ...+-|+.++|+|
T Consensus 397 ----------------------~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~- 453 (668)
T COG4946 397 ----------------------IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP- 453 (668)
T ss_pred ----------------------eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-
Confidence 334557789999999 688999999999999999999876554 5667899999999
Q ss_pred CCCEEEEEECCC----eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-------CCcEEEEEcCCCceeeee
Q 002086 606 DDDYFISGSLDA----KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-------KGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 606 ~~~~L~sgs~Dg----~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-------dg~I~IwDl~~~~~~~~~ 674 (969)
+..+|+-+--+| .|+++|+.++++.........=.+-+|.|++++|..-+. |..+.-+.... .....
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~--vskPy 531 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQR--VSKPY 531 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEee--eccce
Confidence 888888776554 589999999999888777766677889999998765443 33222222211 00000
Q ss_pred eeeec-------------cccc-------CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC---------------cc
Q 002086 675 QVDFQ-------------TKKK-------SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL---------------DI 719 (969)
Q Consensus 675 ~~~~~-------------~~~~-------~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~---------------~~ 719 (969)
.+.+. .... +-...+.-+-..+ +....+++-.++.|.++... ..
T Consensus 532 lv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee-~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~ 610 (668)
T COG4946 532 LVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEE-GDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGR 610 (668)
T ss_pred EEEecCCCCChhhcCchhcCccccceehhhhcccccccccCc-cceeEeeecCCCeEEEEEeeccchhhhhhcCCCccce
Confidence 00000 0000 0001111111112 22345556666667666510 01
Q ss_pred eEEEEee-----cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 720 VHKFRGF-----RNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 720 ~~~~~~~-----~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..++... .-...+.++..|+|++.|+. -.||.+++++++.
T Consensus 611 l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 611 LEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred EEEEecchhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 1111111 12345788999999999988 7899999999987
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00012 Score=85.54 Aligned_cols=190 Identities=9% Similarity=0.121 Sum_probs=123.4
Q ss_pred CEEEEEecC-CcE-EEEEeC---CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEE-EECC--CeEEEEeCCCc
Q 002086 556 DVLDLSWSR-SHL-LLSSSM---DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFIS-GSLD--AKVRIWSISDR 627 (969)
Q Consensus 556 ~I~~l~fs~-~~~-L~Sgs~---DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~s-gs~D--g~I~IWDl~~~ 627 (969)
.+..-.|+| ++. ++..+. +..|.++|+.+++........+.+....|+| ++..++. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 778899999 553 554443 3569999999998877766667777889999 8876654 3333 46888899888
Q ss_pred eEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 628 LVVDWTDLHEMVTAACYTPDGQNALIGSH-KG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 628 ~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
....+...........|+|||+.|+..+. .+ .|+++|+.+++..... . .+. ....|+|++...+++
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt---~----~g~----~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV---F----HGK----NNSSVSTYKNYIVYS 336 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc---c----CCC----cCceECCCCCEEEEE
Confidence 77666555544456789999998887664 23 6888888877653221 0 111 124899999544444
Q ss_pred EeCC--------CcEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcCC
Q 002086 705 TSAD--------SRIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKYIISASEDS---QVYVWKREE 760 (969)
Q Consensus 705 gs~D--------g~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg---~I~IWdl~t 760 (969)
.... ..|++.|..... ..+... .......|+|||+.|+-.+.++ .|.+.+++.
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIRRLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeEECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 4332 367888854332 222211 1223578999999887665432 366667654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0002 Score=76.46 Aligned_cols=190 Identities=18% Similarity=0.129 Sum_probs=122.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe-cCC----CCE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT-DLH----EMV 639 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-~~~----~~V 639 (969)
++.+++++.++.|..||..+|+.+..+.....+...... .+..++++..++.|+.+|..+++++... ... ...
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 678888899999999999999998877544443332222 4677777788899999999999877652 211 112
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC---CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 640 TAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS---STRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 640 ~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~---h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
........+..++++..++.|..+|+.+++........... ... ....+..-....++ .++++..++.+..+|.
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d~ 190 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR-GSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVDL 190 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEEET
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC-CCcceeeecccccceEEECC--EEEEEcCCCeEEEEEC
Confidence 23333334888999999999999999999876544321100 000 01112222232233 7777777876444488
Q ss_pred CcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 717 LDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 717 ~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
.+........ ...+.. ....++..|+.++.++.|.+||+.+++
T Consensus 191 ~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 191 ATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp TTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 7766555332 222222 245678888888899999999999943
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.6e-05 Score=87.83 Aligned_cols=188 Identities=12% Similarity=0.069 Sum_probs=117.1
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEE----
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVT---- 640 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~---- 640 (969)
+..++.++.++.|..+|..+|+.+........+.+.-.. .+..++.+..+|.|+.||.++++.+-.........
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 577888899999999999999988776544444332222 35677778889999999999998765544332211
Q ss_pred --EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC--CCCceEEEEeCCCcEEEEeC
Q 002086 641 --AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP--SNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 641 --sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp--d~~~~l~sgs~Dg~I~IwD~ 716 (969)
...+ .+..++++..+|.+..+|..+++............ ......+..+.-+| .+ ..+++++.++.++.||.
T Consensus 183 ~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g-~~~~~~~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 183 SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG-RTELERLVDVDGDPVVDG-GQVYAVSYQGRVAALDL 258 (377)
T ss_pred CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCC-CCchhhhhccCCccEEEC-CEEEEEEcCCEEEEEEC
Confidence 1111 13477888889999999999887643322110000 00000000000011 12 47888889999999997
Q ss_pred CcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 717 LDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 717 ~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
.+......... . ..... ..++..|+.++.||.|+.+|..+++
T Consensus 259 ~tG~~~W~~~~-~-~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 259 RSGRVLWKRDA-S-SYQGP--AVDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred CCCcEEEeecc-C-CccCc--eEeCCEEEEECCCCeEEEEECCCCc
Confidence 66544443321 1 11112 2356788888899999999998843
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-05 Score=91.99 Aligned_cols=260 Identities=15% Similarity=0.196 Sum_probs=172.6
Q ss_pred ccccccceeeeEecccccCEEEEEEeCC------C------CEEEEEeCCCcEEEEecccceEEEeecCCccCccccccc
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLD------A------RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCN 502 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpD------g------~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~ 502 (969)
+.|-.++++++.+.-|...|+.+.|.|- + -+||++...|.|.|||...+..+.
T Consensus 39 VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~--------------- 103 (1062)
T KOG1912|consen 39 VVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN--------------- 103 (1062)
T ss_pred EEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh---------------
Confidence 4466778889999999999999999872 1 267888888999999987644322
Q ss_pred CCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC----C-cEEEEEeCCCcE
Q 002086 503 SSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR----S-HLLLSSSMDKTV 577 (969)
Q Consensus 503 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~----~-~~L~Sgs~DgtV 577 (969)
.+..|.++|.+++|-+ . ..|++-..-.+|
T Consensus 104 ----------------------------------------------~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~l 137 (1062)
T KOG1912|consen 104 ----------------------------------------------WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTL 137 (1062)
T ss_pred ----------------------------------------------hhcCCCcchhheeeeeccCcchheeEEecCCcEE
Confidence 4556788889999976 2 577777888999
Q ss_pred EEEECCCCcEEEEeecC-CCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-------ceEEEEec-CCC-----------
Q 002086 578 RLWDMETKSCLKLFAHN-DYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-------RLVVDWTD-LHE----------- 637 (969)
Q Consensus 578 ~IWDl~t~~~i~~~~h~-~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-------~~~~~~~~-~~~----------- 637 (969)
.+|+..+|+....+... ....|+.+.|.+...|..-+..|.|.+-+.-. ++.+++.. |.+
T Consensus 138 vLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ 217 (1062)
T KOG1912|consen 138 VLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATG 217 (1062)
T ss_pred EEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcc
Confidence 99999999988777433 45667999998888888888888888777532 22222211 111
Q ss_pred ------C--------EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC-ceE
Q 002086 638 ------M--------VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP-SEV 702 (969)
Q Consensus 638 ------~--------V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~-~~l 702 (969)
+ ...++|+|.-+.++.......+.|+|++-........+ ..+.+.-+.+-|+.. ..|
T Consensus 218 ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi--------er~~akfv~vlP~~~rd~L 289 (1062)
T KOG1912|consen 218 NSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI--------ERGGAKFVDVLPDPRRDAL 289 (1062)
T ss_pred ccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe--------ccCCcceeEeccCCCcceE
Confidence 0 12356788777677777788899999987766554433 123334455666542 468
Q ss_pred EEEeCCCcEEEEeCCcceEEEE------------------eecCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCCc
Q 002086 703 LVTSADSRIRILDGLDIVHKFR------------------GFRNTSSQISAAFNAD-GKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~~~~~~------------------~~~~~~~V~sl~fspd-g~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
++...||.+.||-.+.....++ ......++ .....|. ...++.--.+|.+.+|.+.+++.
T Consensus 290 fclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~-~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 290 FCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV-IGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred EEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccc-eeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 8889999999997433222111 11111111 2222333 33444444578899999997554
Q ss_pred c
Q 002086 764 A 764 (969)
Q Consensus 764 ~ 764 (969)
.
T Consensus 369 ~ 369 (1062)
T KOG1912|consen 369 H 369 (1062)
T ss_pred C
Confidence 3
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00015 Score=83.63 Aligned_cols=180 Identities=14% Similarity=0.111 Sum_probs=113.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeE------EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCC
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVT------CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEM 638 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~------sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~ 638 (969)
++.++.++.++.|..||..+|+.+..+....... +..+ .+..++.+..+|.+..+|+.+++.+........
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~ 221 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALP 221 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccC
Confidence 4677778889999999999999887664433221 1122 235778888899999999999876543221100
Q ss_pred --------EEEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 639 --------VTAACYTP--DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 639 --------V~sv~fsp--dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
...+.-+| .+..+++++.+|.++.||..+++....... . ....... .+ ..+++++.+
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~------~----~~~~p~~--~~-~~vyv~~~~ 288 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA------S----SYQGPAV--DD-NRLYVTDAD 288 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc------C----CccCceE--eC-CEEEEECCC
Confidence 00010111 356788888999999999998876433210 1 1111222 23 578888899
Q ss_pred CcEEEEeCCcceEEEEeecC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 709 SRIRILDGLDIVHKFRGFRN-TSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 709 g~I~IwD~~~~~~~~~~~~~-~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
|.|+.+|..+.......... .....+... .+.+|++++.+|.|++||..+++
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 99999997665444332111 111112222 46789999999999999998843
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00014 Score=82.09 Aligned_cols=239 Identities=13% Similarity=0.134 Sum_probs=150.0
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
+..-.-++..++|||.|++|++....+ |.+|.......+..+
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~------------------------------------- 69 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF------------------------------------- 69 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhheeee-------------------------------------
Confidence 344566899999999999999987766 889987654332211
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC---------------CcEEEEECCCCcEEEE
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---------------KTVRLWDMETKSCLKL 590 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---------------gtV~IWDl~t~~~i~~ 590 (969)
-...|..+.|+| +.+|.+-+.. ..+.+||+.++..+..
T Consensus 70 --------------------------~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~s 123 (561)
T COG5354 70 --------------------------RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFS 123 (561)
T ss_pred --------------------------ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEee
Confidence 113455666666 5666665433 3599999999999988
Q ss_pred ee-cCCC--eE-EEEEecCCCCEEEEEECCCeEEEEeCCCceEE--EEecC-CCCEEEEEEccCCC--EEEE-----EeC
Q 002086 591 FA-HNDY--VT-CIQFNPMDDDYFISGSLDAKVRIWSISDRLVV--DWTDL-HEMVTAACYTPDGQ--NALI-----GSH 656 (969)
Q Consensus 591 ~~-h~~~--V~-sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~--~~~~~-~~~V~sv~fspdg~--~Las-----gs~ 656 (969)
+. ...+ .+ -+.|+- ++.+++=. ....++|+++ +..+. .+... ...|....|+|.++ .|+. +..
T Consensus 124 f~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~k 200 (561)
T COG5354 124 FNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNK 200 (561)
T ss_pred ccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCC
Confidence 83 2222 44 677876 66655443 3456999997 33222 12222 25688889999643 3443 455
Q ss_pred CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe----------CCCcEEEEeCCcceEEEEee
Q 002086 657 KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS----------ADSRIRILDGLDIVHKFRGF 726 (969)
Q Consensus 657 dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs----------~Dg~I~IwD~~~~~~~~~~~ 726 (969)
.+.++||.+..+.......+- ...=..+.|.+.|..+++..- ....++|+++.+.......
T Consensus 201 pa~~~i~sIp~~s~l~tk~lf--------k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~- 271 (561)
T COG5354 201 PAMVRILSIPKNSVLVTKNLF--------KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK- 271 (561)
T ss_pred CcEEEEEEccCCCeeeeeeeE--------eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-
Confidence 778999999866654433221 111234667777743333221 2355788886643322222
Q ss_pred cCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEEcCCC
Q 002086 727 RNTSSQISAAFNADGKYIISAS--EDSQVYVWKREEH 761 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs--~Dg~I~IWdl~t~ 761 (969)
...++|...+|.|+++.+++.+ .+-.+-++|++..
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 4467899999999888766554 5777888888753
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00016 Score=93.48 Aligned_cols=201 Identities=14% Similarity=0.188 Sum_probs=131.7
Q ss_pred EEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeec---------------CCCeEEEEEecCCCCEEEEE-ECCCeE
Q 002086 558 LDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAH---------------NDYVTCIQFNPMDDDYFISG-SLDAKV 619 (969)
Q Consensus 558 ~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h---------------~~~V~sv~fsp~~~~~L~sg-s~Dg~I 619 (969)
..+++++ +.++++-+..+.|++||... ..+..++- -.....|++++ +++.|+++ ...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 3567765 55777778889999999864 44444421 12358899998 67765554 445789
Q ss_pred EEEeCCCceEEEEecC-----------------CCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc-
Q 002086 620 RIWSISDRLVVDWTDL-----------------HEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT- 680 (969)
Q Consensus 620 ~IWDl~~~~~~~~~~~-----------------~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~- 680 (969)
+++|+.++.+..+.+. -.....++|+| ++..+++...++.|++||..++.......-....
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 9999988776544221 12346899999 5556667778899999999877543211000000
Q ss_pred -----cccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-Ee-----------ec---------CCCCeEE
Q 002086 681 -----KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-RG-----------FR---------NTSSQIS 734 (969)
Q Consensus 681 -----~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-~~-----------~~---------~~~~V~s 734 (969)
...........++|+|++..++++-+.++.|++||........ .+ +. .......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 0011223567799999985567777888999999965432111 10 00 0112357
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 735 AAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 735 l~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
++|+++|.++++-..++.|++||..+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCC
Confidence 89999999999999999999999986
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0011 Score=74.85 Aligned_cols=180 Identities=12% Similarity=0.086 Sum_probs=106.2
Q ss_pred CCCcEEEEECCCCcEEEEeec--------CCCeEEEEEecCCCCEEEEEE-C-CCeEEEEeCCCceEEEEecCCCCEEEE
Q 002086 573 MDKTVRLWDMETKSCLKLFAH--------NDYVTCIQFNPMDDDYFISGS-L-DAKVRIWSISDRLVVDWTDLHEMVTAA 642 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h--------~~~V~sv~fsp~~~~~L~sgs-~-Dg~I~IWDl~~~~~~~~~~~~~~V~sv 642 (969)
.+..|.+||..+.+.+..+.. ......++++| ++++|++.. . +..|.+.|+.+++++......+...-.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy 153 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF 153 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence 588999999999999987743 23345889999 898888766 3 689999999999988877665544444
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc--cccCCCCCeEEEEEcC-CCCceEEEEeCCCcEEEEeCCcc
Q 002086 643 CYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT--KKKSSTRKITGFQFSP-SNPSEVLVTSADSRIRILDGLDI 719 (969)
Q Consensus 643 ~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~--~~~~h~~~It~l~fsp-d~~~~l~sgs~Dg~I~IwD~~~~ 719 (969)
..+.+..+ +-+.||......+.+..........+.. ...-...+ .|.+ ++ .++.+... |+|++.|....
T Consensus 154 ~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg-~~~~vs~e-G~V~~id~~~~ 225 (352)
T TIGR02658 154 PTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSG-RLVWPTYT-GKIFQIDLSSG 225 (352)
T ss_pred EecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCC-cEEEEecC-CeEEEEecCCC
Confidence 44333322 2234555544444332221111111100 00001122 3455 55 66666666 99999994321
Q ss_pred ----eEEEEee--------cCCCCeEEEEEeCCCCEEEEEeC----------CCcEEEEEcCCC
Q 002086 720 ----VHKFRGF--------RNTSSQISAAFNADGKYIISASE----------DSQVYVWKREEH 761 (969)
Q Consensus 720 ----~~~~~~~--------~~~~~V~sl~fspdg~~LaSgs~----------Dg~I~IWdl~t~ 761 (969)
...+... -......-+++++++++|+.... .+.|.++|..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 226 DAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred cceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 1111111 12233334899999998887531 246888888773
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.1e-05 Score=79.19 Aligned_cols=197 Identities=13% Similarity=0.024 Sum_probs=133.3
Q ss_pred EEEecC------CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 559 DLSWSR------SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 559 ~l~fs~------~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
.+.|.| ..+|+.|+.-|...+|...+.+....+ .|...|+-+.=.-.....+..++.|.++++.++..+...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 455655 368999999999999999977654333 344433322211112345677888999999988765332
Q ss_pred EEecCC-CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 631 DWTDLH-EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 631 ~~~~~~-~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
...... -.+.+++++++++++++.+....|..|.+......... + ........-.+..|+..+ ..++++..||
T Consensus 152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~----~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg 225 (344)
T KOG4532|consen 152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-I----YEAPTSDHGFYNSFSEND-LQFAVVFQDG 225 (344)
T ss_pred ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-e----EecccCCCceeeeeccCc-ceEEEEecCC
Confidence 211111 23789999999999999999999999999865432222 1 112334445667788876 7999999999
Q ss_pred cEEEEeCCcceEEE-----EeecCCCCeEEEEEeCCCC--EEEEEeCCCcEEEEEcCCC
Q 002086 710 RIRILDGLDIVHKF-----RGFRNTSSQISAAFNADGK--YIISASEDSQVYVWKREEH 761 (969)
Q Consensus 710 ~I~IwD~~~~~~~~-----~~~~~~~~V~sl~fspdg~--~LaSgs~Dg~I~IWdl~t~ 761 (969)
++.|||++...... ....|.+.+..+.|++-|. +|+-.-.-+.+.+-|+++.
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 99999976532211 2234788899999998653 4555555678999999884
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.7e-06 Score=87.19 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=63.3
Q ss_pred CEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 556 DVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 556 ~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
.|.+++-+| .+.+++|+.||.|-+||++.......+ .|+.+|+.+.|+|.++..|++++.||.+..||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 488899888 688999999999999999988554433 89999999999999999999999999999999875
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.4e-06 Score=91.65 Aligned_cols=205 Identities=13% Similarity=0.152 Sum_probs=147.7
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEE---Ee-ecCCCeEEEEEecCCCCEEEEEEC-CCeEEEEeCCCc
Q 002086 553 HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLK---LF-AHNDYVTCIQFNPMDDDYFISGSL-DAKVRIWSISDR 627 (969)
Q Consensus 553 H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~---~~-~h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl~~~ 627 (969)
|.+.|+.+.....+++++++.||.++.|.-..-.-+. .+ .|...|.+++.+- ++.++.+++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeecc
Confidence 8888888888778999999999999999876522222 22 6888899999988 8889999777 999999999876
Q ss_pred eEEEEecCCCCEEEEEEcc-CC---CEEEE-EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 628 LVVDWTDLHEMVTAACYTP-DG---QNALI-GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 628 ~~~~~~~~~~~V~sv~fsp-dg---~~Las-gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
..+.........-.++|.. .| ..|++ .-.+|.|.|+|-....+. .......|..+|.++.+.+.+ ..+
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q------~~~fkklH~sPV~~i~y~qa~-Ds~ 159 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ------DGYFKKLHFSPVKKIRYNQAG-DSA 159 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc------cceecccccCceEEEEeeccc-cce
Confidence 5543333332222222322 22 13443 336789999998765432 122336789999999999988 678
Q ss_pred EEEeCCCcEEEEeCCcceE---------------EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccC
Q 002086 703 LVTSADSRIRILDGLDIVH---------------KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAS 765 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~~~---------------~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~ 765 (969)
++....|.|..|......+ .+..........++.|+|+|..+.+-+.|..|+++++.+++.++
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 8888889999998552110 11112234556789999999999999999999999999976543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.9e-06 Score=97.23 Aligned_cols=237 Identities=19% Similarity=0.251 Sum_probs=157.3
Q ss_pred ccCcceEEEccCCCc-cccccc---ceeeeEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCcc
Q 002086 420 NVSNHWVKVRQSGKS-YKDLSA---LHLCQEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLT 494 (969)
Q Consensus 420 ~~~~~~v~v~~~~~~-l~dl~~---~~l~~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~ 494 (969)
.....|+..+...+. +|.|.. ...-..|.||..+|+.+-|.|... .|+|++.|-.|..||+..-..
T Consensus 79 ~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--------- 149 (1081)
T KOG0309|consen 79 PAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--------- 149 (1081)
T ss_pred CCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---------
Confidence 345566665554443 444432 233445889999999999999655 899999999999999874211
Q ss_pred CcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC
Q 002086 495 PIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM 573 (969)
Q Consensus 495 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~ 573 (969)
++..+..-...-..|+|+- +..+++.+.
T Consensus 150 ---------------------------------------------------p~ys~~~w~s~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 150 ---------------------------------------------------PFYSTSSWRSAASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred ---------------------------------------------------ceeeeecccccCceeeecccCcchhhhcc
Confidence 1112222233445678876 667777888
Q ss_pred CCcEEEEECCCCcE-EEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCCC
Q 002086 574 DKTVRLWDMETKSC-LKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDGQ 649 (969)
Q Consensus 574 DgtV~IWDl~t~~~-i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg~ 649 (969)
.+.|++||.+.|.. +..+ +|...|+.++|+......+.+++.||+|+.||.... +.........+|..-+|.|-|+
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 88999999998763 3333 789999999998866778999999999999998653 3344555567788888888665
Q ss_pred EEEEEeC--CCcEEEEEcCCCceeee--eeeeecccccCCCCCeEEEEEcCCC---------CceEEEEeCCCcEEEEeC
Q 002086 650 NALIGSH--KGSCRLYSIEDSKLHQL--NQVDFQTKKKSSTRKITGFQFSPSN---------PSEVLVTSADSRIRILDG 716 (969)
Q Consensus 650 ~Lasgs~--dg~I~IwDl~~~~~~~~--~~~~~~~~~~~h~~~It~l~fspd~---------~~~l~sgs~Dg~I~IwD~ 716 (969)
-.++--. +..+.+++.++...... ..........+|...|..+.|-..+ ...|++-+.|..+++|-+
T Consensus 259 g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 259 GYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred eeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence 4443221 22455555444322100 0001223346788888777765432 246888999999999963
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2e-06 Score=92.21 Aligned_cols=151 Identities=14% Similarity=0.194 Sum_probs=117.0
Q ss_pred EEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 611 ISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 611 ~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
++.+.+..|-+-|+.++....+. ....|.++.|...+++++.|+.+|.|..+|++....-.. .....--|...|+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~----~~a~rlyh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG----WCAQRLYHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC----cceEEEEcCcchh
Confidence 56667788999999888665554 667799999999999999999999999999987632111 1111145788899
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCc-----ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLD-----IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAS 765 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~-----~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~ 765 (969)
+++.-....++|++.+.+|.|.+||.+- .+..+++|.+...-.-+-..+....+++++.|...+||.++.+..+.
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 9887774458999999999999999653 36677888776665666677888899999999999999999865544
Q ss_pred C
Q 002086 766 T 766 (969)
Q Consensus 766 t 766 (969)
+
T Consensus 383 t 383 (425)
T KOG2695|consen 383 T 383 (425)
T ss_pred c
Confidence 3
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.9e-05 Score=88.77 Aligned_cols=249 Identities=14% Similarity=0.201 Sum_probs=158.9
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
...++.+-++|.||.+.|.-+.|+...+.|-|...+|.|.||-+-.|.-....-
T Consensus 57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi-------------------------- 110 (1189)
T KOG2041|consen 57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI-------------------------- 110 (1189)
T ss_pred cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh--------------------------
Confidence 344556678899999999999999999999999999999999876543211000
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHND 595 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~ 595 (969)
-.-..+-|.+++|+- |..++..-.||.|.+=.+........--...
T Consensus 111 ---------------------------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~ 157 (1189)
T KOG2041|consen 111 ---------------------------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ 157 (1189)
T ss_pred ---------------------------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh
Confidence 001234577888876 7788888888888776665443321111112
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE--------EEE----ecCCCCEEEEEEc--------cCCCEEEEEe
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV--------VDW----TDLHEMVTAACYT--------PDGQNALIGS 655 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--------~~~----~~~~~~V~sv~fs--------pdg~~Lasgs 655 (969)
....+.|++ +...++.+-.+|.+.+||....-. +.. ......|..+.|. |+...|+++.
T Consensus 158 ~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 158 LLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 234678999 888888888899999999865311 111 1122335556654 4778899999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC---------cEEEEeCC-cceEEEEe
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS---------RIRILDGL-DIVHKFRG 725 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg---------~I~IwD~~-~~~~~~~~ 725 (969)
.+|.+.|..-.+...... ......+..+.|+++| ..|++++.+. .|.+|... .....++.
T Consensus 237 ~nGr~QiMR~eND~~Pvv---------~dtgm~~vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv 306 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEPVV---------VDTGMKIVGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV 306 (1189)
T ss_pred cCceehhhhhcCCCCCeE---------EecccEeecceecCCC-cEEEEccCcccccCccccceEEEeccchhheEEEec
Confidence 999998876554432221 1223678899999998 7888876542 45555532 22222222
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 726 FRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 726 ~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
....|++++|-..|-.++.+- |+.|++=++
T Consensus 307 --pg~~It~lsWEg~gLriA~Av-dsfiyfanI 336 (1189)
T KOG2041|consen 307 --PGSCITGLSWEGTGLRIAIAV-DSFIYFANI 336 (1189)
T ss_pred --CCceeeeeEEcCCceEEEEEe-cceEEEEee
Confidence 344577777766665554443 444444333
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-05 Score=86.95 Aligned_cols=155 Identities=11% Similarity=0.207 Sum_probs=107.3
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC---Cceee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED---SKLHQ 672 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~---~~~~~ 672 (969)
+..++ .+.+|+++..+....++++... ++..........+++.|..+...+.++...|.++-+|+-. +...
T Consensus 68 ~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~- 145 (390)
T KOG3914|consen 68 VLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE- 145 (390)
T ss_pred cccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-
Confidence 34555 6777777777777666666543 3344444455566777777777777766666555555433 3322
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc--eEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI--VHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~--~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
...+|...++.++|+||+ ++++++..|..|++-..... +..+ ..+|...|..++.-++ ..|++||.|
T Consensus 146 --------~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~eFVS~isl~~~-~~LlS~sGD 214 (390)
T KOG3914|consen 146 --------PILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESF-CLGHKEFVSTISLTDN-YLLLSGSGD 214 (390)
T ss_pred --------hhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhh-ccccHhheeeeeeccC-ceeeecCCC
Confidence 226899999999999998 89999999999999763322 1111 2345667888887754 569999999
Q ss_pred CcEEEEEcCCCCccCCC
Q 002086 751 SQVYVWKREEHRNASTG 767 (969)
Q Consensus 751 g~I~IWdl~t~~~~~t~ 767 (969)
++|++||+.+++++.+.
T Consensus 215 ~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTC 231 (390)
T ss_pred CcEEEEecccCCccccc
Confidence 99999999998877653
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00059 Score=79.69 Aligned_cols=190 Identities=12% Similarity=0.041 Sum_probs=118.0
Q ss_pred cCEEEEEEeCCCCE-EEEEeC---CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 452 GSIWTIKFSLDARF-LASAGE---DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 452 ~~I~~l~fSpDg~~-LaTgs~---DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
+.+..-.|+|||+. ++..+. +..|.++|+.+++....
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l--------------------------------------- 228 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI--------------------------------------- 228 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 37889999999984 554443 35688888877655331
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCC--CcEEEEECCCCcEEEEeecCCCeEEEEEe
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMD--KTVRLWDMETKSCLKLFAHNDYVTCIQFN 603 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~D--gtV~IWDl~t~~~i~~~~h~~~V~sv~fs 603 (969)
....+.+....|+| ++.| ++.+.+ ..|.++|+.+++......+........|+
T Consensus 229 -----------------------t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~S 285 (419)
T PRK04043 229 -----------------------ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFV 285 (419)
T ss_pred -----------------------ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEEC
Confidence 11223344567888 5444 444434 56888899888766554444434456899
Q ss_pred cCCCCEEEEEECC-C--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC---------CcEEEEEcCCCcee
Q 002086 604 PMDDDYFISGSLD-A--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK---------GSCRLYSIEDSKLH 671 (969)
Q Consensus 604 p~~~~~L~sgs~D-g--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d---------g~I~IwDl~~~~~~ 671 (969)
| +++.|+..+.. + .|+++|+.+++...+...... ...|+|+|++|+..... ..|.+.|+.++...
T Consensus 286 P-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 286 E-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred C-CCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 9 88877766532 3 588889988876554432222 24899999998876543 36888898887643
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc--EEEEeC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR--IRILDG 716 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~--I~IwD~ 716 (969)
.... . .......|+|+|...+++....+. |.+.++
T Consensus 363 ~LT~---------~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 363 RLTA---------N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred ECCC---------C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 2211 1 122347899999544444433333 444443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.4e-06 Score=89.00 Aligned_cols=140 Identities=13% Similarity=0.287 Sum_probs=105.9
Q ss_pred CCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC-----cEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK-----SCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~-----~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
..+.|.++.|.. ++++..|+..|.|...|++.+ .+...+-|...|+++.....++.+|++.+.+|+|++||++.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 456788888887 899999999999999999864 57778899999999998876789999999999999999986
Q ss_pred ceE----EEEecCCCCE--EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 627 RLV----VDWTDLHEMV--TAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 627 ~~~----~~~~~~~~~V--~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
-+. ....+|-..- .-+-..+....+++++.|...+||.++.+.+.....+.. ......+.+++|..
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~----s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY----SASEVDIPSVAFDS 402 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC----ccccccccceehhc
Confidence 544 4455554322 233445566788889999999999999998876543321 23333455566553
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.7e-06 Score=86.49 Aligned_cols=206 Identities=18% Similarity=0.286 Sum_probs=136.2
Q ss_pred CCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc-EEE----Ee-ec------------CCCeEEEEEecC-CCCEEEE
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS-CLK----LF-AH------------NDYVTCIQFNPM-DDDYFIS 612 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~-~i~----~~-~h------------~~~V~sv~fsp~-~~~~L~s 612 (969)
....|+++.|.. |.+|++|...|.|.++.-.... |.. .| +| ...|..|.|... ....|+.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 345789999987 8999999999999999765432 221 11 23 345778888652 2357788
Q ss_pred EECCCeEEEEeCCCceE-------------------------------------E-------EEecCCCCEEEEEEccCC
Q 002086 613 GSLDAKVRIWSISDRLV-------------------------------------V-------DWTDLHEMVTAACYTPDG 648 (969)
Q Consensus 613 gs~Dg~I~IWDl~~~~~-------------------------------------~-------~~~~~~~~V~sv~fspdg 648 (969)
.+.|.+|++|.+....+ + ....|..-|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 88999999998743210 0 112344457889999887
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeeecc-cccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc------eE
Q 002086 649 QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT-KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI------VH 721 (969)
Q Consensus 649 ~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~-~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~------~~ 721 (969)
+.++++. |=.|.+|++.-..... ..+.+.. ....-..-|++..|+|.....+.-.+..|.|++-|+++. ..
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeecc-ceeeeeccccccCCce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 7777654 6789999876432110 0011100 001123457888999988788888999999999997631 11
Q ss_pred EEEee----------cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 722 KFRGF----------RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 722 ~~~~~----------~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+... .-...|..+.|+++|+|+++-+. -+|+|||++..
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 11111 11245778999999999998764 48999999874
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00017 Score=84.58 Aligned_cols=211 Identities=15% Similarity=0.132 Sum_probs=137.3
Q ss_pred EeccCCCCEEEEEecC-C------------cEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCC--C-CEEE
Q 002086 549 SFIGHLDDVLDLSWSR-S------------HLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMD--D-DYFI 611 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~------------~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~--~-~~L~ 611 (969)
.+.-|...|+.+.|.| . -+|+++...|.|.+||...+..+..+ .|..++..++|-+.. . ..|+
T Consensus 50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll 129 (1062)
T KOG1912|consen 50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL 129 (1062)
T ss_pred ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence 4455778888888875 1 25777888899999999988877666 677899999998732 2 4677
Q ss_pred EEECCCeEEEEeCCCceEEEEecCC-CCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcee----eeeeeeecccc---
Q 002086 612 SGSLDAKVRIWSISDRLVVDWTDLH-EMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLH----QLNQVDFQTKK--- 682 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~~~~-~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~----~~~~~~~~~~~--- 682 (969)
+-....+|.+|+..+|+.+-..... ....|+.+.| |.+.+.+-+..|.+.+-+.-..... +..++.-....
T Consensus 130 aIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~ 209 (1062)
T KOG1912|consen 130 AIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH 209 (1062)
T ss_pred EecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh
Confidence 7777789999999999877655544 4556799988 5567777777787777765432211 11111100000
Q ss_pred --------------cCCCCC---eEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC--CE
Q 002086 683 --------------KSSTRK---ITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG--KY 743 (969)
Q Consensus 683 --------------~~h~~~---It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg--~~ 743 (969)
...... ...++|+|.- +.++.......+.++|..-...........+.+.-+.+-|++ ..
T Consensus 210 lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 210 LERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA 288 (1062)
T ss_pred hhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcce
Confidence 000001 1235678876 455556677889999965333333322233334455666654 57
Q ss_pred EEEEeCCCcEEEEEcCC
Q 002086 744 IISASEDSQVYVWKREE 760 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~t 760 (969)
|++.-.||.+.||-.+.
T Consensus 289 LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEEEecCCeEEEEEeec
Confidence 99999999999998765
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.5e-06 Score=94.50 Aligned_cols=197 Identities=17% Similarity=0.285 Sum_probs=131.4
Q ss_pred EEEEEecC---CcEEEEEeCCCcEEEEECCCC--cEEE--EeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-
Q 002086 557 VLDLSWSR---SHLLLSSSMDKTVRLWDMETK--SCLK--LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL- 628 (969)
Q Consensus 557 I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~--~~i~--~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~- 628 (969)
|-++.|++ ..+-++......-.+|++... +.+. ..+|...|+.+.|+|.....+++++.|-.+..||+++..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 34455654 233333334445567887543 2332 338999999999999888999999999999999998753
Q ss_pred -EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 629 -VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 629 -~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
+..+..-......+.|+.....+++.+....|++||++.+..... ..++|...|..+.|..--...+++.+.
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~-------s~K~~vs~vn~~~fnr~~~s~~~s~~~ 222 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC-------SLKGHVSSVNSIDFNRFKYSEIMSSSN 222 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceE-------EecccceeeehHHHhhhhhhhhcccCC
Confidence 334444556678899998777788888889999999998764321 225688889999988765568999999
Q ss_pred CCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCC
Q 002086 708 DSRIRILDGLDIVHKFR-GFRNTSSQISAAFNAD--GKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 708 Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspd--g~~LaSgs~Dg~I~IWdl~t 760 (969)
|++|++||..+.....+ ......+|..-.|.|- |.++.---.+..+.+++.++
T Consensus 223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n 278 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN 278 (1081)
T ss_pred CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccc
Confidence 99999999544322111 1223345556666663 33333222233555555443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00025 Score=80.58 Aligned_cols=241 Identities=14% Similarity=0.250 Sum_probs=144.5
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
=+-+.|||-|.||+|--.-| |.+|--.+-..++.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R--------------------------------------------- 246 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR--------------------------------------------- 246 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHh---------------------------------------------
Confidence 45689999999999998877 78996443222111
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC-----------CCcEEEEECCCCcEEEEeec---CCCeE
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-----------DKTVRLWDMETKSCLKLFAH---NDYVT 598 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-----------DgtV~IWDl~t~~~i~~~~h---~~~V~ 598 (969)
| .| -.|.-+.||| .++|+|-+. ...++|||+.+|...+.|.. ...++
T Consensus 247 ----------------F-~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~W 308 (698)
T KOG2314|consen 247 ----------------F-YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKW 308 (698)
T ss_pred ----------------c-cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCcccc
Confidence 1 13 2366788898 788888652 25799999999999888743 22333
Q ss_pred -EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC-CCEEEEEEccCCCEEEEEeCC-----CcEE----------
Q 002086 599 -CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH-EMVTAACYTPDGQNALIGSHK-----GSCR---------- 661 (969)
Q Consensus 599 -sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~-~~V~sv~fspdg~~Lasgs~d-----g~I~---------- 661 (969)
-..|+. ++.+++.-.. ..|.||+..+-.++...... ..|....|+|.++.||--+.. ..+.
T Consensus 309 P~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i 386 (698)
T KOG2314|consen 309 PIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI 386 (698)
T ss_pred ceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence 356887 8888887665 56899988765444333322 456677777776666542211 0122
Q ss_pred ----EEEcCCCceeeeeeee------------------------------ecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 662 ----LYSIEDSKLHQLNQVD------------------------------FQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 662 ----IwDl~~~~~~~~~~~~------------------------------~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
++++.+.++.-+.... +..........|..++|-|.|..+.+..+.
T Consensus 387 Rt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 387 RTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred eeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc
Confidence 2222221111100000 000011224567888999998655544443
Q ss_pred --CCcEEEEeCCcceEEEEe--ecCCCCeEEEEEeCCCCEEEEEe---CCCcEEEEEcCC
Q 002086 708 --DSRIRILDGLDIVHKFRG--FRNTSSQISAAFNADGKYIISAS---EDSQVYVWKREE 760 (969)
Q Consensus 708 --Dg~I~IwD~~~~~~~~~~--~~~~~~V~sl~fspdg~~LaSgs---~Dg~I~IWdl~t 760 (969)
..++.+|........... .-.....+.+.|+|.|++++.+. ..|.+.++|..-
T Consensus 467 ~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 467 TVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred ccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 356888875422111111 11123456899999999998764 468899999874
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0022 Score=69.28 Aligned_cols=187 Identities=16% Similarity=0.163 Sum_probs=123.5
Q ss_pred EEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-
Q 002086 559 DLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL- 635 (969)
Q Consensus 559 ~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~- 635 (969)
+..|.+ +.++++--..+.|..|+..+++..... ... ...+++.. .+..|+.+..++ +.++|+.++++..+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~-~~G~~~~~-~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG-PNGMAFDR-PDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS-EEEEEEEC-TTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC-CceEEEEc-cCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 567876 455666667899999999988665432 222 77888884 346666666655 56669998866544332
Q ss_pred -----CCCEEEEEEccCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 636 -----HEMVTAACYTPDGQNALIGSHK--------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 636 -----~~~V~sv~fspdg~~Lasgs~d--------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
....+.+++.++|++.++.... |.|..++.. ++..... ........|+|+|++..++
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~---------~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA---------DGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE---------EEESSEEEEEEETTSSEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe---------cCcccccceEECCcchhee
Confidence 3557899999999977776543 557777776 4432221 1234578999999985556
Q ss_pred EEEeCCCcEEEEeCC--cc----eEEEEeecCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 703 LVTSADSRIRILDGL--DI----VHKFRGFRNT-SSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~--~~----~~~~~~~~~~-~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
++-+..+.|..++.. .. ...+...... ...-.+++..+|++.++.-..+.|.+++-+
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 677888899999853 21 1222222222 236689999999998888889999999976
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.4e-05 Score=84.82 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=107.9
Q ss_pred EEEecC-CcEEEEEeCCCcEEEEECCCCc----EEEEeecCCCeEEEEEecCCCCEEEEE---ECCCeEEEEeCCCceEE
Q 002086 559 DLSWSR-SHLLLSSSMDKTVRLWDMETKS----CLKLFAHNDYVTCIQFNPMDDDYFISG---SLDAKVRIWSISDRLVV 630 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~----~i~~~~h~~~V~sv~fsp~~~~~L~sg---s~Dg~I~IWDl~~~~~~ 630 (969)
.+.+++ +.+|+.+..++...++++.... ++..+.....-+++.|.. +....+.+ +....+.+|....+...
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccCcc
Confidence 344555 6677777777777677765433 333333344445555554 34444433 44455666666668888
Q ss_pred EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc
Q 002086 631 DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR 710 (969)
Q Consensus 631 ~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~ 710 (969)
...+|-..++.++|+||+++|+++..|+.|+|-........ ....-+|...|..++.-++ +.|++++.|++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I-------esfclGH~eFVS~isl~~~--~~LlS~sGD~t 216 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI-------ESFCLGHKEFVSTISLTDN--YLLLSGSGDKT 216 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch-------hhhccccHhheeeeeeccC--ceeeecCCCCc
Confidence 88999999999999999999999999999999776543322 2223679999999999986 47999999999
Q ss_pred EEEEeCCcceE
Q 002086 711 IRILDGLDIVH 721 (969)
Q Consensus 711 I~IwD~~~~~~ 721 (969)
|++||..+...
T Consensus 217 lr~Wd~~sgk~ 227 (390)
T KOG3914|consen 217 LRLWDITSGKL 227 (390)
T ss_pred EEEEecccCCc
Confidence 99999765443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0048 Score=78.58 Aligned_cols=291 Identities=15% Similarity=0.210 Sum_probs=167.8
Q ss_pred cccCEEEEEEeCCCCEEEEEeC---C---CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 450 HEGSIWTIKFSLDARFLASAGE---D---RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~---D---gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+.+.-..|+|-.||.|+|+.+. . ..||||+-+ |++....+.....-..+.+.+.+...+..-.
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~---------- 276 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR---------- 276 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE----------
Confidence 5566778999999999998874 2 589999976 6655543322122222222222221110000
Q ss_pred CCCCCCCCcccccceeeecCCCceeEe----ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEE-E---EeecC
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSF----IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCL-K---LFAHN 594 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l----~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i-~---~~~h~ 594 (969)
.... .....|...+-....| ......|..+.|+. +..|+..-.|. |.+|-..+..-. + .+...
T Consensus 277 ---~~~~----~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~ 348 (928)
T PF04762_consen 277 ---LPDR----HDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS 348 (928)
T ss_pred ---cCCC----cEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC
Confidence 0000 1111222222222222 23556899999998 67777766555 999999876532 1 22344
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeC----CC---------ceE-------E----------------EEecCCCC
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSI----SD---------RLV-------V----------------DWTDLHEM 638 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl----~~---------~~~-------~----------------~~~~~~~~ 638 (969)
..+..+.|+|.+...|.....+|.+..+++ .. +.+ + ........
T Consensus 349 ~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~ 428 (928)
T PF04762_consen 349 ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSP 428 (928)
T ss_pred CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCC
Confidence 556669999977778888887777766554 11 111 0 22334567
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee------eeeee----cccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 639 VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL------NQVDF----QTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 639 V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~------~~~~~----~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
|.+++|++++..+++-..||.|.+|.......... ..+.. ..........+..+.|...+ ..+++...+
T Consensus 429 v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 507 (928)
T PF04762_consen 429 VNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDD-TLLVLSDSD 507 (928)
T ss_pred cEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCC-EEEEEEecC
Confidence 99999999998899999999999998654432210 00000 00112235567888888776 455555443
Q ss_pred ---CcEEEEeCCcc---eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 709 ---SRIRILDGLDI---VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 709 ---g~I~IwD~~~~---~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..+.+++.... ............+..+...++...++.-..||.|+..+...
T Consensus 508 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 508 SNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred cccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence 56777775322 22222233344455555555555577777799988766654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00015 Score=86.68 Aligned_cols=179 Identities=12% Similarity=0.140 Sum_probs=137.7
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCC-CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHND-YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAA 642 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~-~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv 642 (969)
...++.|+.-..+..+|+.+.+..+...-.. .|+-|.. ++.++.+|...|+|.+-|.++.+.++ +..|.+.|..+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4677778888888899999988887764433 4666665 57899999999999999999987665 55577777655
Q ss_pred EEccCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE
Q 002086 643 CYTPDGQNALIGSH---------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713 (969)
Q Consensus 643 ~fspdg~~Lasgs~---------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I 713 (969)
. -.|+.|++++. |.-|+|||++..+.+...++. ....-+.|+|.-...+++++..|...+
T Consensus 224 D--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---------~~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 224 D--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---------YGPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred e--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---------cCchhhhhcccccceEEEEecccceee
Confidence 4 46888888765 456899999987765433321 112456789988889999999999999
Q ss_pred Ee---CCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 714 LD---GLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 714 wD---~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
-| ..+. ...+..+.....+..++++++|+.|+.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99 3333 44455555666699999999999999999999999998
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.96 E-value=5e-06 Score=97.86 Aligned_cols=203 Identities=16% Similarity=0.209 Sum_probs=133.5
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
-+..++..++|+.|...-+|++|+-+.++|+.|+..|.|+++++.+|........|..++..+...........
T Consensus 1087 IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lt------ 1160 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLT------ 1160 (1516)
T ss_pred hHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeee------
Confidence 34556667789999999999999999999999999999999999999887766666555443322222111110
Q ss_pred CCcccccCCCCCCCCcccccceeeecC--CCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLS--EKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-- 591 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~--~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-- 591 (969)
...+.......|... ..+.+.| ..-.++.|+. .+.-+.|.....+.|||++++..+.++
T Consensus 1161 ------------sss~S~PlsaLW~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1161 ------------SSSSSSPLSALWDASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred ------------eccccCchHHHhccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcC
Confidence 000111111122221 1222222 2345788887 344455555577999999999877653
Q ss_pred ---ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 592 ---AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 592 ---~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
+....-+++.|+| ++.+++ .|| .+||++..+.+..+..-..-..-.|+|+|..++..++ |||+++.
T Consensus 1225 ~~~~~~y~~n~a~FsP-~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSP-CDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred cchhhhhhccccccCC-CcceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHHH
Confidence 3334447889999 777666 355 4799998765554444333445679999999998874 8999998
Q ss_pred ceee
Q 002086 669 KLHQ 672 (969)
Q Consensus 669 ~~~~ 672 (969)
+++.
T Consensus 1294 ~lLh 1297 (1516)
T KOG1832|consen 1294 KLLH 1297 (1516)
T ss_pred HHHh
Confidence 7643
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.1e-06 Score=98.51 Aligned_cols=199 Identities=18% Similarity=0.244 Sum_probs=139.6
Q ss_pred CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCC--eEE
Q 002086 545 KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDA--KVR 620 (969)
Q Consensus 545 k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg--~I~ 620 (969)
++...|..|+...+|++|+- .++|+.|+..|.|+++++.+|...... .|...|+-+.-+. ++..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 45567888999999999998 789999999999999999999988766 8999999999888 777766654433 467
Q ss_pred EEeCCC-ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 621 IWSISD-RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 621 IWDl~~-~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
+|++.. +...+.+ ..-.++.|+..-+.-+.|+......|||+.++......-.. ..+....-.+..|+|++
T Consensus 1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~----~~~~~y~~n~a~FsP~D- 1242 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD----TVTSSYSNNLAHFSPCD- 1242 (1516)
T ss_pred HhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc----chhhhhhccccccCCCc-
Confidence 999865 2222222 33457888877667777888889999999998765432111 11222233677899987
Q ss_pred ceEEEEeCCCcEEEEeCCcc--eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccC
Q 002086 700 SEVLVTSADSRIRILDGLDI--VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAS 765 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~--~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~ 765 (969)
.+++ .|| .+||.+.. ++.|..+. --..-.|+|.|.-++.-++ |||+++-+.+.
T Consensus 1243 ~LIl---ndG--vLWDvR~~~aIh~FD~ft---~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRFDQFT---DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLH 1297 (1516)
T ss_pred ceEe---eCc--eeeeeccHHHHhhhhhhe---ecccccccCCCceEEeech-----hhhhHHHHHHh
Confidence 4444 233 47886653 23332222 1123469999999998875 99999854443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00021 Score=79.49 Aligned_cols=254 Identities=16% Similarity=0.173 Sum_probs=168.0
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
-|.+.|+-+.-+ -.+++.+++.||.++.|--..-.-+.
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvE----------------------------------------- 44 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVE----------------------------------------- 44 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCcccee-----------------------------------------
Confidence 388888887665 45799999999999999754211111
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC-CCcEEEEECCCCcEEEEeecCCCeEEEEEecCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMD 606 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~ 606 (969)
.+..+..|...|..++.+- +-++.|.+. |..++++|+.+-..+..+........+.|....
T Consensus 45 -----------------fVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~sk 107 (558)
T KOG0882|consen 45 -----------------FVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSK 107 (558)
T ss_pred -----------------ehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCC
Confidence 1124567888888888887 677888777 999999999887665444333333333443312
Q ss_pred C----CEEEEEECCCeEEEEeCCCce--EE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-Cceeee-eeee
Q 002086 607 D----DYFISGSLDAKVRIWSISDRL--VV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED-SKLHQL-NQVD 677 (969)
Q Consensus 607 ~----~~L~sgs~Dg~I~IWDl~~~~--~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~~~~~~-~~~~ 677 (969)
+ ..-++.-.+|.|.|+|-.... .. ...-|..+|.++.+.+-+..+++....|-|.-|.... .+.... ..+.
T Consensus 108 Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~ 187 (558)
T KOG0882|consen 108 GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFE 187 (558)
T ss_pred CCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccc
Confidence 3 122334457889999987643 22 3334668999999999999999999999999999874 111100 1111
Q ss_pred ec-----ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc--eEEEE--------------------------
Q 002086 678 FQ-----TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI--VHKFR-------------------------- 724 (969)
Q Consensus 678 ~~-----~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~--~~~~~-------------------------- 724 (969)
++ ..........+++.|+|++ ..+.+-+.|..|++++.... .+.+.
T Consensus 188 ~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRma 266 (558)
T KOG0882|consen 188 LKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMA 266 (558)
T ss_pred ccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhh
Confidence 11 1123345678899999998 67888889999999873211 10000
Q ss_pred -----eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 725 -----GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 725 -----~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
........+.+.|...|++|+-|+-=| |++.++.+++.
T Consensus 267 verelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 267 VERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred HHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 001122345688999999999988654 88999988543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00057 Score=81.10 Aligned_cols=187 Identities=11% Similarity=0.136 Sum_probs=132.0
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
.+.|+|++++ +++|+-|..+|.|++.+....- .
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~------------------------------------------- 71 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--K------------------------------------------- 71 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--c-------------------------------------------
Confidence 5678888887 7899999999999999865211 0
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCC----
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMD---- 606 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~---- 606 (969)
....|... -..|.++++|+.||+|.|-.+.+.+....+....++.+|+++| +
T Consensus 72 ------------------~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~P-d~~~~ 127 (846)
T KOG2066|consen 72 ------------------TNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHP-DFSRQ 127 (846)
T ss_pred ------------------cccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEecc-chhhh
Confidence 11123222 1127999999999999999999999999999999999999999 4
Q ss_pred -CCEEEEEECCCeEEEEeCC---CceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 607 -DDYFISGSLDAKVRIWSIS---DRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 607 -~~~L~sgs~Dg~I~IWDl~---~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
...+++|+.-| +.++.-+ ....+......++|.++.|. |+++|-+..+| |+|||+...+.....+.+. ..
T Consensus 128 ~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~--~~ 201 (846)
T KOG2066|consen 128 QSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPS--QS 201 (846)
T ss_pred hhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCC--CC
Confidence 46899999988 7776532 22333455667899999996 66777777554 8999999887654433222 11
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
.........+.|.+.. .|+.| ...+|+|..+.
T Consensus 202 ~R~e~fpphl~W~~~~--~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDED--RLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCcccCCCceEecCCC--eEEEe-cCCeEEEEEEe
Confidence 2233344567788754 45554 44566666544
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0027 Score=67.73 Aligned_cols=193 Identities=15% Similarity=0.149 Sum_probs=105.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
=.-++||||+.+||.+...|+|+++|+...++.. +..... .. +
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~-I~p~~~-------~~--------~--------------------- 88 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFV-IPPAMS-------FP--------G--------------------- 88 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEE-cCcccc-------cC--------C---------------------
Confidence 3578999999999999999999999998644432 111000 00 0
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-------CcEEEEEeCCCcEEEEECCC-----CcEEEEe----ecCCCe
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-------SHLLLSSSMDKTVRLWDMET-----KSCLKLF----AHNDYV 597 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-------~~~L~Sgs~DgtV~IWDl~t-----~~~i~~~----~h~~~V 597 (969)
.-...|-.+.|.+ ...|+.-..+|.++=|-+.. .+....| .+...|
T Consensus 89 ------------------d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi 150 (282)
T PF15492_consen 89 ------------------DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI 150 (282)
T ss_pred ------------------ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence 0112333333332 23566667777777666532 2233333 357789
Q ss_pred EEEEEecCCCCEEEEEECCCe-EEEEeCCCceEEEEecCCCCEEEEEEccCCCE-E-EEEeCCCc------EEEEEcCCC
Q 002086 598 TCIQFNPMDDDYFISGSLDAK-VRIWSISDRLVVDWTDLHEMVTAACYTPDGQN-A-LIGSHKGS------CRLYSIEDS 668 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~-I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~-L-asgs~dg~------I~IwDl~~~ 668 (969)
.++.++| ..++|++|+.... -..+. .....+++-.+-.+..+ . ++...++. ..+|.+-+.
T Consensus 151 ~~~vy~p-~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~ 219 (282)
T PF15492_consen 151 NSAVYHP-KHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF 219 (282)
T ss_pred eEEEEcC-CCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce
Confidence 9999999 7777777654322 00000 01111111111111111 0 11111111 122322221
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~ 721 (969)
+. ..........|..+..+|++ ..|++...+|.|.+|++-.+..
T Consensus 220 ~~--------fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 220 KF--------FSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ee--------eeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence 11 11113456789999999999 8999999999999999765443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.85 E-value=3e-05 Score=58.00 Aligned_cols=37 Identities=38% Similarity=0.721 Sum_probs=34.3
Q ss_pred CceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEE
Q 002086 545 KPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWD 581 (969)
Q Consensus 545 k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWD 581 (969)
+++..+.+|.+.|++|+|+| +.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35678999999999999999 79999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00086 Score=73.89 Aligned_cols=82 Identities=15% Similarity=0.219 Sum_probs=71.9
Q ss_pred ceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 546 PFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
+...+.+|...|.+++|+| ..++..++.+.+|+|.|+++..++..+.-...+++++|.-.+.++|++|-..|.|.|||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence 3446778999999999999 45899999999999999999999988865599999999986778999999999999999
Q ss_pred CCCc
Q 002086 624 ISDR 627 (969)
Q Consensus 624 l~~~ 627 (969)
++..
T Consensus 265 ~R~~ 268 (463)
T KOG1645|consen 265 MRQP 268 (463)
T ss_pred ccCC
Confidence 9753
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0063 Score=64.85 Aligned_cols=145 Identities=15% Similarity=0.087 Sum_probs=92.1
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEe-ecC----CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCC-C
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLF-AHN----DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHE-M 638 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~----~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~-~ 638 (969)
+..++.++.++.|+.+|..+|+.+... ... .......... .++.++++..++.|..+|+.+|+++....... .
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 567777778899999999999998774 221 1122223333 47888999989999999999998865443322 1
Q ss_pred ----------EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 639 ----------VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 639 ----------V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
+..-.+..++ .++++..++.+.-+|+.+++..... . ...+..+ ....+ ..|++++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~--------~--~~~~~~~-~~~~~-~~l~~~~~~ 221 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSK--------P--ISGIYSL-PSVDG-GTLYVTSSD 221 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEE--------C--SS-ECEC-EECCC-TEEEEEETT
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEe--------c--CCCccCC-ceeeC-CEEEEEeCC
Confidence 1222222344 7777777886444499999854211 1 1112221 23444 567777799
Q ss_pred CcEEEEeCCcceEEE
Q 002086 709 SRIRILDGLDIVHKF 723 (969)
Q Consensus 709 g~I~IwD~~~~~~~~ 723 (969)
+.|..||..+....+
T Consensus 222 ~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 222 GRLYALDLKTGKVVW 236 (238)
T ss_dssp TEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCCEEe
Confidence 999999988766544
|
... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00024 Score=84.86 Aligned_cols=164 Identities=15% Similarity=0.249 Sum_probs=125.7
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
|+.+.+..+...--.+.|+=|+. ++++|.+|...|+|.+-|..+.+.+.
T Consensus 163 Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~ih----------------------------- 211 (1118)
T KOG1275|consen 163 DLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIH----------------------------- 211 (1118)
T ss_pred ecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceee-----------------------------
Confidence 55555555555545555766665 47899999999999999988655443
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeC---------CCcEEEEECCCCcE
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSM---------DKTVRLWDMETKSC 587 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~---------DgtV~IWDl~t~~~ 587 (969)
++..|++.|.++... |+.|++++. |.-|+|||++..+.
T Consensus 212 --------------------------------t~~aHs~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 212 --------------------------------TFDAHSGSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred --------------------------------eeeccccceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 677899999888776 688888874 56789999998887
Q ss_pred EEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe---CCCce--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 002086 588 LKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS---ISDRL--VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL 662 (969)
Q Consensus 588 i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD---l~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~I 662 (969)
+.-++......-+.|+|.-...+++++..|...+-| +.+.. +.........+..++++++++.++.|..+|.|.+
T Consensus 259 l~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 259 LSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred cCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 776655555577889996677899999999999999 43332 2333334455999999999999999999999999
Q ss_pred EE
Q 002086 663 YS 664 (969)
Q Consensus 663 wD 664 (969)
|.
T Consensus 339 wa 340 (1118)
T KOG1275|consen 339 WA 340 (1118)
T ss_pred ec
Confidence 97
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.016 Score=67.22 Aligned_cols=179 Identities=10% Similarity=0.031 Sum_probs=109.8
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCC--------eEEEEEec-CCCCEEEEEECCCeEEEEeCCCceEEEEecC
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY--------VTCIQFNP-MDDDYFISGSLDAKVRIWSISDRLVVDWTDL 635 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~--------V~sv~fsp-~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~ 635 (969)
+..++.++.++.+..+|..+|+.+..+....+ ...+..+| ..+..++.++.+|.+..+|+.+++.+-....
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 284 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY 284 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence 45677788899999999999987655421110 11111111 0356777788899999999999987644332
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 636 HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 636 ~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.. ...+. ..+..|++++.+|.+..+|..+++..-.... .. ........+. + ..+++++.+|.|+++|
T Consensus 285 ~~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~------~~-~~~~~sp~v~--~-g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 285 GS-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD------LL-HRLLTAPVLY--N-GYLVVGDSEGYLHWIN 351 (394)
T ss_pred CC-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc------cC-CCcccCCEEE--C-CEEEEEeCCCEEEEEE
Confidence 22 11222 2466888888999999999998875432110 00 0111111222 2 4788899999999999
Q ss_pred CCcceEEEEeecCCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 716 GLDIVHKFRGFRNTSSQI-SAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~-sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
..+.....+.......+. ...+ .+..|+.++.||.|+.+++
T Consensus 352 ~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 352 REDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 776554443322222222 1122 3457888899999998875
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=4e-05 Score=88.31 Aligned_cols=198 Identities=15% Similarity=0.197 Sum_probs=132.9
Q ss_pred CCCCEEEEEecC--C-cEEEEEeCCCcEEEEECCCCcEE---EEeecCCCeEEEEEecCCCCEEEEEE----CCCeEEEE
Q 002086 553 HLDDVLDLSWSR--S-HLLLSSSMDKTVRLWDMETKSCL---KLFAHNDYVTCIQFNPMDDDYFISGS----LDAKVRIW 622 (969)
Q Consensus 553 H~~~I~~l~fs~--~-~~L~Sgs~DgtV~IWDl~t~~~i---~~~~h~~~V~sv~fsp~~~~~L~sgs----~Dg~I~IW 622 (969)
....+.|+++.- + ..++.|..+|.|-+-.++...-- .+-++..+.++++|++.+.+.|++|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 344567787764 3 57888999999999988754322 23378899999999997777888773 35679999
Q ss_pred eCCCce--EE---EEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 623 SISDRL--VV---DWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 623 Dl~~~~--~~---~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
|+.++. +. .+.. ......+++|..+.+++++|.....+.++|++....... ......+..+...|
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~---------svnTk~vqG~tVdp 205 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS---------SVNTKYVQGITVDP 205 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh---------hhhhhhcccceecC
Confidence 998762 11 1222 334566899998889999999999999999984321110 22334566777888
Q ss_pred CCCceEEEEeCCCcEEEEeC-CcceEEEEeecC-----CCCeEEEEEeCCC-CEEEEEeC-CCcEEEEEcCC
Q 002086 697 SNPSEVLVTSADSRIRILDG-LDIVHKFRGFRN-----TSSQISAAFNADG-KYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~-~~~~~~~~~~~~-----~~~V~sl~fspdg-~~LaSgs~-Dg~I~IWdl~t 760 (969)
-.+.+++.- .|+.|.+||. .+....+....+ ...+..++|+|.. ..|++... .++|+++++..
T Consensus 206 ~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 206 FSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 664555554 4999999993 332222221111 2247889999942 34555554 57899999865
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0068 Score=66.44 Aligned_cols=200 Identities=12% Similarity=0.114 Sum_probs=125.5
Q ss_pred EEEecC--CcEEEEEeCCCc-EEEEECCCCcEEEEeecC---CCeEEEEEecCCCCEEEEEEC-----CCeEEEEeCCCc
Q 002086 559 DLSWSR--SHLLLSSSMDKT-VRLWDMETKSCLKLFAHN---DYVTCIQFNPMDDDYFISGSL-----DAKVRIWSISDR 627 (969)
Q Consensus 559 ~l~fs~--~~~L~Sgs~Dgt-V~IWDl~t~~~i~~~~h~---~~V~sv~fsp~~~~~L~sgs~-----Dg~I~IWDl~~~ 627 (969)
.++.+| ...++.+-.-|+ ..+||..+++....+.-. ..----.|++ ++++|++.-. .|.|-|||...+
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcCC
Confidence 455555 345555555554 568999999888766211 1112347898 9999998644 478999999933
Q ss_pred -eE-EEEecCCCCEEEEEEccCCCEEEEEeC------------------CCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 628 -LV-VDWTDLHEMVTAACYTPDGQNALIGSH------------------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 628 -~~-~~~~~~~~~V~sv~fspdg~~Lasgs~------------------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
+. -.+..+.-....+.+.|||+.|+++-. +-.+.+.|..+++++....+. ...|..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp----~~~~~l 163 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP----PDLHQL 163 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC----cccccc
Confidence 33 344444445677889999988877521 224555666777665443221 134677
Q ss_pred CeEEEEEcCCCCceEEEEeCCCc-------EEEEeCCcceEEEEe-----ecCCCCeEEEEEeCCCCEEEE-EeCCCcEE
Q 002086 688 KITGFQFSPSNPSEVLVTSADSR-------IRILDGLDIVHKFRG-----FRNTSSQISAAFNADGKYIIS-ASEDSQVY 754 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~-------I~IwD~~~~~~~~~~-----~~~~~~V~sl~fspdg~~LaS-gs~Dg~I~ 754 (969)
.|..+++.+++ ..++..-..+. |.+++.......+.. ..-..++-+|+++.+|.++++ +=.-+.+.
T Consensus 164 SiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 164 SIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred ceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 89999999987 33333322222 455554443333322 223467889999999987755 44577899
Q ss_pred EEEcCCCCcc
Q 002086 755 VWKREEHRNA 764 (969)
Q Consensus 755 IWdl~t~~~~ 764 (969)
+||..+++.+
T Consensus 243 ~~d~~tg~~~ 252 (305)
T PF07433_consen 243 VWDAATGRLL 252 (305)
T ss_pred EEECCCCCEe
Confidence 9999986443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0015 Score=80.89 Aligned_cols=195 Identities=14% Similarity=0.200 Sum_probs=135.4
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeC----CC---
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI----SD--- 626 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl----~~--- 626 (969)
+.|.++.|.. ...++.+..+|.|.+-|..+......-.-...|.+++|+| ++..++..+..+++.+-+- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhccc
Confidence 6899999987 7888889999999999988877666666788999999999 9999988888888766542 00
Q ss_pred --------ceEE---------EEec---------------------CCCCEEEEEEccCCCEEEEE-----eCCCcEEEE
Q 002086 627 --------RLVV---------DWTD---------------------LHEMVTAACYTPDGQNALIG-----SHKGSCRLY 663 (969)
Q Consensus 627 --------~~~~---------~~~~---------------------~~~~V~sv~fspdg~~Lasg-----s~dg~I~Iw 663 (969)
++.+ .+.+ ..+.=+.|+|--||+++++. .....|+||
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0000 0100 11122458999999999983 333799999
Q ss_pred EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE---eCCCcEEEEeCCcceE---EEEeecCCCCeEEEEE
Q 002086 664 SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT---SADSRIRILDGLDIVH---KFRGFRNTSSQISAAF 737 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg---s~Dg~I~IwD~~~~~~---~~~~~~~~~~V~sl~f 737 (969)
|-+ +.+.... ....+.-.+++|-|.| ..+++. ..|+.|.+|......+ .+........+..++|
T Consensus 228 drE-g~Lns~s--------e~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 228 DRE-GALNSTS--------EPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred ccc-chhhccc--------CcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence 987 4432211 2334445678999987 566665 4566799998443222 1222333444889999
Q ss_pred eCCCCEEEE---EeCCCcEEEEEcCC
Q 002086 738 NADGKYIIS---ASEDSQVYVWKREE 760 (969)
Q Consensus 738 spdg~~LaS---gs~Dg~I~IWdl~t 760 (969)
+.++..||+ ......|++|-+.+
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEecC
Confidence 999999988 55555699998876
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0055 Score=72.89 Aligned_cols=186 Identities=13% Similarity=0.138 Sum_probs=110.5
Q ss_pred CcEEEEEe-CCCcEEEEECCCCcEEEEe--ecCCCeEEEEEe--cCCCCEEEEEE------------------CCCeEEE
Q 002086 565 SHLLLSSS-MDKTVRLWDMETKSCLKLF--AHNDYVTCIQFN--PMDDDYFISGS------------------LDAKVRI 621 (969)
Q Consensus 565 ~~~L~Sgs-~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fs--p~~~~~L~sgs------------------~Dg~I~I 621 (969)
+++|..-. ....|-.-++...++-++. .....+..+.|. | +..++++++ ..+.+.+
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p-~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIP-RTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccC-CccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 34555544 3455666666655554443 333333333433 2 233333332 2355677
Q ss_pred EeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC----------------------------------------CCcEE
Q 002086 622 WSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH----------------------------------------KGSCR 661 (969)
Q Consensus 622 WDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~----------------------------------------dg~I~ 661 (969)
.|..+.++............+.++++|+++++.+. ++.|.
T Consensus 220 ID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~ 299 (635)
T PRK02888 220 VDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVP 299 (635)
T ss_pred EECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEE
Confidence 77777776655555556677888888888877752 12344
Q ss_pred EEEcCC-----CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-----------Ee
Q 002086 662 LYSIED-----SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-----------RG 725 (969)
Q Consensus 662 IwDl~~-----~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-----------~~ 725 (969)
+.|..+ .+.... ..-......+.++||+...++++..+.+|.|+|+.+....+ ..
T Consensus 300 VID~~t~~~~~~~v~~y---------IPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 300 VVDGRKAANAGSALTRY---------VPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred EEECCccccCCcceEEE---------EECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 444443 111111 12245567889999996666667779999999976543211 11
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 726 FRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 726 ~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..-...-...+|+++|....|--.|..|..|++..
T Consensus 371 vevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 11122234678999999888899999999999986
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.039 Score=60.60 Aligned_cols=231 Identities=13% Similarity=0.116 Sum_probs=141.9
Q ss_pred EEEEeC-CCCEEEEEeCCC-cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 456 TIKFSL-DARFLASAGEDR-VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 456 ~l~fSp-Dg~~LaTgs~Dg-tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
.++.+| ++..++.+-.-| ...+||..+++....+..
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a------------------------------------------ 46 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA------------------------------------------ 46 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC------------------------------------------
Confidence 567777 555666776655 467899998887664321
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-----CCCcEEEEECC-CCcEEEEe-ecCCCeEEEEEecC
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-----MDKTVRLWDME-TKSCLKLF-AHNDYVTCIQFNPM 605 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-----~DgtV~IWDl~-t~~~i~~~-~h~~~V~sv~fsp~ 605 (969)
.+-..|.|| -.|++ +++|++.- ..|.|-|||.. +.+.+..+ .|.-.-..|.+.|
T Consensus 47 -----------~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p- 108 (305)
T PF07433_consen 47 -----------PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP- 108 (305)
T ss_pred -----------CCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-
Confidence 112267777 56888 77887763 45889999999 55666666 4554556677888
Q ss_pred CCCEEEEEE------------------CCCeEEEEeCCCceEEEEec-----CCCCEEEEEEccCCCEEEEEeCCC----
Q 002086 606 DDDYFISGS------------------LDAKVRIWSISDRLVVDWTD-----LHEMVTAACYTPDGQNALIGSHKG---- 658 (969)
Q Consensus 606 ~~~~L~sgs------------------~Dg~I~IWDl~~~~~~~~~~-----~~~~V~sv~fspdg~~Lasgs~dg---- 658 (969)
++..|+++. .+-.+.+.|..+++++.... +...|..+++.++|..++..-..|
T Consensus 109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~ 188 (305)
T PF07433_consen 109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD 188 (305)
T ss_pred CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence 786666652 23456667778888776532 446799999999987666554433
Q ss_pred ---cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEE
Q 002086 659 ---SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISA 735 (969)
Q Consensus 659 ---~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl 735 (969)
.+.+++-.. ......... .........|-+|++++++....+++-..+.+.+||..+....-.. ....+..+
T Consensus 189 ~~PLva~~~~g~--~~~~~~~p~-~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~cGv 263 (305)
T PF07433_consen 189 APPLVALHRRGG--ALRLLPAPE-EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDACGV 263 (305)
T ss_pred cCCeEEEEcCCC--cceeccCCh-HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--ccCceeee
Confidence 233333222 111111110 1113445778999999988444455556788999996654432221 22234556
Q ss_pred EEeCCCCEEEEEeCCCcE
Q 002086 736 AFNADGKYIISASEDSQV 753 (969)
Q Consensus 736 ~fspdg~~LaSgs~Dg~I 753 (969)
+-.+++ ++++.+ .|.+
T Consensus 264 a~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 264 APTDDG-FLVSSG-QGQL 279 (305)
T ss_pred eecCCc-eEEeCC-CccE
Confidence 666666 666655 4443
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0017 Score=75.39 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=84.4
Q ss_pred EEecCCCCEEEEEEccC-CCEEEEE----eCCCc----EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 631 DWTDLHEMVTAACYTPD-GQNALIG----SHKGS----CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 631 ~~~~~~~~V~sv~fspd-g~~Lasg----s~dg~----I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
..........++.|+-. ...+.+. +.+|. ..+|++...++....... ......+.+++++|+. ..
T Consensus 200 ~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvts-----ipL~s~v~~ca~sp~E-~k 273 (545)
T PF11768_consen 200 SYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTS-----IPLPSQVICCARSPSE-DK 273 (545)
T ss_pred EEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEE-----EecCCcceEEecCccc-ce
Confidence 33334444566666652 3333332 23442 356777766554332221 3567789999999988 89
Q ss_pred EEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 702 VLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
++.|+.||.|.+||.......+.. ..-..+.++|+|+|.++++|+..|.|.+||+.-
T Consensus 274 LvlGC~DgSiiLyD~~~~~t~~~k--a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 274 LVLGCEDGSIILYDTTRGVTLLAK--AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEecCCeEEEEEcCCCeeeeee--ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 999999999999997665544432 234467899999999999999999999999864
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0015 Score=77.68 Aligned_cols=184 Identities=14% Similarity=0.101 Sum_probs=127.8
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD 634 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~ 634 (969)
..+.|++++ +.+|+-|+.+|.|++.+..... ...+.|... .. +|.++++|+.||+|.|..+-+.+......
T Consensus 40 D~is~~av~-~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 40 DAISCCAVH-DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred hHHHHHHhh-cceeeeccccceEEEEecCCcc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccceeEe
Confidence 455666666 5899999999999999987554 444555544 33 79999999999999999999998888888
Q ss_pred CCCCEEEEEEccC-----CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 635 LHEMVTAACYTPD-----GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 635 ~~~~V~sv~fspd-----g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
...++.+++++|+ .+.+++|+..| +.++.-.-...... + ......++|.++.|.. .+++-..|-
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~--v----~l~~~eG~I~~i~W~g----~lIAWand~ 179 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS--V----VLSEGEGPIHSIKWRG----NLIAWANDD 179 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc--e----eeecCccceEEEEecC----cEEEEecCC
Confidence 8899999999997 57899999988 77765331111000 0 1245678999999974 344455566
Q ss_pred cEEEEeCCcceEEEEeecC------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 710 RIRILDGLDIVHKFRGFRN------TSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 710 ~I~IwD~~~~~~~~~~~~~------~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.|++||+............ ...-..+.|.++.++++ |= -.+|+|..++.
T Consensus 180 Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 180 GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GW-GDSVKICSIKK 234 (846)
T ss_pred CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ec-CCeEEEEEEec
Confidence 6899996554333222111 11223577877665444 33 33799998883
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=72.83 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=64.4
Q ss_pred ceeeeEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
++..+-+.+|...|..|+|||..+ +|..++.+.+|+|.|+++..++..
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss------------------------------- 231 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS------------------------------- 231 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------------------
Confidence 334556889999999999999877 788999999999999987655442
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMET 584 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t 584 (969)
+..| ..+++++|.- .++|+.|...|.|.|||++.
T Consensus 232 ------------------------------y~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 232 ------------------------------YIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ------------------------------eecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 2234 6778888875 57888888888888888864
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.024 Score=68.28 Aligned_cols=143 Identities=17% Similarity=0.275 Sum_probs=98.4
Q ss_pred cEEEEEeCCC-----cEEEEECCC------CcEE---EEee-----cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC-
Q 002086 566 HLLLSSSMDK-----TVRLWDMET------KSCL---KLFA-----HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS- 625 (969)
Q Consensus 566 ~~L~Sgs~Dg-----tV~IWDl~t------~~~i---~~~~-----h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~- 625 (969)
.+|++.+.|+ .|+|||++. .+|+ ..+. ...++.+++++. +-..+|+|-.+|.|..+.-.
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcc
Confidence 5777777665 499999863 3455 3333 345788999998 78899999999999988532
Q ss_pred --C--ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 626 --D--RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 626 --~--~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
. .+.........+|+.+++..++..++.......|.+|.+.+.. ... .....+...+.|..|++..++
T Consensus 157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~------~~ld~~G~~lnCss~~~~t~q- 228 (933)
T KOG2114|consen 157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSL------KVLDNNGISLNCSSFSDGTYQ- 228 (933)
T ss_pred hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cce------eeeccCCccceeeecCCCCcc-
Confidence 1 1223334456889999999999885555556789999998544 111 112677888999999986532
Q ss_pred EEEEeCCCcEEEEeCCc
Q 002086 702 VLVTSADSRIRILDGLD 718 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~ 718 (969)
+++ +....|++|+...
T Consensus 229 fIc-a~~e~l~fY~sd~ 244 (933)
T KOG2114|consen 229 FIC-AGSEFLYFYDSDG 244 (933)
T ss_pred EEE-ecCceEEEEcCCC
Confidence 333 3456788898654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.019 Score=71.45 Aligned_cols=240 Identities=13% Similarity=0.143 Sum_probs=145.9
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
..+.|.++.|..++.-++.+..+|.|.+-|.++.....
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei------------------------------------------ 104 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI------------------------------------------ 104 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceee------------------------------------------
Confidence 34789999999999989999999999998877644321
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEEC----CCCcEE----------------
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDM----ETKSCL---------------- 588 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl----~t~~~i---------------- 588 (969)
...-...|.+++|+| .+.++..+.+++|.+-.- -..+.+
T Consensus 105 --------------------vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwG 164 (1265)
T KOG1920|consen 105 --------------------VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWG 164 (1265)
T ss_pred --------------------eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceeccc
Confidence 112345788999998 677777787777776543 111111
Q ss_pred ---EEe-e------------c---------CCCeEEEEEecCCCCEEEEEE----CC-CeEEEEeCCCceEEEEec-CCC
Q 002086 589 ---KLF-A------------H---------NDYVTCIQFNPMDDDYFISGS----LD-AKVRIWSISDRLVVDWTD-LHE 637 (969)
Q Consensus 589 ---~~~-~------------h---------~~~V~sv~fsp~~~~~L~sgs----~D-g~I~IWDl~~~~~~~~~~-~~~ 637 (969)
..| + + .+.=++|.|-- ++.+|++.. .+ .+|+|||-. +.+-.... ...
T Consensus 165 rkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~ 242 (1265)
T KOG1920|consen 165 RKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEG 242 (1265)
T ss_pred ccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccc
Confidence 011 0 0 11123578876 888888732 23 789999987 44332222 223
Q ss_pred CEEEEEEccCCCEEEEE---eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE---EeCCCcE
Q 002086 638 MVTAACYTPDGQNALIG---SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV---TSADSRI 711 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasg---s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s---gs~Dg~I 711 (969)
.-.+++|-|.|..+++- +.++.|.+|.-..... .. +..........|..++|+.++ ..|++ ......|
T Consensus 243 l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-g~----f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v 316 (1265)
T KOG1920|consen 243 LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-GE----FVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLV 316 (1265)
T ss_pred cccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-cc----cccCCcccccchheeeecCCC-CceeeeecccccceE
Confidence 45689999999998874 3456788887654321 11 112223344559999999987 56666 3444559
Q ss_pred EEEeCCcceEEEEeecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcC
Q 002086 712 RILDGLDIVHKFRGFRNTSSQISAAFNADG-KYIISASEDSQVYVWKRE 759 (969)
Q Consensus 712 ~IwD~~~~~~~~~~~~~~~~V~sl~fspdg-~~LaSgs~Dg~I~IWdl~ 759 (969)
++|-..+..-.++.........-+.|+|.. ..|..-..+|.+.++++.
T Consensus 317 ~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 317 QLWTTGNYHWYLKQELQFSQKALLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred EEEEecCeEEEEEEEEeccccccccccCCCceeEEEEecCCcEEEEEEE
Confidence 999977643333221111111126777732 334444466666665543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.013 Score=68.20 Aligned_cols=190 Identities=13% Similarity=0.070 Sum_probs=115.2
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEE--
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAA-- 642 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv-- 642 (969)
+..++.++.++.|..+|..+|+.+-.......+.+--.. .+..++.+..++.|..+|..+++.+-......+...+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 567778889999999999999988776544444332111 2466777888999999999999887554433211100
Q ss_pred EEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC--CCCceEEEEeCCCcEEEEeCCc
Q 002086 643 CYTP--DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP--SNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 643 ~fsp--dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp--d~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
.-+| .+..+++++.+|.+..+|..+++......+..... .........+..+| .+ ..+++++.++.++.+|..+
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~-~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG-ATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCC-ccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCC
Confidence 0111 23467778889999999999887643322110000 00000011111112 12 4677778899999999776
Q ss_pred ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 719 IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 719 ~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
.....+.... ....+ ..++..|+.++.+|.|+.+|..+++
T Consensus 276 G~~~W~~~~~--~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 276 GQIVWKREYG--SVNDF--AVDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred CCEEEeecCC--CccCc--EEECCEEEEEcCCCeEEEEECCCCc
Confidence 5544433211 11112 2246678888899999999998853
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.047 Score=58.93 Aligned_cols=204 Identities=17% Similarity=0.265 Sum_probs=117.7
Q ss_pred EeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEee--cCCCeEEEEEecCCCCEEEEEECCCeEEEEeC
Q 002086 549 SFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFA--HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI 624 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~--h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl 624 (969)
.+.+-...+..|+|.| +.++++....+.|...+.. |+.+..+. -.+..-.|++.. ++.++++--.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 4556667799999998 5577777888999888974 77777763 345788899975 5555554445899999998
Q ss_pred CCc----eE---EEE----e-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC---Cceee-eeeeeecccccCCCCC
Q 002086 625 SDR----LV---VDW----T-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED---SKLHQ-LNQVDFQTKKKSSTRK 688 (969)
Q Consensus 625 ~~~----~~---~~~----~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~---~~~~~-~~~~~~~~~~~~h~~~ 688 (969)
... .. ..+ . ..+..+-.++|++.++.|+++-+..-..||.+.. ..... .....+. ........
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD-DDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS-
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc-cccceecc
Confidence 331 11 111 1 1335589999999988888888888778887764 11111 1111111 12345567
Q ss_pred eEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecC-------CCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 689 ITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRN-------TSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~-------~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
+.++.++|..+.+++.......|..+|.... ...+..... -...-.|+|.++|++.++ ++-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 8999999988788888888999999995433 233332221 123568999999865544 466666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00089 Score=77.67 Aligned_cols=112 Identities=17% Similarity=0.317 Sum_probs=83.4
Q ss_pred CEEEEEecC--CcEEEEE----eCCCc----EEEEECCCCcEE----EEeecCCCeEEEEEecCCCCEEEEEECCCeEEE
Q 002086 556 DVLDLSWSR--SHLLLSS----SMDKT----VRLWDMETKSCL----KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRI 621 (969)
Q Consensus 556 ~I~~l~fs~--~~~L~Sg----s~Dgt----V~IWDl~t~~~i----~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~I 621 (969)
...++.|+. +..+.|. +.+|. -.+|++...+.. ..+.....|.|++++| +...|+.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence 345666664 3444443 33443 345666655432 2347899999999999 9999999999999999
Q ss_pred EeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 622 WSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 622 WDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
||...+... .....-.++.++|+|+|..|++|+..|.+.+||+.-..
T Consensus 286 yD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 286 YDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999876433 33445668899999999999999999999999987543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.02 Score=66.11 Aligned_cols=276 Identities=12% Similarity=0.086 Sum_probs=137.4
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
.|+.+.|.++..-|+.|-..|.|.||.+...+.... ....+.....+... ........ .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~--~~~~~~~~~~~~~~--------------~~~~~~~~-----l 61 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN--REQPPDLDYNFRRF--------------SLNNSPGK-----L 61 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S----------------GGGSS-S-----E
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc--cCCCcccCcccccc--------------cccCCCcc-----e
Confidence 589999999988999999999999999875433210 00000000000000 00000000 0
Q ss_pred ccccce---eeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe---e------cCCCeEEE
Q 002086 533 VHVPET---VFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF---A------HNDYVTCI 600 (969)
Q Consensus 533 ~~~~~~---v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~------h~~~V~sv 600 (969)
...... -....-.|...+....++|++++.+.=.+++.|..+|.+.|.|++....+..- . ....|+++
T Consensus 62 ~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 62 TDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp EE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred EEehhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence 000000 00001235556667789999999998789999999999999999888877653 1 23468889
Q ss_pred EEecC----CC---CEEEEEECCCeEEEEeCC--C-c----eEEEEe-cCCCCEEEEE-EccC-----------------
Q 002086 601 QFNPM----DD---DYFISGSLDAKVRIWSIS--D-R----LVVDWT-DLHEMVTAAC-YTPD----------------- 647 (969)
Q Consensus 601 ~fsp~----~~---~~L~sgs~Dg~I~IWDl~--~-~----~~~~~~-~~~~~V~sv~-fspd----------------- 647 (969)
.|.-. ++ -.+++|...|.+.+|.+. . + +..... .+...|..+. |+.+
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred EEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence 88631 22 378899999999999874 1 1 112222 3445555554 3211
Q ss_pred ---CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc----CCCCceEEEEeCCCcEEEEeCCcce
Q 002086 648 ---GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS----PSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 648 ---g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs----pd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
-..+++...+..++++...+.+..... .........+.+- ..+...|++-..+|.|++|.+-.+.
T Consensus 222 g~~i~g~vVvvSe~~irv~~~~~~k~~~K~--------~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 222 GISIPGYVVVVSESDIRVFKPPKSKGAHKS--------FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp T----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred CCCcCcEEEEEcccceEEEeCCCCccccee--------eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 123555566888999998877653321 1111122233342 1233577777999999999977655
Q ss_pred EEEEeecC----CCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 721 HKFRGFRN----TSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 721 ~~~~~~~~----~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
........ ...+...+|+++|..++-.+. ..+.++.+
T Consensus 294 ei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 294 EIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred HhhcccCCCccccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 44433221 112334566777776555543 33444433
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.015 Score=70.04 Aligned_cols=189 Identities=12% Similarity=0.144 Sum_probs=118.5
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCC-eEEEEEecCCCCEEEEEECCCe-----EEEEeCCCc------eEE--
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY-VTCIQFNPMDDDYFISGSLDAK-----VRIWSISDR------LVV-- 630 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~-V~sv~fsp~~~~~L~sgs~Dg~-----I~IWDl~~~------~~~-- 630 (969)
+..++.|+.+|.|.+.+-.-........+... |+.+.... ..++|++.+.|+. |+|||+..- +++
T Consensus 35 ~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~ 113 (933)
T KOG2114|consen 35 TGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYE 113 (933)
T ss_pred CceEEEeeccccEEEecccceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCCcceeee
Confidence 78999999999998887543221222244444 55544443 4468888777754 899998542 222
Q ss_pred -EEecC-----CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 631 -DWTDL-----HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 631 -~~~~~-----~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
....+ ..++.+++.+.+-+.+|+|-.+|.|..+.-.-.+-.... . .-......+|+++++..++... +-
T Consensus 114 ~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr---~-~~~~~~~~pITgL~~~~d~~s~-lF 188 (933)
T KOG2114|consen 114 HRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR---Q-DYSHRGKEPITGLALRSDGKSV-LF 188 (933)
T ss_pred eeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc---e-eeeccCCCCceeeEEecCCcee-EE
Confidence 22332 356889999999999999999999998853211110000 0 0113457899999999888543 33
Q ss_pred EeCCCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 705 TSADSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
...-..|.+|.+........ .-.+...+.|..|++....+++++ +..|++|+.+.
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence 33445667776543222233 334566778888887555455555 45799999885
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.025 Score=66.01 Aligned_cols=194 Identities=20% Similarity=0.232 Sum_probs=116.2
Q ss_pred ceeEeccCCCCEEEEEecC-CcEEEEE---eCC-CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEECCCe-
Q 002086 546 PFCSFIGHLDDVLDLSWSR-SHLLLSS---SMD-KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSLDAK- 618 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~-~~~L~Sg---s~D-gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~Dg~- 618 (969)
....+..-...+..-+|++ +..++.. ... ..+.++|+.+++........+.-..-+|+| ++.+|+ +...||.
T Consensus 184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~ 262 (425)
T COG0823 184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSP 262 (425)
T ss_pred ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCc
Confidence 3334444555666777887 4333322 222 469999999998877776666666779999 776655 4555665
Q ss_pred -EEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE
Q 002086 619 -VRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF 694 (969)
Q Consensus 619 -I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f 694 (969)
|+++|+.++....+....+.-..-.|+|+|++++..+. .| .|.+++......... ......-..-.|
T Consensus 263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri---------T~~~~~~~~p~~ 333 (425)
T COG0823 263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL---------TFSGGGNSNPVW 333 (425)
T ss_pred cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe---------eccCCCCcCccC
Confidence 77778888776665554444457789999999887654 44 567777776654221 111112226679
Q ss_pred cCCCCceEEEEeCCCc--EEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 695 SPSNPSEVLVTSADSR--IRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 695 spd~~~~l~sgs~Dg~--I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
+|++...++....+|. |.+.|...... ............-+|.++|+.++..+.-
T Consensus 334 SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 334 SPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence 9999544444533455 55555433221 2222223333355678888777655543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0065 Score=72.28 Aligned_cols=68 Identities=12% Similarity=0.233 Sum_probs=59.0
Q ss_pred EEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 002086 557 VLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~ 625 (969)
+++++|+| .-.|+.|-.-|.+.+|...+.+..... .|..+|..+.|++ +|+.++++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 34699999 566777888899999999887766655 7999999999999 99999999999999999865
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.098 Score=57.33 Aligned_cols=194 Identities=16% Similarity=0.224 Sum_probs=107.4
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEE---------------EeecCCCeEEEE-EecCCCCEEEEEECCCeE
Q 002086 557 VLDLSWSRS-HLLLSSSMDKTVRLWDMETKSCLK---------------LFAHNDYVTCIQ-FNPMDDDYFISGSLDAKV 619 (969)
Q Consensus 557 I~~l~fs~~-~~L~Sgs~DgtV~IWDl~t~~~i~---------------~~~h~~~V~sv~-fsp~~~~~L~sgs~Dg~I 619 (969)
|..+...+. +.|++- .|+.|.++++..-.... .+.....+...+ -....+...+++....+|
T Consensus 38 I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 888888873 333333 45999999987644333 223334455555 112244455555556689
Q ss_pred EEEeCCCc-----eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc----cccCCCCCeE
Q 002086 620 RIWSISDR-----LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT----KKKSSTRKIT 690 (969)
Q Consensus 620 ~IWDl~~~-----~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~----~~~~h~~~It 690 (969)
.+|..... ...........+..++|. ++.+++|..+ ...+.|+.++............ .......++.
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG 193 (275)
T ss_pred EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceE
Confidence 98888653 345556677889999998 5678888744 5888999877654433211100 0111223444
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCC-cceE--EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGL-DIVH--KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~-~~~~--~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
.+.... + .+|+ +..+-.+ +.|.. .... .+.. .....++++. ..||+..+.+ .|.||++.+++.+
T Consensus 194 ~~~~~~-~-e~Ll-~~~~~g~-fv~~~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lv 260 (275)
T PF00780_consen 194 IFQLSD-N-EFLL-CYDNIGV-FVNKNGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELV 260 (275)
T ss_pred EEEeCC-c-eEEE-EecceEE-EEcCCCCcCcccEEEc---CCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEE
Confidence 444443 3 3443 3333222 33322 2211 1111 1234455553 4588887764 5999999996443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.068 Score=60.20 Aligned_cols=177 Identities=12% Similarity=0.164 Sum_probs=109.5
Q ss_pred CcEEEEEeC----------CCcEEEEECCCC-----cEE--EEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc
Q 002086 565 SHLLLSSSM----------DKTVRLWDMETK-----SCL--KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 565 ~~~L~Sgs~----------DgtV~IWDl~t~-----~~i--~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~ 627 (969)
..+|+.|.. .|.|.++++... +.. ......++|++|+-. .+. |+++. ++.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCc
Confidence 357776652 288999999984 222 233678999999986 344 44443 588999999887
Q ss_pred e-EEEEecCC--CCEEEEEEccCCCEEEEEeCCCcEEEEEcCC--CceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 628 L-VVDWTDLH--EMVTAACYTPDGQNALIGSHKGSCRLYSIED--SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 628 ~-~~~~~~~~--~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~--~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
+ +....... ..+.++... ++++++|.....+.++.... .++.... .......++++.|-+++ ..+
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va-------~d~~~~~v~~~~~l~d~-~~~ 187 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVA-------RDYQPRWVTAAEFLVDE-DTI 187 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEE-------EESS-BEEEEEEEE-SS-SEE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEE-------ecCCCccEEEEEEecCC-cEE
Confidence 7 65544433 345555554 66999999989888885543 2222111 13345668999998777 599
Q ss_pred EEEeCCCcEEEEeCCc----------ceEEEEeecCCCCeEEE---EEeC--CCC------EEEEEeCCCcEEE
Q 002086 703 LVTSADSRIRILDGLD----------IVHKFRGFRNTSSQISA---AFNA--DGK------YIISASEDSQVYV 755 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~----------~~~~~~~~~~~~~V~sl---~fsp--dg~------~LaSgs~Dg~I~I 755 (969)
+++..+|.|.++.... .......+.....|+++ ++.| .+. .++.++.+|.|.+
T Consensus 188 i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 188 IVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 9999999999987321 22233334444567766 4445 222 4888889999884
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.041 Score=63.63 Aligned_cols=203 Identities=16% Similarity=0.203 Sum_probs=119.8
Q ss_pred CEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE--------------------------E-----------------EEe
Q 002086 556 DVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC--------------------------L-----------------KLF 591 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~--------------------------i-----------------~~~ 591 (969)
.|+.+.|.+ ...|+.|...|.|.||.+...+. + ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 477888887 67888899999999886532110 0 011
Q ss_pred -ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC---------CCCEEEEEEcc-----CC---CEEEE
Q 002086 592 -AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL---------HEMVTAACYTP-----DG---QNALI 653 (969)
Q Consensus 592 -~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~---------~~~V~sv~fsp-----dg---~~Las 653 (969)
...++|++++.+ +=.+++.|..+|.+.|.|++...++..... ...++++.|.. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 246889999997 578999999999999999998887754221 23588888873 33 46889
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE-EcCCC-------------------CceEEEEeCCCcEEE
Q 002086 654 GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ-FSPSN-------------------PSEVLVTSADSRIRI 713 (969)
Q Consensus 654 gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~-fspd~-------------------~~~l~sgs~Dg~I~I 713 (969)
|+..|.+.+|.+.-... ..+.+.+......+..+|..+. |+.+. -..+++...+..|++
T Consensus 161 GTn~G~v~~fkIlp~~~-g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSN-GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EETTSEEEEEEEEE-GG-G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EeCCCCEEEEEEecCCC-CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999998852100 0111112222234455555554 32221 023566667888999
Q ss_pred EeCCcceEEEEeecCCCCeEEEEEe-----CCCCEEEEEeCCCcEEEEEcCCC
Q 002086 714 LDGLDIVHKFRGFRNTSSQISAAFN-----ADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 714 wD~~~~~~~~~~~~~~~~V~sl~fs-----pdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+...+.....+.+........+.+- ..+..|++-..+|.|++|.+..-
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 9977665555555332333345552 35678889999999999999874
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0058 Score=75.17 Aligned_cols=147 Identities=20% Similarity=0.193 Sum_probs=101.7
Q ss_pred CCEEEEE-ECCCeEEEEeCCCceEEEEecCCCCEEEEEEccC-------CCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 607 DDYFISG-SLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPD-------GQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 607 ~~~L~sg-s~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspd-------g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
.++|+.- .....|+-.|+..|+++........+.-..|.|+ ....++|-.+..+..||.+-.... .+.-
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k---~v~~ 569 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK---LVDS 569 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc---eeec
Confidence 3444433 3457899999999999876665554445556554 345678888999999999864311 0111
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
..+........+|++-..+| +|++|+.+|.||+||......+........+|+.|..+.||++|++.+ +..|.|++.
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 12223455678888888776 999999999999999443323333334467899999999999988777 567888876
Q ss_pred C
Q 002086 759 E 759 (969)
Q Consensus 759 ~ 759 (969)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 4
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00085 Score=47.75 Aligned_cols=38 Identities=34% Similarity=0.761 Sum_probs=34.4
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEe
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWD 479 (969)
+....+.+|...|+++.|.+++.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45567789999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00027 Score=81.68 Aligned_cols=162 Identities=15% Similarity=0.238 Sum_probs=107.3
Q ss_pred eccCCCCEEEEEecC-C-cEEEEEe----CCCcEEEEECCCCc--EEE---Ee-ecCCCeEEEEEecCCCCEEEEEECCC
Q 002086 550 FIGHLDDVLDLSWSR-S-HLLLSSS----MDKTVRLWDMETKS--CLK---LF-AHNDYVTCIQFNPMDDDYFISGSLDA 617 (969)
Q Consensus 550 l~gH~~~I~~l~fs~-~-~~L~Sgs----~DgtV~IWDl~t~~--~i~---~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg 617 (969)
..+|....++++|++ + +.|++|- .|..+.|||+.++- +.. .. +......+++|.. +..++++|....
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr 176 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSR 176 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccc
Confidence 346778889999998 4 5666652 46789999998872 211 11 2445667899986 888999999999
Q ss_pred eEEEEeCCCceEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEc-CCCceeeeeeeeecccccCCCCCeEEEEEc
Q 002086 618 KVRIWSISDRLVVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSI-EDSKLHQLNQVDFQTKKKSSTRKITGFQFS 695 (969)
Q Consensus 618 ~I~IWDl~~~~~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl-~~~~~~~~~~~~~~~~~~~h~~~It~l~fs 695 (969)
.+.++|++........-....+..+.+.| .+.+++.-. ||.|.+||. +.-+... .. ...........+..++|+
T Consensus 177 ~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl-~~--i~~~~N~~~~~l~~~ayc 252 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL-QI--ILRNENKKPKQLFALAYC 252 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH-HH--HhhCCCCcccceeeEEec
Confidence 99999998543222222223456677888 667777665 999999994 2222110 00 111112233469999999
Q ss_pred CCCCceEEEEeCC-CcEEEEeC
Q 002086 696 PSNPSEVLVTSAD-SRIRILDG 716 (969)
Q Consensus 696 pd~~~~l~sgs~D-g~I~IwD~ 716 (969)
|.....+++...| ++|+++|+
T Consensus 253 Ptrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 253 PTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred cCCcchhhhhccCcceEEEecc
Confidence 9876777777665 57999984
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.12 Score=60.63 Aligned_cols=180 Identities=10% Similarity=0.110 Sum_probs=88.8
Q ss_pred EEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCC
Q 002086 558 LDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHE 637 (969)
Q Consensus 558 ~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~ 637 (969)
..++|...+.+++-...++|.|+.--.....+.+.....+..|-. |.+|+..+. +.|.+||+.+++++.......
T Consensus 72 ~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~ 146 (443)
T PF04053_consen 72 LSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDWETGKLIRRIDVSA 146 (443)
T ss_dssp SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS-E
T ss_pred eEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEhhHcceeeEEecCC
Confidence 457787767788887788999963222222222322223444332 566666654 489999999999998887765
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCC------------ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE
Q 002086 638 MVTAACYTPDGQNALIGSHKGSCRLYSIEDS------------KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~------------~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg 705 (969)
|..+.|+++|++++..+.+ .+.|++.... ..... ..-...|.+.+|..+ -++.+.
T Consensus 147 -vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~---------~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 147 -VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI---------HEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp --EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE---------EEE-S--SEEEEETT--EEEEE-
T ss_pred -CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE---------EEecceeEEEEEEcC--EEEEEc
Confidence 8999999999999988754 6777765433 11111 111345666677653 233333
Q ss_pred eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 706 SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 706 s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.. .|+.+-..+ ...+... ..++.=+.+.+..+.|.....|+.|..+.++.
T Consensus 214 -~~-~lkYl~~Ge-~~~i~~l--d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 214 -SN-HLKYLVNGE-TGIIAHL--DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -TT-EEEEEETTE-EEEEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred -CC-eEEEEEcCC-cceEEEc--CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 22 555433221 1112222 22344455666667777778888888877764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.089 Score=55.51 Aligned_cols=220 Identities=13% Similarity=0.073 Sum_probs=129.6
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCC
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h 685 (969)
...+++.|+..+.+.-.|..+|.+.-.......+.+-+.- -|++++.|+..|.+++.+..++.........
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-------- 92 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-------- 92 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh--------
Confidence 4578888999999999999999888766666666554444 4678999999999999999999665443321
Q ss_pred CCCeE-EEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 686 TRKIT-GFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 686 ~~~It-~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
..|. .....+++ ..+..|+.|++.+..|.......++.........+-++.| ++. |..+...|.|.--..++..
T Consensus 93 -~~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~~~- 168 (354)
T KOG4649|consen 93 -ETVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTKNPYS- 168 (354)
T ss_pred -hhhccceEEcCCC-ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEEEEccCCCC-
Confidence 1111 12345555 7999999999999999888887777554444334445566 443 3333344444433333210
Q ss_pred cCCCceeEEecccCCce---eeeeeEEe--ecCCCcccCCCCCccEEEcccccccCCCCcccccC-CCCCCccccCCCCc
Q 002086 764 ASTGKRAIITTRNHEHF---QCKDVSVA--IPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSS-PTKEGSPAGHSRRL 837 (969)
Q Consensus 764 ~~t~k~~~~~~~~~~~~---~~~~~s~~--~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~S-P~~~~i~~~~~~~~ 837 (969)
...+....+....| .|..-++. .....+++-++.+.++|..... ++-+..++.| |..+-+++..++=.
T Consensus 169 ---~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~---GpIf~~Pc~s~Ps~q~i~~~~~~Cf 242 (354)
T KOG4649|consen 169 ---STEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATK---GPIFMEPCESRPSCQQISLENENCF 242 (354)
T ss_pred ---cceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCC---CceecccccCCCcceEEEEecCCeE
Confidence 01111111111111 12222222 2333344445667777744433 2234444444 76666776666666
Q ss_pred cccCCCC
Q 002086 838 LPPLPKK 844 (969)
Q Consensus 838 L~~~~~~ 844 (969)
.++.|-.
T Consensus 243 ~~~~p~~ 249 (354)
T KOG4649|consen 243 CAPLPIA 249 (354)
T ss_pred EEecccc
Confidence 6555543
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.12 Score=58.32 Aligned_cols=173 Identities=22% Similarity=0.310 Sum_probs=114.0
Q ss_pred CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCC------CCEEEEEEC----------CCeEEEEeCCCc-----e--E
Q 002086 575 KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMD------DDYFISGSL----------DAKVRIWSISDR-----L--V 629 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~------~~~L~sgs~----------Dg~I~IWDl~~~-----~--~ 629 (969)
..|++.|..+.+.+..+ .....+.+++..... ..+|++|.. .|.|.++++... + .
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36889999988888766 444556655543311 457777653 288999999884 2 3
Q ss_pred EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 630 VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK-LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 630 ~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~-~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
+......++|++++-- ++ +|+++. .+.|.+|++...+ +...... .....++++.... .++++|...
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~-------~~~~~i~sl~~~~---~~I~vgD~~ 148 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFY-------DSPFYITSLSVFK---NYILVGDAM 148 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE--------BSSSEEEEEEET---TEEEEEESS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhhee-------cceEEEEEEeccc---cEEEEEEcc
Confidence 3445567889998877 33 455544 5899999999888 4433322 1223677777664 489999888
Q ss_pred CcEEEE--eCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 709 SRIRIL--DGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 709 g~I~Iw--D~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..+.++ +.... ...+........++++.|-+|+..++.+..+|.|.++....
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 888876 43222 33333333456688999987778999999999999999974
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.52 Score=52.62 Aligned_cols=185 Identities=12% Similarity=0.070 Sum_probs=109.7
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC-CceEEE----Eec-CCCCE-EEEEEcc
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS-DRLVVD----WTD-LHEMV-TAACYTP 646 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~-~~~~~~----~~~-~~~~V-~sv~fsp 646 (969)
-..|-|-|+..++.+..+.-.+...- -|..+.-|.+-+.||.+....+. .|+... .+. ..+++ ..-++..
T Consensus 117 a~SVtVVDl~~~kvv~ei~~PGC~~i---yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTPGCWLI---YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGTSEEEE---EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred CCeEEEEECCCCceeeeecCCCEEEE---EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 34578888888888877765553332 23234678899999999999887 444332 111 12222 2344555
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc----ccCCCCCeEEEEEcCCCCceEEEEe--C-----CC--cEEE
Q 002086 647 DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK----KKSSTRKITGFQFSPSNPSEVLVTS--A-----DS--RIRI 713 (969)
Q Consensus 647 dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~----~~~h~~~It~l~fspd~~~~l~sgs--~-----Dg--~I~I 713 (969)
.+..++.-+.+|.|+-.|+..........+.+... .....+...-+++++....+++.-. . |+ .|.+
T Consensus 194 ~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 194 DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 66677778899999999998887655544443221 1222344455677765534443321 1 22 2666
Q ss_pred EeCCcceEEEEeecCCCCeEEEEEeCCCC-EEEEE-eCCCcEEEEEcCCCC
Q 002086 714 LDGLDIVHKFRGFRNTSSQISAAFNADGK-YIISA-SEDSQVYVWKREEHR 762 (969)
Q Consensus 714 wD~~~~~~~~~~~~~~~~V~sl~fspdg~-~LaSg-s~Dg~I~IWdl~t~~ 762 (969)
+|..+.....+... ...+.++..+.|.+ +|++. ..++.|.+||..+++
T Consensus 274 ~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 274 YDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 77766555544432 23466889998765 66554 457999999999953
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.013 Score=69.97 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=58.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
+++++|+|..-.|+.|-.-|.+.+|...+.+...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht---------------------------------------------- 95 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT---------------------------------------------- 95 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeee----------------------------------------------
Confidence 4569999998899999999999999987644322
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME 583 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~ 583 (969)
....|..+|..+.|++ |..++|+..-|.|.+|...
T Consensus 96 ---------------v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 ---------------VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ---------------eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 2235899999999999 9999999999999999876
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.59 Score=53.09 Aligned_cols=177 Identities=11% Similarity=0.094 Sum_probs=87.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecC-CCCEEEEEE----------------------CCCeEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPM-DDDYFISGS----------------------LDAKVR 620 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~-~~~~L~sgs----------------------~Dg~I~ 620 (969)
++.++-......|+-.|+.+.+...++. ....+-...|... ++.+++-.- -...|.
T Consensus 92 ~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~ 171 (386)
T PF14583_consen 92 DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIF 171 (386)
T ss_dssp SSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEE
T ss_pred CCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEE
Confidence 4555444455678888888887766663 3334434555431 333333221 124567
Q ss_pred EEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCC--CceeeeeeeeecccccCCCCCeEEEE
Q 002086 621 IWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG-----SCRLYSIED--SKLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 621 IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg-----~I~IwDl~~--~~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
..|+.+++...+......+..+.|+|....+++=|..| .-+||-+.. ........ ......+..=-
T Consensus 172 ~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-------~~~~e~~gHEf 244 (386)
T PF14583_consen 172 TIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-------RMEGESVGHEF 244 (386)
T ss_dssp EEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----------TTEEEEEEE
T ss_pred EEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-------CCCCccccccc
Confidence 77889999888888889999999999877777655544 235665543 33222110 11233344455
Q ss_pred EcCCCCceEEEEeC----CCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 694 FSPSNPSEVLVTSA----DSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 694 fspd~~~~l~sgs~----Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
|.|+|..++..+.. +..|.-+|..+........ .. ....+--++||++++-=+.|
T Consensus 245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-MP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-E--SEEEEEE-TTSSEEEEEE--
T ss_pred ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-CC-ceeeeEEcCCCCEEEecCCC
Confidence 88888655554432 2335556655443322111 11 23455667899988765554
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.21 Score=59.79 Aligned_cols=177 Identities=12% Similarity=0.161 Sum_probs=99.9
Q ss_pred CCCcEEEEECCCCcEEEEeecCC---------------------Ce-EEEEEecCCCCEEEEEECCC-------------
Q 002086 573 MDKTVRLWDMETKSCLKLFAHND---------------------YV-TCIQFNPMDDDYFISGSLDA------------- 617 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~~---------------------~V-~sv~fsp~~~~~L~sgs~Dg------------- 617 (969)
.++.|..+|..+|+.+-.+.... .| ...++.+ .+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence 46788889999988876653211 01 1234444 456777777665
Q ss_pred -----eEEEEeCCCceEEEEecCC-CCE------EEEEEc----cCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 618 -----KVRIWSISDRLVVDWTDLH-EMV------TAACYT----PDGQ---NALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 618 -----~I~IWDl~~~~~~~~~~~~-~~V------~sv~fs----pdg~---~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
.|.-+|+.+++++-..... ... ....+. -++. .+++++.+|.+..+|..+++..-......
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~ 331 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE 331 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence 7999999999877554321 100 011111 1333 57788899999999999998765433210
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEE------------------eCCCcEEEEeCCcceEEEEeecCC--------CCe
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVT------------------SADSRIRILDGLDIVHKFRGFRNT--------SSQ 732 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sg------------------s~Dg~I~IwD~~~~~~~~~~~~~~--------~~V 732 (969)
..+...| + .++++ ..+|.|.-.|..+.....+..... ...
T Consensus 332 -----------~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 332 -----------QPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred -----------cccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcc
Confidence 0112222 1 12211 234556666655444333322110 111
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
..-.....+.+|+.++.||.|+.+|.++++.+
T Consensus 398 ~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 398 WGGSLATAGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence 11111225678999999999999999995443
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.27 Score=56.81 Aligned_cols=199 Identities=12% Similarity=0.144 Sum_probs=136.9
Q ss_pred EEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEEC---CCeEEEEeCCCceEEEE
Q 002086 558 LDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSL---DAKVRIWSISDRLVVDW 632 (969)
Q Consensus 558 ~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~---Dg~I~IWDl~~~~~~~~ 632 (969)
..+..++ +. .+++...+..|.+.|..+...+....-......+++++ ++..+..+.. ++++.+.|..++.+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 3456665 44 56666667999999999888888876666888999999 7766665544 68899999998887776
Q ss_pred ecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC--C
Q 002086 633 TDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD--S 709 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D--g 709 (969)
.........+++.|+|+.+++.. .++.|.+.|........ .. ..........-..+.+.|++...+++...+ +
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 44443348999999999776655 78899999977765542 11 000122334456788999985455554444 6
Q ss_pred cEEEEeCCcceEEEEeecCCC-CeEEEEEeCCCCEEEEEeCC-CcEEEEEcCCC
Q 002086 710 RIRILDGLDIVHKFRGFRNTS-SQISAAFNADGKYIISASED-SQVYVWKREEH 761 (969)
Q Consensus 710 ~I~IwD~~~~~~~~~~~~~~~-~V~sl~fspdg~~LaSgs~D-g~I~IWdl~t~ 761 (969)
.+...|............-.. ....+.++|+|.++...... +.+.+-|..+.
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 888888665433332111111 34568899999999888554 78888888774
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.046 Score=50.88 Aligned_cols=102 Identities=18% Similarity=0.265 Sum_probs=71.8
Q ss_pred eEEEEEecCCC---CEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 597 VTCIQFNPMDD---DYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 597 V~sv~fsp~~~---~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
|++|++...++ +.|++|+.|..|++|+-. .++........|++++-... ..|+.+..+|+|-+|+-.....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW--- 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW--- 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee---
Confidence 66777765433 689999999999999854 56666666777888888776 6799999999999998643221
Q ss_pred eeeeecccccCCCCCeEEEEEc---CCCCceEEEEeCCCcEE
Q 002086 674 NQVDFQTKKKSSTRKITGFQFS---PSNPSEVLVTSADSRIR 712 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fs---pd~~~~l~sgs~Dg~I~ 712 (969)
. ......++++++. .++-..|++|-.+|.|-
T Consensus 76 -----R---iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 -----R---IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -----e---eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1 1122335555544 34555789998888774
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.011 Score=69.73 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=101.4
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE--
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV-- 629 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~-- 629 (969)
..|.--++.. +++++.|+.-|.|++|+-..++....- +-.+.+..+..++ +..+++.|+..|.|.++-+..+..
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCc
Confidence 3344334443 799999999999999999988876554 2445555666777 778888999999999998876432
Q ss_pred ---EE--EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 630 ---VD--WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 630 ---~~--~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
+. -..|...|++++|++++..+++|...|.|..-.+........ ...........|..+.+.. .+|++
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~----~~q~il~~ds~IVQlD~~q---~~LLV 185 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLS----KSQEILSEDSEIVQLDYLQ---SYLLV 185 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcc----ccceeeccCcceEEeeccc---ceehH
Confidence 11 122567899999999999999999999999988876211100 0111133456677777664 34555
Q ss_pred EeCCCcE
Q 002086 705 TSADSRI 711 (969)
Q Consensus 705 gs~Dg~I 711 (969)
++.-..|
T Consensus 186 Stl~r~~ 192 (726)
T KOG3621|consen 186 STLTRCI 192 (726)
T ss_pred hhhhhhh
Confidence 4444443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.27 Score=52.02 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=83.0
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCE-EEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMV-TAAC 643 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V-~sv~ 643 (969)
..+++.|+..+.+.--|..+|+.+...--...|.+-+.- -+++++.|...|.+++.+.++|.....+...+.| ....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 478888999999999999999988766555666665555 4788999999999999999999655444333333 3445
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 644 YTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 644 fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
..+++..+.+|+.|++.+..|.++...+.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEE
Confidence 67789999999999999999998877654
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.054 Score=66.92 Aligned_cols=133 Identities=19% Similarity=0.208 Sum_probs=90.5
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCC--eEEEEEe----cCCCCEEEEEECCCeEEEEeCCCc--eEEE----EecCCCCE
Q 002086 572 SMDKTVRLWDMETKSCLKLFAHNDY--VTCIQFN----PMDDDYFISGSLDAKVRIWSISDR--LVVD----WTDLHEMV 639 (969)
Q Consensus 572 s~DgtV~IWDl~t~~~i~~~~h~~~--V~sv~fs----p~~~~~L~sgs~Dg~I~IWDl~~~--~~~~----~~~~~~~V 639 (969)
.....|+-.|+..|+.+..+..... |..++-. ..+....+.|-.+..|..||.+-. +++. .+......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 3567899999999999998854333 4444322 123456677888889999999863 3432 22233557
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 640 TAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 640 ~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.|++-..+| +||+|+.+|.||+||--..+ -.....+-..+|.+|..+.|| .+|++++ +..|.|++
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~--------AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKR--------AKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLID 645 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchh--------hhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEE
Confidence 888888776 89999999999999943211 222335668999999999998 5555554 44555555
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.089 Score=48.99 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=72.3
Q ss_pred EEEEEecC-----CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE
Q 002086 557 VLDLSWSR-----SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD 631 (969)
Q Consensus 557 I~~l~fs~-----~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~ 631 (969)
|+++++.. .+.|++|+.|..|++|+-. +.+..+...+.|++++-.. ...|+.+..+|+|-+|+-... +-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R-lWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR-LWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce-eee
Confidence 56677654 3789999999999999865 6777788889999998875 588999999999999986332 222
Q ss_pred EecCCCCEEEEEEcc-CC---CEEEEEeCCCcEE
Q 002086 632 WTDLHEMVTAACYTP-DG---QNALIGSHKGSCR 661 (969)
Q Consensus 632 ~~~~~~~V~sv~fsp-dg---~~Lasgs~dg~I~ 661 (969)
. .....+.++++.. ++ ..|++|-.+|.|-
T Consensus 77 i-KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 I-KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e-ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 2333466665543 32 3688888888764
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.98 Score=48.85 Aligned_cols=199 Identities=12% Similarity=0.082 Sum_probs=121.3
Q ss_pred eeeeEeccccc--CEEEEEEeCCCCEEEEEeCCC--cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 442 HLCQEIQAHEG--SIWTIKFSLDARFLASAGEDR--VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 442 ~l~~~L~gH~~--~I~~l~fSpDg~~LaTgs~Dg--tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
+.++++. |.. -..++.|..+|.++-+.|.-| .|+.+|+.+|+.+........
T Consensus 34 ~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~----------------------- 89 (264)
T PF05096_consen 34 EVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR----------------------- 89 (264)
T ss_dssp EEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----------------------
T ss_pred EEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-----------------------
Confidence 3444544 433 356788878899888888766 799999999987764321100
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCe
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYV 597 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V 597 (969)
.|. + -+.-+.+.|+.+.| .++...+||..+.+.+..+...+.=
T Consensus 90 ---------------------~Fg---E---Git~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EG 132 (264)
T PF05096_consen 90 ---------------------YFG---E---GITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEG 132 (264)
T ss_dssp -----------------------E---E---EEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS-
T ss_pred ---------------------ccc---e---eEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcc
Confidence 000 0 11123445566666 4578899999999999999888888
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec---CC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD---LH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
+.++. ++..|+.......|+++|..+-+...... .. ..++.+.|. +|...|=.=....|...|..+++..
T Consensus 133 WGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 133 WGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV 208 (264)
T ss_dssp -EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE
T ss_pred eEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE
Confidence 88885 56677776667889999988765443222 22 346667776 5655555556778888899998876
Q ss_pred eeeeeeeccc-------ccCCCCCeEEEEEcCCCCceEEEE
Q 002086 672 QLNQVDFQTK-------KKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 672 ~~~~~~~~~~-------~~~h~~~It~l~fspd~~~~l~sg 705 (969)
....+.-... ......-.+.|++.|..+.++++|
T Consensus 209 ~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 209 GWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5443321111 111245688999999886666666
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.056 Score=62.07 Aligned_cols=146 Identities=19% Similarity=0.208 Sum_probs=101.3
Q ss_pred EEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCC-------EEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 609 YFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQ-------NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~-------~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+|.++.....|+-.|+..|+++........|+-+.+.|+.+ .-++|-.+..|.-||.+-....... + .+.+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~-~-~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA-V-VQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceee-e-eecc
Confidence 34456666779999999999998777777788889988753 2456778999999999843321100 0 1112
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.........|++-..+| ++++|+.+|.|++||......+........+|..+..+.||++|++.+ +.++.+-++.
T Consensus 426 qy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 23334556677766665 999999999999999533333333344566799999999999988776 5566666654
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.68 Score=55.47 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=93.4
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCC------eE-EEEEecCCCCEEEEEE---------CCCeEEEEeCCCceE
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLFAHNDY------VT-CIQFNPMDDDYFISGS---------LDAKVRIWSISDRLV 629 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~------V~-sv~fsp~~~~~L~sgs---------~Dg~I~IWDl~~~~~ 629 (969)
..++.++.++.|.-+|.++|+.+-.+.-... +. +..+. +..++.++ .+|.|..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 7888889999999999999999877743332 11 12222 24555554 468899999999987
Q ss_pred EEEecCC-C--------------------CE-EEEEEccCCCEEEEEeCCC------------------cEEEEEcCCCc
Q 002086 630 VDWTDLH-E--------------------MV-TAACYTPDGQNALIGSHKG------------------SCRLYSIEDSK 669 (969)
Q Consensus 630 ~~~~~~~-~--------------------~V-~sv~fspdg~~Lasgs~dg------------------~I~IwDl~~~~ 669 (969)
+-..... . .+ ...++.+.+..+++++.++ .|.-+|..+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 6543321 0 01 1345555667888887665 68889999998
Q ss_pred eeeeeeeeeccc--ccCCCCCe-EEEEEcCCCC--ceEEEEeCCCcEEEEeCCcceEEEE
Q 002086 670 LHQLNQVDFQTK--KKSSTRKI-TGFQFSPSNP--SEVLVTSADSRIRILDGLDIVHKFR 724 (969)
Q Consensus 670 ~~~~~~~~~~~~--~~~h~~~I-t~l~fspd~~--~~l~sgs~Dg~I~IwD~~~~~~~~~ 724 (969)
..-..+...... ......++ ..+. .-++. ..+++++.+|.++.+|..+......
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 765443211000 00011111 1111 01121 2577888899999999777665554
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.032 Score=66.06 Aligned_cols=114 Identities=10% Similarity=0.189 Sum_probs=89.3
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCceEEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD--LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~--~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
+++. .+.+++.|+.-|.|++|+-..++...... ....+..++++++..++|+|+..|.|.++-+.......... +
T Consensus 40 c~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~--~ 116 (726)
T KOG3621|consen 40 CVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY--V 116 (726)
T ss_pred Eeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee--e
Confidence 4444 78999999999999999998887766555 55667788899999999999999999999988744332222 2
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
....+.|...|++++|++++ ..+++|...|.|.+-.+..
T Consensus 117 t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence 22234588999999999998 8999999999988776443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.22 Score=56.96 Aligned_cols=162 Identities=19% Similarity=0.235 Sum_probs=86.6
Q ss_pred cEEEEECCCCcEEEEe------ecCCCeEEEEEecCCCCEEEEE--ECCC---eEEEEeCCCceEE--EEecCCCC---E
Q 002086 576 TVRLWDMETKSCLKLF------AHNDYVTCIQFNPMDDDYFISG--SLDA---KVRIWSISDRLVV--DWTDLHEM---V 639 (969)
Q Consensus 576 tV~IWDl~t~~~i~~~------~h~~~V~sv~fsp~~~~~L~sg--s~Dg---~I~IWDl~~~~~~--~~~~~~~~---V 639 (969)
.+.|+|+.+++....- .-...+..+.|.+ ++..|+.. ..+. .+.++|..++... ........ .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 3667888888753322 2456789999998 66634433 3332 3677788765432 22222222 2
Q ss_pred EEEEEc-cCCCEEE-EEeCCCc--EEEEEcCCCceeeeeeeeecccccCCCCCeEE-EEEcCCCCceEEEEeCCC----c
Q 002086 640 TAACYT-PDGQNAL-IGSHKGS--CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG-FQFSPSNPSEVLVTSADS----R 710 (969)
Q Consensus 640 ~sv~fs-pdg~~La-sgs~dg~--I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~-l~fspd~~~~l~sgs~Dg----~ 710 (969)
....|. +++..++ ....+|. |.+++...+..... ....-.|.. +.+++++...++++..+. .
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l---------T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL---------TSGDWEVTSILGWDEDNNRIYFTANGDNPGERH 308 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES---------S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc---------ccCceeecccceEcCCCCEEEEEecCCCCCceE
Confidence 345554 6665544 4556774 55556655543211 223444544 678888766677776533 4
Q ss_pred EEEEeCC-cceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 711 IRILDGL-DIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 711 I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
|+.-++. .... ............+.|||+|++++-..
T Consensus 309 lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 309 LYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEEE
Confidence 5555555 2222 11111122125899999999987544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.5 Score=47.39 Aligned_cols=205 Identities=11% Similarity=0.181 Sum_probs=107.2
Q ss_pred eEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 445 QEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+.|.+-...|.+|.|.|+.. ++++....+.|...+. +|+++..+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~--------------------------------- 60 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP--------------------------------- 60 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE---------------------------------
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe---------------------------------
Confidence 45667777899999999755 6666667787777775 466665322
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC--c--E--EEEe-----
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK--S--C--LKLF----- 591 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~--~--~--i~~~----- 591 (969)
+.+ .+..-+|++.. +.++++.-.++.+.++++... . . ...+
T Consensus 61 --------------------------l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (248)
T PF06977_consen 61 --------------------------LDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP 113 (248)
T ss_dssp ---------------------------SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S
T ss_pred --------------------------CCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc
Confidence 222 24567788877 444554446899999988331 1 1 1112
Q ss_pred -ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC---c-eE--EEEe------cCCCCEEEEEEccCCC-EEEEEeCC
Q 002086 592 -AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD---R-LV--VDWT------DLHEMVTAACYTPDGQ-NALIGSHK 657 (969)
Q Consensus 592 -~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~---~-~~--~~~~------~~~~~V~sv~fspdg~-~Lasgs~d 657 (969)
.++..+-.|+|++ .++.|+.+-...-..||.+.. . .. .... .....+..++++|... +++.....
T Consensus 114 ~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es 192 (248)
T PF06977_consen 114 NKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES 192 (248)
T ss_dssp ---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT
T ss_pred cCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCC
Confidence 2556799999999 666666666666666666643 1 11 1111 1224578999999754 55566677
Q ss_pred CcEEEEEcCCCceeeeeeeeec-ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQ-TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~-~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw 714 (969)
..|.++| ..++......+.-. ..........-+|+|.++| .|.+.+.-+..++|
T Consensus 193 ~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G--~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 193 RLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG--NLYIVSEPNLFYRF 247 (248)
T ss_dssp TEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred CeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC--CEEEEcCCceEEEe
Confidence 8888899 45555443332110 0011223457789999987 45555565555544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.12 Score=61.80 Aligned_cols=150 Identities=9% Similarity=-0.003 Sum_probs=94.8
Q ss_pred CcEEEEEeCCCcEEEEEC---CCCcEEEEeecCCCeEEEEEecC-------CCCEEEEEECCCeEEEEeCCC-----ceE
Q 002086 565 SHLLLSSSMDKTVRLWDM---ETKSCLKLFAHNDYVTCIQFNPM-------DDDYFISGSLDAKVRIWSISD-----RLV 629 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl---~t~~~i~~~~h~~~V~sv~fsp~-------~~~~L~sgs~Dg~I~IWDl~~-----~~~ 629 (969)
.-.++..+.||....... +.+..+..+.-...=..+.|+.. ++++... .++.|.+.|..+ ..+
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v 313 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSAL 313 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcce
Confidence 334555666766555443 44554444422222245555441 4555444 367899999998 467
Q ss_pred EEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeee----cccccCCCCCeEEEEEcCCCCceEEE
Q 002086 630 VDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDF----QTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 630 ~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~----~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
+...........+.++|||+++++++ .+.+|.|+|+...+......+.+ ... ..-...-...+|.++| ..+.+
T Consensus 314 ~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae-vevGlGPLHTaFDg~G-~ayts 391 (635)
T PRK02888 314 TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE-PELGLGPLHTAFDGRG-NAYTT 391 (635)
T ss_pred EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe-eccCCCcceEEECCCC-CEEEe
Confidence 77777888899999999999988755 58999999998755311000000 000 1113344567788887 67777
Q ss_pred EeCCCcEEEEeCCc
Q 002086 705 TSADSRIRILDGLD 718 (969)
Q Consensus 705 gs~Dg~I~IwD~~~ 718 (969)
-..|..|..|++..
T Consensus 392 lf~dsqv~kwn~~~ 405 (635)
T PRK02888 392 LFLDSQIVKWNIEA 405 (635)
T ss_pred EeecceeEEEehHH
Confidence 78999999999654
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.53 Score=54.96 Aligned_cols=173 Identities=13% Similarity=0.150 Sum_probs=91.6
Q ss_pred cEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC---CCC-----EEEEEEc
Q 002086 576 TVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL---HEM-----VTAACYT 645 (969)
Q Consensus 576 tV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~---~~~-----V~sv~fs 645 (969)
.|.||+..... +..+ .+ +.|.++.|.. ...|++...||.+++||+.... ....+. ... +....+.
T Consensus 62 ~I~iys~sG~l-l~~i~w~~-~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKL-LSSIPWDS-GRIVGMGWTD--DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCE-eEEEEECC-CCEEEEEECC--CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 48888876544 4433 34 8999999985 5677788899999999997554 111111 111 2222333
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCcee-ee-eeeee-cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE
Q 002086 646 PDGQNALIGSHKGSCRLYSIEDSKLH-QL-NQVDF-QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK 722 (969)
Q Consensus 646 pdg~~Lasgs~dg~I~IwDl~~~~~~-~~-~~~~~-~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~ 722 (969)
.+| +++-..++.+.+..--..... .. ..... ...............++.+. ...+....++.+.+.+......
T Consensus 137 ~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~~- 212 (410)
T PF04841_consen 137 KNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFKQ- 212 (410)
T ss_pred CCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEcccccc-
Confidence 345 333334555444432221110 00 00000 00000011100012344433 3444445556666444322211
Q ss_pred EEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 723 FRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 723 ~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
....+++..+++||+|++||.-..+|.+.|...+-
T Consensus 213 ---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 213 ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred ---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 12345799999999999999999999999987653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.39 E-value=2.9 Score=48.73 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=98.6
Q ss_pred EEecC-CcEEEEEeCC-----------CcEEEEECCCCcE--EEEee--cCCC-eEEEEEecCCCCEEEEEEC-C---Ce
Q 002086 560 LSWSR-SHLLLSSSMD-----------KTVRLWDMETKSC--LKLFA--HNDY-VTCIQFNPMDDDYFISGSL-D---AK 618 (969)
Q Consensus 560 l~fs~-~~~L~Sgs~D-----------gtV~IWDl~t~~~--i~~~~--h~~~-V~sv~fsp~~~~~L~sgs~-D---g~ 618 (969)
+.|.+ ++.|+....+ ..|+.|.+.+... ..++. .... ...+..++ ++.+|+.... . ..
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEE
T ss_pred EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCe
Confidence 78887 4555444432 3488889887653 34442 2233 66788888 8887665332 2 34
Q ss_pred EEEEeCCCc-----eEEEEecCCCCEEEEEEccCCCEEEEEe---CCCcEEEEEcCCCceeeeeeeeecccccCCCC--C
Q 002086 619 VRIWSISDR-----LVVDWTDLHEMVTAACYTPDGQNALIGS---HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR--K 688 (969)
Q Consensus 619 I~IWDl~~~-----~~~~~~~~~~~V~sv~fspdg~~Lasgs---~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~--~ 688 (969)
|.+.|+..+ ....+......+....-+..+.+++... ..+.|...++........... ...+.. .
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~-----l~~~~~~~~ 328 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV-----LIPEDEDVS 328 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE-----EE--SSSEE
T ss_pred EEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeE-----EcCCCCcee
Confidence 888888774 4444444444444333333443443332 345677777776653111100 022233 3
Q ss_pred eEEEEEcCCCCceEEEEeCCC--cEEEEeCC-cceEEEEeecCCCCeEEEEEeCCCCEEE-EEeC---CCcEEEEEcCCC
Q 002086 689 ITGFQFSPSNPSEVLVTSADS--RIRILDGL-DIVHKFRGFRNTSSQISAAFNADGKYII-SASE---DSQVYVWKREEH 761 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg--~I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg~~La-Sgs~---Dg~I~IWdl~t~ 761 (969)
+..+... +..+++....++ .|++++.. ............+.|..+...+++..|. +-+. -++|+.||+.++
T Consensus 329 l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 329 LEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 5555544 324555555555 48888977 4333332233344455555555554433 3322 357888999884
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.023 Score=66.43 Aligned_cols=91 Identities=11% Similarity=0.208 Sum_probs=76.9
Q ss_pred CCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeE-EEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 554 LDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVT-CIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 554 ~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~-sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
...|.-+.|+| -.++|++..+|.|.+..+. .+.+.++. +...++ +++|.| +|+.|++|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 35678899999 7899999999999999998 66777775 777777 999999 9999999999999999999998777
Q ss_pred EE--ecCCCCEEEEEEcc
Q 002086 631 DW--TDLHEMVTAACYTP 646 (969)
Q Consensus 631 ~~--~~~~~~V~sv~fsp 646 (969)
.. ......|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 65 44456778887763
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=2.2 Score=49.29 Aligned_cols=155 Identities=14% Similarity=0.198 Sum_probs=106.5
Q ss_pred EEEEEecC-CcEEEEEeC---CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEE-CCCeEEEEeCCCceEEE
Q 002086 557 VLDLSWSR-SHLLLSSSM---DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGS-LDAKVRIWSISDRLVVD 631 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~---DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IWDl~~~~~~~ 631 (969)
-..+++++ ++.+..+.. +++|.+.|..+++.+....-...-..+++.| ++..++.+. .++.|.+.|.....+..
T Consensus 118 P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 118 PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec
Confidence 34677887 555555544 7999999999999888764333238999999 888655554 78999999988776664
Q ss_pred -----EecCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 632 -----WTDLHEMVTAACYTPDGQNALIGSHK---GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 632 -----~~~~~~~V~sv~fspdg~~Lasgs~d---g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
..........+.+.|+|.++.+.... +.+...|..++........ .... ....+.+.|++....+
T Consensus 197 ~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~------~~~~-~~~~v~~~p~g~~~yv 269 (381)
T COG3391 197 GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP------VGSG-APRGVAVDPAGKAAYV 269 (381)
T ss_pred cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc------cccC-CCCceeECCCCCEEEE
Confidence 23333456789999999977665443 5899999988776433110 1222 4567889999844444
Q ss_pred EEeCCCcEEEEeCCcc
Q 002086 704 VTSADSRIRILDGLDI 719 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~ 719 (969)
.-+..+.+.+.|....
T Consensus 270 ~~~~~~~V~vid~~~~ 285 (381)
T COG3391 270 ANSQGGTVSVIDGATD 285 (381)
T ss_pred EecCCCeEEEEeCCCC
Confidence 4456688888886553
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.7 Score=48.67 Aligned_cols=174 Identities=13% Similarity=0.132 Sum_probs=94.5
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEe------ecCCCeEEEEEecCCCCEEEEEEC-----------CCeEEEEeCCCc
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLF------AHNDYVTCIQFNPMDDDYFISGSL-----------DAKVRIWSISDR 627 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~------~h~~~V~sv~fsp~~~~~L~sgs~-----------Dg~I~IWDl~~~ 627 (969)
+..|+++.. -+.+++.+++..+..+ .-....+.+.+.| ++.+.++... -|.|+.+|. .+
T Consensus 77 ~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g 152 (307)
T COG3386 77 GGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG 152 (307)
T ss_pred CCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CC
Confidence 455555443 3566777666663333 1224556778888 6766655433 144555555 34
Q ss_pred eEEEEe-cCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCC--CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 628 LVVDWT-DLHEMVTAACYTPDGQNALIGSH-KGSCRLYSIED--SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 628 ~~~~~~-~~~~~V~sv~fspdg~~Lasgs~-dg~I~IwDl~~--~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
...... .+-...+.|+|+||++.|..+.. .+.|.-|++.. +....... ........+..-.++...++ .+.+
T Consensus 153 ~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~---~~~~~~~~G~PDG~~vDadG-~lw~ 228 (307)
T COG3386 153 GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG---FVDFDEEPGLPDGMAVDADG-NLWV 228 (307)
T ss_pred CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce---EEEccCCCCCCCceEEeCCC-CEEE
Confidence 444433 33556688999999988777654 47888888763 11111100 00112234455566666666 4443
Q ss_pred EEeCCC-cEEEEeCC-cceEEEEeecCCCCeEEEEEe-CCCCEEEEEe
Q 002086 704 VTSADS-RIRILDGL-DIVHKFRGFRNTSSQISAAFN-ADGKYIISAS 748 (969)
Q Consensus 704 sgs~Dg-~I~IwD~~-~~~~~~~~~~~~~~V~sl~fs-pdg~~LaSgs 748 (969)
++..+| .|.+|+.. +....+... ...+++++|- ++.+.|+..+
T Consensus 229 ~a~~~g~~v~~~~pdG~l~~~i~lP--~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 229 AAVWGGGRVVRFNPDGKLLGEIKLP--VKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ecccCCceEEEECCCCcEEEEEECC--CCCCccceEeCCCcCEEEEEe
Confidence 444443 88888866 223333322 2556777774 4455554444
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.015 Score=40.94 Aligned_cols=36 Identities=33% Similarity=0.561 Sum_probs=31.8
Q ss_pred ceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEE
Q 002086 546 PFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWD 581 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWD 581 (969)
+...+..|...|.++.|.+ +.++++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456778999999999998 78999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.22 Score=58.15 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=93.5
Q ss_pred CCCeEEEEEecCCCCEEEEE---ECC-CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEE-eCCC--cEEEEEcC
Q 002086 594 NDYVTCIQFNPMDDDYFISG---SLD-AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIG-SHKG--SCRLYSIE 666 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sg---s~D-g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasg-s~dg--~I~IwDl~ 666 (969)
...+..-+|+| ++..++-. ... ..+.++|+.+++..........-..-.|+|||+.|+.. ..|| .|+++|+.
T Consensus 192 ~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 192 GSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred CcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 34455567777 55543322 122 45999999998766666666666778999999988764 4556 56677777
Q ss_pred CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc--EEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCE
Q 002086 667 DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR--IRILDGLDI-VHKFRGFRNTSSQISAAFNADGKY 743 (969)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~--I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~ 743 (969)
....... ....+.-+.=.|+|+|...+++.+..|. |++++.... ...+....... ..-.|+|||++
T Consensus 271 ~~~~~~L---------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--~~p~~SpdG~~ 339 (425)
T COG0823 271 GKNLPRL---------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--SNPVWSPDGDK 339 (425)
T ss_pred CCcceec---------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--cCccCCCCCCE
Confidence 7663321 1112222255699999777777777776 444453322 12222221111 15678999999
Q ss_pred EEEEeCC-Cc--EEEEEcCC
Q 002086 744 IISASED-SQ--VYVWKREE 760 (969)
Q Consensus 744 LaSgs~D-g~--I~IWdl~t 760 (969)
|+..+.. |. |.+.++.+
T Consensus 340 i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred EEEEeccCCceeeEEeccCC
Confidence 9877753 44 55555544
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.037 Score=64.81 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=75.2
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEE-EEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVT-AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~-sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
...|.-+.|+| .-.+||.+..+|.|.+..+.-.++..+.-+...++ +++|.|||+.|++|-.||+|++.|+..+....
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 44577889999 88999999999999999988666665554666676 99999999999999999999999999887654
Q ss_pred eeeeeecccccCCCCCeEEEEEcC
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
... ......|.++-|.+
T Consensus 99 ~~~-------~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFL-------FSVETDISKGIWDR 115 (665)
T ss_pred ccc-------cccccchheeeccc
Confidence 421 22345667777764
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.41 E-value=7.7 Score=46.93 Aligned_cols=54 Identities=9% Similarity=-0.017 Sum_probs=36.9
Q ss_pred eEEEEeCCCceEEEEecC---C-------CCEEEEEEccCCC---EEEEEeCCCcEEEEEcCCCcee
Q 002086 618 KVRIWSISDRLVVDWTDL---H-------EMVTAACYTPDGQ---NALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 618 ~I~IWDl~~~~~~~~~~~---~-------~~V~sv~fspdg~---~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
.|.-.|++++++.-.+.. . ....-+.+..+|+ .++.+..+|.+++.|-.+++.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 577778888887643321 1 1122233335676 6778999999999999999875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.38 E-value=3 Score=48.78 Aligned_cols=188 Identities=13% Similarity=0.154 Sum_probs=100.3
Q ss_pred ceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee---cCCCe-----EEEEEecCCCC
Q 002086 537 ETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA---HNDYV-----TCIQFNPMDDD 608 (969)
Q Consensus 537 ~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~---h~~~V-----~sv~fsp~~~~ 608 (969)
..+|...++++..+.-..+.|.++.|..+..|+.-..||.++++|+.... ...++ ....| ..+.+.. +|
T Consensus 63 I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~-~G- 139 (410)
T PF04841_consen 63 IQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK-NG- 139 (410)
T ss_pred EEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC-CC-
Confidence 35666777777765544589999999998888899999999999997333 11111 11122 1222221 23
Q ss_pred EEEEEECCCeEEEEeCCCce-EEE-EecCCC---------CEEE-EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 002086 609 YFISGSLDAKVRIWSISDRL-VVD-WTDLHE---------MVTA-ACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV 676 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~-~~~-~~~~~~---------~V~s-v~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~ 676 (969)
++.-..++.+.+..--... ... ...... .... ..++.+....+....++.+.+.+-...+.
T Consensus 140 -ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------ 212 (410)
T PF04841_consen 140 -IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------ 212 (410)
T ss_pred -EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc------
Confidence 2222334444444322221 111 001000 0111 23444444444444555555443322110
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC--cceEEEEeecCCCCeEEEEEeCCCC
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL--DIVHKFRGFRNTSSQISAAFNADGK 742 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~--~~~~~~~~~~~~~~V~sl~fspdg~ 742 (969)
....+++..+++||++ ++++.-..+|.+.+.... +....+... .......+.|+-+..
T Consensus 213 ------i~~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 ------IDSDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGNDA 272 (410)
T ss_pred ------ccCCCCeEEEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCCc
Confidence 1234689999999998 788888899999888732 222222222 123445667765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.34 E-value=6 Score=49.36 Aligned_cols=159 Identities=16% Similarity=0.230 Sum_probs=97.8
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
+.......+..+...++.|+-... ..|++++-. +....|.. ...++....+.+...+++++.++.+...++....+.
T Consensus 446 gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~ 522 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLR 522 (1096)
T ss_pred cccccCceEEEEccCCceEEEEec-ccEEEEcch-hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeecccee
Confidence 444555555555555666555443 358887765 33333333 344555555556667888887888888888776643
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCC--CCc---eEEEEeCCCcEEEEeCC-cceE----EEEeecCCCCeEEEEEeCCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPS--NPS---EVLVTSADSRIRILDGL-DIVH----KFRGFRNTSSQISAAFNADG 741 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd--~~~---~l~sgs~Dg~I~IwD~~-~~~~----~~~~~~~~~~V~sl~fspdg 741 (969)
...+ ......|.|+.++|- ++. ++++|..+..+.+.-.. +... .+.+..-+..|.-..|-.|.
T Consensus 523 e~~~-------~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~ 595 (1096)
T KOG1897|consen 523 EVSH-------KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI 595 (1096)
T ss_pred eeee-------heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc
Confidence 3221 345678999999975 444 78888777765554322 1111 11222234456666777788
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 002086 742 KYIISASEDSQVYVWKREE 760 (969)
Q Consensus 742 ~~LaSgs~Dg~I~IWdl~t 760 (969)
.||.++..||.++-|-++.
T Consensus 596 ~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred eEEEEEcCCceEEEEEEEc
Confidence 9999999999988776654
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.05 E-value=5 Score=46.73 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=105.2
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-------------------
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD------------------- 626 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~------------------- 626 (969)
.+|+.-+.||.+.+++-+.-.....+...--...+.|.+ ..+.|++++.+..|..|....
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~ 224 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS 224 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Confidence 688899999999999988766555554444445568888 788899999888998887521
Q ss_pred -ceEE---EEecCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEE--EEcCC
Q 002086 627 -RLVV---DWTDLHEMVTAACYTP---DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF--QFSPS 697 (969)
Q Consensus 627 -~~~~---~~~~~~~~V~sv~fsp---dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l--~fspd 697 (969)
++.+ ..+...+.+..+.... ....+++-+ ..++.+.+-. +.+.....+++. ...-.++.+ ...+.
T Consensus 225 ~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G~l~~~krLd~~----p~~~~~Y~~~~~~~~~ 298 (418)
T PF14727_consen 225 SGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-GSLRFQKRLDYN----PSCFCPYRVPWYNEPS 298 (418)
T ss_pred ccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-CeEEEEEecCCc----eeeEEEEEeecccCCC
Confidence 0100 1122233344443332 222333333 3445555543 333322222110 000001111 11122
Q ss_pred CCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 698 NPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
....+++++.++++.||...+..-..........+.-..|..-...|++-+.+|.|.+-=+-+
T Consensus 299 ~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 299 TRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CceEEEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 223599999999999998665544433332333333334444456888888999998877765
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.99 E-value=8.7 Score=43.94 Aligned_cols=173 Identities=21% Similarity=0.288 Sum_probs=85.2
Q ss_pred CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEEC---CCe-EEEEeCC--CceEEEEecC--CCCEEEEEEcc
Q 002086 575 KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSL---DAK-VRIWSIS--DRLVVDWTDL--HEMVTAACYTP 646 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~---Dg~-I~IWDl~--~~~~~~~~~~--~~~V~sv~fsp 646 (969)
..|.--|+.+|+...++.-...+.-+.|+|.+..+|+-|-+ +.. -+||-++ .........+ ...+..=-|.|
T Consensus 168 ~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~ 247 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP 247 (386)
T ss_dssp EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred ceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence 45667789999988888889999999999977777777643 221 2556553 3333333222 24456667889
Q ss_pred CCCEEEEEe-----CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE-eCCC-----------
Q 002086 647 DGQNALIGS-----HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT-SADS----------- 709 (969)
Q Consensus 647 dg~~Lasgs-----~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg-s~Dg----------- 709 (969)
||..|.--+ .+..|.-+|+.+++....... .....+..++++ .|++| +.|.
T Consensus 248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~----------p~~~H~~ss~Dg--~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 248 DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM----------PWCSHFMSSPDG--KLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----------SEEEEEE-TTS--SEEEEEE--------------
T ss_pred CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC----------CceeeeEEcCCC--CEEEecCCCCCccccccccce
Confidence 998766422 233566677777654322211 124455566776 34444 3332
Q ss_pred -----cEEEEeCCcceE-EEEeec-------C--CCCeEEEEEeCCCCEEE-EEeCCCcEEEEEcC
Q 002086 710 -----RIRILDGLDIVH-KFRGFR-------N--TSSQISAAFNADGKYII-SASEDSQVYVWKRE 759 (969)
Q Consensus 710 -----~I~IwD~~~~~~-~~~~~~-------~--~~~V~sl~fspdg~~La-Sgs~Dg~I~IWdl~ 759 (969)
-|++++...... .+..|. + ...=-...|+|||++|+ ++...|...||=++
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 355666543222 121111 0 01123579999998866 55567877777554
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=2.2 Score=52.09 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=104.2
Q ss_pred EEEEecCCcEEEEEeCC------CcEEEEECCCCcEEEEeecC--CCeEEEEEecCCCCEEEEEECCCe-----EEEEeC
Q 002086 558 LDLSWSRSHLLLSSSMD------KTVRLWDMETKSCLKLFAHN--DYVTCIQFNPMDDDYFISGSLDAK-----VRIWSI 624 (969)
Q Consensus 558 ~~l~fs~~~~L~Sgs~D------gtV~IWDl~t~~~i~~~~h~--~~V~sv~fsp~~~~~L~sgs~Dg~-----I~IWDl 624 (969)
.+++...+...++|+.| .++..||..+.+-...-.-. ..-.+++.. ++...++|+.||. |-.||.
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecC
Confidence 45666667888999988 46788888887744422211 111222222 6888899999865 777887
Q ss_pred CCceEEEEecCCCCEEEE-EEccCCCEEEEEeCCC------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 625 SDRLVVDWTDLHEMVTAA-CYTPDGQNALIGSHKG------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 625 ~~~~~~~~~~~~~~V~sv-~fspdg~~Lasgs~dg------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
.+.+-...-......... ...-+|...++|+.++ .+..||..++.......+.. .... ..++.-
T Consensus 404 ~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~--~R~~-----~g~a~~-- 474 (571)
T KOG4441|consen 404 VTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT--RRSG-----FGVAVL-- 474 (571)
T ss_pred CCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc--cccc-----ceEEEE--
Confidence 776533222222222222 2223677778887554 57789988887654433211 1111 113332
Q ss_pred CCceEEEEeCCCc-----EEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCCc-----EEEEEcCC
Q 002086 698 NPSEVLVTSADSR-----IRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDSQ-----VYVWKREE 760 (969)
Q Consensus 698 ~~~~l~sgs~Dg~-----I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~-----I~IWdl~t 760 (969)
+...+++|+.|+. |..||.....-.... ......-..++ .-+++..+.|+.||. |..||-.+
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEecccCccccceeEEcCCCC
Confidence 2268888887763 666775432222211 11111111121 236777888888764 66666555
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=3.5 Score=44.95 Aligned_cols=167 Identities=10% Similarity=0.206 Sum_probs=112.8
Q ss_pred ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee--cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc
Q 002086 551 IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA--HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 551 ~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~--h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~ 627 (969)
.|-...|.++.|+| .+.|++......-.||=..+|+.+.++. .-...-.|.+.. ++.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 34455699999999 6778888888888888888899998873 234456677775 5666666667888888877554
Q ss_pred e-EE---------EEecC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee--cccccCCCCCeEEEEE
Q 002086 628 L-VV---------DWTDL-HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF--QTKKKSSTRKITGFQF 694 (969)
Q Consensus 628 ~-~~---------~~~~~-~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~--~~~~~~h~~~It~l~f 694 (969)
. ++ ....+ +...-.++|.|....|+++=+..-+.||.+............. .....-.-..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 2 11 11122 4557789999999999999999888888776433111100000 0000122356788999
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCc
Q 002086 695 SPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 695 spd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
++..+.+++.+.+++.+.-.|...
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCC
Confidence 987777888888888888887543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.063 Score=55.88 Aligned_cols=143 Identities=16% Similarity=0.110 Sum_probs=72.9
Q ss_pred EEEEEECCCeEEEEeCCCceEEEEecCCCCEEE-EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 609 YFISGSLDAKVRIWSISDRLVVDWTDLHEMVTA-ACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~s-v~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
.+...+.||.|+-++++..+...... ..+.+ .....-+..+++|+.+|.|++|.........- .......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse--~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d-------~~~s~~e 102 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSE--RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD-------RVCSGEE 102 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhh--hhhhcceeecccCceEEeecccceEEEecCCccchHHH-------hhhcccc
Confidence 34555678888888876543221110 00111 11122356899999999999998762211100 0011122
Q ss_pred CeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-EeecCCCCeEEEEEeCCCCEEEEE--eCCCcEEEEEcCC
Q 002086 688 KITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-RGFRNTSSQISAAFNADGKYIISA--SEDSQVYVWKREE 760 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-~~~~~~~~V~sl~fspdg~~LaSg--s~Dg~I~IWdl~t 760 (969)
.|.+..-.-+...+..+++.|+.||.|+.......- .++....++..+..+..+++|+.+ |.|..++.|++..
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 233322222222588999999999999965433222 222221333333444444455555 5555555555543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.31 E-value=7.5 Score=43.49 Aligned_cols=186 Identities=16% Similarity=0.111 Sum_probs=105.0
Q ss_pred EecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE-EEEecC--
Q 002086 561 SWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV-VDWTDL-- 635 (969)
Q Consensus 561 ~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~-~~~~~~-- 635 (969)
.|.+ +.++.+--..+.|.-|+..+++.. .+.+...+.++.... .+..|+++. .-+.+++...+.. ..+...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 3555 234555566788888888766543 344444455555543 455555553 3366777765554 222211
Q ss_pred ---CCCEEEEEEccCCCEEEEEeC-----------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 636 ---HEMVTAACYTPDGQNALIGSH-----------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 636 ---~~~V~sv~fspdg~~Lasgs~-----------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
....+.+...|+|.+.+.... -|.++.+|. .+...... ..+...-+.|+|+|++..+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~--------~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL--------DDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee--------cCcEEecCceEECCCCCEE
Confidence 134667888999887765433 133444443 23222111 2234456789999999655
Q ss_pred EEEEeCCCcEEEEeCCc-------ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEcC
Q 002086 702 VLVTSADSRIRILDGLD-------IVHKFRGFRNTSSQISAAFNADGKYIISASEDS-QVYVWKRE 759 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~-------~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg-~I~IWdl~ 759 (969)
+++=+..+.|.-|+... ....+......+..-.++...+|.+-+++-.+| .|.+|+-+
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 66657778888887431 111111112234445677778888776555554 88888877
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.29 E-value=2.9 Score=45.50 Aligned_cols=181 Identities=11% Similarity=0.202 Sum_probs=114.4
Q ss_pred EEEEECCCCcEEE---EeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--CCEEEEEEccCCCEE
Q 002086 577 VRLWDMETKSCLK---LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--EMVTAACYTPDGQNA 651 (969)
Q Consensus 577 V~IWDl~t~~~i~---~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--~~V~sv~fspdg~~L 651 (969)
.-+|...-...+. ..+-...|.++.|+| +.+.|++......-.||=...|+++...... ...-.|.|..+|+++
T Consensus 65 ~~~~l~~y~~~i~akpi~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fv 143 (316)
T COG3204 65 IARYLLEYRARIDAKPILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFV 143 (316)
T ss_pred hhhccCCceEEEeccccccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEE
Confidence 4555544333222 124556699999999 7777777777777777766777777665544 345678888888888
Q ss_pred EEEeCCCcEEEEEcCCCceee-ee--eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee--
Q 002086 652 LIGSHKGSCRLYSIEDSKLHQ-LN--QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF-- 726 (969)
Q Consensus 652 asgs~dg~I~IwDl~~~~~~~-~~--~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~-- 726 (969)
++--.+..+.++.+....... .. .+.+....+ .....-+++|.|.+ ..|+++-+-.-+.||........+..+
T Consensus 144 i~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k-~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~ 221 (316)
T COG3204 144 IVDERDRALYLFTVDADTTVISAKVQKIPLGTTNK-KNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHAS 221 (316)
T ss_pred EEehhcceEEEEEEcCCccEEeccceEEeccccCC-CCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccc
Confidence 888889999998887663221 11 222222211 26678899999988 677777777766666533211111111
Q ss_pred ---cC-----CCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCC
Q 002086 727 ---RN-----TSSQISAAFNA-DGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 727 ---~~-----~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t 760 (969)
.. -..+.++.|.+ .+.+|+-+.+++.|.-.|+..
T Consensus 222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 00 12355677876 566777777888887777764
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=93.98 E-value=10 Score=47.77 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=74.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCe---------EEEEEec---------------CCCCEEEEEECCCeEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYV---------TCIQFNP---------------MDDDYFISGSLDAKVR 620 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V---------~sv~fsp---------------~~~~~L~sgs~Dg~I~ 620 (969)
++.|+.++.++.|.-.|..+|+.+-.+.....+ ..+.+.. .++..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 688888899999999999999988777433221 2233321 1345888899999999
Q ss_pred EEeCCCceEEEEecCCCCEE-------------EEEEcc--CCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 002086 621 IWSISDRLVVDWTDLHEMVT-------------AACYTP--DGQNALIGSH----------KGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 621 IWDl~~~~~~~~~~~~~~V~-------------sv~fsp--dg~~Lasgs~----------dg~I~IwDl~~~~~~~~~ 674 (969)
-.|.++++.+..+.....|. .+.-.| .+..+++|+. +|.|+-||..++++.-..
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99999998886554433221 111112 2346666643 688999999999986544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.98 E-value=2.9 Score=49.19 Aligned_cols=132 Identities=12% Similarity=0.219 Sum_probs=70.7
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc------------eEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR------------LVVDW 632 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~------------~~~~~ 632 (969)
|.+|+..+.+ .|.+||+.+++.+..+.... |..|.|++ ++.+++..+.+ .+.|++.... .....
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 5666666554 89999999999999997665 99999999 88888888755 6888876555 33334
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEE
Q 002086 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIR 712 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~ 712 (969)
......|.+.+|..+ .|+-.+.. .++. +-.+....... -..++.-+.+.+.. ..+.....|+.|.
T Consensus 193 ~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~---------ld~~~yllgy~~~~-~~ly~~Dr~~~v~ 257 (443)
T PF04053_consen 193 HEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAH---------LDKPLYLLGYLPKE-NRLYLIDRDGNVI 257 (443)
T ss_dssp EEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE----------SS--EEEEEETTT-TEEEEE-TT--EE
T ss_pred EEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEE---------cCCceEEEEEEccC-CEEEEEECCCCEE
Confidence 443667888888765 44444433 5554 33443322211 12344555555533 4555555666665
Q ss_pred EEe
Q 002086 713 ILD 715 (969)
Q Consensus 713 IwD 715 (969)
.+.
T Consensus 258 ~~~ 260 (443)
T PF04053_consen 258 SYE 260 (443)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=1.8 Score=52.85 Aligned_cols=161 Identities=10% Similarity=0.081 Sum_probs=85.7
Q ss_pred cCCCeEEEEEecCCCCEEEEEE------CCC--eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC-CcEEEE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGS------LDA--KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK-GSCRLY 663 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs------~Dg--~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d-g~I~Iw 663 (969)
....+...+++| +++.++..- .|. .|.+++... ....+... ...+.-.|+|+|..|++.... ..+++.
T Consensus 348 ~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecC-CCCCCceECCCCCceEEEecCcceEEEe
Confidence 334678899999 888776655 243 466666533 22333332 237889999999888876543 223333
Q ss_pred EcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE---EeCCcceEEE----Ee-ecCCCCeEEE
Q 002086 664 SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI---LDGLDIVHKF----RG-FRNTSSQISA 735 (969)
Q Consensus 664 Dl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I---wD~~~~~~~~----~~-~~~~~~V~sl 735 (969)
+-..........+.-..........|..+.|+|||. .++... ++.|++ -........+ .. ......+.++
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGV-RAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCC-EEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 222111111111110000012345799999999995 444433 467777 3322222112 11 1122235788
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 736 AFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 736 ~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.|..++.++ .+..++...+|.+.
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEe
Confidence 999998855 55555555555543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.4 Score=53.56 Aligned_cols=187 Identities=12% Similarity=0.094 Sum_probs=95.5
Q ss_pred cCCcEEEEEeCC------CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCC-----eEEEEeCCCceE
Q 002086 563 SRSHLLLSSSMD------KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDA-----KVRIWSISDRLV 629 (969)
Q Consensus 563 s~~~~L~Sgs~D------gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg-----~I~IWDl~~~~~ 629 (969)
..+..++.|+.+ ..+..||..+..-...- .....-.+++.. ++...+.||.++ .+..||..+..-
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 345677777753 34778888877543221 111111123332 577778888764 488899887653
Q ss_pred EEEecCCCCEE-EEEEccCCCEEEEEeCCC-----------------------cEEEEEcCCCceeeeeeeeecccccCC
Q 002086 630 VDWTDLHEMVT-AACYTPDGQNALIGSHKG-----------------------SCRLYSIEDSKLHQLNQVDFQTKKKSS 685 (969)
Q Consensus 630 ~~~~~~~~~V~-sv~fspdg~~Lasgs~dg-----------------------~I~IwDl~~~~~~~~~~~~~~~~~~~h 685 (969)
........+.. ..+..-+|...++|+.++ .+..||..+.+......+.. .
T Consensus 380 ~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~------~ 453 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT------G 453 (557)
T ss_pred EECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc------c
Confidence 33222221111 111122677777777543 47778887776543322110 0
Q ss_pred CCCeEEEEEcCCCCceEEEEeCC------CcEEEEeCCc-ce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCC--cEEE
Q 002086 686 TRKITGFQFSPSNPSEVLVTSAD------SRIRILDGLD-IV-HKFRGFRNTSSQISAAFNADGKYIISASEDS--QVYV 755 (969)
Q Consensus 686 ~~~It~l~fspd~~~~l~sgs~D------g~I~IwD~~~-~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg--~I~I 755 (969)
... .+++.. ++ ..+++|+.+ ..+..||..+ .. ..............++ .-+|++.++|+.|| .+..
T Consensus 454 r~~-~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~-~~~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 454 TIR-PGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI-LHDNTIMMLHCYESYMLQDT 529 (557)
T ss_pred ccc-CcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE-EECCEEEEEeeecceeehhh
Confidence 111 112222 23 566777654 2367788654 21 1111111111111222 22788999999888 6778
Q ss_pred EEcCCC
Q 002086 756 WKREEH 761 (969)
Q Consensus 756 Wdl~t~ 761 (969)
||..+.
T Consensus 530 yd~~~~ 535 (557)
T PHA02713 530 FNVYTY 535 (557)
T ss_pred cCcccc
Confidence 888773
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=3.2 Score=50.77 Aligned_cols=184 Identities=10% Similarity=0.081 Sum_probs=96.8
Q ss_pred CCEEEEEecC-CcEEEEEe------CCC--cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC---------
Q 002086 555 DDVLDLSWSR-SHLLLSSS------MDK--TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD--------- 616 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs------~Dg--tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D--------- 616 (969)
..+...++++ ++.++... .|. .|.+++... ...... .....+.-.|+| ++..|.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt-~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVL-EGHSLTRPSWSL-DADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeee-cCCCCCCceECC-CCCceEEEecCcceEEEecc
Confidence 4567888888 55554443 243 455556532 222222 223477789999 77766665422
Q ss_pred ---CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEE---EEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 617 ---AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL---YSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 617 ---g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~I---wDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
+.+.+.++..+.... .....|..+.|+|||..++... +|.|++ -....+.........+ .......+.
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l---~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV---GPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe---ecccCCccc
Confidence 234444554444332 3356799999999999988766 477777 4444443211111001 122233467
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEe--CCcceEEE-EeecCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILD--GLDIVHKF-RGFRNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD--~~~~~~~~-~~~~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
.+.|..++ . |+++..++...+|. +....... ........+..++-+++ .|+....+|
T Consensus 501 ~l~W~~~~-~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 501 SLDWRTGD-S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cceEecCC-E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 88999987 4 45555555444554 22222111 12112344555655542 344445555
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.70 E-value=2.1 Score=48.97 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=59.3
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC-----------------
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH----------------- 636 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~----------------- 636 (969)
.+.+.|+|+.+++..........+....|+| +++.++... ++.|.++++.++....+....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 4678999999988877765578899999999 899888875 578999999887655443322
Q ss_pred -CCEEEEEEccCCCEEEEEeC
Q 002086 637 -EMVTAACYTPDGQNALIGSH 656 (969)
Q Consensus 637 -~~V~sv~fspdg~~Lasgs~ 656 (969)
+.-..+-|+|||++|+....
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEE
T ss_pred cccccceEECCCCCEEEEEEE
Confidence 12356889999999987543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=93.70 E-value=2.7 Score=45.85 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=92.1
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee-eec-----
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV-DFQ----- 679 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~-~~~----- 679 (969)
.++.|+.|..+| |+++++..............|..+...++-+.+++-+ |+.+++|++........... ...
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 578899999988 9999994332222223333499999999877777665 59999999987655432110 000
Q ss_pred ccccCCCCCeEEEE-EcCCCCceEEEEeCCCcEEEEeCCc---ce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 680 TKKKSSTRKITGFQ-FSPSNPSEVLVTSADSRIRILDGLD---IV-HKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 680 ~~~~~h~~~It~l~-fspd~~~~l~sgs~Dg~I~IwD~~~---~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
.........+..++ -........++......|.+|.... .. ..++...-...+..++|. +..|+.|..+ ...
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~ 160 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFY 160 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceE
Confidence 00122333455544 1222224455555555888876332 22 345556666778899998 5677777754 478
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
+.|+.++
T Consensus 161 ~idl~~~ 167 (275)
T PF00780_consen 161 LIDLNTG 167 (275)
T ss_pred EEecCCC
Confidence 8888863
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.56 E-value=16 Score=41.22 Aligned_cols=146 Identities=11% Similarity=0.058 Sum_probs=87.5
Q ss_pred CcEEEEEeCCCcEEEEECC-CCcEEEEe-----ecCCCe-EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE--ec-
Q 002086 565 SHLLLSSSMDKTVRLWDME-TKSCLKLF-----AHNDYV-TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW--TD- 634 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~-t~~~i~~~-----~h~~~V-~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~--~~- 634 (969)
+..|.+-|.||.+.-..+. .|+..... ....++ ..-++.. .+..++-.+.+|.|+-.|+........ ..
T Consensus 147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 4668888899998888887 45544221 111222 2333444 456666688999999999987653211 10
Q ss_pred C------C----CCEEEEEEccCCCEEEEEeCC---C-------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE
Q 002086 635 L------H----EMVTAACYTPDGQNALIGSHK---G-------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF 694 (969)
Q Consensus 635 ~------~----~~V~sv~fspdg~~Lasgs~d---g-------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f 694 (969)
. . +...-+++++..+.|.+--.. | .|.+||+.+.+.+....+ ..++.+|+.
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---------~~~~~Si~V 296 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---------EHPIDSIAV 296 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---------EEEESEEEE
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---------CCccceEEE
Confidence 0 0 123457788766655553322 1 577888888887654432 123668999
Q ss_pred cCCCCceEEEE-eCCCcEEEEeCCcce
Q 002086 695 SPSNPSEVLVT-SADSRIRILDGLDIV 720 (969)
Q Consensus 695 spd~~~~l~sg-s~Dg~I~IwD~~~~~ 720 (969)
+.+...+|++. ..++.|.+||..+..
T Consensus 297 sqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 297 SQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp ESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred ccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 98876666655 467999999976543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.44 E-value=1.4 Score=55.04 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=72.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEE--EEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec-CCC---C
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCL--KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD-LHE---M 638 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i--~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~-~~~---~ 638 (969)
+..++.|+..|.|...|+...-+. .-....++|++++|+. ++..++.|-.+|.|.+||+..+++.+.+. +.. .
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 467888999999999998765321 1114568999999998 99999999999999999999987665443 333 3
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 002086 639 VTAACYTPDGQNALIGSHKGSCRLYSIE 666 (969)
Q Consensus 639 V~sv~fspdg~~Lasgs~dg~I~IwDl~ 666 (969)
|..+.+..++..++++...|. +|.+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 444555556667888887776 55543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=93.37 E-value=8.6 Score=44.46 Aligned_cols=192 Identities=13% Similarity=0.079 Sum_probs=92.6
Q ss_pred cEEEEEe-CCCcEEEEECCC----CcEEEEee----cC----CCeEEEEEecCCCCEEEEEEC--C----CeEEEEeCCC
Q 002086 566 HLLLSSS-MDKTVRLWDMET----KSCLKLFA----HN----DYVTCIQFNPMDDDYFISGSL--D----AKVRIWSISD 626 (969)
Q Consensus 566 ~~L~Sgs-~DgtV~IWDl~t----~~~i~~~~----h~----~~V~sv~fsp~~~~~L~sgs~--D----g~I~IWDl~~ 626 (969)
++|+..+ ..+.|+|.|+.+ .+..+++. +. .....+...| +++.++++-. + |-+.++|-.+
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 5666665 788999999984 34455542 11 1223344455 7888887532 2 4588888887
Q ss_pred ceEEEEecCC----CCEEEEEEccCCCEEEEEeC--------------------CCcEEEEEcCCCceeeeeeeeecccc
Q 002086 627 RLVVDWTDLH----EMVTAACYTPDGQNALIGSH--------------------KGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 627 ~~~~~~~~~~----~~V~sv~fspdg~~Lasgs~--------------------dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
-++....... ..-+.+-|.|..+.+++..- ..++.+||+...+..+...+.
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg----- 241 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG----- 241 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES------
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC-----
Confidence 6666543332 23466777887777777532 357999999999987765431
Q ss_pred cCCCCCeEEEEEc--CCCCceEEEEeCCCcEEEEeC-Cc--c--eEEEEe-------e---cC-------CCCeEEEEEe
Q 002086 683 KSSTRKITGFQFS--PSNPSEVLVTSADSRIRILDG-LD--I--VHKFRG-------F---RN-------TSSQISAAFN 738 (969)
Q Consensus 683 ~~h~~~It~l~fs--pd~~~~l~sgs~Dg~I~IwD~-~~--~--~~~~~~-------~---~~-------~~~V~sl~fs 738 (969)
....-...|.|. |....-++.+...++|..|-. .+ . ...... . .- ..-|+.+.+|
T Consensus 242 -~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 242 -EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred -CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 112234455554 444344555555666666532 11 1 111111 0 00 2457899999
Q ss_pred CCCCEEEEEeC-CCcEEEEEcCCCCcc
Q 002086 739 ADGKYIISASE-DSQVYVWKREEHRNA 764 (969)
Q Consensus 739 pdg~~LaSgs~-Dg~I~IWdl~t~~~~ 764 (969)
.|.++|..++. +|.|+.||+..+..+
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 99999987765 899999999986443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.95 Score=52.45 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=94.1
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCC-------CEEEEEECCCeEEEEeCCCce--EEEEec--
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDD-------DYFISGSLDAKVRIWSISDRL--VVDWTD-- 634 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~-------~~L~sgs~Dg~I~IWDl~~~~--~~~~~~-- 634 (969)
-+|.++..-..|+-.|++.|+.+..+.....|.-+.+.| +. ..-+.|-.|..|.-||.+-.. .+.+..
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 345566666789999999999999997777788888887 32 233556778889999987432 222221
Q ss_pred ---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcE
Q 002086 635 ---LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRI 711 (969)
Q Consensus 635 ---~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I 711 (969)
......|.+-..+| +|++|+.+|.|++||--.... .....+-..+|..+..+.+| .+|+++ .+..+
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~A--------KTAlPgLG~~I~hVdvtadG-Kwil~T-c~tyL 494 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRA--------KTALPGLGDAIKHVDVTADG-KWILAT-CKTYL 494 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhh--------hhcccccCCceeeEEeeccC-cEEEEe-cccEE
Confidence 22345566666555 899999999999999733221 22236678899999999988 455444 45555
Q ss_pred EEEe
Q 002086 712 RILD 715 (969)
Q Consensus 712 ~IwD 715 (969)
.+.+
T Consensus 495 lLi~ 498 (644)
T KOG2395|consen 495 LLID 498 (644)
T ss_pred EEEE
Confidence 5554
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.11 E-value=4 Score=48.32 Aligned_cols=151 Identities=12% Similarity=0.175 Sum_probs=94.8
Q ss_pred CCCEEEEEecCCcE-EEEEe--CCCcEEEEECCCCcEEEEeecCCCeEEEEEecC---CCCEEEEEECCCeEEEEeCCC-
Q 002086 554 LDDVLDLSWSRSHL-LLSSS--MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM---DDDYFISGSLDAKVRIWSISD- 626 (969)
Q Consensus 554 ~~~I~~l~fs~~~~-L~Sgs--~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~---~~~~L~sgs~Dg~I~IWDl~~- 626 (969)
-.+|..++|..|+. ++|.- ..|.+++=|- .+++.-..|..+.|.|. +-..+++......|.||.+.-
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 35788999998544 44432 2333332221 23455567889999983 123566677788999999842
Q ss_pred ----ceEEE--EecC--CCC--EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 627 ----RLVVD--WTDL--HEM--VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 627 ----~~~~~--~~~~--~~~--V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.+.+. .-.. .-+ ...+.|+|....|++-.....-.++++.......... ....+.|.|.+|.+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD-------i~~~G~IhCACWT~ 165 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD-------IKTSGLIHCACWTK 165 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe-------ccCCceEEEEEecC
Confidence 22221 1111 111 2457899998888887776666677766443221111 24567899999999
Q ss_pred CCCceEEEEeCCCcEEEEeCC
Q 002086 697 SNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~ 717 (969)
||.+++++.+..=.-+|||..
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCc
Confidence 997666666777778999943
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.68 Score=57.93 Aligned_cols=123 Identities=12% Similarity=0.164 Sum_probs=83.8
Q ss_pred CEEEEEEccCCCEEEEE--eCCCcEEEEEcCCCceeeeee-eeecc--cccCCCCCeEEEEEcCCCCceEEEEeCCCcEE
Q 002086 638 MVTAACYTPDGQNALIG--SHKGSCRLYSIEDSKLHQLNQ-VDFQT--KKKSSTRKITGFQFSPSNPSEVLVTSADSRIR 712 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasg--s~dg~I~IwDl~~~~~~~~~~-~~~~~--~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~ 712 (969)
.+..+...+|+...++. +.+-.|..||++......... ..+.. ..........++.|.|.-+...++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45566666777665543 344488999998654322111 11111 11223445677889998777888899999999
Q ss_pred EEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 713 ILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 713 IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+..+...............+++++|+|.|+.++.|-..|++.-|...-
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 988665444444444566789999999999999999999999987653
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=92.77 E-value=12 Score=45.17 Aligned_cols=196 Identities=16% Similarity=0.114 Sum_probs=110.4
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCC--eE----------EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY--VT----------CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~--V~----------sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
+..|+.++.++.|.-.|..+|+.+-.+..... +. .+++ .+..++.++.|+.|.-+|..+++++-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 67888888899999999999998877643211 11 1223 245777888999999999999988754
Q ss_pred ecCCCC--EEEEEEcc--CCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeecccc------------c-------
Q 002086 633 TDLHEM--VTAACYTP--DGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQTKK------------K------- 683 (969)
Q Consensus 633 ~~~~~~--V~sv~fsp--dg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~~~------------~------- 683 (969)
...... -..+.-+| .+..++++.. +|.|.-+|..+++.+-.......... .
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 432211 00111112 1235555543 68999999999987644322111000 0
Q ss_pred ----CCCCCe-EEEEEcCCCCceEEEEeCC-----C-----------cEEEEeCCcceEEEE--eecCC-------CCeE
Q 002086 684 ----SSTRKI-TGFQFSPSNPSEVLVTSAD-----S-----------RIRILDGLDIVHKFR--GFRNT-------SSQI 733 (969)
Q Consensus 684 ----~h~~~I-t~l~fspd~~~~l~sgs~D-----g-----------~I~IwD~~~~~~~~~--~~~~~-------~~V~ 733 (969)
.....+ ..+.+.|.. .+++.+..+ + .|.-.|..+...+.. ...|. ....
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 001111 123566644 355555422 2 233444443333322 22221 1111
Q ss_pred EEEEeCCCC---EEEEEeCCCcEEEEEcCCCCcc
Q 002086 734 SAAFNADGK---YIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 734 sl~fspdg~---~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
-+.+..+|+ .|+.+..+|.+++.|..+++.+
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 223335776 7889999999999999996543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.77 E-value=17 Score=39.49 Aligned_cols=184 Identities=11% Similarity=0.033 Sum_probs=106.0
Q ss_pred CEEEEEe-cCCcEEEEEeCCC--cEEEEECCCCcEEEEee--cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 556 DVLDLSW-SRSHLLLSSSMDK--TVRLWDMETKSCLKLFA--HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 556 ~I~~l~f-s~~~~L~Sgs~Dg--tV~IWDl~t~~~i~~~~--h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
-...+.| ..+.++-+.+.-| .|+.+|+.+++.+.... ....--.|+.. ++..+.-.-.++...+||..+-+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 3457888 4467777777766 79999999999886653 23333445554 3444555566799999999998877
Q ss_pred EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc
Q 002086 631 DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR 710 (969)
Q Consensus 631 ~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~ 710 (969)
..+.....=..++ .+++.|+.......++++|..+.+......+... ......++.+.|.. | ..++-.-....
T Consensus 124 ~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~---g~pv~~LNELE~i~-G-~IyANVW~td~ 196 (264)
T PF05096_consen 124 GTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN---GRPVSNLNELEYIN-G-KIYANVWQTDR 196 (264)
T ss_dssp EEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET---TEE---EEEEEEET-T-EEEEEETTSSE
T ss_pred EEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEEC---CEECCCcEeEEEEc-C-EEEEEeCCCCe
Confidence 7766666666666 5678888888888999999988776655444321 12233455566652 2 33333344444
Q ss_pred EEEEeCCcceE--EEEe-------------ecCCCCeEEEEEeCCCCEEEEEe
Q 002086 711 IRILDGLDIVH--KFRG-------------FRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 711 I~IwD~~~~~~--~~~~-------------~~~~~~V~sl~fspdg~~LaSgs 748 (969)
|...|..+..- .+.. .....-.+.+++.|....|...+
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 55555433221 1110 01134467899998665544443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.57 E-value=9.1 Score=44.25 Aligned_cols=183 Identities=17% Similarity=0.193 Sum_probs=88.7
Q ss_pred CcEEEEEe------CCCcEEEEECCCCcEEEEeec----CCCeEEEEEecCCCCEEEEEEC-------------------
Q 002086 565 SHLLLSSS------MDKTVRLWDMETKSCLKLFAH----NDYVTCIQFNPMDDDYFISGSL------------------- 615 (969)
Q Consensus 565 ~~~L~Sgs------~DgtV~IWDl~t~~~i~~~~h----~~~V~sv~fsp~~~~~L~sgs~------------------- 615 (969)
+++++++- .-|-+.+.|-++.+....... ...-+.+-|.| ..+.+++...
T Consensus 141 G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~ 219 (461)
T PF05694_consen 141 GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGK 219 (461)
T ss_dssp --EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-
T ss_pred ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhccc
Confidence 55666642 234677888888777766632 33456777888 7788887643
Q ss_pred -CCeEEEEeCCCceEEEEecCC---CCEEEEEEccC--CCEEEEEe-CCCcEE-EEEcCCCceeeeeeeeecccc-----
Q 002086 616 -DAKVRIWSISDRLVVDWTDLH---EMVTAACYTPD--GQNALIGS-HKGSCR-LYSIEDSKLHQLNQVDFQTKK----- 682 (969)
Q Consensus 616 -Dg~I~IWDl~~~~~~~~~~~~---~~V~sv~fspd--g~~Lasgs-~dg~I~-IwDl~~~~~~~~~~~~~~~~~----- 682 (969)
..++.+||+.+.++++.+... ..+..|.|..+ ..+-++|+ -..+|. +|....++......+.+..+.
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 467999999999999888776 34667777654 44444433 334444 444455554443333332221
Q ss_pred --------cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---eEEEEeec----------------CCCCeEEE
Q 002086 683 --------KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---VHKFRGFR----------------NTSSQISA 735 (969)
Q Consensus 683 --------~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~~----------------~~~~V~sl 735 (969)
..-..-|+.|..|.|+..+.+++-.+|.|+.||+... ....+.+. -.+...-+
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 1113558999999998555666678999999997642 22221111 01122457
Q ss_pred EEeCCCCEEEEEe
Q 002086 736 AFNADGKYIISAS 748 (969)
Q Consensus 736 ~fspdg~~LaSgs 748 (969)
..|.||+.|...+
T Consensus 380 qlS~DGkRlYvTn 392 (461)
T PF05694_consen 380 QLSLDGKRLYVTN 392 (461)
T ss_dssp EE-TTSSEEEEE-
T ss_pred EEccCCeEEEEEe
Confidence 7888888877654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.54 E-value=16 Score=40.74 Aligned_cols=156 Identities=14% Similarity=0.179 Sum_probs=77.6
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-Cc
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED-SK 669 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~~ 669 (969)
.-.+.+..+..++ ++.+++++.......-||--... ..........|..|.|.|++.+.+++ ..|.|++=+... ..
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 4456788888887 88888777665556678765432 22333345789999999998776655 788888877221 11
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE-eCCc-ceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL-DGLD-IVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw-D~~~-~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
..... ..........+..++|.+++ .+.+++..|.+.+= |..+ ....-....-......+.|..+.+-+|.
T Consensus 220 ~w~~~----~~~~~~~~~~~ld~a~~~~~--~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l- 292 (302)
T PF14870_consen 220 TWSEP----IIPIKTNGYGILDLAYRPPN--EIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL- 292 (302)
T ss_dssp EE-------B-TTSS--S-EEEEEESSSS---EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred ccccc----cCCcccCceeeEEEEecCCC--CEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-
Confidence 11110 01112344568999999875 44455556655443 3222 2221112233455778888766555554
Q ss_pred eCCCcEEEE
Q 002086 748 SEDSQVYVW 756 (969)
Q Consensus 748 s~Dg~I~IW 756 (969)
+.+|.|.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 458887665
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=92.28 E-value=27 Score=40.68 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=29.2
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEec
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNP 604 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp 604 (969)
..++.|..+|.|++|.-...-.....-|..+|..|.+..
T Consensus 80 ~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 80 TCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred EEEEEEecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 578999999999999984433333446888888888754
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.24 E-value=3.6 Score=50.19 Aligned_cols=184 Identities=14% Similarity=0.175 Sum_probs=102.0
Q ss_pred CcEEEEEeCC------CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC------CeEEEEeCCCceEE
Q 002086 565 SHLLLSSSMD------KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD------AKVRIWSISDRLVV 630 (969)
Q Consensus 565 ~~~L~Sgs~D------gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D------g~I~IWDl~~~~~~ 630 (969)
+.+++.|+.+ ..|..+|..++...... .....-.++++. ++..+++|+.| .++..||...++=.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 5666777766 46888998888554433 344445666666 47888899998 35788888877633
Q ss_pred EEecCCCCEEEE-EEccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 631 DWTDLHEMVTAA-CYTPDGQNALIGSHKG-----SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 631 ~~~~~~~~V~sv-~fspdg~~Lasgs~dg-----~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
........-... .-.-+|...++|+.|| +|..||..+.+...... ......+.....-++..+++
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---------m~~~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---------MLTRRSGHGVAVLGGKLYII 433 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC---------CCcceeeeEEEEECCEEEEE
Confidence 222111111111 1122677888999887 47778888776543321 11123333333333367778
Q ss_pred EeCCCc------EEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCCc-----EEEEEcCC
Q 002086 705 TSADSR------IRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDSQ-----VYVWKREE 760 (969)
Q Consensus 705 gs~Dg~------I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~-----I~IWdl~t 760 (969)
|+.++. +..||..+..-.... ......-..++ .-++.+.+.||.|+. |..||..+
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCC
Confidence 875554 566774432221111 11111111222 236778888887763 66677766
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.52 Score=36.99 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 728 NTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 728 ~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
....|..++|+|...+||.++.||.|.||+++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34568899999999999999999999999994
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.04 E-value=14 Score=39.08 Aligned_cols=186 Identities=10% Similarity=0.108 Sum_probs=98.4
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCC---CEEEEEECCCeEEEEeCCCc--eEEEE-e-----
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDD---DYFISGSLDAKVRIWSISDR--LVVDW-T----- 633 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~---~~L~sgs~Dg~I~IWDl~~~--~~~~~-~----- 633 (969)
+.++..--..|.|.-||+.+.+..+.--...++.++.+ |..+ .+.+.++..-.|--||.... .+... .
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 34555555667788899888665443322222333333 2233 23334444344556764332 22211 1
Q ss_pred cCCCCEEEEEEccCCCEEEEEeC-C---------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 634 DLHEMVTAACYTPDGQNALIGSH-K---------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 634 ~~~~~V~sv~fspdg~~Lasgs~-d---------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
......+.-..+|+|++++ |.. | |.++.|-.... ... ......--..++|+.+...+.+
T Consensus 106 ~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~-v~~---------i~~~v~IsNgl~Wd~d~K~fY~ 174 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQ-VEL---------IWNCVGISNGLAWDSDAKKFYY 174 (310)
T ss_pred HHhcccccCccCCCCceee-eeeccccccccccccEEEEeccCCC-cee---------eehhccCCccccccccCcEEEE
Confidence 1124456677889999844 332 2 33344432211 100 0122233456889887767778
Q ss_pred EEeCCCcEEEEeC-------CcceEEEEeec----CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 704 VTSADSRIRILDG-------LDIVHKFRGFR----NTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 704 sgs~Dg~I~IwD~-------~~~~~~~~~~~----~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+-+.+-.|.-||. .+....+.... ....--.+++..+|.+.+++-..++|...|..+++
T Consensus 175 iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 175 IDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred EccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc
Confidence 8888899988871 12222222111 11111245567788888888888999999998843
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.98 E-value=8.3 Score=41.86 Aligned_cols=199 Identities=9% Similarity=0.076 Sum_probs=105.1
Q ss_pred EEEecC--CcEEEEEeCCCc-EEEEECCCCcEEEEee---cCCCeEEEEEecCCCCEEEEEECC-----CeEEEEeCCCc
Q 002086 559 DLSWSR--SHLLLSSSMDKT-VRLWDMETKSCLKLFA---HNDYVTCIQFNPMDDDYFISGSLD-----AKVRIWSISDR 627 (969)
Q Consensus 559 ~l~fs~--~~~L~Sgs~Dgt-V~IWDl~t~~~i~~~~---h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~ 627 (969)
.+.|+| ..-++.+-.-|+ ..++|....+...++. .....--=.|+| ++.+|++.-.| |.|-|||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 455665 344555555454 4578888777655441 111111226888 89998886554 77999999864
Q ss_pred --eEEEEecCCCCEEEEEEccCCCEEEEEeC------------------CCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 628 --LVVDWTDLHEMVTAACYTPDGQNALIGSH------------------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 628 --~~~~~~~~~~~V~sv~fspdg~~Lasgs~------------------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
.+-.+..+.-....+.+.+||+.++++.. .-.+.+.|..++.++....++ ...+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp----~~l~~l 226 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP----ASLRQL 226 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc----hhhhhc
Confidence 23345556666788999999999887632 112333343344433222211 013445
Q ss_pred CeEEEEEcCCCCceEEEEeCCCc-------EEEEeCCcceEEEEee-----cCCCCeEEEEEeCCCCEEE-EEeCCCcEE
Q 002086 688 KITGFQFSPSNPSEVLVTSADSR-------IRILDGLDIVHKFRGF-----RNTSSQISAAFNADGKYII-SASEDSQVY 754 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~-------I~IwD~~~~~~~~~~~-----~~~~~V~sl~fspdg~~La-Sgs~Dg~I~ 754 (969)
.|..+...+++ ..++.+-..|. |-.+...+....+... .-..+|-+++.+.+..+++ |+=..+...
T Consensus 227 SiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 227 SIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred ceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 56677777766 33332222111 1111111111111100 1123456777776555554 444455688
Q ss_pred EEEcCCCCc
Q 002086 755 VWKREEHRN 763 (969)
Q Consensus 755 IWdl~t~~~ 763 (969)
+||..++..
T Consensus 306 i~da~tG~v 314 (366)
T COG3490 306 IWDAATGAV 314 (366)
T ss_pred EEEcCCCcE
Confidence 999999543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=4.9 Score=48.63 Aligned_cols=183 Identities=11% Similarity=0.131 Sum_probs=89.8
Q ss_pred CCcEEEEEeCCC------cEEEEECCCCcEEEEee---cCCCeEEEEEecCCCCEEEEEECC-----CeEEEEeCCCceE
Q 002086 564 RSHLLLSSSMDK------TVRLWDMETKSCLKLFA---HNDYVTCIQFNPMDDDYFISGSLD-----AKVRIWSISDRLV 629 (969)
Q Consensus 564 ~~~~L~Sgs~Dg------tV~IWDl~t~~~i~~~~---h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~~~ 629 (969)
.+..++.|+.++ .+..||..+.+....-. .......+.+ ++..++.||.+ ..+..||..+++-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 356667776543 57788888776543221 1112222222 56777778765 3477888877653
Q ss_pred EEEecCCCC--EEEEEEccCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 630 VDWTDLHEM--VTAACYTPDGQNALIGSHK------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 630 ~~~~~~~~~--V~sv~fspdg~~Lasgs~d------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
........+ -.+++ .-+++.++.|+.+ ..+..||..+.+.......+ . . .... ++... ++ ..
T Consensus 371 ~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~---~-r~~~-~~~~~-~~-~i 440 (534)
T PHA03098 371 REEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--I---S-HYGG-CAIYH-DG-KI 440 (534)
T ss_pred eeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--c---c-ccCc-eEEEE-CC-EE
Confidence 332221111 11222 2356666777632 35888998876654322111 0 0 1111 12222 23 56
Q ss_pred EEEEeCCC--------cEEEEeCCcceEE-EEeecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCC
Q 002086 702 VLVTSADS--------RIRILDGLDIVHK-FRGFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREE 760 (969)
Q Consensus 702 l~sgs~Dg--------~I~IwD~~~~~~~-~~~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t 760 (969)
++.|+.+. .+.+||..+..-. .........-.+++ .-++++++.|+.+ ..|.+||..+
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 66665432 3788885532211 11111111111121 2267777777764 4677888776
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.49 Score=37.18 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=29.2
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE 484 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~ 484 (969)
...|.+++|+|...+||.|..||.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 346999999999999999999999999998 444
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.41 E-value=2 Score=53.97 Aligned_cols=128 Identities=17% Similarity=0.179 Sum_probs=85.8
Q ss_pred cEEEEEeCCCcEEEEECCCCcEE--------EE----eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-EEEE
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCL--------KL----FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VVDW 632 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i--------~~----~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-~~~~ 632 (969)
..++..+.+-.|..||+.+-..- +. +.......++.|+|.-....+++..|+.|++..+.... .+..
T Consensus 115 s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s 194 (1405)
T KOG3630|consen 115 SVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS 194 (1405)
T ss_pred EEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc
Confidence 34444555667889998753211 11 12344567889998556677888899999998876433 3333
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
......+++++|+|.|+.+++|-..|++.-|...-.........+ ......|.+|+|-...
T Consensus 195 ~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp-----~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 195 FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP-----VEENYRVLSVTWLSTQ 255 (1405)
T ss_pred cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCC-----cCCCcceeEEEEecce
Confidence 456677999999999999999999999999876543221111110 1125789999998754
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=91.40 E-value=33 Score=39.99 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=55.6
Q ss_pred EEecC-CcEEEEEeCCCcEEE---EECCC-----CcEEEEe----ecC--CCeEEEEEecC----------CCCEEEEEE
Q 002086 560 LSWSR-SHLLLSSSMDKTVRL---WDMET-----KSCLKLF----AHN--DYVTCIQFNPM----------DDDYFISGS 614 (969)
Q Consensus 560 l~fs~-~~~L~Sgs~DgtV~I---WDl~t-----~~~i~~~----~h~--~~V~sv~fsp~----------~~~~L~sgs 614 (969)
++.++ +++|+.+..+.-|.+ |+... +...... .+. ..|+++.+-|. +...+++|.
T Consensus 7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ 86 (415)
T PF14655_consen 7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT 86 (415)
T ss_pred EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence 44555 667777766666555 54311 1111111 232 57888887763 346789999
Q ss_pred CCCeEEEEeCCCceEEEEecCCCCEEEEEEcc
Q 002086 615 LDAKVRIWSISDRLVVDWTDLHEMVTAACYTP 646 (969)
Q Consensus 615 ~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fsp 646 (969)
.+|.|++|......++...-|..+|..+.+..
T Consensus 87 ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 87 SSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred cccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 99999999987665655666777777777654
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=91.28 E-value=9.3 Score=44.53 Aligned_cols=151 Identities=16% Similarity=0.163 Sum_probs=91.5
Q ss_pred CCCEEEEEECCCeEEEEeCCCce-----EEEEecCCCCEEEEEEcc----CCCEEEEEeCCCcEEEEEcCCCcee----e
Q 002086 606 DDDYFISGSLDAKVRIWSISDRL-----VVDWTDLHEMVTAACYTP----DGQNALIGSHKGSCRLYSIEDSKLH----Q 672 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~-----~~~~~~~~~~V~sv~fsp----dg~~Lasgs~dg~I~IwDl~~~~~~----~ 672 (969)
+.+.|++|+..|.++||+...+. ++-......+|..+..-. .....++.-.-..+.||.+....-. .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 45799999999999999986542 344455667887776643 2223333356778888887322110 0
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCC----CceEEEEeCCCcEEEEeCCcceE--EEEeecCCCCeEEEEEeCCCCEEEE
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSN----PSEVLVTSADSRIRILDGLDIVH--KFRGFRNTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~----~~~l~sgs~Dg~I~IwD~~~~~~--~~~~~~~~~~V~sl~fspdg~~LaS 746 (969)
...+..... ..-......+++-|-| ..++++-+.||.+.+|+-..... .+..+-.++ -++|.+.-..|++
T Consensus 116 ~~~L~~~ye-h~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPg---Pl~Y~~~tDsfvt 191 (418)
T PF14727_consen 116 QYQLELIYE-HSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPG---PLCYCPRTDSFVT 191 (418)
T ss_pred EEEEEEEEE-EecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCc---CeEEeecCCEEEE
Confidence 011111110 1112223333333322 36788889999999999655432 222333333 3678888889999
Q ss_pred EeCCCcEEEEEcCC
Q 002086 747 ASEDSQVYVWKREE 760 (969)
Q Consensus 747 gs~Dg~I~IWdl~t 760 (969)
++.+..|..|+...
T Consensus 192 ~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 192 ASSSWTLECYKYQD 205 (418)
T ss_pred ecCceeEEEecHHH
Confidence 99999999998753
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=91.18 E-value=31 Score=39.07 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=38.7
Q ss_pred CCCeEEEEEcCCC------CceEEEEeCCCcEEEEeCCcc--eE-EEEeec-CCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 686 TRKITGFQFSPSN------PSEVLVTSADSRIRILDGLDI--VH-KFRGFR-NTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 686 ~~~It~l~fspd~------~~~l~sgs~Dg~I~IwD~~~~--~~-~~~~~~-~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
...++.+.|.... ..++++.-..+.|........ .. ...... ....+..+++.|||.++++-..+|.|+
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3566777776432 134444444566766664322 11 112222 233688999999999999888899875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.00 E-value=36 Score=39.55 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=68.1
Q ss_pred EEEEEecC-CcEEEEE-eCCC----cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC-----------eE
Q 002086 557 VLDLSWSR-SHLLLSS-SMDK----TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA-----------KV 619 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sg-s~Dg----tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg-----------~I 619 (969)
+..+.++| +++|+.+ +..| +|+++|+.+++.+...-.......+.|.+ ++..|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeC-CCCEEEEEEeCcccccccCCCCcEE
Confidence 33577888 6666644 4444 59999999998765331122223499998 766665554333 37
Q ss_pred EEEeCCCce---EEEEecC-CCC-EEEEEEccCCCEEEEEeCC----CcEEEEEcCCC
Q 002086 620 RIWSISDRL---VVDWTDL-HEM-VTAACYTPDGQNALIGSHK----GSCRLYSIEDS 668 (969)
Q Consensus 620 ~IWDl~~~~---~~~~~~~-~~~-V~sv~fspdg~~Lasgs~d----g~I~IwDl~~~ 668 (969)
+.|.+.+.. .+.+... ... ...+..++++++|++.... ..+++.++...
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 888887652 2222222 233 6788999999998865433 34777888764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.56 Score=49.07 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCcEEEEECCCC-cEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCC--CEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETK-SCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHE--MVT 640 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~-~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~--~V~ 640 (969)
+..++.|+.+|.|.+|+.... .....+ .-...|.++--.-.++.+..+++.||.|+.|++.-.+.+....++. ++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 578999999999999998721 111111 1222333333222255688999999999999999888777666543 344
Q ss_pred EEEEccCCCEEEEE--eCCCcEEEEEcCC
Q 002086 641 AACYTPDGQNALIG--SHKGSCRLYSIED 667 (969)
Q Consensus 641 sv~fspdg~~Lasg--s~dg~I~IwDl~~ 667 (969)
.......+++++.. +.+..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 44444444555555 5556666666543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.72 E-value=1 Score=56.26 Aligned_cols=102 Identities=14% Similarity=0.187 Sum_probs=69.6
Q ss_pred CCCEEEEEECCCeEEEEeCCCceE--EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLV--VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
....++.|+..|.|-..|+...-. ..-.....+|++++|+.+|..++.|-.+|.|.+||+..++........ .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-----~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-----G 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-----C
Confidence 356788888889999999877522 222334578999999999999999999999999999998776543221 1
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.....|..+.+..++ ..++++...|. +|.
T Consensus 173 ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQN-SKLLTSDTGGS--FWK 201 (1206)
T ss_pred CccceEEEEEEeCCC-cEEEEccCCCc--eEE
Confidence 122223333344444 46666666665 454
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=90.61 E-value=6.5 Score=46.61 Aligned_cols=156 Identities=14% Similarity=0.180 Sum_probs=85.2
Q ss_pred cCCCeEEEEEecCCCCEEEEEE---CCCeEEEEeCCCceEEEEecCCCCEEEEEEccC----CCEEEEEeCCCcEEEEEc
Q 002086 593 HNDYVTCIQFNPMDDDYFISGS---LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPD----GQNALIGSHKGSCRLYSI 665 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs---~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspd----g~~Lasgs~dg~I~IwDl 665 (969)
--.+|..++|. ||+.++-.. .+|.+++=| ..+ .+.-.-|..++|.|- -..+++.-....|.||.+
T Consensus 18 AiHPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd---s~v---iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 18 AIHPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD---SKV---IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hhccccceEec--CCCEEEEEeeeeeCCccccCC---ccE---eeccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 34678899997 566544322 233333322 122 233345889999985 335666677889999988
Q ss_pred CCC-----ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEEEEeecCCCCeEEEEEeC
Q 002086 666 EDS-----KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 666 ~~~-----~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~~~~~~~~~~V~sl~fsp 739 (969)
... +.......++. ....---.++.|+|.. ..|++-.....-.+++... ...........+.|.|.+|.+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~---e~~pvLpQGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~ 165 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIR---EPFPVLPQGCVWHPKK-AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK 165 (671)
T ss_pred ccCccccccceeeeeeecc---CCcccCCCcccccCCC-ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC
Confidence 632 22111111110 0111122457799987 3444433333333444321 122222235667799999999
Q ss_pred CCCEEEEEeC-CCcEEEEEcCC
Q 002086 740 DGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 740 dg~~LaSgs~-Dg~I~IWdl~t 760 (969)
||+.|+.+-. .=.-+|||-..
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCch
Confidence 9988876643 33467888654
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.10 E-value=4.1 Score=47.19 Aligned_cols=147 Identities=18% Similarity=0.137 Sum_probs=91.8
Q ss_pred CCCEE-EEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCC-------CEEEEEeCCCcEEEEEcCCCc-eeeeeee
Q 002086 606 DDDYF-ISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDG-------QNALIGSHKGSCRLYSIEDSK-LHQLNQV 676 (969)
Q Consensus 606 ~~~~L-~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg-------~~Lasgs~dg~I~IwDl~~~~-~~~~~~~ 676 (969)
+.++| ..|+.-..++-.|+..|+++.....+..+ -+.|.|+. ..-++|-.+..|.-.|.+-.. .+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~-- 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV-- 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee--
Confidence 34443 44666677888899999998877777666 78888853 234455556666655654322 11111
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
..+.........+..-... .++++++..|-|++||-.....+.........|..+..+.+|++|++.+. .+|.+-
T Consensus 555 --esKdY~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~ 629 (776)
T COG5167 555 --ESKDYKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLT 629 (776)
T ss_pred --eehhccccccccccccccC--ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEE
Confidence 1111122233344444444 49999999999999995443333333344556888999999999887774 578887
Q ss_pred EcCC
Q 002086 757 KREE 760 (969)
Q Consensus 757 dl~t 760 (969)
|+.-
T Consensus 630 d~~i 633 (776)
T COG5167 630 DVPI 633 (776)
T ss_pred eccc
Confidence 8754
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=90.01 E-value=36 Score=37.97 Aligned_cols=187 Identities=10% Similarity=0.081 Sum_probs=89.1
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee----cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE--E
Q 002086 557 VLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA----HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV--V 630 (969)
Q Consensus 557 I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~----h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--~ 630 (969)
..+|.|..+..+++| ..+ +.+.-...|+.-..+. -.+....+.... + ..+..++..|.|+. ....++- .
T Consensus 64 l~~I~f~~~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~-~~~~l~~~~G~iy~-T~DgG~tW~~ 138 (302)
T PF14870_consen 64 LNSISFDGNEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-D-GSAELAGDRGAIYR-TTDGGKTWQA 138 (302)
T ss_dssp EEEEEEETTEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-T-TEEEEEETT--EEE-ESSTTSSEEE
T ss_pred EEEEEecCCceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-C-CcEEEEcCCCcEEE-eCCCCCCeeE
Confidence 556777654555544 344 4444444555443332 223334444443 2 34444445554432 2222321 1
Q ss_pred EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc
Q 002086 631 DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR 710 (969)
Q Consensus 631 ~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~ 710 (969)
........+..+..+++|.+++++..-....-||--....... .......|..+.|.|++ .+.+ ....|.
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~--------~r~~~~riq~~gf~~~~-~lw~-~~~Gg~ 208 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH--------NRNSSRRIQSMGFSPDG-NLWM-LARGGQ 208 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE--------E--SSS-EEEEEE-TTS--EEE-EETTTE
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE--------ccCccceehhceecCCC-CEEE-EeCCcE
Confidence 2233446788899999999888886655556676543222211 14456889999999986 3444 448888
Q ss_pred EEEEeCCcceEEEEe----e-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 711 IRILDGLDIVHKFRG----F-RNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 711 I~IwD~~~~~~~~~~----~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
|++=+.......+.. . .....+..++|.+++...++|+ .|.++ ...+.
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~Dg 261 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDG 261 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESST
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCC
Confidence 888873333333222 1 2233478999999988777666 45443 34444
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=89.37 E-value=12 Score=43.08 Aligned_cols=149 Identities=7% Similarity=0.077 Sum_probs=75.7
Q ss_pred CCeEEEEEecCCCCEEEEEE-----------CCC-eEEEEeCCC--ce---EEEEecCCCCEEEEEEccCCCEEEEEeCC
Q 002086 595 DYVTCIQFNPMDDDYFISGS-----------LDA-KVRIWSISD--RL---VVDWTDLHEMVTAACYTPDGQNALIGSHK 657 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs-----------~Dg-~I~IWDl~~--~~---~~~~~~~~~~V~sv~fspdg~~Lasgs~d 657 (969)
.....|+|.+ +++++++-. ..+ .|.+++-.+ ++ ...+.........+++.++| |++++..
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 4567788888 777776642 223 677776543 22 22233333456889999988 4444444
Q ss_pred CcEEEEEcCCCceee-eee-e--eecccccCCCCCeEEEEEcCCCCceEEEEeCC-------------------CcEEEE
Q 002086 658 GSCRLYSIEDSKLHQ-LNQ-V--DFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-------------------SRIRIL 714 (969)
Q Consensus 658 g~I~IwDl~~~~~~~-~~~-~--~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-------------------g~I~Iw 714 (969)
...++.|........ ... + .+......+......++|.|+| .++++.+.. +.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 433344553321110 000 0 0111001124557789999998 444433311 334445
Q ss_pred eCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 715 DGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 715 D~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
+........... .......++|+++|+++++-.
T Consensus 170 ~pdg~~~e~~a~-G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAH-GFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEec-CcCCCccceECCCCCEEEEcc
Confidence 533222222121 223346788999988877644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.23 E-value=6 Score=42.87 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=46.3
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS 664 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwD 664 (969)
....|-+|+.+..++-..++.-..+...+||..++.++......+. .-.-+...-|++.+.+|.|.+|.
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~da---aGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDA---AGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccccc---ccceeccCceEEecCCceEEecc
Confidence 4567889999873344445555556688999999998876554431 22233445677778889988884
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.70 E-value=17 Score=38.12 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=80.5
Q ss_pred CEEEEEECCCeEEEEeCCC--ceEEEEecCCCCEEEEEEccCCCEEEEEeCCC------cEEEE---EcC--CCceeeee
Q 002086 608 DYFISGSLDAKVRIWSISD--RLVVDWTDLHEMVTAACYTPDGQNALIGSHKG------SCRLY---SIE--DSKLHQLN 674 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~--~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg------~I~Iw---Dl~--~~~~~~~~ 674 (969)
+.|+.+...+.|.+|++.. .+++..+..-+.|..+.++..|++|++--.+. .+|+| ... ........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 4554446678899999983 45666666668999999999999999854322 45664 222 11111100
Q ss_pred eee--------------ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE-----EEEee-------cC
Q 002086 675 QVD--------------FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH-----KFRGF-------RN 728 (969)
Q Consensus 675 ~~~--------------~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~-----~~~~~-------~~ 728 (969)
... +..-...-...+.+++..|-.+ .|++|+ ++.+.||....... .+..+ ..
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-NLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC-CEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 000 0000012245677888888663 444444 45677776332111 11111 11
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 729 TSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 729 ~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.-....++|. +.|+|..+ +-.+++.++.
T Consensus 187 ~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred CceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 1223445554 56777776 5577777764
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=88.16 E-value=23 Score=38.43 Aligned_cols=149 Identities=16% Similarity=0.180 Sum_probs=87.4
Q ss_pred CeEEEEEecCCCCEEEEEE---CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE-cCCCcee
Q 002086 596 YVTCIQFNPMDDDYFISGS---LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS-IEDSKLH 671 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs---~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwD-l~~~~~~ 671 (969)
.+.+.++++ ++..++... ....++++.......... ....+..-.|++++...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999 787776655 334456655443322222 334688889999988777777677767664 3333322
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe--CCCcEEEEeCC---cc-eEE----EE-eecCCCCeEEEEEeCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS--ADSRIRILDGL---DI-VHK----FR-GFRNTSSQISAAFNAD 740 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs--~Dg~I~IwD~~---~~-~~~----~~-~~~~~~~V~sl~fspd 740 (969)
.. .+.. ......|+.+.++|||.+..++.. .++.|++--+. .. ... .. .......++.+.|.++
T Consensus 102 ~~-~v~~----~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 102 PV-EVDW----PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred eE-Eecc----cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 11 1111 111128999999999955544442 34666665311 11 111 11 1123457889999999
Q ss_pred CCEEEEEeCCCc
Q 002086 741 GKYIISASEDSQ 752 (969)
Q Consensus 741 g~~LaSgs~Dg~ 752 (969)
+.+++.+...+.
T Consensus 177 ~~L~V~~~~~~~ 188 (253)
T PF10647_consen 177 STLVVLGRSAGG 188 (253)
T ss_pred CEEEEEeCCCCC
Confidence 988777765443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=88.16 E-value=11 Score=47.27 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=54.1
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCC----------Cce-ee--eeeeeecccccCCCCCeEEEEEcCCC--Cce
Q 002086 637 EMVTAACYTPDGQNALIGSHKGSCRLYSIED----------SKL-HQ--LNQVDFQTKKKSSTRKITGFQFSPSN--PSE 701 (969)
Q Consensus 637 ~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~----------~~~-~~--~~~~~~~~~~~~h~~~It~l~fspd~--~~~ 701 (969)
-.|..|.++|+|.+++..+..|.+.+ .+.. ++. .. ...+............|..+.|+|.+ +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 45899999999999998887664433 3321 111 11 11111122224556789999999974 478
Q ss_pred EEEEeCCCcEEEEeCCc
Q 002086 702 VLVTSADSRIRILDGLD 718 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~ 718 (969)
|++-..|+++|+||..+
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 99999999999999654
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.63 E-value=48 Score=36.39 Aligned_cols=160 Identities=14% Similarity=0.184 Sum_probs=104.3
Q ss_pred EEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE---EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 002086 588 LKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV---VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS 664 (969)
Q Consensus 588 i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~---~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwD 664 (969)
+..+.-.+-+..+.++ +++...+..+.-++|+|+.+... +......+-..++.. .|++..++..+.-+.++|
T Consensus 80 ~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivd 154 (370)
T COG5276 80 LSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVD 154 (370)
T ss_pred EEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEE
Confidence 3344566777888885 57888888888899999987542 333333333444444 588999988788888999
Q ss_pred cCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEEEEeecCCC-CeEEEEEeCCCC
Q 002086 665 IEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHKFRGFRNTS-SQISAAFNADGK 742 (969)
Q Consensus 665 l~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~~~~~~~~~-~V~sl~fspdg~ 742 (969)
+.+........ ...........++.+- ++-..+..|+-+.|.|..+ ...++.++.+.+ .+.++..+++..
T Consensus 155 vsdpssP~lag-----rya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~ 226 (370)
T COG5276 155 VSDPSSPQLAG-----RYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA 226 (370)
T ss_pred CCCCCCceeee-----eeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee
Confidence 98765433211 1122233334555553 4677778899999999764 345566665555 677888887776
Q ss_pred EEEEEeCCCcEEEEEcCCCC
Q 002086 743 YIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 743 ~LaSgs~Dg~I~IWdl~t~~ 762 (969)
|++... --+.+-|..+++
T Consensus 227 y~vvy~--egvlivd~s~~s 244 (370)
T COG5276 227 YLVVYD--EGVLIVDVSGPS 244 (370)
T ss_pred EEEEcc--cceEEEecCCCC
Confidence 666654 357777877643
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=87.09 E-value=17 Score=35.34 Aligned_cols=109 Identities=11% Similarity=0.167 Sum_probs=74.7
Q ss_pred EecC-CcEEEEEeCCCcEEEEECCC--------CcEEEEeecCCCeEEEEEecC----CCCEEEEEECCCeEEEEeCCCc
Q 002086 561 SWSR-SHLLLSSSMDKTVRLWDMET--------KSCLKLFAHNDYVTCIQFNPM----DDDYFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 561 ~fs~-~~~L~Sgs~DgtV~IWDl~t--------~~~i~~~~h~~~V~sv~fsp~----~~~~L~sgs~Dg~I~IWDl~~~ 627 (969)
.|.. ...|+.++.-|.|.|.+... ...+..+.....|++|+-.+. ..+.|+.|+ ...|..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 3443 45788888899999998763 335667788889999986653 245666665 467999999988
Q ss_pred eEEEEecCCCCEEEEEEccC---CCEEEEEeCCCcEEEEEcCCCce
Q 002086 628 LVVDWTDLHEMVTAACYTPD---GQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 628 ~~~~~~~~~~~V~sv~fspd---g~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
.-+.+....+.|.++.+-.- ..-++..+.+..|.-||....+.
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 77767777788888877432 22344444466777777665543
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=86.80 E-value=17 Score=44.53 Aligned_cols=113 Identities=12% Similarity=0.196 Sum_probs=73.4
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc--CCCCceEEEEeCCCcEEEE
Q 002086 637 EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS--PSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 637 ~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs--pd~~~~l~sgs~Dg~I~Iw 714 (969)
..+.-+.-+.-++..++-+....+.|||.+.+.+..... -.....|..+.|. |++ +.+++.+....|.+|
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~-------f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~ 101 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES-------FSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLY 101 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee-------ecCCCceeeceeeecCCC-CEEEEEEcCcEEEEE
Confidence 344555555556666665566689999999887543322 1456789999886 566 678888888999888
Q ss_pred eCC-----------cceEEEEeecC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 715 DGL-----------DIVHKFRGFRN-TSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 715 D~~-----------~~~~~~~~~~~-~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.-. ..+..+....+ ..+|.+..|.++|.+++.++ +.++|++-.
T Consensus 102 ~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 102 TQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred EccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 521 12222322222 25688899999997666554 478888753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.69 E-value=0.063 Score=64.93 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=81.1
Q ss_pred EEEEecC----CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEE-----------EecCCCCEEEEEECCCeEEEE
Q 002086 558 LDLSWSR----SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQ-----------FNPMDDDYFISGSLDAKVRIW 622 (969)
Q Consensus 558 ~~l~fs~----~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~-----------fsp~~~~~L~sgs~Dg~I~IW 622 (969)
.-|.|+| .-++..+-.+++|++.++.+...-...+|...+..++ .+| ||..|+.++.||.++.|
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFY 262 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCcccee
Confidence 4455554 4567777788888887776543211114555554443 567 88888888888888888
Q ss_pred eCCC-ce-----EEEEecCC-CCEEEEEEccCC---------CEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCC
Q 002086 623 SISD-RL-----VVDWTDLH-EMVTAACYTPDG---------QNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685 (969)
Q Consensus 623 Dl~~-~~-----~~~~~~~~-~~V~sv~fspdg---------~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h 685 (969)
.+.- ++ +..+..|. .+-.|.-|+.+. .++++++ .+..+++|.....++...+.++.......|
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~ 342 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPH 342 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCC
Confidence 7632 21 12344444 232333333221 2344444 345788888776665421111110001122
Q ss_pred CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 686 ~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
.+.|+.+....--...++.-+-++.|.+|....
T Consensus 343 ~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 343 DGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred CccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 223322211110001233456788888887443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.61 E-value=21 Score=43.62 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=52.3
Q ss_pred CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC------CeEEEEeCCCceEEEEecCCCCE-EEEEEc
Q 002086 575 KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD------AKVRIWSISDRLVVDWTDLHEMV-TAACYT 645 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D------g~I~IWDl~~~~~~~~~~~~~~V-~sv~fs 645 (969)
..+..||..+++....- .....-.+++.. ++..++.||.+ ..+..||..+..-........+. ......
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 35777888877644322 111111233333 56777777754 34778898877533322211111 111222
Q ss_pred cCCCEEEEEeCCC-----cEEEEEcCCCceee
Q 002086 646 PDGQNALIGSHKG-----SCRLYSIEDSKLHQ 672 (969)
Q Consensus 646 pdg~~Lasgs~dg-----~I~IwDl~~~~~~~ 672 (969)
-+|+..++|+.++ .+..||..+.+...
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 3677778887654 47889988776543
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.49 E-value=21 Score=42.74 Aligned_cols=181 Identities=10% Similarity=0.062 Sum_probs=88.6
Q ss_pred CcEEEEEeCCC-----cEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC--CeEEEEeCCCceEEEEecC
Q 002086 565 SHLLLSSSMDK-----TVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD--AKVRIWSISDRLVVDWTDL 635 (969)
Q Consensus 565 ~~~L~Sgs~Dg-----tV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D--g~I~IWDl~~~~~~~~~~~ 635 (969)
+.+++.|+.++ ++..||..++.....- .....-.+++.. ++...+.|+.+ ..+..||..++.-......
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE--CCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 45667777543 5777888876654432 111111122222 56777777754 3578888876654333222
Q ss_pred CCCE-EEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcE
Q 002086 636 HEMV-TAACYTPDGQNALIGSHKG---SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRI 711 (969)
Q Consensus 636 ~~~V-~sv~fspdg~~Lasgs~dg---~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I 711 (969)
..+. ......-+|+..++|+.++ .+..||..+.+........ ........+.+ ++ ..++.|+ .+
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~------~~r~~~~~~~~--~~-~IYv~GG---~~ 417 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY------YPHYKSCALVF--GR-RLFLVGR---NA 417 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC------CccccceEEEE--CC-EEEEECC---ce
Confidence 2221 1122233677777777553 4678888776654322111 01111112222 23 5555553 46
Q ss_pred EEEeCCcceEEE-EeecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCC
Q 002086 712 RILDGLDIVHKF-RGFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREE 760 (969)
Q Consensus 712 ~IwD~~~~~~~~-~~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t 760 (969)
.+||..+..-.. ........-.+++ --+|+..+.||.+ ..|.+||..+
T Consensus 418 e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 677754322111 1111111111222 2367788888764 3477777765
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=86.32 E-value=44 Score=37.05 Aligned_cols=171 Identities=12% Similarity=0.188 Sum_probs=89.6
Q ss_pred cEEEEECCCCcEEEEee-------cCCCeEEEEEecCCC----CEE-EEEECCCeEEEEeCCCceEEEEecCC-------
Q 002086 576 TVRLWDMETKSCLKLFA-------HNDYVTCIQFNPMDD----DYF-ISGSLDAKVRIWSISDRLVVDWTDLH------- 636 (969)
Q Consensus 576 tV~IWDl~t~~~i~~~~-------h~~~V~sv~fsp~~~----~~L-~sgs~Dg~I~IWDl~~~~~~~~~~~~------- 636 (969)
.|.+||+.+++.++.+. ....+..+.+...++ .++ ++=...+-|.|+|+.+++......+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 57789999999888772 345678888876322 233 33334467999999988665443321
Q ss_pred -------------CCEEEEEEcc---CCCEEEEEeCCCcEEEEEcCCC-----ceeeeeeeeecccccCC-CCCeEEEEE
Q 002086 637 -------------EMVTAACYTP---DGQNALIGSHKGSCRLYSIEDS-----KLHQLNQVDFQTKKKSS-TRKITGFQF 694 (969)
Q Consensus 637 -------------~~V~sv~fsp---dg~~Lasgs~dg~I~IwDl~~~-----~~~~~~~~~~~~~~~~h-~~~It~l~f 694 (969)
..+..++.+| +++.|......+. ++|.+.+. .........-.....+. ......+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 2245555544 4445554443221 22222211 11000000000000111 245667888
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCc-----ceEEEE-eecCCCCeEEEEEeC--CCCEEEEEe
Q 002086 695 SPSNPSEVLVTSADSRIRILDGLD-----IVHKFR-GFRNTSSQISAAFNA--DGKYIISAS 748 (969)
Q Consensus 695 spd~~~~l~sgs~Dg~I~IwD~~~-----~~~~~~-~~~~~~~V~sl~fsp--dg~~LaSgs 748 (969)
++.| .++++--..+.|..|+..+ ....+. ....-.....+.+.+ +|.+.+...
T Consensus 194 D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 194 DPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp ETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 8876 6777778889999999765 222222 222245667888888 666555543
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.29 E-value=18 Score=44.23 Aligned_cols=197 Identities=13% Similarity=0.190 Sum_probs=97.3
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE-
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW- 632 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~- 632 (969)
+...+|..+|.+..=..+.--.|+|+++.....-... .|. .+-.+.|+ +...|++...+|++++|++-.......
T Consensus 44 gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~-~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~s 120 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHG-ELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESNS 120 (829)
T ss_pred CCceEEEecccccccccccceeEEEEeccccchHHHHhcCC-Ceeeeccc--CCceEEEEeccceEEEeecchhhhcccc
Confidence 4445566665222211244456888887543333333 344 88899998 577888899999999999875543321
Q ss_pred ---ecCCCCEEEEEEccCCCEEEEEeCCCcEE-EEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC-Cc-eEEEEe
Q 002086 633 ---TDLHEMVTAACYTPDGQNALIGSHKGSCR-LYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN-PS-EVLVTS 706 (969)
Q Consensus 633 ---~~~~~~V~sv~fspdg~~Lasgs~dg~I~-IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~-~~-~l~sgs 706 (969)
......|..+.|..+|- ++-..+|.+. +-+...........+ .....+-+|-...+.+ .. .++-..
T Consensus 121 vg~e~~~~~I~ec~~f~~GV--avlt~~g~v~~i~~~~~~~~~~~~di------P~~~~~~~~Wt~~~~~~~~~~ll~v~ 192 (829)
T KOG2280|consen 121 VGFESQMSDIVECRFFHNGV--AVLTVSGQVILINGVEEPKLRKMPDI------PYNELPKSCWTVFQPHRQSTILLDVD 192 (829)
T ss_pred cccccccCceeEEEEecCce--EEEecCCcEEEEcCCCcchhhhCCCC------CCccCCCcceeEecCCCcceeEEeec
Confidence 11123354444544553 3333344443 333333222111111 1111111222222211 01 111110
Q ss_pred -CCCcEEEEeCCc-ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 707 -ADSRIRILDGLD-IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 707 -~Dg~I~IwD~~~-~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
..+ ..++.... .............+..+..||+.++|+-=..+|.|.+-+.+..+.
T Consensus 193 ~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 193 VAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred hhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 000 01111111 011111111235678899999999999999999999988876433
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=86.05 E-value=41 Score=38.00 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=86.5
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCe------EEEEeCCC-----ce-----EEEEecCCC--------CEEEEEEccCCC
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAK------VRIWSISD-----RL-----VVDWTDLHE--------MVTAACYTPDGQ 649 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~------I~IWDl~~-----~~-----~~~~~~~~~--------~V~sv~fspdg~ 649 (969)
-+.+..|.+.+ ++..+++.+.+|. +..+++.. .. ...+....+ ..-.|++.++|.
T Consensus 19 ~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 35667888887 6677777788887 66666543 11 111112211 244788877777
Q ss_pred EEEEEeCC------CcEEEEEcCCCceeeeeeeeecc-------cccCCCCCeEEEEEcCCCCceEEEEeC-----CCc-
Q 002086 650 NALIGSHK------GSCRLYSIEDSKLHQLNQVDFQT-------KKKSSTRKITGFQFSPSNPSEVLVTSA-----DSR- 710 (969)
Q Consensus 650 ~Lasgs~d------g~I~IwDl~~~~~~~~~~~~~~~-------~~~~h~~~It~l~fspd~~~~l~sgs~-----Dg~- 710 (969)
++++.-.+ ..|+.++.. ++......++... ........+-+++++|++ ..|+++.. |+.
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEEEEECccccCCCcc
Confidence 77776666 788888876 5543333222211 234456789999999998 44444421 221
Q ss_pred --------EEEE--eCCc---ceEEE--Eeec-----CCCCeEEEEEeCCCCEEEE
Q 002086 711 --------IRIL--DGLD---IVHKF--RGFR-----NTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 711 --------I~Iw--D~~~---~~~~~--~~~~-----~~~~V~sl~fspdg~~LaS 746 (969)
++|+ |... ....+ .... ....+..+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 4444 4332 12222 2111 3456778888888887764
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=85.01 E-value=39 Score=41.91 Aligned_cols=108 Identities=10% Similarity=0.073 Sum_probs=74.2
Q ss_pred EEEEEecC---CcEEEEEeCCCcEEEEECCC-------C-------------cEEEEeecCCCeEEEEEe--cCCCCEEE
Q 002086 557 VLDLSWSR---SHLLLSSSMDKTVRLWDMET-------K-------------SCLKLFAHNDYVTCIQFN--PMDDDYFI 611 (969)
Q Consensus 557 I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t-------~-------------~~i~~~~h~~~V~sv~fs--p~~~~~L~ 611 (969)
|.-|.... ...|+.+..||.|.+|.+++ . ++...+.....+++++++ . ..++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEE
Confidence 44444433 57899999999999997631 0 011223456789999998 5 567778
Q ss_pred EEECCCeEEEEeCCCc--eEE--EEecCCCCEEEEEEccCC---C---EEEEEeCCCcEEEEEc
Q 002086 612 SGSLDAKVRIWSISDR--LVV--DWTDLHEMVTAACYTPDG---Q---NALIGSHKGSCRLYSI 665 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~--~~~--~~~~~~~~V~sv~fspdg---~---~Lasgs~dg~I~IwDl 665 (969)
+++....|.||-.... +.. ....+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8877788888766442 211 122355779999998753 2 7778899999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.32 E-value=48 Score=40.12 Aligned_cols=107 Identities=14% Similarity=0.183 Sum_probs=56.4
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC------CeEEEEeCCCceEE
Q 002086 564 RSHLLLSSSMD-----KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD------AKVRIWSISDRLVV 630 (969)
Q Consensus 564 ~~~~L~Sgs~D-----gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D------g~I~IWDl~~~~~~ 630 (969)
.+.+++.|+.+ ..+..||..+++-...- .+...-.+++.. ++..++.||.+ ..+..||+.+++-.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 35666667654 35778888776543322 111111222322 56677777632 45888998876543
Q ss_pred EEecCCCCE-EEEEEccCCCEEEEEeCCC--------cEEEEEcCCCceee
Q 002086 631 DWTDLHEMV-TAACYTPDGQNALIGSHKG--------SCRLYSIEDSKLHQ 672 (969)
Q Consensus 631 ~~~~~~~~V-~sv~fspdg~~Lasgs~dg--------~I~IwDl~~~~~~~ 672 (969)
.......+. ...+...++..++.|+.++ .+.+||..+.+...
T Consensus 420 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 470 (534)
T PHA03098 420 KGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE 470 (534)
T ss_pred ecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee
Confidence 322211111 1112223566666766432 38889988776543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=83.58 E-value=71 Score=34.64 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=83.3
Q ss_pred CEEEEEecC-CcEEEEEe---CCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe-CCCce--
Q 002086 556 DVLDLSWSR-SHLLLSSS---MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS-ISDRL-- 628 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs---~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD-l~~~~-- 628 (969)
.+...++++ ++.++... ....++++... ...........+..-.|++ ++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 577888888 55554444 33344444433 3332222334777788998 677666666666666663 33332
Q ss_pred EEEE--ecCCCCEEEEEEccCCCEEEEEe---CCCcEEEEEcCCCcee-eeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 629 VVDW--TDLHEMVTAACYTPDGQNALIGS---HKGSCRLYSIEDSKLH-QLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 629 ~~~~--~~~~~~V~sv~fspdg~~Lasgs---~dg~I~IwDl~~~~~~-~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
.+.. ......|..+.++|||..++.-. .++.|.+--+....-- .................++.+.|.+++ .++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEE
Confidence 2222 22222899999999999888755 3567777655422111 100000111112345689999999987 455
Q ss_pred EEEeC
Q 002086 703 LVTSA 707 (969)
Q Consensus 703 ~sgs~ 707 (969)
+.+..
T Consensus 181 V~~~~ 185 (253)
T PF10647_consen 181 VLGRS 185 (253)
T ss_pred EEeCC
Confidence 55543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=82.88 E-value=24 Score=40.52 Aligned_cols=98 Identities=10% Similarity=0.062 Sum_probs=55.9
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCC-----cE--E-EEee-----cCCCeEEEEEecCCCCEEEEEECC------
Q 002086 556 DVLDLSWSRSHLLLSSSMDKTVRLWDMETK-----SC--L-KLFA-----HNDYVTCIQFNPMDDDYFISGSLD------ 616 (969)
Q Consensus 556 ~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~-----~~--i-~~~~-----h~~~V~sv~fsp~~~~~L~sgs~D------ 616 (969)
....+++.++. |+.++.....++.|.... +. + ..+. +......++|.| ++.+.++.+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 44677887755 444454443334454321 21 1 1122 234577899999 77766654421
Q ss_pred -------------CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEe
Q 002086 617 -------------AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 617 -------------g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs 655 (969)
|.|.-++..+++...+.........++|+++|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 456666666655443333334567899999998876533
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.73 E-value=56 Score=34.22 Aligned_cols=137 Identities=14% Similarity=0.109 Sum_probs=78.0
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE---EE
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV---VD 631 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~---~~ 631 (969)
+.++.+.|. +|...++|..+.+++..+...+.=+.++.. +..|+.+....+++.-|..+-.. +.
T Consensus 101 d~~y~LTw~----------egvaf~~d~~t~~~lg~~~y~GeGWgLt~d---~~~LimsdGsatL~frdP~tfa~~~~v~ 167 (262)
T COG3823 101 DYFYQLTWK----------EGVAFKYDADTLEELGRFSYEGEGWGLTSD---DKNLIMSDGSATLQFRDPKTFAELDTVQ 167 (262)
T ss_pred ceEEEEEec----------cceeEEEChHHhhhhcccccCCcceeeecC---CcceEeeCCceEEEecCHHHhhhcceEE
Confidence 455666664 577788999999999999888888888874 44566665556677777654211 11
Q ss_pred EecCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee----cccccCCCCCeEEEEEcCCCCceEEE
Q 002086 632 WTDLH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF----QTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 632 ~~~~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~----~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
..... ..++.+.|- +|...|-.=.+..|...+..+++......+.- ......+..-.+.|++.|+...++++
T Consensus 168 VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 168 VTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred EEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 11111 222333332 34444433334445555555555443222210 01113445677889999988666666
Q ss_pred E
Q 002086 705 T 705 (969)
Q Consensus 705 g 705 (969)
|
T Consensus 247 G 247 (262)
T COG3823 247 G 247 (262)
T ss_pred c
Confidence 5
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=82.32 E-value=1.5e+02 Score=37.57 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=47.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeE-------------EEEEec-CCCCEEEEEEC----------CCeEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVT-------------CIQFNP-MDDDYFISGSL----------DAKVR 620 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~-------------sv~fsp-~~~~~L~sgs~----------Dg~I~ 620 (969)
+..++.++.|+.|.-.|.++|+.+..|+..+.|. .+.-.| ..++.+++|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 4688889999999999999999998776554431 011111 02456666643 68899
Q ss_pred EEeCCCceEEEE
Q 002086 621 IWSISDRLVVDW 632 (969)
Q Consensus 621 IWDl~~~~~~~~ 632 (969)
-+|.++++++-.
T Consensus 340 A~Da~TGkl~W~ 351 (764)
T TIGR03074 340 AFDVNTGALVWA 351 (764)
T ss_pred EEECCCCcEeeE
Confidence 999999987744
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.25 E-value=23 Score=41.52 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=57.6
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEE---------cCCCceeeeee-eee--cccccCCCCCeEEEEEcCCC--CceEE
Q 002086 638 MVTAACYTPDGQNALIGSHKGSCRLYS---------IEDSKLHQLNQ-VDF--QTKKKSSTRKITGFQFSPSN--PSEVL 703 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasgs~dg~I~IwD---------l~~~~~~~~~~-~~~--~~~~~~h~~~It~l~fspd~--~~~l~ 703 (969)
.|..+..++.|..++..+.+|.+.++= +++++....+. +.+ ........-.+..++|+|+. +..++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 478888999999999999999776653 23333221111 111 11112344567778999987 67899
Q ss_pred EEeCCCcEEEEeCCcceEEE
Q 002086 704 VTSADSRIRILDGLDIVHKF 723 (969)
Q Consensus 704 sgs~Dg~I~IwD~~~~~~~~ 723 (969)
+-+.|..||+|+..+....+
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 99999999999977655544
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=81.67 E-value=3.7 Score=31.53 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=26.6
Q ss_pred cCEEEEEEeCCC---CEEEEEeCCCcEEEEeccc
Q 002086 452 GSIWTIKFSLDA---RFLASAGEDRVIHVWEVQE 482 (969)
Q Consensus 452 ~~I~~l~fSpDg---~~LaTgs~DgtVrIWDl~t 482 (969)
|+|.+|+|||+. .+|+.+-.-+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 579999999844 4899988889999999984
|
It contains a characteristic DLL sequence motif. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=81.19 E-value=41 Score=41.24 Aligned_cols=103 Identities=16% Similarity=0.255 Sum_probs=65.3
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEEcCC-----C--ceeeeee
Q 002086 607 DDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYT--PDGQNALIGSHKGSCRLYSIED-----S--KLHQLNQ 675 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fs--pdg~~Lasgs~dg~I~IwDl~~-----~--~~~~~~~ 675 (969)
+...++-+....+.|||.+.+...... ...+.|..+.|. |+|+.+++.+....|.+|.-.. . .......
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~ 120 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK 120 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence 333334444456999999988754433 346889999885 5888898888899999985421 1 1111222
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
+.+. .....+|.+..|.++| .+++|+ ++.+.|+|
T Consensus 121 i~i~---~~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 121 IDIS---SHTPHPIGDSIWLKDG--TLVVGS-GNQLFVFD 154 (631)
T ss_pred EEee---cCCCCCccceeEecCC--eEEEEe-CCEEEEEC
Confidence 2111 2223678999999987 444443 56788887
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=80.93 E-value=12 Score=39.87 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=51.1
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE-------e--------cCCCCEEEEEEccCCCEEEEEeCCCc
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW-------T--------DLHEMVTAACYTPDGQNALIGSHKGS 659 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-------~--------~~~~~V~sv~fspdg~~Lasgs~dg~ 659 (969)
.++..+.. .+.++++...+|.+++||+.+++.+.. . .....|..+.++.+|.-+++-+ +|.
T Consensus 13 s~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~ 88 (219)
T PF07569_consen 13 SPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD 88 (219)
T ss_pred CceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence 34444443 678999999999999999998865421 1 2446688888888887766654 578
Q ss_pred EEEEEcCCCc
Q 002086 660 CRLYSIEDSK 669 (969)
Q Consensus 660 I~IwDl~~~~ 669 (969)
.+.|+..-+.
T Consensus 89 ~y~y~~~L~~ 98 (219)
T PF07569_consen 89 SYSYSPDLGC 98 (219)
T ss_pred EEEeccccce
Confidence 8888876543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.83 E-value=1.1e+02 Score=34.79 Aligned_cols=155 Identities=11% Similarity=0.097 Sum_probs=82.4
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-EEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-VVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
...+.++.+.+ ++.++ ..+..|.+..-.-..++ -.. .......++.+.+.+++..+++| ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~-~g~~v-~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYV-AVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECC-CCeEE-EEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45788999988 55444 45556655432112222 111 12234678999999999877765 4576653233443321
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe-CCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD-GLDIVHKFRG-FRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD-~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
..... ........+..+.+.+++ .+++++.+|.|..=. ....-..... ..-......+.|..+++.++ .+.
T Consensus 249 ~~~~~----~~~~~~~~l~~v~~~~~~--~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 321 (334)
T PRK13684 249 SKPII----PEITNGYGYLDLAYRTPG--EIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ 321 (334)
T ss_pred ccccC----CccccccceeeEEEcCCC--CEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence 11100 001123457888998865 455666677665422 1111111111 11123466778777766655 455
Q ss_pred CCcEEEEEc
Q 002086 750 DSQVYVWKR 758 (969)
Q Consensus 750 Dg~I~IWdl 758 (969)
.|.|..|+=
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 788887753
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=80.73 E-value=1.1e+02 Score=34.70 Aligned_cols=105 Identities=15% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCcEEEEEeCC-------CcEEEEECCCCcEEEEeec--CC-----CeEEEEEecCCCCEEEEEECC-----CeEEEEeC
Q 002086 564 RSHLLLSSSMD-------KTVRLWDMETKSCLKLFAH--ND-----YVTCIQFNPMDDDYFISGSLD-----AKVRIWSI 624 (969)
Q Consensus 564 ~~~~L~Sgs~D-------gtV~IWDl~t~~~i~~~~h--~~-----~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl 624 (969)
.+.+++.|+.+ ..+.+||+.+.+-...-.. .. ....+.+ ++.+++.|+.+ ..+.+||+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666666653 3578889887654432211 11 1222333 46677777754 34788998
Q ss_pred CCceEEEEecC-----C-CCEEEEEEccCCCEEEEEeCC-----------CcEEEEEcCCCcee
Q 002086 625 SDRLVVDWTDL-----H-EMVTAACYTPDGQNALIGSHK-----------GSCRLYSIEDSKLH 671 (969)
Q Consensus 625 ~~~~~~~~~~~-----~-~~V~sv~fspdg~~Lasgs~d-----------g~I~IwDl~~~~~~ 671 (969)
.+.+-...... . ......+..-++++++.|+.+ ..+.+||..+.+-.
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 87653332211 1 111222223355666776643 24778888876543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=80.55 E-value=1.7e+02 Score=36.85 Aligned_cols=190 Identities=9% Similarity=0.079 Sum_probs=87.2
Q ss_pred EEEecC-CcEEEEEeC-C-----CcEEEEECCCC--cEEEEeec-CCCeEEEEEecCCCCEEEEEEC---CCeEEEEeCC
Q 002086 559 DLSWSR-SHLLLSSSM-D-----KTVRLWDMETK--SCLKLFAH-NDYVTCIQFNPMDDDYFISGSL---DAKVRIWSIS 625 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs~-D-----gtV~IWDl~t~--~~i~~~~h-~~~V~sv~fsp~~~~~L~sgs~---Dg~I~IWDl~ 625 (969)
.++|.+ ++.|+.... + ..|+.+++.++ +-..++.. .....-..+.+.++.+++..+. ++.+.+|+..
T Consensus 176 ~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 176 SFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 477876 444444332 2 46888899888 43444432 2223322233326666554433 3568888852
Q ss_pred --CceEEEEecCC-CCEEEEEEccCCCEEEEEeCC--Cc--EEEEEcCC-CceeeeeeeeecccccC-CCCCeEEEEEcC
Q 002086 626 --DRLVVDWTDLH-EMVTAACYTPDGQNALIGSHK--GS--CRLYSIED-SKLHQLNQVDFQTKKKS-STRKITGFQFSP 696 (969)
Q Consensus 626 --~~~~~~~~~~~-~~V~sv~fspdg~~Lasgs~d--g~--I~IwDl~~-~~~~~~~~~~~~~~~~~-h~~~It~l~fsp 696 (969)
.+......... .....+. +.. ..|..-+.. .. |...++.. .+... .... ....|..+.+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~--------l~~~~~~~~i~~~~~~~ 325 (686)
T PRK10115 256 LADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEE--------LIPPRENIMLEGFTLFT 325 (686)
T ss_pred CCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeE--------EECCCCCCEEEEEEEEC
Confidence 33322223332 2222222 222 344333322 23 33334432 11100 0012 234677788773
Q ss_pred CCCceEEEEeCCCcEEEE--eCCc-ceEEEEeecCCCCeEEEEEe--CCC-CEEEEEeC---CCcEEEEEcCCC
Q 002086 697 SNPSEVLVTSADSRIRIL--DGLD-IVHKFRGFRNTSSQISAAFN--ADG-KYIISASE---DSQVYVWKREEH 761 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~Iw--D~~~-~~~~~~~~~~~~~V~sl~fs--pdg-~~LaSgs~---Dg~I~IWdl~t~ 761 (969)
+ .++++...++.-+++ +... ....+. ......+..+.++ +++ .++++.+. -+.|+.+|+.++
T Consensus 326 ~--~l~~~~~~~g~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 326 D--WLVVEERQRGLTSLRQINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred C--EEEEEEEeCCEEEEEEEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 2 566666777765544 4322 122111 1112223333344 343 35554443 367888888764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=80.16 E-value=31 Score=39.04 Aligned_cols=111 Identities=18% Similarity=0.273 Sum_probs=59.9
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce-eeeeeeeecccccCCCCCeEEEEEcCC---CCceEEEEeCC-----
Q 002086 638 MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL-HQLNQVDFQTKKKSSTRKITGFQFSPS---NPSEVLVTSAD----- 708 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~-~~~~~~~~~~~~~~h~~~It~l~fspd---~~~~l~sgs~D----- 708 (969)
..+.|+|.|+|++++ +...|.|++++ ..+.. .....+ .............++++|+ +..++++.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~--~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADL--PEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE---TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceeccc--ccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 467899999987655 56699999999 44443 111111 1223455678899999994 22334443421
Q ss_pred ---CcEEEEeCCc-------ceEEEEee----cCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 709 ---SRIRILDGLD-------IVHKFRGF----RNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 709 ---g~I~IwD~~~-------~~~~~~~~----~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
..|.-|.... ....+... ........|.|.|||.+.++.+..+.
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 1233332111 11122221 12344567999999987777776554
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 969 | ||||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-17 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 7e-17 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-16 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-16 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-16 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 6e-16 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 6e-16 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 6e-16 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 9e-16 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 9e-16 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 9e-16 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-15 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-15 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-15 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-15 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-15 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-15 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-11 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 4e-10 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 8e-10 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-09 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 8e-09 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 5e-06 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-07 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-07 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 7e-07 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 9e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-06 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-06 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 1e-06 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-06 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 1e-06 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-06 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 3e-06 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 6e-06 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-05 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 2e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-05 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 2e-05 | ||
| 4e5z_B | 436 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 8e-05 | ||
| 3ei4_B | 436 | Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | 8e-05 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 9e-05 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 9e-05 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 9e-05 | ||
| 4e54_B | 435 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 9e-05 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 9e-05 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 9e-05 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 2e-04 |
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436 | Back alignment and structure |
|
| >pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 969 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.98 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.98 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.98 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.98 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.96 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.96 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.95 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.94 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.94 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.93 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.93 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.93 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.93 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.93 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.93 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.92 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.92 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.91 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.91 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.91 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.9 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.9 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.84 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.83 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.83 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.82 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.82 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.81 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.81 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.8 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.8 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.79 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.79 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.78 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.78 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.76 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.76 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.76 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.75 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.75 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.74 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.74 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.74 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.74 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.74 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.73 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.72 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.72 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.68 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.67 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.66 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.64 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.63 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.63 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.62 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.61 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.6 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.58 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.57 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.56 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.56 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.55 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.52 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.51 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.51 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.5 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.49 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.48 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.44 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.44 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.42 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.4 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.4 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.37 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.36 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.35 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.35 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.34 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.33 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.31 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.3 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.3 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.29 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.29 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.29 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.24 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.23 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.22 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.19 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.17 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.16 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.16 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.13 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.1 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.1 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.1 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.08 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.07 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.07 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.05 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.05 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.03 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.02 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.01 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.94 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.93 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.93 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.92 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.85 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.85 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.84 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.79 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.78 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.7 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.67 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.58 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.55 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.55 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.52 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.5 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.48 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.48 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.45 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.44 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.44 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.42 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.38 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.37 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.36 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.35 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.33 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.26 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.26 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.24 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.21 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.2 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.19 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.16 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.16 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.15 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.15 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.12 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.12 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.12 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.06 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.04 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.03 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.99 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.91 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.86 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.81 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.8 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.79 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.78 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.78 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.73 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.72 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.71 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.67 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.67 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.63 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.57 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.57 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.57 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.54 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.46 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.46 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.46 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.41 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.37 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.28 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.27 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.2 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.09 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.09 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.08 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.01 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.97 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.96 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.96 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.83 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.82 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.8 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.79 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.78 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.68 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.61 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.55 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.44 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.27 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.21 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.15 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.03 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.01 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 95.89 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.81 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.68 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.47 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.45 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.45 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.24 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.14 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.01 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.72 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 94.65 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.58 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.5 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.44 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.36 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.35 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.26 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 93.97 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 93.79 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.29 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 93.05 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 92.86 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 92.7 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 92.46 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 92.42 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 92.14 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 91.99 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 91.8 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 91.73 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 91.32 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 91.06 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 91.02 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 90.52 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 90.36 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 89.89 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 89.59 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 89.14 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 88.62 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 87.66 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 86.6 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 86.27 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 85.4 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 84.35 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 81.65 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 81.08 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 80.2 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=387.87 Aligned_cols=477 Identities=18% Similarity=0.284 Sum_probs=347.4
Q ss_pred cCCcEEEEeeCCCCcEE----------EEeeccCCCcee---------EEEecCCCceeeeeehhhccCCCcceeeeecc
Q 002086 287 RLGAFFLIKNLDTGKEF----------IVNEYSENGMWN---------KLSDLQTGKQLTMEEFEKSVGHSPVVKELMRR 347 (969)
Q Consensus 287 ~~~~~~~i~~ld~g~~~----------vv~~~~~dg~~~---------~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~ 347 (969)
+.++.++|||+ +|+.+ ....|++||.++ +|||+ +++. +..+.||...|.++++.
T Consensus 35 ~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~-----~~~~~~~~~~v~~~~~s 107 (577)
T 2ymu_A 35 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQL-----LQTLTGHSSSVRGVAFS 107 (577)
T ss_dssp ETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCE-----EEEECCCSSCEEEEEEC
T ss_pred eCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCE-----EEEEECCCCCEEEEEEC
Confidence 35678888886 34332 234466776655 89996 5555 35678999999999998
Q ss_pred cccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEE
Q 002086 348 ENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVK 427 (969)
Q Consensus 348 ~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~ 427 (969)
.+...+++++.+..+..|....... ..............+.++...+... ..... +.
T Consensus 108 ~d~~~l~~~~~d~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~---------------~~~~~--~~ 164 (577)
T 2ymu_A 108 PDGQTIASASDDKTVKLWNRNGQLL------QTLTGHSSSVWGVAFSPDGQTIASA---------------SDDKT--VK 164 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETTCCEE------EEECCCSSCEEEEEECTTSSCEEEE---------------ETTSE--EE
T ss_pred CCCCEEEEEcCCCceeeccccccee------eeccCCCCceeeeeeecCCccceec---------------ccccc--ee
Confidence 8888888888888777665321111 1122222333344444444332111 01111 11
Q ss_pred EccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCC
Q 002086 428 VRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKA 507 (969)
Q Consensus 428 v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~ 507 (969)
++ . ........+..|.+.|.+++|+|++++|++++.|+.|++||. +++.+..+.++...+..+.+.+....
T Consensus 165 ~~-------~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~ 235 (577)
T 2ymu_A 165 LW-------N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT 235 (577)
T ss_dssp EE-------C-TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred cc-------c-cceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCE
Confidence 11 1 123445667889999999999999999999999999999996 46666666666666655554443221
Q ss_pred ccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc
Q 002086 508 SSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS 586 (969)
Q Consensus 508 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~ 586 (969)
....+ ......+|....+.+..+.+|...|.+++|+| +..|++++.|++|++||... +
T Consensus 236 l~~~~--------------------~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~ 294 (577)
T 2ymu_A 236 IASAS--------------------DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-Q 294 (577)
T ss_dssp EEEEE--------------------TTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-C
T ss_pred EEEEe--------------------CCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-c
Confidence 11100 01112456666777888999999999999999 78999999999999999764 4
Q ss_pred EEEE-eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002086 587 CLKL-FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSI 665 (969)
Q Consensus 587 ~i~~-~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl 665 (969)
.+.. .+|...|.+++|+| ++.+|++++.|+.|++||+....+..+..+...+.+++|+|++++|++|+.||.|++||.
T Consensus 295 ~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 295 LLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence 4444 48999999999999 999999999999999999998888888889999999999999999999999999999996
Q ss_pred CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEE
Q 002086 666 EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYII 745 (969)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~La 745 (969)
.. +.... ...|...|.+++|+|++ .+|++++.|+.|++||... ........|...|++++|+||+++|+
T Consensus 374 ~~-~~~~~--------~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 374 NG-QLLQT--------LTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp TC-CEEEE--------EECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC-CEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CC-CEEEE--------ecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-CEEEEecCCCCCeEEEEECCCCCEEE
Confidence 54 33221 25688899999999998 7999999999999999543 22233345677899999999999999
Q ss_pred EEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCC
Q 002086 746 SASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPT 825 (969)
Q Consensus 746 Sgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~ 825 (969)
+++.|+.|++||+.. +.+.....+.. .....+++|+
T Consensus 443 ~~~~d~~v~~w~~~~-------~~~~~~~~~~~-------------------------------------~v~~~~~spd 478 (577)
T 2ymu_A 443 SASDDKTVKLWNRNG-------QLLQTLTGHSS-------------------------------------SVRGVAFSPD 478 (577)
T ss_dssp EEETTSEEEEEETTS-------CEEEEEECCSS-------------------------------------CEEEEEECTT
T ss_pred EEcCCCEEEEEECCC-------CEEEEEcCCCC-------------------------------------CEEEEEEcCC
Confidence 999999999999753 22211111111 1123457889
Q ss_pred CCCccccCCCCccccCCCCCCccccCCCCCCCCccccccCCCCCCccccC-CCccc
Q 002086 826 KEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSN-SSSIR 880 (969)
Q Consensus 826 ~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s-~~~~r 880 (969)
+.++++++.++.+..|.. ++...+.+..|...+.++.++|.-.-+++.+ +..+|
T Consensus 479 ~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~ 533 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 533 (577)
T ss_dssp SCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred CCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEE
Confidence 999999999999999985 4666777788999999999999866555554 45555
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-40 Score=396.89 Aligned_cols=438 Identities=15% Similarity=0.158 Sum_probs=324.8
Q ss_pred eeCCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccccc
Q 002086 295 KNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSK 374 (969)
Q Consensus 295 ~~ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k 374 (969)
++. +|+.++... +..++|||+++++. ...+.||...|.++++..++..+++++.|..+..|..... .
T Consensus 26 ~sp-dg~~l~~~~----~~~v~l~~~~~~~~-----~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~---~ 92 (611)
T 1nr0_A 26 NTP-AGDKIQYCN----GTSVYTVPVGSLTD-----TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT---T 92 (611)
T ss_dssp ECT-TSSEEEEEE----TTEEEEEETTCSSC-----CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST---T
T ss_pred eCC-CCCEEEeCC----CCEEEEecCCCccc-----CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCC---c
Confidence 444 455555442 34678999988876 3556899999999999999999999999998877763211 0
Q ss_pred cccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCE
Q 002086 375 RRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSI 454 (969)
Q Consensus 375 ~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I 454 (969)
......+..+.+.+..++|+++...+... + .+......++++..+ ....+|.+|.+.|
T Consensus 93 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~~----~---------~~~~~~~~v~~wd~~---------~~~~~l~gh~~~v 150 (611)
T 1nr0_A 93 HILKTTIPVFSGPVKDISWDSESKRIAAV----G---------EGRERFGHVFLFDTG---------TSNGNLTGQARAM 150 (611)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCEEEEE----E---------CCSSCSEEEEETTTC---------CBCBCCCCCSSCE
T ss_pred ceeeEeecccCCceEEEEECCCCCEEEEE----E---------CCCCceeEEEEeeCC---------CCcceecCCCCCc
Confidence 11111233344566677777776553321 0 111122344454433 3455688999999
Q ss_pred EEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 455 WTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 455 ~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
++++|+|++. +|++|+.|++|+|||..+++++.
T Consensus 151 ~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~---------------------------------------------- 184 (611)
T 1nr0_A 151 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS---------------------------------------------- 184 (611)
T ss_dssp EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE----------------------------------------------
T ss_pred eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee----------------------------------------------
Confidence 9999999987 69999999999999987665443
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--------ecCCCeEEEEEec
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--------AHNDYVTCIQFNP 604 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--------~h~~~V~sv~fsp 604 (969)
.+.+|...|.+++|+| +++|++|+.|++|+|||+.+++++..+ +|.+.|.+++|+|
T Consensus 185 ---------------~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 185 ---------------TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp ---------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred ---------------eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC
Confidence 5678999999999999 889999999999999999999998877 6999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEE--------------------------------------------EecCCCCEE
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVD--------------------------------------------WTDLHEMVT 640 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~--------------------------------------------~~~~~~~V~ 640 (969)
++.+|++++.|++|++||+.+++.+. +.+|...|+
T Consensus 250 -dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~ 328 (611)
T 1nr0_A 250 -DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAIT 328 (611)
T ss_dssp -TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEE
T ss_pred -CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEE
Confidence 99999999999999999998765432 235778899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 641 AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 641 sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
+++|+|+|++|++++.|++|++||+.++...... ...|...|.+++|++++ .+++++.|+.+++|+.....
T Consensus 329 ~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~-------~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 329 ALSSSADGKTLFSADAEGHINSWDISTGISNRVF-------PDVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-------SCSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSSSS
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec-------ccCCcceEEEEEECCCC--cEEEEEcCCceEEeecCCcc
Confidence 9999999999999999999999999988754321 14688899999999764 78899999999999853210
Q ss_pred E---------------E-------------------------EEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 721 H---------------K-------------------------FRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 721 ~---------------~-------------------------~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
. . .....+...+.+++|+|||++|++|+.|+.|+|||+.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~ 479 (611)
T 1nr0_A 400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 479 (611)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred ccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC
Confidence 0 0 01112345678999999999999999999999999976
Q ss_pred CCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCcccc
Q 002086 761 HRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPP 840 (969)
Q Consensus 761 ~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~ 840 (969)
. .........| .......++||++.++++++.++.+..
T Consensus 480 ~------~~~~~~~~~h------------------------------------~~~v~~v~fspdg~~las~s~d~~v~~ 517 (611)
T 1nr0_A 480 A------SVSEVKTIVH------------------------------------PAEITSVAFSNNGAFLVATDQSRKVIP 517 (611)
T ss_dssp T------EEEEEEEEEC------------------------------------SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred C------ceeeeeccCC------------------------------------CCceEEEEECCCCCEEEEEcCCCCEEE
Confidence 2 1100000000 011224567999999999999999999
Q ss_pred CCCCC-CccccC--CCCCCCCccccccCCCCCCccccC-CCccc
Q 002086 841 LPKKT-NKVERV--PSPPEEELSLISHDPGISESFTSN-SSSIR 880 (969)
Q Consensus 841 ~~~~s-~~~~~~--l~~pee~l~~is~hP~~~~~~~~s-~~~~r 880 (969)
|.... +.+... ...|...+.++.++|.-.-+.+.| +.++|
T Consensus 518 w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~ 561 (611)
T 1nr0_A 518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 561 (611)
T ss_dssp EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEE
Confidence 98765 444433 234889999999999865455444 66666
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-38 Score=379.37 Aligned_cols=376 Identities=16% Similarity=0.237 Sum_probs=280.7
Q ss_pred CcEEEEeeCCCCcE----------EEEeeccCCCcee---------EEEecCCCceeeeeehhhccCCCcceeeeecccc
Q 002086 289 GAFFLIKNLDTGKE----------FIVNEYSENGMWN---------KLSDLQTGKQLTMEEFEKSVGHSPVVKELMRREN 349 (969)
Q Consensus 289 ~~~~~i~~ld~g~~----------~vv~~~~~dg~~~---------~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~ 349 (969)
+..++||++++++. +.+..|++||.++ +|||+.+++.+. ...+.+|...|.++++..+
T Consensus 38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~---~~~~~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL---KTTIPVFSGPVKDISWDSE 114 (611)
T ss_dssp TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE---EEEEECSSSCEEEEEECTT
T ss_pred CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCccee---eEeecccCCceEEEEECCC
Confidence 35788888876543 3345577777765 999998776532 2345799999999998888
Q ss_pred cccccCCCCc----ccccccccccccccccccccccceeeeeEEEeeecCCccc-cCCCCcccchHHHHHHhhccccCcc
Q 002086 350 VNRINDSAGK----FSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKEC-INPNPLLGDQREQKEQKQNKNVSNH 424 (969)
Q Consensus 350 ~~~~~t~s~d----~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 424 (969)
+..+++++.+ ..+..|.. ......+..+...+.++.|+++... +.+ ...+..+
T Consensus 115 g~~l~~~~~~~~~~~~v~~wd~-------~~~~~~l~gh~~~v~~v~f~p~~~~~l~s---------------~s~D~~v 172 (611)
T 1nr0_A 115 SKRIAAVGEGRERFGHVFLFDT-------GTSNGNLTGQARAMNSVDFKPSRPFRIIS---------------GSDDNTV 172 (611)
T ss_dssp SCEEEEEECCSSCSEEEEETTT-------CCBCBCCCCCSSCEEEEEECSSSSCEEEE---------------EETTSCE
T ss_pred CCEEEEEECCCCceeEEEEeeC-------CCCcceecCCCCCceEEEECCCCCeEEEE---------------EeCCCeE
Confidence 7777665443 23444431 1122234445555666666666431 111 1123333
Q ss_pred eEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCC
Q 002086 425 WVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 425 ~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~ 504 (969)
. +|+....++..+|.+|.+.|++++|+|||++||||+.|++|+|||+.+++.+..+...
T Consensus 173 ~---------lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~------------ 231 (611)
T 1nr0_A 173 A---------IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD------------ 231 (611)
T ss_dssp E---------EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT------------
T ss_pred E---------EEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccc------------
Confidence 2 3355667788899999999999999999999999999999999999988776532100
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME 583 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~ 583 (969)
.....+|.+.|.+++|+| +.+|++++.|++|+|||+.
T Consensus 232 ------------------------------------------~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 232 ------------------------------------------SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp ------------------------------------------TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ------------------------------------------cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 001236999999999999 7899999999999999998
Q ss_pred CCcEEEEe--------------------------------------------ecCCCeEEEEEecCCCCEEEEEECCCeE
Q 002086 584 TKSCLKLF--------------------------------------------AHNDYVTCIQFNPMDDDYFISGSLDAKV 619 (969)
Q Consensus 584 t~~~i~~~--------------------------------------------~h~~~V~sv~fsp~~~~~L~sgs~Dg~I 619 (969)
+++++..+ +|...|++++|+| ++.+|++++.|++|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v 348 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHI 348 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcE
Confidence 87655322 6889999999999 99999999999999
Q ss_pred EEEeCCCceEEEEe------------------------------------------------------------------
Q 002086 620 RIWSISDRLVVDWT------------------------------------------------------------------ 633 (969)
Q Consensus 620 ~IWDl~~~~~~~~~------------------------------------------------------------------ 633 (969)
++||+.++......
T Consensus 349 ~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~ 428 (611)
T 1nr0_A 349 NSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 428 (611)
T ss_dssp EEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEE
T ss_pred EEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEE
Confidence 99998765432211
Q ss_pred -----------------cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 634 -----------------DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 634 -----------------~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.+...+.+++|+|+|++|++|+.|++|++||+.+....... . ..|...|++++|+|
T Consensus 429 ~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~------~-~~h~~~v~~v~fsp 501 (611)
T 1nr0_A 429 ACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK------T-IVHPAEITSVAFSN 501 (611)
T ss_dssp EESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE------E-EECSSCEEEEEECT
T ss_pred EeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeee------c-cCCCCceEEEEECC
Confidence 11234678999999999999999999999999876542211 1 46888999999999
Q ss_pred CCCceEEEEeCCCcEEEEeCCc-ceEEEE-ee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 697 SNPSEVLVTSADSRIRILDGLD-IVHKFR-GF-RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~-~~~~~~-~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++ .+|++++.|++|++|+... ...... .. .|...|.+++|+|||++|++|+.|++|+||++.++
T Consensus 502 dg-~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 502 NG-AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp TS-SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred CC-CEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 98 8999999999999999765 222111 12 27788999999999999999999999999999874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=358.40 Aligned_cols=478 Identities=18% Similarity=0.265 Sum_probs=347.7
Q ss_pred cCCcEEEEeeCCCCcEE----------EEeeccCCCcee---------EEEecCCCceeeeeehhhccCCCcceeeeecc
Q 002086 287 RLGAFFLIKNLDTGKEF----------IVNEYSENGMWN---------KLSDLQTGKQLTMEEFEKSVGHSPVVKELMRR 347 (969)
Q Consensus 287 ~~~~~~~i~~ld~g~~~----------vv~~~~~dg~~~---------~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~ 347 (969)
+.|..++|||++ |+.+ ....|++||.++ ++|+...... ....+|...|..+.+.
T Consensus 76 ~~d~~i~vWd~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~ 148 (577)
T 2ymu_A 76 SDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL------QTLTGHSSSVWGVAFS 148 (577)
T ss_dssp ETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE------EEECCCSSCEEEEEEC
T ss_pred eCCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccccee------eeccCCCCceeeeeee
Confidence 357788899864 3332 223466666655 7888766544 4457899999999977
Q ss_pred cccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEE
Q 002086 348 ENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVK 427 (969)
Q Consensus 348 ~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~ 427 (969)
.+...+..++.+.....|..... .........+....+.+.++...+... ..++ .++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~---------------~~d~--~v~ 205 (577)
T 2ymu_A 149 PDGQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVWGVAFSPDGQTIASA---------------SDDK--TVK 205 (577)
T ss_dssp TTSSCEEEEETTSEEEEECTTSC------EEEEEECCSSCEEEEEECTTSSCEEEE---------------ETTS--EEE
T ss_pred cCCccceecccccceecccccee------eeeeccCCCcceeeeeecCCCCEEEEE---------------cCCC--EEE
Confidence 77766666666665554432111 111112222333444455554432221 1222 233
Q ss_pred EccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCC
Q 002086 428 VRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKA 507 (969)
Q Consensus 428 v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~ 507 (969)
++ +. ..+.++.+.+|.+.|.+++|+|++++|++++.|+.|++||.. ++.+..+.++...+..+.+.+....
T Consensus 206 ~w-------~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~ 276 (577)
T 2ymu_A 206 LW-------NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQT 276 (577)
T ss_dssp EE-------CT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSE
T ss_pred EE-------eC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCE
Confidence 33 22 345678899999999999999999999999999999999964 5666667766666655544433221
Q ss_pred ccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc
Q 002086 508 SSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS 586 (969)
Q Consensus 508 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~ 586 (969)
..... ......+|....+.+..+.+|...|++++|+| +.+|++++.|++|++||+....
T Consensus 277 l~~~~--------------------~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~ 336 (577)
T 2ymu_A 277 IASAS--------------------DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336 (577)
T ss_dssp EEEEE--------------------TTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE
T ss_pred EEEEe--------------------CCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe
Confidence 11100 01123456667778888999999999999999 7899999999999999998777
Q ss_pred EEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 002086 587 CLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIE 666 (969)
Q Consensus 587 ~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~ 666 (969)
.....+|...|.+++|+| ++.+|++++.|+.|++||.....+..+..|...|.+++|+|++++|++++.|+.|++||..
T Consensus 337 ~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 337 LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred eEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 666668999999999999 9999999999999999998776677778888999999999999999999999999999965
Q ss_pred CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEE
Q 002086 667 DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaS 746 (969)
. +.... ...|...|++++|+|++ .+|++++.|+.|++||... ........|...|.+++|+||+++|++
T Consensus 416 ~-~~~~~--------~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 416 G-QLLQT--------LTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp C-CEEEE--------EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred C-CEEEE--------ecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 4 32221 25788999999999988 7999999999999999543 223344456788999999999999999
Q ss_pred EeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCC
Q 002086 747 ASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTK 826 (969)
Q Consensus 747 gs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~ 826 (969)
++.|+.|+||+.. ++.+..+..+... ....+++|++
T Consensus 485 ~~~d~~i~iw~~~-------~~~~~~~~~h~~~-------------------------------------v~~l~~s~dg 520 (577)
T 2ymu_A 485 ASDDKTVKLWNRN-------GQLLQTLTGHSSS-------------------------------------VRGVAFSPDG 520 (577)
T ss_dssp EETTSEEEEEETT-------SCEEEEEECCSSC-------------------------------------EEEEEECTTS
T ss_pred EeCCCEEEEEcCC-------CCEEEEEeCCCCC-------------------------------------EEEEEEcCCC
Confidence 9999999999964 2322222111111 1234578999
Q ss_pred CCccccCCCCccccCCCCCCccccCCCCCCCCccccccCCCCCCccccC-CCccc
Q 002086 827 EGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSN-SSSIR 880 (969)
Q Consensus 827 ~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s-~~~~r 880 (969)
.++++++.++.+..|.. ++....++..|...+.++.++|.-..+++.+ |.++|
T Consensus 521 ~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~ 574 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVK 574 (577)
T ss_dssp SCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred CEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 99999999999999985 4566677788999999999999866565554 44444
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=323.37 Aligned_cols=252 Identities=19% Similarity=0.280 Sum_probs=220.8
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
+++.++|++|.+.|++|+|+|++++|++|+.||+|+|||+.+++.+.
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--------------------------------- 49 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--------------------------------- 49 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---------------------------------
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---------------------------------
Confidence 45677899999999999999999999999999999999998876544
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVT 598 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~ 598 (969)
.+.+|...|.+++|++ +++|++|+.|++|++||+.+++++..+ +|...|.
T Consensus 50 ----------------------------~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 101 (304)
T 2ynn_A 50 ----------------------------SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101 (304)
T ss_dssp ----------------------------EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred ----------------------------EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEE
Confidence 5667899999999999 899999999999999999999998877 7999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCc-eEE-EEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDR-LVV-DWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~-~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
+++|+| ++.+|++|+.|++|++||++++ .+. .+..|...|.+++|+| ++.+|++|+.|++|++||+.........
T Consensus 102 ~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~- 179 (304)
T 2ynn_A 102 SIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL- 179 (304)
T ss_dssp EEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE-
T ss_pred EEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee-
Confidence 999999 8999999999999999999876 333 4567889999999999 6789999999999999999876543221
Q ss_pred eeecccccCCCCCeEEEEEcCC-CCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 676 VDFQTKKKSSTRKITGFQFSPS-NPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd-~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
...+...+..+.|+|. +..+|++++.|++|++||............|...|.+++|+|++.+|++|+.||+|+
T Consensus 180 ------~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~ 253 (304)
T 2ynn_A 180 ------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253 (304)
T ss_dssp ------ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred ------ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEE
Confidence 1456678999999873 236899999999999999887766666667788899999999999999999999999
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
|||+.+.
T Consensus 254 iWd~~~~ 260 (304)
T 2ynn_A 254 IWNSSTY 260 (304)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 9999874
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=378.36 Aligned_cols=555 Identities=13% Similarity=0.116 Sum_probs=377.0
Q ss_pred EEeeCCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccc
Q 002086 293 LIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRM 372 (969)
Q Consensus 293 ~i~~ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~ 372 (969)
.-|.. +|+.+++. +.|| .+++||+.+++.+ ..+.+|...|.++++..++..+++++.|..+..|....
T Consensus 621 ~~~s~-~~~~l~s~--~~d~-~i~vw~~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--- 688 (1249)
T 3sfz_A 621 ACFSQ-DGQRIASC--GADK-TLQVFKAETGEKL-----LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT--- 688 (1249)
T ss_dssp EEECT-TSSEEEEE--ETTS-CEEEEETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---
T ss_pred EEECC-CCCEEEEE--eCCC-eEEEEECCCCCEE-----EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC---
Confidence 34444 45555443 3545 4789999999874 45679999999999988888888888888887776432
Q ss_pred cccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEeccccc
Q 002086 373 SKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEG 452 (969)
Q Consensus 373 ~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~ 452 (969)
.+....+....+.+.++.|+++... .++.. ...++.+. +|++...+....+.+|.+
T Consensus 689 --~~~~~~~~~~~~~v~~~~~~~~~~~----~~l~s---------g~~d~~v~---------vwd~~~~~~~~~~~~h~~ 744 (1249)
T 3sfz_A 689 --GKLVHTYDEHSEQVNCCHFTNKSNH----LLLAT---------GSNDFFLK---------LWDLNQKECRNTMFGHTN 744 (1249)
T ss_dssp --CCEEEEEECCSSCEEEEEECSSSSC----CEEEE---------EETTSCEE---------EEETTSSSEEEEECCCSS
T ss_pred --CceEEEEcCCCCcEEEEEEecCCCc----eEEEE---------EeCCCeEE---------EEECCCcchhheecCCCC
Confidence 2222233333344455555543211 01111 11222222 446777788889999999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccC-------------cccccccCCCCCccCCCCCCCCCc
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTP-------------IHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~-------------v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
.|++++|+|++++|++|+.||+|++||+.+++....+...... +..+.+.+........
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-------- 816 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA-------- 816 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE--------
T ss_pred CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE--------
Confidence 9999999999999999999999999999998877654322110 0011111100000000
Q ss_pred ccccCCCCCCCCcccccceeeecCC-CceeEe-ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSE-KPFCSF-IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHND 595 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~-k~~~~l-~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~ 595 (969)
......+|.... ..+..+ .+|...|.+++|+| +.++++++.|+.|++||+.++..+..+ +|..
T Consensus 817 -------------~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~ 883 (1249)
T 3sfz_A 817 -------------AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS 883 (1249)
T ss_dssp -------------ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS
T ss_pred -------------cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc
Confidence 001122333322 223333 48999999999999 899999999999999999999988877 8999
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCce------------------------------EE--------EEecCCC
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL------------------------------VV--------DWTDLHE 637 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~------------------------------~~--------~~~~~~~ 637 (969)
.|.+++|+| ++.+|++++.||.|++||+.+.. .. .......
T Consensus 884 ~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1249)
T 3sfz_A 884 WVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA 962 (1249)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred ceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence 999999999 99999999999999999975310 00 0112345
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 638 MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 638 ~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
.+.+++|+|+++++++|+.+|.|++||+.+++.... ...|...|++++|+|++ .++++++.|+.|++||..
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~--------~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS--------GVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEE--------CCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETT
T ss_pred cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeee--------cccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECC
Confidence 699999999999999999999999999998875433 25788999999999998 799999999999999987
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcc-c
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMV-K 796 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i-~ 796 (969)
..... ....+...+.++.|++++ .+++++.||.|++||+.+++. ......+...+.+..++.. -..++ .
T Consensus 1034 ~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~------~~~~~~~~~~v~~~~~s~d--~~~l~s~ 1103 (1249)
T 3sfz_A 1034 TGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI------ERDFTCHQGTVLSCAISSD--ATKFSST 1103 (1249)
T ss_dssp TTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC------CEEEECCSSCCCCEEECSS--SSSCEEE
T ss_pred CCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce------eEEEcccCCcEEEEEECCC--CCEEEEE
Confidence 65443 344677889999999976 678899999999999998543 3333334444443333321 12222 3
Q ss_pred CCCCCccEEEcccccc------cCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCC---------CCCCCCccc
Q 002086 797 GEPPPTPVQTKKHAKR------ISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVP---------SPPEEELSL 861 (969)
Q Consensus 797 G~~~~~~v~~~~~~~~------~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l---------~~pee~l~~ 861 (969)
+.+..+.+|.....+. ........+++|++.++++++.++.+..|...++.....+ ..|...+.+
T Consensus 1104 s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1183 (1249)
T 3sfz_A 1104 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183 (1249)
T ss_dssp CCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCE
T ss_pred cCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEE
Confidence 4567777886554432 1223346779999999999999999999988777665554 456777888
Q ss_pred cccCCCCCCccccCCCccccCCCCCCcccCCCCCCCCCCCCCCCcccccccCCCCCCccccccccccCCCCCCcccccee
Q 002086 862 ISHDPGISESFTSNSSSIRSGDSPSISTASETNSNSYSPRQDDPASISSSTDRNSSSFTNWSSWFDVGSHSSHTVQATAW 941 (969)
Q Consensus 862 is~hP~~~~~~~~s~~~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (969)
+.++|.-.-+++. +..++.=+..+.. . + ..+.....--..+.....
T Consensus 1184 l~fs~dg~~l~s~-~g~v~vwd~~~g~-----~---~-------------------------~~~~~~~~~i~~~~~s~d 1229 (1249)
T 3sfz_A 1184 VCFSPDSKTLVSA-GGYLKWWNVATGD-----S---S-------------------------QTFYTNGTNLKKIHVSPD 1229 (1249)
T ss_dssp EEECTTSSCEEEE-SSSEEEBCSSSCB-----C---C-------------------------CCCCCSSCCCCCCEECSS
T ss_pred EEECCCCCEEEEC-CCeEEEEECCCCc-----e---e-------------------------eeeeccCCcccEEEECCC
Confidence 8898886544443 3455533322111 0 0 000000000112334456
Q ss_pred eEEEEEeecCCEEEEEE
Q 002086 942 GLVIVTATLGGEIKTYQ 958 (969)
Q Consensus 942 g~~~vt~g~dg~~r~~~ 958 (969)
|..|||++.||.|++|+
T Consensus 1230 g~~l~~~~~dg~v~vw~ 1246 (1249)
T 3sfz_A 1230 FRTYVTVDNLGILYILQ 1246 (1249)
T ss_dssp SCCEEEECTTCCEEEEC
T ss_pred CCEEEEecCCcEEEEEe
Confidence 78899999999999997
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=349.00 Aligned_cols=452 Identities=14% Similarity=0.113 Sum_probs=332.2
Q ss_pred eeCCCCcEEEEeeccCCCceeEEEecCCC----ceeeeeehhhccCCCcc-eeeeeccc--ccccccCCCCccccccccc
Q 002086 295 KNLDTGKEFIVNEYSENGMWNKLSDLQTG----KQLTMEEFEKSVGHSPV-VKELMRRE--NVNRINDSAGKFSANSYLS 367 (969)
Q Consensus 295 ~~ld~g~~~vv~~~~~dg~~~~lWd~~tg----k~l~~~E~~~~~GHs~~-V~~l~~~~--~~~~~~t~s~d~~v~~~~~ 367 (969)
|+. +|+.+++.. +..++|||++++ +. ...+.||... |.++++.. +...+++++.|..+..|..
T Consensus 26 ~sp-dg~~l~~~~----~~~v~v~~~~~~~~~~~~-----~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 26 YDP-TTNAIAYPC----GKSAFVRCLDDGDSKVPP-----VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp EET-TTTEEEEEE----TTEEEEEECCSSCCSSCS-----EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred ECC-CCCEEEEec----CCeEEEEECCCCCCcccc-----ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 454 445555543 235789999988 55 3566899999 99999887 8888898888888877764
Q ss_pred cccccc---ccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceee
Q 002086 368 KSLRMS---KRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLC 444 (969)
Q Consensus 368 ~~~~~~---k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~ 444 (969)
...+.. .......+....+....+.|+++...+... . .+......++++. ..+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~---------~~~~~~~~v~~~d---------~~~~~ 153 (615)
T 1pgu_A 96 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV----G---------EGRDNFGVFISWD---------SGNSL 153 (615)
T ss_dssp EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE----E---------CCSSCSEEEEETT---------TCCEE
T ss_pred CCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe----c---------cCCCCccEEEEEE---------CCCcc
Confidence 311000 111112233334455666666665543221 0 1111123444443 34467
Q ss_pred eEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 445 QEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
..+.+|.+.|++++|+|+++ +|++++.|+.|++||+.+++.+.
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~------------------------------------ 197 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA------------------------------------ 197 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE------------------------------------
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceee------------------------------------
Confidence 78889999999999999998 89999999999999998776654
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCC---CEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe-----ec
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLD---DVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF-----AH 593 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~---~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~-----~h 593 (969)
.+.+|.. .|.+++|+| +++|++++.|+.|++||+.+++.+..+ .|
T Consensus 198 -------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 252 (615)
T 1pgu_A 198 -------------------------SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 252 (615)
T ss_dssp -------------------------EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC
T ss_pred -------------------------eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc
Confidence 4556888 999999998 478999999999999999999999988 89
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC-----CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH-----EMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~-----~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
...|.+++|+ ++.+|++++.|+.|++||+.+++.+...... ..+.++.|. ++.++++++.+|.|++||+.++
T Consensus 253 ~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 253 QGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp CSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE
T ss_pred CCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC
Confidence 9999999999 7899999999999999999998877655544 678888886 8899999999999999999876
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
+.... ...|...|.+++| |+ +++++.|+.|++|+.. .+. ..|...|.+++| +++.+|++++
T Consensus 330 ~~~~~--------~~~~~~~v~~~~~-~~----l~~~~~dg~i~~w~~~----~~~-~~~~~~v~~~~~-~~~~~l~~~~ 390 (615)
T 1pgu_A 330 EVLKT--------ISGHNKGITALTV-NP----LISGSYDGRIMEWSSS----SMH-QDHSNLIVSLDN-SKAQEYSSIS 390 (615)
T ss_dssp EEEEE--------ECCCSSCEEEEET-TT----TEEEETTSCEEETTTT----EEE-CCCCSCEEEEEC-CSTTCCEEEE
T ss_pred cEEEE--------EeCCCCCEEEEEe-cC----cEEECCCCeEEEEEch----hhc-CcccCceEEEEE-CCCcEEEEEe
Confidence 54332 2578899999999 85 9999999999999987 233 667888999999 6688999999
Q ss_pred CCCcEEEEEcCCCCccC----------------------------CCceeEEecccCCceeeeeeEEeecCCCcccC-C-
Q 002086 749 EDSQVYVWKREEHRNAS----------------------------TGKRAIITTRNHEHFQCKDVSVAIPWPGMVKG-E- 798 (969)
Q Consensus 749 ~Dg~I~IWdl~t~~~~~----------------------------t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G-~- 798 (969)
.|+.|++|++.+.+... .++.+.... ......+..+. -..++.+ .
T Consensus 391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~l~~~~~~ 465 (615)
T 1pgu_A 391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS----QNYVAVGLEE 465 (615)
T ss_dssp TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC----SSEEEEEETT
T ss_pred CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc----CCEEEEeecC
Confidence 99999999987643211 111111111 11222222222 1222222 3
Q ss_pred CCCccEEEccccc-------ccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCC-CCCCccccccCC
Q 002086 799 PPPTPVQTKKHAK-------RISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSP-PEEELSLISHDP 866 (969)
Q Consensus 799 ~~~~~v~~~~~~~-------~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~-pee~l~~is~hP 866 (969)
+....+|...... ..........++|++.++++++.++.+..|...++.....+.. |...+.++.++|
T Consensus 466 d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp 541 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 541 (615)
T ss_dssp TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred CCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcC
Confidence 5666666554322 1233445678899999999999999999999988888888777 999999999999
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=338.32 Aligned_cols=247 Identities=23% Similarity=0.410 Sum_probs=217.2
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
++.+++++|.+.|++++|+|++++|++|+.|++|+|||+.+++.+.
T Consensus 141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~---------------------------------- 186 (410)
T 1vyh_C 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR---------------------------------- 186 (410)
T ss_dssp CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE----------------------------------
T ss_pred cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----------------------------------
Confidence 3445688999999999999999999999999999999998765543
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~s 599 (969)
.+.+|...|.+++|+| +++|++|+.|++|++||+.++.++..+ +|...|.+
T Consensus 187 ---------------------------~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~ 239 (410)
T 1vyh_C 187 ---------------------------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239 (410)
T ss_dssp ---------------------------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ---------------------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEE
Confidence 4567999999999999 789999999999999999999998887 79999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccC--------------------CCEEEEEeCCC
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPD--------------------GQNALIGSHKG 658 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspd--------------------g~~Lasgs~dg 658 (969)
+.|+| ++.+|++|+.|++|++||+.++.... +..|...|.+++|+|+ +.+|++|+.|+
T Consensus 240 ~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 240 VRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 99999 99999999999999999999887654 5577889999999996 67899999999
Q ss_pred cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe
Q 002086 659 SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN 738 (969)
Q Consensus 659 ~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs 738 (969)
.|++||+.++...... .+|...|.+++|+|++ .+|++++.|+.|++||............|...|++++|+
T Consensus 319 ~i~iwd~~~~~~~~~~--------~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~ 389 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTL--------VGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389 (410)
T ss_dssp EEEEEETTTTEEEEEE--------ECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC
T ss_pred eEEEEECCCCceEEEE--------ECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc
Confidence 9999999988765432 5688999999999988 799999999999999976654444445567789999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcC
Q 002086 739 ADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 739 pdg~~LaSgs~Dg~I~IWdl~ 759 (969)
|++.+|++|+.||+|+||+++
T Consensus 390 ~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 390 KTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSSSCEEEEETTSEEEEEC--
T ss_pred CCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999863
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=326.04 Aligned_cols=289 Identities=20% Similarity=0.345 Sum_probs=238.8
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
++...+|++|.+.|++++|+||+++|+||+.||+|+|||+.+++.+..+..+...+..+.+.+........+..
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------ 118 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD------ 118 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETT------
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCC------
Confidence 45677899999999999999999999999999999999999999888777766666555555443222111110
Q ss_pred cccCCCCCCCCcccccceeeecCC-----CceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSE-----KPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHN 594 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~-----k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~ 594 (969)
....+|.... .....+.+|.+.|.++.|+++..|++++.|++|++||+.+++++..+ +|.
T Consensus 119 --------------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~ 184 (340)
T 1got_B 119 --------------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184 (340)
T ss_dssp --------------CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred --------------CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCC
Confidence 0112233221 23456889999999999999778999999999999999999998887 799
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
..|.+++|+| ++.+|++|+.|++|++||++++.... +..|...|.+++|+|++++|++|+.||+|++||++..+....
T Consensus 185 ~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~ 263 (340)
T 1got_B 185 GDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263 (340)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 9999999999 89999999999999999999887654 556788999999999999999999999999999998765433
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
.. ...+...|++++|+|++ .+|++|+.|+.|++||............|...|.+++|+|+|.+|++|+.||.|
T Consensus 264 ~~------~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 264 YS------HDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp EC------CTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred Ec------cCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 21 13345679999999998 899999999999999987665555556678899999999999999999999999
Q ss_pred EEEE
Q 002086 754 YVWK 757 (969)
Q Consensus 754 ~IWd 757 (969)
+|||
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=336.07 Aligned_cols=248 Identities=22% Similarity=0.409 Sum_probs=222.3
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
...|.+|.++|++++|+|++.+|++|+.||+|+|||+.+++...
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~------------------------------------ 144 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER------------------------------------ 144 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE------------------------------------
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE------------------------------------
Confidence 45688999999999999999999999999999999998754432
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
.+.+|.+.|.+++|++ +.+|++|+.|++|+|||+.+++++..+ +|...|.+++
T Consensus 145 -------------------------~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~ 199 (410)
T 1vyh_C 145 -------------------------TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 199 (410)
T ss_dssp -------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEE
T ss_pred -------------------------EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEE
Confidence 6778999999999999 889999999999999999999998877 8999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT 680 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~ 680 (969)
|+| ++++|++|+.|++|++||+.++..+. +..|...|.++.|+|++.+|++|+.|+.|++||+.+++.....
T Consensus 200 ~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~------ 272 (410)
T 1vyh_C 200 IMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL------ 272 (410)
T ss_dssp ECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE------
T ss_pred EeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEe------
Confidence 999 89999999999999999999887654 5667889999999999999999999999999999988754332
Q ss_pred cccCCCCCeEEEEEcCCC-------------------CceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC
Q 002086 681 KKKSSTRKITGFQFSPSN-------------------PSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG 741 (969)
Q Consensus 681 ~~~~h~~~It~l~fspd~-------------------~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg 741 (969)
..|...|.+++|+|++ +.+|++|+.|+.|++||............|...|.+++|+|+|
T Consensus 273 --~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g 350 (410)
T 1vyh_C 273 --REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350 (410)
T ss_dssp --CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred --cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCC
Confidence 5788999999999963 3589999999999999988776666666778889999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCC
Q 002086 742 KYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 742 ~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++|++|+.||.|+|||+.++
T Consensus 351 ~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 351 KFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp SCEEEEETTTEEEEECCTTS
T ss_pred CEEEEEeCCCeEEEEECCCC
Confidence 99999999999999999874
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=326.61 Aligned_cols=247 Identities=20% Similarity=0.281 Sum_probs=207.8
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.|...|++++|+|++ .|++|+.||+|+|||+.+++.+...
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~--------------------------------------- 119 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVS--------------------------------------- 119 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEE---------------------------------------
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEe---------------------------------------
Confidence 478899999999985 6889999999999999876543321
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMD 606 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~ 606 (969)
...+.+|.+.|++|+|+| +++|++|+.|++|+|||+.+++++..+ +|...|++++|++..
T Consensus 120 ------------------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 120 ------------------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp ------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred ------------------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence 114568999999999999 899999999999999999999999888 799999999999944
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEEec---CCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 607 DDYFISGSLDAKVRIWSISDRLVVDWTD---LHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
..+|++|+.|++|++||+++++....+. +...+.+++|+|+ +++|++|+.||.|+|||+++++.....
T Consensus 182 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-------- 253 (344)
T 4gqb_B 182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-------- 253 (344)
T ss_dssp TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--------
T ss_pred CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--------
Confidence 4689999999999999999987665443 4457999999995 568899999999999999988764332
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGK-YIISASEDSQVYVWKREEH 761 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~-~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+|...|++++|+|++..+|++++.|++|+|||..... .+....|...|++++|+|+++ +|++|+.|++|++|++.+.
T Consensus 254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 67899999999999987789999999999999976543 344566788999999999986 6779999999999999874
Q ss_pred C
Q 002086 762 R 762 (969)
Q Consensus 762 ~ 762 (969)
.
T Consensus 333 ~ 333 (344)
T 4gqb_B 333 P 333 (344)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=320.58 Aligned_cols=251 Identities=24% Similarity=0.390 Sum_probs=218.6
Q ss_pred eeeeEecccccCEEEEEEeCC----CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 442 HLCQEIQAHEGSIWTIKFSLD----ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpD----g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
.+.+.+++|.+.|++|+|+|+ +.+|+||+.|++|+||++.+++...
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~------------------------------ 72 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL------------------------------ 72 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEE------------------------------
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeee------------------------------
Confidence 345677899999999999984 6799999999999999987654321
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCC
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHND 595 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~ 595 (969)
...+.+|...|.+++|++ +.++++++.|++|++||+.+++++..+ .|..
T Consensus 73 -----------------------------~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~ 123 (321)
T 3ow8_A 73 -----------------------------QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV 123 (321)
T ss_dssp -----------------------------EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred -----------------------------eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc
Confidence 125778999999999999 789999999999999999999998877 6788
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
.+.+++|+| ++.+|++++.||.|++||+.+++.. .+..+...|.+++|+|++++|++|+.||.|++||+.+++.....
T Consensus 124 ~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~ 202 (321)
T 3ow8_A 124 DAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202 (321)
T ss_dssp CCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred cEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 999999999 9999999999999999999987655 45566788999999999999999999999999999988765432
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
..|...|.+++|+|++ .+|++++.|+.|++||............|...|.+++|+|++.+|++++.|+.|+
T Consensus 203 --------~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 203 --------EGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp --------CCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred --------cccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 5788899999999988 7999999999999999877665555666788899999999999999999999999
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
|||+.++
T Consensus 274 iwd~~~~ 280 (321)
T 3ow8_A 274 VWDVGTR 280 (321)
T ss_dssp EEETTTT
T ss_pred EEeCCCC
Confidence 9999873
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=329.85 Aligned_cols=304 Identities=20% Similarity=0.347 Sum_probs=244.1
Q ss_pred cccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 436 KDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
++...+.+.++|++|.+.|++++|+|++++|+||+.|++|+|||+.+++.+..+..+...+..+.+.+........+...
T Consensus 51 ~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp CCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred cccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 34456678889999999999999999999999999999999999999999888888777776666655543332222111
Q ss_pred CCCcccccCCCCCCCCcccccceeeec--------CCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCC
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSL--------SEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETK 585 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~ 585 (969)
. ..+|.+ .......+.+|.+.|.++.|.| +..|++|+.|++|++||+.++
T Consensus 131 ~--------------------v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~ 190 (380)
T 3iz6_a 131 A--------------------CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG 190 (380)
T ss_dssp C--------------------CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC
T ss_pred c--------------------EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC
Confidence 1 111211 1123346789999999999998 468999999999999999999
Q ss_pred cEEEEe------ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-c-eEEEEecCCCCEEEEEEccCCCEEEEEeCC
Q 002086 586 SCLKLF------AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-R-LVVDWTDLHEMVTAACYTPDGQNALIGSHK 657 (969)
Q Consensus 586 ~~i~~~------~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~-~~~~~~~~~~~V~sv~fspdg~~Lasgs~d 657 (969)
+++..+ +|...|.+++|++.++++|++|+.|++|++||++. + .+..+..|...|.+++|+|++++|++|+.|
T Consensus 191 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 270 (380)
T 3iz6_a 191 QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270 (380)
T ss_dssp CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS
T ss_pred cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC
Confidence 998876 58899999999886889999999999999999974 3 345567788999999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe----ecCCCCeE
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG----FRNTSSQI 733 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~----~~~~~~V~ 733 (969)
|+|++||+++++......... .....+...|++++|+|++ .+|++|+.|+.|++||.......... ..|...|.
T Consensus 271 ~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~ 348 (380)
T 3iz6_a 271 GTCRLFDMRTGHQLQVYNREP-DRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRIS 348 (380)
T ss_dssp SCEEEEETTTTEEEEEECCCC-SSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCC
T ss_pred CeEEEEECCCCcEEEEecccc-cccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceE
Confidence 999999999987655432211 1112234468999999998 89999999999999997655444333 45778899
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 734 SAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 734 sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+++|+|||.+|++|+.||+|+||++...
T Consensus 349 ~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 349 CLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999999999999999999999999874
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=318.98 Aligned_cols=243 Identities=17% Similarity=0.342 Sum_probs=218.4
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.+.+|...|.+++|++++.+|++|+.|++|+|||+.+++.+.
T Consensus 75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~-------------------------------------- 116 (321)
T 3ow8_A 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK-------------------------------------- 116 (321)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------------------------
T ss_pred eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE--------------------------------------
Confidence 477999999999999999999999999999999999877654
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEe
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFN 603 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fs 603 (969)
.+..|...+.+++|+| +++|++|+.|+.|++||+.+++....+ .|...|.+++|+
T Consensus 117 -----------------------~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~s 173 (321)
T 3ow8_A 117 -----------------------SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS 173 (321)
T ss_dssp -----------------------EEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEEC
T ss_pred -----------------------EEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEEC
Confidence 3455777788999999 899999999999999999999988776 688899999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEEEE-ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 604 PMDDDYFISGSLDAKVRIWSISDRLVVDW-TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 604 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
| ++.+|++|+.||.|++||+++++.+.. ..|...|.+++|+|++++|++|+.|+.|++||++..+.... .
T Consensus 174 p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~--------~ 244 (321)
T 3ow8_A 174 P-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT--------L 244 (321)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE--------E
T ss_pred C-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE--------E
Confidence 9 999999999999999999999887654 45778899999999999999999999999999998775433 2
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.+|...|.+++|+|++ .+|++++.|++|++||..+.........|...|.+++|+|++++|++++.||.|+|||+.
T Consensus 245 ~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 6788999999999988 799999999999999988777666666788899999999999999999999999999973
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=319.78 Aligned_cols=290 Identities=22% Similarity=0.328 Sum_probs=235.8
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+..++|++|.+.|++|+|+|++++||||+.||+|+|||..+++....+..+...+..+.+.+........+....
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~---- 129 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK---- 129 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSE----
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCC----
Confidence 3567889999999999999999999999999999999999998887776666555555555544332222111100
Q ss_pred cccCCCCCCCCcccccceeeec-------CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-
Q 002086 521 KKKKGKHSSPDYVHVPETVFSL-------SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF- 591 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~-------~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~- 591 (969)
..+|.. .......+.+|...|.++.|++ +..|++++.|++|++||+.+++++..+
T Consensus 130 ----------------i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 130 ----------------CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp ----------------EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ----------------EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 011111 1123456788999999999999 789999999999999999999998887
Q ss_pred ecCCCeEEEEEecC-CCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 592 AHNDYVTCIQFNPM-DDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 592 ~h~~~V~sv~fsp~-~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
+|...|.+++|+|. ++++|++|+.||+|++||+++++.+. +..|...|.+++|+|++.+|++|+.|++|++||++..+
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~ 273 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 79999999999883 35799999999999999999988665 45677899999999999999999999999999999876
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
...... ...+...+.+++|+|++ .+|++++.|+.|++||..+.........|...|.+++|+|||++|++|+.
T Consensus 274 ~~~~~~------~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 274 EVAIYS------KESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp EEEEEC------CTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEEEc------CCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 543221 12344578999999988 79999999999999998766555555677889999999999999999999
Q ss_pred CCcEEEEE
Q 002086 750 DSQVYVWK 757 (969)
Q Consensus 750 Dg~I~IWd 757 (969)
||+|+||+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-34 Score=315.49 Aligned_cols=303 Identities=18% Similarity=0.273 Sum_probs=244.9
Q ss_pred cceeeeEecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.+.+..+|.+|.+.|++|+|+|++ ++|+||+.|++|++|++......
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~-------------------------------- 53 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-------------------------------- 53 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE--------------------------------
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc--------------------------------
Confidence 356778899999999999999965 89999999999999998642110
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
...++..+.+|...|.+++|++ +.+|++|+.|++|+|||+.+++++..+ +|...
T Consensus 54 ------------------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~ 109 (319)
T 3frx_A 54 ------------------------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109 (319)
T ss_dssp ------------------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred ------------------------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc
Confidence 0123447889999999999999 899999999999999999999998877 89999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccC------CCEEEEEeCCCcEEEEEcCCCce
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPD------GQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspd------g~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
|.+++|+| ++.+|++|+.|++|++||++...+..+..|...|.++.|.|. +..|++++.|+.|++||+...+.
T Consensus 110 v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 188 (319)
T 3frx_A 110 VMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188 (319)
T ss_dssp EEEEEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence 99999999 999999999999999999998888888899999999999995 44899999999999999998765
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
... ..+|...|.+++|+|++ .+|++++.|+.|++||........... ....|.+++|+|++.+|++++.+
T Consensus 189 ~~~--------~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~ 258 (319)
T 3frx_A 189 EAD--------FIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATAT 258 (319)
T ss_dssp EEE--------ECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEETT
T ss_pred hee--------ecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcCC
Confidence 432 26789999999999988 799999999999999987765544433 45679999999999999998855
Q ss_pred CcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcc
Q 002086 751 SQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSP 830 (969)
Q Consensus 751 g~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~ 830 (969)
.|++|+++.. ............+ .+.........++||++.+++
T Consensus 259 -~i~v~~~~~~------~~~~~~~~~~~~~-----------------------------~~~~~~~v~~~~~spdg~~l~ 302 (319)
T 3frx_A 259 -GIKVFSLDPQ------YLVDDLRPEFAGY-----------------------------SKAAEPHAVSLAWSADGQTLF 302 (319)
T ss_dssp -EEEEEEETTE------EEEEEECCCCTTC-----------------------------CGGGCCCEEEEEECTTSSEEE
T ss_pred -CcEEEEeCcC------eeeeccCcccccc-----------------------------ccCcCcceeEEEECCCCCEEE
Confidence 5999999862 1111111000000 000111223467899999999
Q ss_pred ccCCCCccccCCCCC
Q 002086 831 AGHSRRLLPPLPKKT 845 (969)
Q Consensus 831 ~~~~~~~L~~~~~~s 845 (969)
+++.++.+..|...+
T Consensus 303 sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 303 AGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEETTSCEEEEEEEE
T ss_pred EeecCceEEEEEEee
Confidence 999999999996543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=311.39 Aligned_cols=292 Identities=20% Similarity=0.319 Sum_probs=235.5
Q ss_pred hhhccCCCcceeeeeccc-ccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccch
Q 002086 331 FEKSVGHSPVVKELMRRE-NVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQ 409 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~-~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~ 409 (969)
...+.||...|.+|++.. ++..+++++.|..+..|.. .....
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~-----~~~~~-------------------------------- 52 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-----TGDDQ-------------------------------- 52 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEE-----EEETT--------------------------------
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecC-----CCCCc--------------------------------
Confidence 345689999999999754 5577888888987766641 10000
Q ss_pred HHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEee
Q 002086 410 REQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMS 489 (969)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~ 489 (969)
.....+..|++|...|++++|+|+|++|++|+.|++|+|||+.+++.+.
T Consensus 53 -----------------------------~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~-- 101 (319)
T 3frx_A 53 -----------------------------KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ-- 101 (319)
T ss_dssp -----------------------------EEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--
T ss_pred -----------------------------cccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE--
Confidence 0011245678999999999999999999999999999999998876644
Q ss_pred cCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE
Q 002086 490 EGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL 568 (969)
Q Consensus 490 ~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L 568 (969)
.+.+|...|.+++|++ +.+|
T Consensus 102 -----------------------------------------------------------~~~~h~~~v~~~~~~~~~~~l 122 (319)
T 3frx_A 102 -----------------------------------------------------------RFVGHKSDVMSVDIDKKASMI 122 (319)
T ss_dssp -----------------------------------------------------------EEECCSSCEEEEEECTTSCEE
T ss_pred -----------------------------------------------------------EEccCCCcEEEEEEcCCCCEE
Confidence 5678999999999999 7899
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecC-----CCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEE
Q 002086 569 LSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM-----DDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAA 642 (969)
Q Consensus 569 ~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~-----~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv 642 (969)
++|+.|++|++||+.........+|...|.++.|.|. ++.+|++++.|+.|++||+++.+.. .+..|...|.++
T Consensus 123 ~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~ 202 (319)
T 3frx_A 123 ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202 (319)
T ss_dssp EEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEE
T ss_pred EEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEE
Confidence 9999999999999986555555589999999999983 2348999999999999999988755 456788999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE
Q 002086 643 CYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK 722 (969)
Q Consensus 643 ~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~ 722 (969)
+|+|++++|++|+.||.|+|||+.+.+..... .+...|.+++|+|++ .++++++ +..|++|+.......
T Consensus 203 ~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~v~~~~~sp~~-~~la~~~-~~~i~v~~~~~~~~~ 271 (319)
T 3frx_A 203 TASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---------SAQDEVFSLAFSPNR-YWLAAAT-ATGIKVFSLDPQYLV 271 (319)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTTEEEEEE---------ECCSCEEEEEECSSS-SEEEEEE-TTEEEEEEETTEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---------cCCCcEEEEEEcCCC-CEEEEEc-CCCcEEEEeCcCeee
Confidence 99999999999999999999999988765432 134679999999987 5666655 556999996653322
Q ss_pred EEe--------ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 723 FRG--------FRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 723 ~~~--------~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
... ..+...+.+++|+|||++|++|+.||.|+|||+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 272 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred eccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 221 12345688999999999999999999999999976
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=320.88 Aligned_cols=310 Identities=17% Similarity=0.251 Sum_probs=231.4
Q ss_pred eEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeec
Q 002086 315 NKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVK 394 (969)
Q Consensus 315 ~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~ 394 (969)
...|++..... .+|...|++|++..++..+++++.+. ...|.+.++.+.....
T Consensus 28 ~~~w~~p~~~p---------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~~v~~~~~~~~----------------- 80 (357)
T 4g56_B 28 GSAWGRPVTAP---------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGGSIWVFKDPEG----------------- 80 (357)
T ss_dssp ---------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCEEEEEESSCC------------------
T ss_pred ccccCCCCCCc---------ccccCCEEEEEECCCCCEEEEEcCCC-CccccCeEEEEECCCC-----------------
Confidence 35787765543 57999999999999999999987775 3455433211110000
Q ss_pred CCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCc
Q 002086 395 GDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRV 474 (969)
Q Consensus 395 gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~Dgt 474 (969)
. ....+.....+|.+.|++++|+|+++ +++++.||+
T Consensus 81 -~------------------------------------------~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 81 -A------------------------------------------PNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp ---------------------------------------------CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred -C------------------------------------------cceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 0 00011223457999999999999986 556788999
Q ss_pred EEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCC
Q 002086 475 IHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHL 554 (969)
Q Consensus 475 VrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~ 554 (969)
|+|||+.+++..... .....+|.
T Consensus 117 v~lWd~~~~~~~~~~---------------------------------------------------------~~~~~~h~ 139 (357)
T 4g56_B 117 VELWEILEKESLLVN---------------------------------------------------------KFAKYEHD 139 (357)
T ss_dssp EEEC--------CCC---------------------------------------------------------CEEECCCS
T ss_pred EEEeeccccceeEEE---------------------------------------------------------eeccCCCC
Confidence 999999876543210 11456799
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
+.|++++|+| +++|++|+.|++|++||+.+++++..+ +|...|++++|++....+|++++.||+|++||+++++....
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee
Confidence 9999999999 899999999999999999999999887 79999999999994446899999999999999998875543
Q ss_pred ---ecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 633 ---TDLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 633 ---~~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
..+...+.+++|+|+ +.+|++|+.|+.|++||+++++..... ..|...|++++|+|++..+|++++.|
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~--------~~~~~~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS--------AVHSQNITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE--------CCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE--------eccceeEEEEEEcCCCCCEEEEEeCC
Confidence 335577999999997 468889999999999999988754332 57888999999999987789999999
Q ss_pred CcEEEEeCCcceEEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCC
Q 002086 709 SRIRILDGLDIVHKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 709 g~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++|+|||...... +....|...|++++|+| |+.+|++|+.||+|++|++.+.
T Consensus 292 ~~i~iwd~~~~~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 292 CTVAVLDADFSEV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SCEEEECTTSCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CEEEEEECCCCcE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999775433 34456888999999998 8999999999999999999763
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=373.00 Aligned_cols=530 Identities=14% Similarity=0.121 Sum_probs=364.4
Q ss_pred cCCcEEEEeeCCCCcEEE----------EeeccCCCcee---------EEEecCCCceeeeeehhhccCCCcceeeeecc
Q 002086 287 RLGAFFLIKNLDTGKEFI----------VNEYSENGMWN---------KLSDLQTGKQLTMEEFEKSVGHSPVVKELMRR 347 (969)
Q Consensus 287 ~~~~~~~i~~ld~g~~~v----------v~~~~~dg~~~---------~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~ 347 (969)
+.++.++|||+.+|+.+. ...++.||.++ ++||+.+|+.+ ..+.+|...|.++.+.
T Consensus 634 ~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~-----~~~~~~~~~v~~~~~~ 708 (1249)
T 3sfz_A 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV-----HTYDEHSEQVNCCHFT 708 (1249)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-----EEEECCSSCEEEEEEC
T ss_pred eCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE-----EEEcCCCCcEEEEEEe
Confidence 467889999988886643 23355665544 89999999874 4567999999999976
Q ss_pred c--ccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCccc-----chHHH--------
Q 002086 348 E--NVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLG-----DQREQ-------- 412 (969)
Q Consensus 348 ~--~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~-----~~~~~-------- 412 (969)
. +...+++++.|..+..|.... ......+..+.+....+.|+++...+.....-+ +....
T Consensus 709 ~~~~~~~l~sg~~d~~v~vwd~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 783 (1249)
T 3sfz_A 709 NKSNHLLLATGSNDFFLKLWDLNQ-----KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783 (1249)
T ss_dssp SSSSCCEEEEEETTSCEEEEETTS-----SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEEC
T ss_pred cCCCceEEEEEeCCCeEEEEECCC-----cchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecc
Confidence 5 555688888888887776432 222222333334445555555543322210000 00000
Q ss_pred -------HH-Hh---------hccccCcceEEEccCCCcccccccceeeeEec-ccccCEEEEEEeCCCCEEEEEeCCCc
Q 002086 413 -------KE-QK---------QNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQ-AHEGSIWTIKFSLDARFLASAGEDRV 474 (969)
Q Consensus 413 -------~~-~~---------~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~-gH~~~I~~l~fSpDg~~LaTgs~Dgt 474 (969)
.. .. ....++...+........++++........+. +|.+.|.+++|+|+++++++++.|+.
T Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 863 (1249)
T 3sfz_A 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC 863 (1249)
T ss_dssp CCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSC
T ss_pred cccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence 00 00 00011111222222223345666666666665 89999999999999999999999999
Q ss_pred EEEEecccceEEEeecCCccCcccccccCCCCCccCC---CCCCCCCcccccCCCCCCCC------cccc----------
Q 002086 475 IHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLD---GSSPNPPPEKKKKGKHSSPD------YVHV---------- 535 (969)
Q Consensus 475 VrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~------~~~~---------- 535 (969)
|++||+.++..+..+.++...+..+.+.+........ +....+.............. +...
T Consensus 864 v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1249)
T 3sfz_A 864 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI 943 (1249)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESS
T ss_pred EEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCC
Confidence 9999999999999888888887777776654322221 11111111100000000000 0000
Q ss_pred -cceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEE
Q 002086 536 -PETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFIS 612 (969)
Q Consensus 536 -~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~s 612 (969)
....+.... ......+...|.+++|+| +.++++|+.||.|++||+.+++....+ +|...|++++|+| ++.+|++
T Consensus 944 ~~~~~~~~~~--~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s 1020 (1249)
T 3sfz_A 944 RGLQLIAGKT--GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLIS 1020 (1249)
T ss_dssp SSEEEEEESS--CCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEE
T ss_pred cceEEEecCc--ceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEE
Confidence 000000000 111223456799999999 899999999999999999999988776 7999999999999 9999999
Q ss_pred EECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEE
Q 002086 613 GSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF 692 (969)
Q Consensus 613 gs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l 692 (969)
++.||.|++||+.++.......+...|.+++|+|++ .+++++.||.|++||+.+++..... ..|...|+++
T Consensus 1021 ~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~--------~~~~~~v~~~ 1091 (1249)
T 3sfz_A 1021 SSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDF--------TCHQGTVLSC 1091 (1249)
T ss_dssp ECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEE--------ECCSSCCCCE
T ss_pred EcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEE--------cccCCcEEEE
Confidence 999999999999999998888899999999999965 6788999999999999988764332 5688899999
Q ss_pred EEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEE
Q 002086 693 QFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAII 772 (969)
Q Consensus 693 ~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~ 772 (969)
+|+|++ .++++++.|++|++||............|...|++++|+|+|++|++|+.||.|++||+.+++...+......
T Consensus 1092 ~~s~d~-~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~ 1170 (1249)
T 3sfz_A 1092 AISSDA-TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1170 (1249)
T ss_dssp EECSSS-SSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-
T ss_pred EECCCC-CEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccc
Confidence 999998 7899999999999999765544444455778899999999999999999999999999998654432210000
Q ss_pred ecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCC
Q 002086 773 TTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVP 852 (969)
Q Consensus 773 ~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l 852 (969)
.. ............+++|++.++++++ +.+..|...++......
T Consensus 1171 ~~----------------------------------~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~ 1214 (1249)
T 3sfz_A 1171 EE----------------------------------GTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTF 1214 (1249)
T ss_dssp ----------------------------------------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCC
T ss_pred cc----------------------------------cccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeee
Confidence 00 0000112233556899999988876 78999998888888887
Q ss_pred CCCCCCccccccCCCCCCccccC
Q 002086 853 SPPEEELSLISHDPGISESFTSN 875 (969)
Q Consensus 853 ~~pee~l~~is~hP~~~~~~~~s 875 (969)
..+...+.++.+.|...-+++.+
T Consensus 1215 ~~~~~~i~~~~~s~dg~~l~~~~ 1237 (1249)
T 3sfz_A 1215 YTNGTNLKKIHVSPDFRTYVTVD 1237 (1249)
T ss_dssp CCSSCCCCCCEECSSSCCEEEEC
T ss_pred eccCCcccEEEECCCCCEEEEec
Confidence 78888888999888866555543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=310.53 Aligned_cols=257 Identities=19% Similarity=0.321 Sum_probs=214.1
Q ss_pred cceeeeEeccccc-CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 440 ALHLCQEIQAHEG-SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 440 ~~~l~~~L~gH~~-~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
.++++++|.+|.+ .|++|+|+|+|++||||+.|++|+|||+.++.....
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~------------------------------ 53 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK------------------------------ 53 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE------------------------------
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee------------------------------
Confidence 3567888999998 999999999999999999999999999887653321
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc--EEEEe-ecC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS--CLKLF-AHN 594 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~--~i~~~-~h~ 594 (969)
.....+|...|.+++|+| +++|++|+.|++|+|||+..+. ++..+ +|.
T Consensus 54 ----------------------------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~ 105 (345)
T 3fm0_A 54 ----------------------------SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE 105 (345)
T ss_dssp ----------------------------EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS
T ss_pred ----------------------------eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC
Confidence 012357999999999999 8999999999999999998774 44555 799
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce----EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL----VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
..|.+++|+| ++++|++|+.|++|++||+..+. +..+..|...|.+++|+|++++|++|+.|+.|++||+.....
T Consensus 106 ~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~ 184 (345)
T 3fm0_A 106 NEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184 (345)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE
T ss_pred CCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE
Confidence 9999999999 99999999999999999998753 234556788999999999999999999999999999987754
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---------------eEEEEee-cCCCCeEE
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---------------VHKFRGF-RNTSSQIS 734 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---------------~~~~~~~-~~~~~V~s 734 (969)
.... ...+|...|.+++|+|++ .+|++++.|++|+||+.... ....... .|...|.+
T Consensus 185 ~~~~------~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 257 (345)
T 3fm0_A 185 VCCA------TLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYD 257 (345)
T ss_dssp EEEE------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEE
T ss_pred EEEE------EecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEE
Confidence 3222 226789999999999988 89999999999999984210 1111111 26678999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 735 AAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 735 l~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
++|+|++.+|++++.|+.|++|++....
T Consensus 258 v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 258 IAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp EEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred EEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 9999999999999999999999998643
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-33 Score=307.27 Aligned_cols=253 Identities=21% Similarity=0.311 Sum_probs=211.3
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
++.+...+..+.+|...|.+++|+|++++|++|+.|++|+|||+.+++.+.
T Consensus 41 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~----------------------------- 91 (304)
T 2ynn_A 41 NYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV----------------------------- 91 (304)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-----------------------------
T ss_pred ECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE-----------------------------
Confidence 333444556678899999999999999999999999999999998776543
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE-EEEe-ec
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC-LKLF-AH 593 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~-i~~~-~h 593 (969)
.+.+|.+.|.+++|+| +.+|++|+.|++|++||+.++.. ...+ +|
T Consensus 92 --------------------------------~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h 139 (304)
T 2ynn_A 92 --------------------------------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (304)
T ss_dssp --------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC
T ss_pred --------------------------------EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc
Confidence 5678999999999999 78999999999999999998854 4444 89
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EE-ecCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEEcCCCc
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DW-TDLHEMVTAACYTP--DGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~-~~~~~~V~sv~fsp--dg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
...|.+++|+|.++.+|++|+.|++|++||+...... .. ..+...+..+.|+| ++.+|++|+.|++|++||+++++
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence 9999999999966789999999999999999876432 22 34557899999987 67899999999999999999887
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCC--EEEEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGK--YIISA 747 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~--~LaSg 747 (969)
..... .+|...|.+++|+|++ .+|++++.|++|++||..+.........+...+.+++|+|++. +|++|
T Consensus 220 ~~~~~--------~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 220 CVATL--------EGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290 (304)
T ss_dssp EEEEE--------ECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEE
T ss_pred cceee--------CCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEe
Confidence 65432 6788999999999988 7999999999999999877655555556677899999999875 57777
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
+.| .+.+|++.+
T Consensus 291 ~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 291 FDN-GFTVLSLGN 302 (304)
T ss_dssp ETT-EEEEEECC-
T ss_pred cCC-ceEEEEecc
Confidence 654 578888865
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=311.51 Aligned_cols=295 Identities=16% Similarity=0.308 Sum_probs=231.8
Q ss_pred ehhhccCCCcceeeeec-----cc-ccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCC
Q 002086 330 EFEKSVGHSPVVKELMR-----RE-NVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPN 403 (969)
Q Consensus 330 E~~~~~GHs~~V~~l~~-----~~-~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~ 403 (969)
....+.||...|.++.+ .. +...+++++.|..+..|.. ......
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~-----~~~~~~------------------------- 62 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL-----YEEEQN------------------------- 62 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEE-----CSSCCS-------------------------
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEEC-----CcCCcc-------------------------
Confidence 34567899999999986 33 6677888888887766641 111000
Q ss_pred CcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccc
Q 002086 404 PLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQEC 483 (969)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg 483 (969)
. ........+.+|.+.|++++|+|++.+|++|+.|++|+|||+.++
T Consensus 63 ----------------~------------------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~ 108 (343)
T 2xzm_R 63 ----------------G------------------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG 108 (343)
T ss_dssp ----------------S------------------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS
T ss_pred ----------------c------------------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 0 001223457899999999999999999999999999999999876
Q ss_pred eEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEec
Q 002086 484 EVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS 563 (969)
Q Consensus 484 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs 563 (969)
+.+. .+.+|...|.+++|+
T Consensus 109 ~~~~-------------------------------------------------------------~~~~h~~~v~~v~~s 127 (343)
T 2xzm_R 109 TTYK-------------------------------------------------------------RFVGHQSEVYSVAFS 127 (343)
T ss_dssp CEEE-------------------------------------------------------------EEECCCSCEEEEEEC
T ss_pred cEEE-------------------------------------------------------------EEcCCCCcEEEEEEC
Confidence 5543 567899999999999
Q ss_pred C-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCCC----------CEEEEEECCCeEEEEeCCCceE
Q 002086 564 R-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDD----------DYFISGSLDAKVRIWSISDRLV 629 (969)
Q Consensus 564 ~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~~----------~~L~sgs~Dg~I~IWDl~~~~~ 629 (969)
| +.+|++|+.|++|++||+......... .|...|.+++|+| ++ .+|++++.|+.|++||......
T Consensus 128 p~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 206 (343)
T 2xzm_R 128 PDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR 206 (343)
T ss_dssp SSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEE
T ss_pred CCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCCcee
Confidence 9 889999999999999999854433333 6889999999999 54 7999999999999999766666
Q ss_pred EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 630 VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 630 ~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
..+..|...|.+++|+|+|++|++|+.||.|++||+......... ..+...|.+++|+|++ .+ ++++.|+
T Consensus 207 ~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~--------~~~~~~v~~v~~sp~~-~~-la~~~d~ 276 (343)
T 2xzm_R 207 YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE--------FDAGSTINQIAFNPKL-QW-VAVGTDQ 276 (343)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE--------EECSSCEEEEEECSSS-CE-EEEEESS
T ss_pred EEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee--------ecCCCcEEEEEECCCC-CE-EEEECCC
Confidence 677788899999999999999999999999999999543321110 1234569999999987 44 4566788
Q ss_pred cEEEEeCCcce--E--EEEe---------ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 710 RIRILDGLDIV--H--KFRG---------FRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 710 ~I~IwD~~~~~--~--~~~~---------~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.|++|+..... . .+.. ..+...|.+++|+|+|++|++|+.||.|++|++++
T Consensus 277 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 277 GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 99999965422 1 2221 13566799999999999999999999999999876
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-33 Score=310.23 Aligned_cols=308 Identities=20% Similarity=0.302 Sum_probs=235.5
Q ss_pred ceeeeEecccccCEEEEEE-----eC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 441 LHLCQEIQAHEGSIWTIKF-----SL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~f-----Sp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+.+..+|++|.+.|++|+| ++ |+++||||+.|++|+|||+.+.+...
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------------------- 63 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG--------------------------- 63 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS---------------------------
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc---------------------------
Confidence 4567789999999999999 77 99999999999999999987532100
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-e
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-A 592 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~ 592 (969)
....+...+.+|...|.+++|++ +.+|++|+.|++|++||+.+++++..+ +
T Consensus 64 ---------------------------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~ 116 (343)
T 2xzm_R 64 ---------------------------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG 116 (343)
T ss_dssp ---------------------------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC
T ss_pred ---------------------------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 00123346889999999999999 789999999999999999999988877 7
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe---cCCCCEEEEEEccCC----------CEEEEEeCCCc
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT---DLHEMVTAACYTPDG----------QNALIGSHKGS 659 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~---~~~~~V~sv~fspdg----------~~Lasgs~dg~ 659 (969)
|...|.+++|+| ++.+|++++.|++|++||+......... .|...|.+++|+|++ .+|++++.||.
T Consensus 117 h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 195 (343)
T 2xzm_R 117 HQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195 (343)
T ss_dssp CCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE
T ss_pred CCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE
Confidence 999999999999 9999999999999999999866555444 567889999999987 79999999999
Q ss_pred EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 660 I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
|++||.. ..... ....|...|.+++|+|++ .+|++++.|+.|++||............+...|.+++|+|
T Consensus 196 i~iwd~~-~~~~~--------~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp 265 (343)
T 2xzm_R 196 LKVWNTN-FQIRY--------TFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP 265 (343)
T ss_dssp EEEEETT-TEEEE--------EEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECS
T ss_pred EEEEcCC-CceeE--------EEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECC
Confidence 9999953 22221 125788999999999998 8999999999999999743222222223445699999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcc
Q 002086 740 DGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTS 819 (969)
Q Consensus 740 dg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~ 819 (969)
++.+|+++ .|+.|++|++.+.+... ..... .. . ... ....+........
T Consensus 266 ~~~~la~~-~d~~v~iw~~~~~~~~~----~~~~~-~~-~--------------~~~----------~~~~~~~~~~v~~ 314 (343)
T 2xzm_R 266 KLQWVAVG-TDQGVKIFNLMTQSKAP----VCTIE-AE-P--------------ITK----------AEGQKGKNPQCTS 314 (343)
T ss_dssp SSCEEEEE-ESSCEEEEESSSCCSCS----EEECC-CC-S--------------GGG----------BTTBCCSCCCEEE
T ss_pred CCCEEEEE-CCCCEEEEEeCCCCCCc----eEEee-cC-c--------------chh----------hhhhcCCCCceEE
Confidence 99888755 58889999998743221 00000 00 0 000 0000001112235
Q ss_pred cccCCCCCCccccCCCCccccCCCC
Q 002086 820 ATSSPTKEGSPAGHSRRLLPPLPKK 844 (969)
Q Consensus 820 ~~~SP~~~~i~~~~~~~~L~~~~~~ 844 (969)
.+++|++.++++++.++.+..|...
T Consensus 315 ~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 315 LAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp EEECSSSCCEEEEETTSEEEEEEEE
T ss_pred EEECCCCCeEEEecCCceEEEEEEE
Confidence 6789999999999999999998653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=317.42 Aligned_cols=251 Identities=18% Similarity=0.232 Sum_probs=201.3
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeC------CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGE------DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~------DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
..+|++.|++|+|+|||++||||+. |+.|++|+..++....
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~--------------------------------- 84 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE--------------------------------- 84 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG---------------------------------
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce---------------------------------
Confidence 4579999999999999999999998 6677777766543211
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEE-----EeecCC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLK-----LFAHND 595 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~-----~~~h~~ 595 (969)
.......+|...|.+++|+|+..+++++.||+|+|||+.+++... ..+|..
T Consensus 85 ------------------------~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 140 (357)
T 4g56_B 85 ------------------------SLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDD 140 (357)
T ss_dssp ------------------------GGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSS
T ss_pred ------------------------eEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCC
Confidence 111245679999999999997788899999999999999887653 237999
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE-ecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeee
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW-TDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
.|++|+|+| ++.+|++|+.|+.|++||+.+++++.. ..|...|++++|++++. ++++++.||.|++||+++++....
T Consensus 141 ~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 141 IVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219 (357)
T ss_dssp CEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred CEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee
Confidence 999999999 999999999999999999999887654 55788999999999875 788999999999999998775433
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC-CEEEEEeCCCc
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG-KYIISASEDSQ 752 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg-~~LaSgs~Dg~ 752 (969)
.. ...+...+++++|+|+++.+|++++.|+.|++||............+...|++++|+|++ ++|++|+.|++
T Consensus 220 ~~------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 220 ID------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp CC------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred ee------eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE
Confidence 21 245677899999999987899999999999999987655555555677889999999987 68999999999
Q ss_pred EEEEEcCCC
Q 002086 753 VYVWKREEH 761 (969)
Q Consensus 753 I~IWdl~t~ 761 (969)
|+|||++++
T Consensus 294 i~iwd~~~~ 302 (357)
T 4g56_B 294 VAVLDADFS 302 (357)
T ss_dssp EEEECTTSC
T ss_pred EEEEECCCC
Confidence 999999873
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=306.07 Aligned_cols=305 Identities=17% Similarity=0.288 Sum_probs=235.3
Q ss_pred ehhhccCCCc-ceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccc
Q 002086 330 EFEKSVGHSP-VVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGD 408 (969)
Q Consensus 330 E~~~~~GHs~-~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~ 408 (969)
.+..+.||.. .|.++++..++..+++++.|..+..|.. ....
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~-----~~~~-------------------------------- 49 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGT-----EGDS-------------------------------- 49 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEE-----ETTE--------------------------------
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEc-----CCCc--------------------------------
Confidence 3556678988 8999998888888888888887766531 1000
Q ss_pred hHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEe
Q 002086 409 QREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSM 488 (969)
Q Consensus 409 ~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~ 488 (969)
++ .....+.+|.+.|++++|+|+|++||+|+.|++|+|||+..+...
T Consensus 50 ----------------~~---------------~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~-- 96 (345)
T 3fm0_A 50 ----------------WI---------------CKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFE-- 96 (345)
T ss_dssp ----------------EE---------------EEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EE--
T ss_pred ----------------ce---------------eeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeE--
Confidence 00 000113579999999999999999999999999999998754321
Q ss_pred ecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcE
Q 002086 489 SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHL 567 (969)
Q Consensus 489 ~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~ 567 (969)
.+..+.+|...|.+++|+| +++
T Consensus 97 ---------------------------------------------------------~~~~~~~h~~~v~~v~~sp~~~~ 119 (345)
T 3fm0_A 97 ---------------------------------------------------------CVTTLEGHENEVKSVAWAPSGNL 119 (345)
T ss_dssp ---------------------------------------------------------EEEEECCCSSCEEEEEECTTSSE
T ss_pred ---------------------------------------------------------EEEEccCCCCCceEEEEeCCCCE
Confidence 1236778999999999999 899
Q ss_pred EEEEeCCCcEEEEECCCCc---EEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE---EEEecCCCCEE
Q 002086 568 LLSSSMDKTVRLWDMETKS---CLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV---VDWTDLHEMVT 640 (969)
Q Consensus 568 L~Sgs~DgtV~IWDl~t~~---~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~---~~~~~~~~~V~ 640 (969)
|++|+.|++|++||+.++. ++..+ .|...|.+++|+| ++.+|++++.|++|++||+..+.. ..+..|...|+
T Consensus 120 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~ 198 (345)
T 3fm0_A 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198 (345)
T ss_dssp EEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred EEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceE
Confidence 9999999999999998764 34444 7999999999999 899999999999999999988753 35667889999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-------eee-ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEE
Q 002086 641 AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN-------QVD-FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIR 712 (969)
Q Consensus 641 sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~-------~~~-~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~ 712 (969)
+++|+|+|++|++|+.|++|+||+.......... ... +......|...|.+++|+|++ ..|++++.|+.|+
T Consensus 199 ~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~ 277 (345)
T 3fm0_A 199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIR 277 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEE
Confidence 9999999999999999999999997432211000 000 111113478899999999988 7899999999999
Q ss_pred EEeCCcc------eEEEEe---ecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcCCCCc
Q 002086 713 ILDGLDI------VHKFRG---FRNTSSQISAAFNADG-KYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 713 IwD~~~~------~~~~~~---~~~~~~V~sl~fspdg-~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
+|+.... ...+.. ..|...|.+++|+|++ .+||+|+.||+|+||++.+++.
T Consensus 278 vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 278 VFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 9984321 111221 2567889999999988 5999999999999999998543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=312.06 Aligned_cols=256 Identities=16% Similarity=0.251 Sum_probs=204.3
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
..|...|.+++|+|||++|++++ |+++++||.... .+......
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~----~~~~~~~~-------------------------------- 69 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW----LFKDPCAA-------------------------------- 69 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE----EESSGGGT--------------------------------
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceee----eecccccc--------------------------------
Confidence 35788899999999999999988 889999984321 11100000
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEE-----eecCCCeEEEEE
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKL-----FAHNDYVTCIQF 602 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~-----~~h~~~V~sv~f 602 (969)
...........|...|.+++|++++.|++|+.||+|+|||+.+++++.. .+|...|++|+|
T Consensus 70 --------------~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~ 135 (344)
T 4gqb_B 70 --------------PNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSV 135 (344)
T ss_dssp --------------TCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEE
T ss_pred --------------CCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEE
Confidence 0000111334577889999999988999999999999999999875433 279999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeeecc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKLHQLNQVDFQT 680 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~ 680 (969)
+| ++.+|++|+.|++|++||+.+++++. +..|...|++++|++++. +|++++.|++|++||+++++......
T Consensus 136 sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~----- 209 (344)
T 4gqb_B 136 LS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG----- 209 (344)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----
T ss_pred CC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeee-----
Confidence 99 99999999999999999999988765 456889999999999985 78899999999999999887654322
Q ss_pred cccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEEcC
Q 002086 681 KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG-KYIISASEDSQVYVWKRE 759 (969)
Q Consensus 681 ~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg-~~LaSgs~Dg~I~IWdl~ 759 (969)
...+...+.+++|+|++..+|++|+.|+.|+|||............|...|++++|+|++ ++|++|+.|++|+|||+.
T Consensus 210 -~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 210 -CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp -----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred -cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 134566799999999887889999999999999987655555555677889999999998 689999999999999998
Q ss_pred CC
Q 002086 760 EH 761 (969)
Q Consensus 760 t~ 761 (969)
++
T Consensus 289 ~~ 290 (344)
T 4gqb_B 289 LS 290 (344)
T ss_dssp CC
T ss_pred CC
Confidence 73
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-32 Score=310.67 Aligned_cols=311 Identities=18% Similarity=0.308 Sum_probs=237.8
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
+|.+.|++++|+|||++||+|+ |++++||++.+++.+..+..+...... .
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~--------------------~--------- 111 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD--------------------P--------- 111 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccc--------------------c---------
Confidence 6999999999999999999986 789999999999887755432110000 0
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMD 606 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~ 606 (969)
..........+...|.+++|+| +++|++|+.|++|+|||+.+++++..+ +|...|.+++|+| +
T Consensus 112 --------------~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~ 176 (393)
T 1erj_A 112 --------------ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-S 176 (393)
T ss_dssp -----------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-T
T ss_pred --------------ccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-C
Confidence 0000001223455799999999 899999999999999999999988777 7999999999999 9
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCC
Q 002086 607 DDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h 685 (969)
+.+|++++.|++|++||+++++......+...+.+++|+| ++++|++|+.|+.|++||++++......... .....+|
T Consensus 177 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~-~~~~~~h 255 (393)
T 1erj_A 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE-NESGTGH 255 (393)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------CCC
T ss_pred CCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc-ccCCCCC
Confidence 9999999999999999999999888788888999999999 8999999999999999999988765432211 1112568
Q ss_pred CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc------------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 686 TRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI------------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 686 ~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~------------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
...|.+++|+|++ .+|++++.|+.|++||+... ........|...|.+++|+|++.+|++|+.|+.|
T Consensus 256 ~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v 334 (393)
T 1erj_A 256 KDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 334 (393)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE
T ss_pred CCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeE
Confidence 8999999999988 79999999999999996542 1223344567789999999999999999999999
Q ss_pred EEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccC
Q 002086 754 YVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGH 833 (969)
Q Consensus 754 ~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~ 833 (969)
++||+.+ ++.+..+..+...+.+..+.. ...++|++.++++++
T Consensus 335 ~iwd~~~------~~~~~~l~~h~~~v~~v~~~~-------------------------------~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 335 LFWDKKS------GNPLLMLQGHRNSVISVAVAN-------------------------------GSSLGPEYNVFATGS 377 (393)
T ss_dssp EEEETTT------CCEEEEEECCSSCEEEEEECS-------------------------------SCTTCTTCEEEEEEE
T ss_pred EEEECCC------CeEEEEECCCCCCEEEEEecC-------------------------------CcCcCCCCCEEEEEC
Confidence 9999987 344444433333333222211 112456777788888
Q ss_pred CCCccccCCC
Q 002086 834 SRRLLPPLPK 843 (969)
Q Consensus 834 ~~~~L~~~~~ 843 (969)
.|+.+..|..
T Consensus 378 ~Dg~i~iW~~ 387 (393)
T 1erj_A 378 GDCKARIWKY 387 (393)
T ss_dssp TTSEEEEEEE
T ss_pred CCCcEEECcc
Confidence 8888888854
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-32 Score=323.21 Aligned_cols=406 Identities=12% Similarity=0.142 Sum_probs=278.1
Q ss_pred CcEEEEeeCCCC----cE-----------EEEeeccC--CCcee---------EEEecCCC------ceeeeeehhhccC
Q 002086 289 GAFFLIKNLDTG----KE-----------FIVNEYSE--NGMWN---------KLSDLQTG------KQLTMEEFEKSVG 336 (969)
Q Consensus 289 ~~~~~i~~ld~g----~~-----------~vv~~~~~--dg~~~---------~lWd~~tg------k~l~~~E~~~~~G 336 (969)
+..++||+++++ +. +....+++ ||.++ +|||+.++ +.. .+..+.+
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~---~~~~~~~ 114 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN---VKSEFQV 114 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE---EEEEEEC
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccccc---ccchhhc
Confidence 557888888776 32 33455666 77655 89999877 221 2456678
Q ss_pred CCcceeeeecccccccccCCCCc----ccccccccccccccccccccccceeeeeEEEeeecCCcc-ccCCCCcccchHH
Q 002086 337 HSPVVKELMRRENVNRINDSAGK----FSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKE-CINPNPLLGDQRE 411 (969)
Q Consensus 337 Hs~~V~~l~~~~~~~~~~t~s~d----~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~-~~~~~~l~~~~~~ 411 (969)
|...|.++++..+...+++++.+ ..+..|.. ......+.........+.|+++.. .+..
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--------- 178 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-------GNSLGEVSGHSQRINACHLKQSRPMRSMT--------- 178 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-------CCEEEECCSCSSCEEEEEECSSSSCEEEE---------
T ss_pred ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-------CCcceeeecCCccEEEEEECCCCCcEEEE---------
Confidence 99999999988777777766555 44555541 111223333444555666666543 1111
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEeccccc---CEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEE
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEG---SIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMS 487 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~---~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~ 487 (969)
...++.+. +|++...+.+..+.+|.+ .|++++|+|+ +++|++++.|+.|++||+.+++.+.
T Consensus 179 ------~~~d~~v~---------vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 243 (615)
T 1pgu_A 179 ------VGDDGSVV---------FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243 (615)
T ss_dssp ------EETTTEEE---------EEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred ------EeCCCcEE---------EEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence 11222222 346777888899999999 9999999999 9999999999999999999999888
Q ss_pred ee-c---CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecC-CCceeEeccC----CCCEE
Q 002086 488 MS-E---GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLS-EKPFCSFIGH----LDDVL 558 (969)
Q Consensus 488 ~~-~---~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~k~~~~l~gH----~~~I~ 558 (969)
.+ . .+...+..+.+. ........+.. ....+|... .+.+..+..| ...+.
T Consensus 244 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d--------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 302 (615)
T 1pgu_A 244 YIEDDQEPVQGGIFALSWL-DSQKFATVGAD--------------------ATIRVWDVTTSKCVQKWTLDKQQLGNQQV 302 (615)
T ss_dssp ECCBTTBCCCSCEEEEEES-SSSEEEEEETT--------------------SEEEEEETTTTEEEEEEECCTTCGGGCEE
T ss_pred EecccccccCCceEEEEEc-CCCEEEEEcCC--------------------CcEEEEECCCCcEEEEEcCCCCcccCcee
Confidence 77 4 555555555554 22111111100 011233332 2333344433 34556
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-e---------------------------------cCCCeEEEEEec
Q 002086 559 DLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-A---------------------------------HNDYVTCIQFNP 604 (969)
Q Consensus 559 ~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~---------------------------------h~~~V~sv~fsp 604 (969)
++.|..+.++++++.|+.|++||+.+++.+..+ + |...|.+++| +
T Consensus 303 ~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~ 381 (615)
T 1pgu_A 303 GVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-S 381 (615)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-C
T ss_pred EEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-C
Confidence 666654566666666666666666665555444 3 4455555555 2
Q ss_pred CCCCEEEEEECCCeEEEEeCC----------------------------------CceEEEEecCCCCEEEEEEccCCCE
Q 002086 605 MDDDYFISGSLDAKVRIWSIS----------------------------------DRLVVDWTDLHEMVTAACYTPDGQN 650 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~----------------------------------~~~~~~~~~~~~~V~sv~fspdg~~ 650 (969)
.+..|++++.|+.|++||+. +++.+....+...+.+++|+ +++
T Consensus 382 -~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 458 (615)
T 1pgu_A 382 -KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNY 458 (615)
T ss_dssp -STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSE
T ss_pred -CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCE
Confidence 36677777888887777764 23344444567788999998 889
Q ss_pred EEEEeC-CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeec-C
Q 002086 651 ALIGSH-KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFR-N 728 (969)
Q Consensus 651 Lasgs~-dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~-~ 728 (969)
|++++. ++.|++||+.+++... .....|...|++++|+|++ .+|++++.|+.|++||............ |
T Consensus 459 l~~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h 530 (615)
T 1pgu_A 459 VAVGLEEGNTIQVFKLSDLEVSF-------DLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREVKTSRWAFR 530 (615)
T ss_dssp EEEEETTTSCEEEEETTEEEEEE-------ECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred EEEeecCCCeEEEEECCCccccc-------cccCCccCceEEEEECCCC-CEEEEcCCCCeEEEeeCCCCcceeEeecCC
Confidence 999999 9999999998765431 2236788999999999998 7999999999999999887766655555 7
Q ss_pred CCCeEEEEEeC----------CCCEEEEEeCCCcEEEEEcCCC
Q 002086 729 TSSQISAAFNA----------DGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 729 ~~~V~sl~fsp----------dg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
...|++++|+| ++++|++++.||.|+|||+.++
T Consensus 531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 88999999999 9999999999999999999874
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=299.06 Aligned_cols=253 Identities=17% Similarity=0.282 Sum_probs=209.1
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+..+.+|.+.|++++|+|+|++||||+.|++|+|||+..+.
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~--------------------------------------- 42 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET--------------------------------------- 42 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC---------------------------------------
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC---------------------------------------
Confidence 34578999999999999999999999999999999986321
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc--EEEEe-ecCCCe
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS--CLKLF-AHNDYV 597 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~--~i~~~-~h~~~V 597 (969)
.+.+..+.+|.+.|++++|++ +++|++|+.|++|+|||+.+++ .+..+ .|...|
T Consensus 43 --------------------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v 102 (297)
T 2pm7_B 43 --------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASV 102 (297)
T ss_dssp --------------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCE
T ss_pred --------------------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCce
Confidence 112347889999999999975 6899999999999999999874 33444 799999
Q ss_pred EEEEEecCC--CCEEEEEECCCeEEEEeCCCce---EEEEecCCCCEEEEEEccC-------------CCEEEEEeCCCc
Q 002086 598 TCIQFNPMD--DDYFISGSLDAKVRIWSISDRL---VVDWTDLHEMVTAACYTPD-------------GQNALIGSHKGS 659 (969)
Q Consensus 598 ~sv~fsp~~--~~~L~sgs~Dg~I~IWDl~~~~---~~~~~~~~~~V~sv~fspd-------------g~~Lasgs~dg~ 659 (969)
.+++|+| + +.+|++++.|++|++||++.+. ...+..|...|.+++|+|+ +++|++|+.|++
T Consensus 103 ~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~ 181 (297)
T 2pm7_B 103 NSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (297)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSC
T ss_pred eEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCc
Confidence 9999999 5 7899999999999999998753 4556778889999999997 579999999999
Q ss_pred EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC--CceEEEEeCCCcEEEEeCCcce-----EEEEeecCCCCe
Q 002086 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN--PSEVLVTSADSRIRILDGLDIV-----HKFRGFRNTSSQ 732 (969)
Q Consensus 660 I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~--~~~l~sgs~Dg~I~IwD~~~~~-----~~~~~~~~~~~V 732 (969)
|+|||++++..... ......+|...|.+++|+|++ ..+|++++.|++|+|||..... ..+....+...|
T Consensus 182 v~lwd~~~~~~~~~----~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v 257 (297)
T 2pm7_B 182 VKIWKYNSDAQTYV----LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257 (297)
T ss_dssp EEEEEEETTTTEEE----EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE
T ss_pred EEEEEEcCCCceEE----EEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcE
Confidence 99999987652211 112236799999999999985 4799999999999999965421 112123456789
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.+++|+|+|++|++++.||.|+||+...
T Consensus 258 ~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 258 WRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9999999999999999999999999874
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-32 Score=308.55 Aligned_cols=246 Identities=25% Similarity=0.424 Sum_probs=209.0
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
.|++++|+|||++||+|+.|++|+|||+.+++.+.
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~--------------------------------------------- 159 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM--------------------------------------------- 159 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---------------------------------------------
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---------------------------------------------
Confidence 59999999999999999999999999998766543
Q ss_pred ccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE
Q 002086 533 VHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 533 ~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~ 611 (969)
.+.+|...|.+++|+| +.+|++|+.|++|++||+.++++...+.+...+.+++|+|.++.+|+
T Consensus 160 ----------------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (393)
T 1erj_A 160 ----------------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 223 (393)
T ss_dssp ----------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEE
T ss_pred ----------------EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEE
Confidence 5678999999999999 88999999999999999999999999999999999999997789999
Q ss_pred EEECCCeEEEEeCCCceEEEEe--------cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee----eeec
Q 002086 612 SGSLDAKVRIWSISDRLVVDWT--------DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ----VDFQ 679 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~--------~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~----~~~~ 679 (969)
+|+.|+.|++||++++..+... .|...|.+++|+|++++|++|+.|+.|++||++......... ....
T Consensus 224 ~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~ 303 (393)
T 1erj_A 224 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303 (393)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEE
T ss_pred EEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcce
Confidence 9999999999999988766543 577889999999999999999999999999998654321100 0011
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC------CCCEEEEEeCCCcE
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA------DGKYIISASEDSQV 753 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp------dg~~LaSgs~Dg~I 753 (969)
....+|...|.+++|+|++ .+|++++.|+.|++||............|...|.+++|++ ++.+|++|+.||+|
T Consensus 304 ~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i 382 (393)
T 1erj_A 304 VTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 382 (393)
T ss_dssp EEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred EEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcE
Confidence 2235788999999999988 7999999999999999877665555566788899999986 68899999999999
Q ss_pred EEEEcCC
Q 002086 754 YVWKREE 760 (969)
Q Consensus 754 ~IWdl~t 760 (969)
+||++..
T Consensus 383 ~iW~~~~ 389 (393)
T 1erj_A 383 RIWKYKK 389 (393)
T ss_dssp EEEEEEE
T ss_pred EECcccc
Confidence 9999865
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=300.67 Aligned_cols=297 Identities=16% Similarity=0.281 Sum_probs=215.7
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccc--eEEEee-cC-CccCcccccccCCCCCccCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQEC--EVMSMS-EG-NLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg--~~l~~~-~~-~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
..++++++|++|.+.|++++|+++ +||||+.|++|+|||+..+ +.+..+ .+ +...+..+.+.+........+..
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 346678899999999999999988 9999999999999999875 344444 33 55566666555543222111110
Q ss_pred CCCCcccccCCCCCCCCcccccceeeec--------CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC-
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSL--------SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET- 584 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t- 584 (969)
....+|.. ..+.+..+.+|...|.+++|+| +++|++|+.|++|+|||+..
T Consensus 80 --------------------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 80 --------------------STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp --------------------SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred --------------------CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence 01122222 2234567899999999999999 89999999999999999943
Q ss_pred ---CcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc--e-EEEEecCCCCEEEEEEccC--CCEEEEEe
Q 002086 585 ---KSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR--L-VVDWTDLHEMVTAACYTPD--GQNALIGS 655 (969)
Q Consensus 585 ---~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~--~-~~~~~~~~~~V~sv~fspd--g~~Lasgs 655 (969)
.+++..+ +|...|.+++|+| ++.+|++|+.|++|++||+.++ + +..+..|...|.+++|+|+ +.+|++|+
T Consensus 140 ~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 218 (330)
T 2hes_X 140 GEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS 218 (330)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE
T ss_pred CCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe
Confidence 2455555 7999999999999 8999999999999999999765 3 3456678899999999998 77899999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccc-cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--EEEE-eecCCC-
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKK-KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--HKFR-GFRNTS- 730 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~-~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--~~~~-~~~~~~- 730 (969)
.|++|++||+................. ..|...|.+++|++++ +|++++.|+.|+||+..... .... ...|..
T Consensus 219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~ 296 (330)
T 2hes_X 219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVY 296 (330)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTS
T ss_pred CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccc
Confidence 999999999875421100000011111 2488899999999754 89999999999999965432 1212 234555
Q ss_pred CeEEEEEeC--CCCEEEEEeCCCcEEEEEcCC
Q 002086 731 SQISAAFNA--DGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 731 ~V~sl~fsp--dg~~LaSgs~Dg~I~IWdl~t 760 (969)
.|.+++|+| ++++|++|+.||+|+||++++
T Consensus 297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 799999999 789999999999999999875
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=294.08 Aligned_cols=291 Identities=23% Similarity=0.355 Sum_probs=236.1
Q ss_pred cceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
...+..++.+|.+.|++++|+|++++|++|+.||.|+||++.+++....+.++...+..+.+.+........+.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------ 85 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD------ 85 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET------
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC------
Confidence 35567789999999999999999999999999999999999999988888877777766665554322211111
Q ss_pred ccccCCCCCCCCcccccceeeec-CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSL-SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~-~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
.....+|.. ..+.+..+.+|...|.++.|+| +++|++|+.|++|++||+.+++++..+ .|...
T Consensus 86 --------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 151 (312)
T 4ery_A 86 --------------DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151 (312)
T ss_dssp --------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred --------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence 011234444 3456678899999999999999 899999999999999999999988877 78999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
|.+++|+| ++.+|++++.||.|++||+++++.+... .+...+..++|+|++++|++++.||.|++||+.+++.....
T Consensus 152 v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 230 (312)
T 4ery_A 152 VSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230 (312)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred EEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 99999999 8999999999999999999998766543 34567999999999999999999999999999988765432
Q ss_pred eeeecccccCCCCC--eEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe--CC
Q 002086 675 QVDFQTKKKSSTRK--ITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS--ED 750 (969)
Q Consensus 675 ~~~~~~~~~~h~~~--It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs--~D 750 (969)
..|... .....+++.+..+|++++.|+.|++||............|...|.+++|+|++.+|++++ .|
T Consensus 231 --------~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d 302 (312)
T 4ery_A 231 --------TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302 (312)
T ss_dssp --------CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTT
T ss_pred --------EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCC
Confidence 223322 223345544447999999999999999877665555566788899999999999999997 69
Q ss_pred CcEEEEEcC
Q 002086 751 SQVYVWKRE 759 (969)
Q Consensus 751 g~I~IWdl~ 759 (969)
+.|++|+.+
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999975
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=286.56 Aligned_cols=324 Identities=15% Similarity=0.207 Sum_probs=248.6
Q ss_pred CCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHh
Q 002086 337 HSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQK 416 (969)
Q Consensus 337 Hs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~ 416 (969)
|...|.++++..++..++.+..+..+..|... ..........+.....++.|+++...+...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~------------- 69 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIP-----RHARQINTLNHGEVVCAVTISNPTRHVYTG------------- 69 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCC-----SEEEEEEEECCSSCCCEEEECSSSSEEEEE-------------
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccC-----CccccceeccCCCceEEEEEecCCcEEEEc-------------
Confidence 45678888887777766555444433333211 110000111223344445555555443322
Q ss_pred hccccCcceEEEccCCCcccccccceeeeEec--ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCcc
Q 002086 417 QNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQ--AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLT 494 (969)
Q Consensus 417 ~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~--gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~ 494 (969)
.++.+.++....+... ..+..+. +|...|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus 70 ---~dg~i~iw~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~------- 133 (337)
T 1gxr_A 70 ---GKGCVKVWDISHPGNK------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI------- 133 (337)
T ss_dssp ---CBSEEEEEETTSTTCC------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE-------
T ss_pred ---CCCeEEEEECCCCCce------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce-------
Confidence 1333333333222211 1222333 899999999999999999999999999999998654211
Q ss_pred CcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC
Q 002086 495 PIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM 573 (969)
Q Consensus 495 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~ 573 (969)
...+.+|...|.+++|++ +++|++++.
T Consensus 134 ----------------------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 134 ----------------------------------------------------KAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp ----------------------------------------------------EEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred ----------------------------------------------------eeecccCCCceEEEEECCCCCEEEEEeC
Confidence 225667999999999999 789999999
Q ss_pred CCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEE
Q 002086 574 DKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNAL 652 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~La 652 (969)
|+.|++||+.+++.+..+ .|...|.+++|+| ++.+|++++.||.|++||+++++.+....+...+.+++|+|++++|+
T Consensus 162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 240 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred CCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEE
Confidence 999999999999988877 6999999999999 89999999999999999999999888888889999999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCe
Q 002086 653 IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQ 732 (969)
Q Consensus 653 sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V 732 (969)
+++.++.|++||+.+.+... ...|...|.+++|+|++ .+|++++.|+.|++||......... ..+...+
T Consensus 241 ~~~~~~~i~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v 309 (337)
T 1gxr_A 241 VGMESSNVEVLHVNKPDKYQ---------LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSV 309 (337)
T ss_dssp EEETTSCEEEEETTSSCEEE---------ECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEE-EECSSCE
T ss_pred EEcCCCcEEEEECCCCCeEE---------EcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeEEEE-ecCCCcE
Confidence 99999999999999876432 15678899999999988 7899999999999999776554433 4467789
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
.+++|+|++++|++++.||.|++|++
T Consensus 310 ~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 310 LSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999999999997
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=329.55 Aligned_cols=252 Identities=19% Similarity=0.288 Sum_probs=221.3
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
+++.+.|.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+.
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~--------------------------------- 49 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR--------------------------------- 49 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---------------------------------
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---------------------------------
Confidence 45667899999999999999999999999999999999998876654
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVT 598 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~ 598 (969)
.+.+|...|.+++|+| +++|++|+.||.|++||+.+++.+..+ +|...|+
T Consensus 50 ----------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~ 101 (814)
T 3mkq_A 50 ----------------------------SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101 (814)
T ss_dssp ----------------------------EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred ----------------------------EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEE
Confidence 5667999999999999 889999999999999999999998877 6999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCc-eE-EEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISDR-LV-VDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~-~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
+++|+| ++.+|++++.||.|++||+.++ .. ..+..|...|.+++|+| ++..|++++.||.|++||+.++.......
T Consensus 102 ~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 180 (814)
T 3mkq_A 102 SIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180 (814)
T ss_dssp EEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred EEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEe
Confidence 999999 9999999999999999999876 43 34556788999999999 88999999999999999998776533221
Q ss_pred eeecccccCCCCCeEEEEEcC--CCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 676 VDFQTKKKSSTRKITGFQFSP--SNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fsp--d~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
..+...+.+++|+| ++ .++++++.|+.|++||............|...|.+++|+|++.+|++++.||.|
T Consensus 181 -------~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v 252 (814)
T 3mkq_A 181 -------TGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252 (814)
T ss_dssp -------CCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred -------cCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeE
Confidence 34458899999999 66 799999999999999987766555556677889999999999999999999999
Q ss_pred EEEEcCCCC
Q 002086 754 YVWKREEHR 762 (969)
Q Consensus 754 ~IWdl~t~~ 762 (969)
++||+.+++
T Consensus 253 ~vwd~~~~~ 261 (814)
T 3mkq_A 253 KIWNSSTYK 261 (814)
T ss_dssp EEEETTTCS
T ss_pred EEEECCCCc
Confidence 999998743
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-31 Score=292.34 Aligned_cols=293 Identities=20% Similarity=0.349 Sum_probs=226.5
Q ss_pred cccceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccce-----EEEeecCCccCcccccccCCCCCccCC
Q 002086 438 LSALHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECE-----VMSMSEGNLTPIHPSLCNSSDKASSLD 511 (969)
Q Consensus 438 l~~~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~-----~l~~~~~~~~~v~~~~~~~~~~~~~~~ 511 (969)
-+.+++..+|+||.+.|++|+|+|+ +++|||||.|++|+|||+.+.+ ....+.++...+..+.+.+........
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 3456677899999999999999997 6899999999999999987643 344566666666665555433222111
Q ss_pred CCCCCCCcccccCCCCCCCCcccccceeeec-CCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEE
Q 002086 512 GSSPNPPPEKKKKGKHSSPDYVHVPETVFSL-SEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLK 589 (969)
Q Consensus 512 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~ 589 (969)
+.. ....+|.. ..........+...+..+.+++ +.+|++|+.|+.+++||+.......
T Consensus 105 ~~d--------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~ 164 (340)
T 4aow_A 105 SWD--------------------GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT 164 (340)
T ss_dssp ETT--------------------SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred ccc--------------------ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE
Confidence 100 00112222 2233445667888899999998 8899999999999999998776655
Q ss_pred Ee--ecCCCeEEEEEecCC-CCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 002086 590 LF--AHNDYVTCIQFNPMD-DDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSI 665 (969)
Q Consensus 590 ~~--~h~~~V~sv~fsp~~-~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl 665 (969)
.. +|...|.+++|++.. ..++++++.|+.|++||+.+++++. +..|...|++++|+|++++|++|+.||.|++||+
T Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~ 244 (340)
T 4aow_A 165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244 (340)
T ss_dssp ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence 44 789999999998732 3578899999999999999987665 4567889999999999999999999999999999
Q ss_pred CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEE---------eecCCCCeEEEE
Q 002086 666 EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR---------GFRNTSSQISAA 736 (969)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~---------~~~~~~~V~sl~ 736 (969)
.+.+..... .+...|.++.|+|++ .+++++.|+.|++||......... ...+...|++++
T Consensus 245 ~~~~~~~~~---------~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 313 (340)
T 4aow_A 245 NEGKHLYTL---------DGGDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 313 (340)
T ss_dssp TTTEEEEEE---------ECSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEE
T ss_pred ccCceeeee---------cCCceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE
Confidence 988765432 234679999999975 677888899999999765433222 234677899999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 737 FNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 737 fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|+|||++|++|+.||.|+|||+.++
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 9999999999999999999999985
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-31 Score=335.25 Aligned_cols=397 Identities=12% Similarity=0.089 Sum_probs=260.5
Q ss_pred CCcEEEEeeCCCCcEEE---------EeeccCCCc---------eeEEEecCCCceeeeeehhhccCCCcceeeeecccc
Q 002086 288 LGAFFLIKNLDTGKEFI---------VNEYSENGM---------WNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRREN 349 (969)
Q Consensus 288 ~~~~~~i~~ld~g~~~v---------v~~~~~dg~---------~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~ 349 (969)
.++.++||+.++++... ...|+. |. .++|||+++++.+. .+ .|...|.++++..+
T Consensus 37 ~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~--~~----~~~~~V~~v~~sp~ 109 (902)
T 2oaj_A 37 VTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLT--TV----FVPGKITSIDTDAS 109 (902)
T ss_dssp TTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEE--EE----ECSSCEEEEECCTT
T ss_pred CCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEE--EE----cCCCCEEEEEECCC
Confidence 56788888877654332 222333 33 35899999998754 22 26678999999888
Q ss_pred cccccCCCCccccccccccccccccccc-----c-cccceeeeeEEEeeecCCcc-ccCCCCcccchHHHHHHhhccccC
Q 002086 350 VNRINDSAGKFSANSYLSKSLRMSKRRG-----A-ALLKNIKGVAHSMSVKGDKE-CINPNPLLGDQREQKEQKQNKNVS 422 (969)
Q Consensus 350 ~~~~~t~s~d~~v~~~~~~~~~~~k~~~-----~-~~l~~v~gv~~s~~~~gd~~-~~~~~~l~~~~~~~~~~~~~~~~~ 422 (969)
...+++++.+..+..|.....++..... . ..++.+.+.+.+++|+++.. .+.. ...++
T Consensus 110 g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~---------------g~~dg 174 (902)
T 2oaj_A 110 LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI---------------SYEYV 174 (902)
T ss_dssp CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE---------------ECSSC
T ss_pred CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE---------------EeCCC
Confidence 8888888899988888654322210000 0 11223334445555555421 1111 11222
Q ss_pred cceEEEccCCCcccccccceeeeEeccc------------------ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce
Q 002086 423 NHWVKVRQSGKSYKDLSALHLCQEIQAH------------------EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE 484 (969)
Q Consensus 423 ~~~v~v~~~~~~l~dl~~~~l~~~L~gH------------------~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~ 484 (969)
.+ +|++...+.++.+.+| ...|++++|+|||++||||+.||+|+|||+.+++
T Consensus 175 ~v----------lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 175 TL----------TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EE----------EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred cE----------EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 22 2355555556666554 6889999999999999999999999999999888
Q ss_pred EEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEec-
Q 002086 485 VMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS- 563 (969)
Q Consensus 485 ~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs- 563 (969)
.+..........+. .. ...+. .-..|...|++++|+
T Consensus 245 ~~~~r~l~~~~~~~----------------~~--------------------------~~~~~-~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 245 MIMARTVFETEINV----------------PQ--------------------------PDYIR-DSSTNAAKISKVYWMC 281 (902)
T ss_dssp EEEEECSSCSCTTS----------------CC--------------------------TTCCC-CCSSCCCEEEEEEEEE
T ss_pred EEEEEeecccccCC----------------CC--------------------------CcCCC-CCccccCCeeEEEEEe
Confidence 76531100000000 00 00000 000356789999995
Q ss_pred ---CC--cEEEEEeCC-----CcEEEEECC------------------CCcEEEEe--ecCCCeEEEEEec---------
Q 002086 564 ---RS--HLLLSSSMD-----KTVRLWDME------------------TKSCLKLF--AHNDYVTCIQFNP--------- 604 (969)
Q Consensus 564 ---~~--~~L~Sgs~D-----gtV~IWDl~------------------t~~~i~~~--~h~~~V~sv~fsp--------- 604 (969)
|+ .+|++|+.| +.|.+|++. +.++...+ .+...|.++.+.+
T Consensus 282 ~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~ 361 (902)
T 2oaj_A 282 ENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGC 361 (902)
T ss_dssp CSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHT
T ss_pred cCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCC
Confidence 32 567777776 389999853 33445554 5788899999865
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEEE--------ecCCCCEE----------------------------------EE
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVDW--------TDLHEMVT----------------------------------AA 642 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~--------~~~~~~V~----------------------------------sv 642 (969)
.+...+++++.||.|++||+.++..... ..+...|+ .+
T Consensus 362 ~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv 441 (902)
T 2oaj_A 362 HNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQK 441 (902)
T ss_dssp BSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCC
T ss_pred CCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcc
Confidence 1345889999999999999977643221 12223344 44
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec---ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc
Q 002086 643 CYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ---TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI 719 (969)
Q Consensus 643 ~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~---~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~ 719 (969)
+|+|++++|++|+.|++|++||+.++.......+... ....+|...|.+++|+|++ .+|++|+.|++|+|||....
T Consensus 442 ~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg-~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 442 LPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET-LELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp CCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT-TEEEEEETTSCEEEEEEEEC
T ss_pred cccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCC-CeEEEEecCcEEEEEEecCc
Confidence 5578899999999999999999988753211111100 0013788899999999998 79999999999999995432
Q ss_pred ---------------------------------------------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 720 ---------------------------------------------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 720 ---------------------------------------------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
........|...|++++|+||| +||+|+.|++|+
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~ 599 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLM 599 (902)
T ss_dssp CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEE
T ss_pred cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEE
Confidence 1122334478899999999999 999999999999
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
|||++++
T Consensus 600 lwd~~~~ 606 (902)
T 2oaj_A 600 LIDRRGP 606 (902)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 9999764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=303.30 Aligned_cols=304 Identities=17% Similarity=0.211 Sum_probs=227.1
Q ss_pred cccccceeeeEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEec----ccceE------EEeecCCccCcccccccCC
Q 002086 436 KDLSALHLCQEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEV----QECEV------MSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl----~tg~~------l~~~~~~~~~v~~~~~~~~ 504 (969)
++++..........|.+.|++++|+|+++ +||+|+.|+.|+||++ .+++. ...+...
T Consensus 30 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~------------ 97 (425)
T 1r5m_A 30 DDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP------------ 97 (425)
T ss_dssp ----CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC------------
T ss_pred ccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc------------
Confidence 34444444444556779999999999999 9999999999999999 77662 2211100
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME 583 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~ 583 (969)
........+|.+.|++++|+| +++|++|+.||.|++|| .
T Consensus 98 ---------------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~ 137 (425)
T 1r5m_A 98 ---------------------------------------FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-K 137 (425)
T ss_dssp ---------------------------------------CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-T
T ss_pred ---------------------------------------ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-C
Confidence 000013346888999999999 88999999999999999 5
Q ss_pred CCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC-CC---------------EEEEEEcc
Q 002086 584 TKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH-EM---------------VTAACYTP 646 (969)
Q Consensus 584 t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~-~~---------------V~sv~fsp 646 (969)
+++.+..+ .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+...... .. +.+++|++
T Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (425)
T 1r5m_A 138 TGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216 (425)
T ss_dssp TSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE
T ss_pred CCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC
Confidence 56666655 7999999999999 9999999999999999999998876655443 33 88999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee
Q 002086 647 DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF 726 (969)
Q Consensus 647 dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~ 726 (969)
++ .+++++.+|.|++||+..++..... ..|...|.+++|+|++ .+|++++.|+.|++||...........
T Consensus 217 ~~-~~~~~~~~g~i~~~d~~~~~~~~~~--------~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~ 286 (425)
T 1r5m_A 217 DD-KFVIPGPKGAIFVYQITEKTPTGKL--------IGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFY 286 (425)
T ss_dssp TT-EEEEECGGGCEEEEETTCSSCSEEE--------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEEC
T ss_pred CC-EEEEEcCCCeEEEEEcCCCceeeee--------ccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEec
Confidence 85 6889999999999999987654322 5688899999999988 799999999999999977654444445
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEE
Q 002086 727 RNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQT 806 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~ 806 (969)
.+...|.+++|+|++ +|++++.||.|++||+.++ +.......+..
T Consensus 287 ~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~---------------------------- 331 (425)
T 1r5m_A 287 GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN------TLLALSIVDGV---------------------------- 331 (425)
T ss_dssp CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT------EEEEEEECTTC----------------------------
T ss_pred CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC------cEeEecccCCc----------------------------
Confidence 567889999999999 9999999999999999873 32222211111
Q ss_pred cccccccCCCCcccccCCCCCCccccCCCCccccCCCCCC
Q 002086 807 KKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTN 846 (969)
Q Consensus 807 ~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~ 846 (969)
......++|++.++++++.++.+..|...+.
T Consensus 332 ---------~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 332 ---------PIFAGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp ---------CEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred ---------cEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 1123456778888888888888888876543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=302.04 Aligned_cols=357 Identities=15% Similarity=0.130 Sum_probs=259.2
Q ss_pred EEEecCCCceeeeeehhhccCCCcceeeeecccccc-cccCCCCccccccccc----ccccc----ccccc-ccccc---
Q 002086 316 KLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVN-RINDSAGKFSANSYLS----KSLRM----SKRRG-AALLK--- 382 (969)
Q Consensus 316 ~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~-~~~t~s~d~~v~~~~~----~~~~~----~k~~~-~~~l~--- 382 (969)
.+|+++..... -....|...|.++++..+.. .+++++.+..+..|.. ...+. ..... .+.+.
T Consensus 28 ~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 1r5m_A 28 SSDDLDGFVKI-----LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA 102 (425)
T ss_dssp ------CCCEE-----CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-
T ss_pred ccccchhhhhh-----eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc
Confidence 57888766542 23346778999999877777 8888888888888765 22110 00000 00000
Q ss_pred ---eeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEE
Q 002086 383 ---NIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKF 459 (969)
Q Consensus 383 ---~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~f 459 (969)
...+...++.|+++...++.. ..++.+.++ + ...+.+..+.+|.+.|++++|
T Consensus 103 ~~~~~~~~v~~~~~s~~~~~l~~~---------------~~dg~i~i~---------~-~~~~~~~~~~~~~~~v~~~~~ 157 (425)
T 1r5m_A 103 SSGKTTNQVTCLAWSHDGNSIVTG---------------VENGELRLW---------N-KTGALLNVLNFHRAPIVSVKW 157 (425)
T ss_dssp -----CBCEEEEEECTTSSEEEEE---------------ETTSCEEEE---------E-TTSCEEEEECCCCSCEEEEEE
T ss_pred cccCCCCceEEEEEcCCCCEEEEE---------------eCCCeEEEE---------e-CCCCeeeeccCCCccEEEEEE
Confidence 123355566666655442221 123333333 2 334567788999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCccccccee
Q 002086 460 SLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETV 539 (969)
Q Consensus 460 SpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 539 (969)
+|++++|++++.|+.|++||+.+++.+..+..+......
T Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----------------------------------------- 196 (425)
T 1r5m_A 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS----------------------------------------- 196 (425)
T ss_dssp CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------------------------------------------
T ss_pred CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc-----------------------------------------
Confidence 999999999999999999999998887754432111000
Q ss_pred eecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCe
Q 002086 540 FSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAK 618 (969)
Q Consensus 540 ~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~ 618 (969)
.......++...|.++.|+++..+++++.|+.|++||+.+++.+..+ .|...|.+++|+| ++.+|++++.|+.
T Consensus 197 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 197 -----INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGT 270 (425)
T ss_dssp --------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEEEEETTSC
T ss_pred -----eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEEEEcCCCE
Confidence 00001223344588899999889999999999999999999887776 7999999999999 8999999999999
Q ss_pred EEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 619 VRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 619 I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
|++||+.+++.+. +..+...|.+++|+|++ +|++++.|+.|++||+.+++..... ..|...|.+++|+|+
T Consensus 271 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS--------IVDGVPIFAGRISQD 341 (425)
T ss_dssp EEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE--------ECTTCCEEEEEECTT
T ss_pred EEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec--------ccCCccEEEEEEcCC
Confidence 9999999876554 44578899999999999 9999999999999999988765432 457889999999998
Q ss_pred CCceEEEEeCCCcEEEEeCCcce--------------------EEEEeecCCC--CeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 698 NPSEVLVTSADSRIRILDGLDIV--------------------HKFRGFRNTS--SQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~~~~--------------------~~~~~~~~~~--~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
+ .+|++++.|+.|++||..... .......+.. .|.+++|+|++++|++++.||.|+|
T Consensus 342 ~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 342 G-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp S-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred C-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 8 799999999999999976544 3333444444 8999999999999999999999999
Q ss_pred EEcC
Q 002086 756 WKRE 759 (969)
Q Consensus 756 Wdl~ 759 (969)
|+++
T Consensus 421 w~~~ 424 (425)
T 1r5m_A 421 VAIP 424 (425)
T ss_dssp EECC
T ss_pred Eeec
Confidence 9986
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-31 Score=294.22 Aligned_cols=288 Identities=16% Similarity=0.258 Sum_probs=230.2
Q ss_pred hhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchH
Q 002086 331 FEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQR 410 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~ 410 (969)
...+.||...|.++++..+...+++++.|..+..|.... ......+......+..+.|+++...+...
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~------- 115 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-----TNKVHAIPLRSSWVMTCAYAPSGNYVACG------- 115 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-----CCEEEEEECSSSCEEEEEECTTSSEEEEE-------
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-----CCcceEeecCCccEEEEEECCCCCEEEEE-------
Confidence 356689999999999988888899999999887775332 22222223333445556666665443221
Q ss_pred HHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 411 EQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 411 ~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
..+..+.++...... ........+.+|.+.|.++.|++++. |++++.|++|+|||+.+++.+.
T Consensus 116 --------~~d~~v~iw~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~--- 178 (340)
T 1got_B 116 --------GLDNICSIYNLKTRE-----GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTT--- 178 (340)
T ss_dssp --------ETTCEEEEEETTTCS-----BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE---
T ss_pred --------eCCCeEEEEECccCC-----CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEE---
Confidence 123333333222111 12356678999999999999998875 8999999999999998876544
Q ss_pred CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE
Q 002086 491 GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL 569 (969)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~ 569 (969)
.+.+|.+.|.+++|+| +.+|+
T Consensus 179 ----------------------------------------------------------~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 179 ----------------------------------------------------------TFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp ----------------------------------------------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ----------------------------------------------------------EEcCCCCceEEEEECCCCCEEE
Confidence 5668999999999999 78999
Q ss_pred EEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC---CCEEEEEEc
Q 002086 570 SSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACYT 645 (969)
Q Consensus 570 Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~---~~V~sv~fs 645 (969)
+|+.|++|++||+.++.++..+ +|...|++++|+| ++.+|++|+.||+|++||++.++.+....+. ..|.+++|+
T Consensus 201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 279 (340)
T 1got_B 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC
Confidence 9999999999999999998887 7999999999999 9999999999999999999998877665544 479999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 646 PDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 646 pdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
|+|++|++|+.||.|++||+.+.+..... .+|...|.+++|+|++ .+|++++.|+.|+|||
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~s~dg-~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKADRAGVL--------AGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred CCCCEEEEECCCCeEEEEEcccCcEeeEe--------ecCCCcEEEEEEcCCC-CEEEEEcCCccEEecC
Confidence 99999999999999999999887754332 6789999999999988 7999999999999997
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=295.58 Aligned_cols=290 Identities=18% Similarity=0.223 Sum_probs=229.6
Q ss_pred hhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHH
Q 002086 332 EKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQRE 411 (969)
Q Consensus 332 ~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~ 411 (969)
..+.||...|+++++..+...+++++.|..+..|.....+... .+......+.++.|+++...+..
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~-----~~~~~~~~v~~~~~sp~g~~las--------- 123 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH-----AVTMPCTWVMACAYAPSGCAIAC--------- 123 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----EEECSSSCCCEEEECTTSSEEEE---------
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce-----EEecCCCCEEEEEECCCCCEEEE---------
Confidence 4568999999999998888899999999999888744322211 11112223344555555544322
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecC
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEG 491 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~ 491 (969)
...+....++....... .........+.+|.+.|.+++|+|++.+|++|+.|++|+|||+.+++.+.
T Consensus 124 ------g~~d~~i~v~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~---- 190 (354)
T 2pbi_B 124 ------GGLDNKCSVYPLTFDKN---ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ---- 190 (354)
T ss_dssp ------ESTTSEEEEEECCCCTT---CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE----
T ss_pred ------eeCCCCEEEEEEecccc---ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE----
Confidence 22333444443322211 11123456788999999999999999999999999999999998776544
Q ss_pred CccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEE
Q 002086 492 NLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLL 568 (969)
Q Consensus 492 ~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L 568 (969)
.+.+|...|.+++|++ +++|
T Consensus 191 ---------------------------------------------------------~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 191 ---------------------------------------------------------SFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp ---------------------------------------------------------EEECCSSCEEEEEECCCSSCCEE
T ss_pred ---------------------------------------------------------EEcCCCCCeEEEEEEeCCCCCEE
Confidence 5678999999999987 4799
Q ss_pred EEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC---CCEEEEEE
Q 002086 569 LSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH---EMVTAACY 644 (969)
Q Consensus 569 ~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~---~~V~sv~f 644 (969)
++|+.||+|++||+.+++++..+ .|...|++++|+| ++.+|++|+.|++|++||++.+..+...... ..+.+++|
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence 99999999999999999999887 7999999999999 8999999999999999999988766555433 46899999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 645 TPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 645 spdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
+|++.+|++|+.|+.|++||+.+++.... ..+|...|++++|+|++ .+|++++.|++|+||+
T Consensus 293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~--------l~~h~~~v~~l~~spdg-~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSI--------LFGHENRVSTLRVSPDG-TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEE--------ECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEC
T ss_pred eCCCCEEEEEECCCcEEEEECCCCceEEE--------EECCCCcEEEEEECCCC-CEEEEEcCCCCEEecC
Confidence 99999999999999999999988775432 26789999999999998 7999999999999996
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-30 Score=285.75 Aligned_cols=292 Identities=15% Similarity=0.259 Sum_probs=238.7
Q ss_pred cceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 440 ALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 440 ~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
.......|.+|.+.|++|+|+|++++|++|+.||.|+|||+.+++.+.
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-------------------------------- 68 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-------------------------------- 68 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE--------------------------------
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh--------------------------------
Confidence 344556799999999999999999999999999999999998766544
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeE
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVT 598 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~ 598 (969)
.+.+|...|.+++|++ +++|++++.||.|++||+.+++++..+.+...|.
T Consensus 69 -----------------------------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~ 119 (369)
T 3zwl_B 69 -----------------------------TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK 119 (369)
T ss_dssp -----------------------------EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEE
T ss_pred -----------------------------hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeE
Confidence 5667999999999999 8899999999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEEECC-----CeEEEEeCCCce------------EEEEecCCC--CEEEEEEccCCCEEEEEeCCCc
Q 002086 599 CIQFNPMDDDYFISGSLD-----AKVRIWSISDRL------------VVDWTDLHE--MVTAACYTPDGQNALIGSHKGS 659 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~~------------~~~~~~~~~--~V~sv~fspdg~~Lasgs~dg~ 659 (969)
+++|+| ++.+|++++.+ +.|++||+.... ......+.. .+.+++|+|++++|++++.||.
T Consensus 120 ~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 198 (369)
T 3zwl_B 120 RVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK 198 (369)
T ss_dssp EEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE
T ss_pred EEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE
Confidence 999999 99999999999 999999996542 223344444 8999999999999999999999
Q ss_pred EEEEEcCC-CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe
Q 002086 660 CRLYSIED-SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN 738 (969)
Q Consensus 660 I~IwDl~~-~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs 738 (969)
|++||+.+ ...... ...|...|.+++|+|++ .+|++++.|+.|++||.......... .+...+..++|+
T Consensus 199 i~i~d~~~~~~~~~~--------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~ 268 (369)
T 3zwl_B 199 ISKYDVSNNYEYVDS--------IDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLKKY-ETDCPLNTAVIT 268 (369)
T ss_dssp EEEEETTTTTEEEEE--------EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC
T ss_pred EEEEECCCCcEeEEE--------EecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceeeee-cCCCCceeEEec
Confidence 99999998 443322 15678899999999987 79999999999999998765443333 367789999999
Q ss_pred CCCCEEEEEeCCC--------------cEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccE
Q 002086 739 ADGKYIISASEDS--------------QVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPV 804 (969)
Q Consensus 739 pdg~~LaSgs~Dg--------------~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v 804 (969)
|++++|++++.++ .|++||+.++ +.......+...
T Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~------------------------- 317 (369)
T 3zwl_B 269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE------EEIGRVQGHFGP------------------------- 317 (369)
T ss_dssp SSSSEEEEEECCC-------------CEEEEEETTTC------CEEEEEECCSSC-------------------------
T ss_pred CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC------cchhheecccCc-------------------------
Confidence 9999999999998 7888887763 222222111111
Q ss_pred EEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCC
Q 002086 805 QTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTN 846 (969)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~ 846 (969)
.....++|++.++++++.++.+..|....+
T Consensus 318 ------------v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 318 ------------LNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ------------EEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ------------EEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 223456788888888888998988876543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=292.00 Aligned_cols=255 Identities=17% Similarity=0.282 Sum_probs=213.4
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+++..+.+|.+.|++++|+|++++||+|+.||.|+|||+......
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~----------------------------------- 46 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK----------------------------------- 46 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE-----------------------------------
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce-----------------------------------
Confidence 456778999999999999999999999999999999998732211
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc--EEEEe-ecCC
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS--CLKLF-AHND 595 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~--~i~~~-~h~~ 595 (969)
.+..+.+|...|++++|++ +.+|++|+.||.|++||+.+++ .+..+ .|..
T Consensus 47 ------------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 102 (379)
T 3jrp_A 47 ------------------------LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA 102 (379)
T ss_dssp ------------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred ------------------------eeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc
Confidence 1235778999999999975 6899999999999999999987 44444 6999
Q ss_pred CeEEEEEecCC--CCEEEEEECCCeEEEEeCCCc---eEEEEecCCCCEEEEEEcc-------------CCCEEEEEeCC
Q 002086 596 YVTCIQFNPMD--DDYFISGSLDAKVRIWSISDR---LVVDWTDLHEMVTAACYTP-------------DGQNALIGSHK 657 (969)
Q Consensus 596 ~V~sv~fsp~~--~~~L~sgs~Dg~I~IWDl~~~---~~~~~~~~~~~V~sv~fsp-------------dg~~Lasgs~d 657 (969)
.|.+++|+| + +.+|++++.|+.|++||+..+ .......+...|.+++|+| ++.+|++++.|
T Consensus 103 ~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 181 (379)
T 3jrp_A 103 SVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 181 (379)
T ss_dssp CEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT
T ss_pred ceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC
Confidence 999999999 7 899999999999999999876 3456667889999999999 69999999999
Q ss_pred CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC--CceEEEEeCCCcEEEEeCCcc-----eEEEEeecCCC
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN--PSEVLVTSADSRIRILDGLDI-----VHKFRGFRNTS 730 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~--~~~l~sgs~Dg~I~IwD~~~~-----~~~~~~~~~~~ 730 (969)
|.|++||++....... .......|...|.+++|+|++ +.+|++++.|+.|++||.... ...+....+..
T Consensus 182 g~i~i~d~~~~~~~~~----~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 257 (379)
T 3jrp_A 182 NLVKIWKYNSDAQTYV----LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 257 (379)
T ss_dssp SCEEEEEEETTTTEEE----EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS
T ss_pred CeEEEEEecCCCccee----eEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCC
Confidence 9999999987654322 112236788999999999993 489999999999999997653 22233334778
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 731 SQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 731 ~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.|.+++|+|+|++|++++.||.|+||++..
T Consensus 258 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 258 VLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 899999999999999999999999999985
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=296.88 Aligned_cols=248 Identities=17% Similarity=0.267 Sum_probs=199.7
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.+.+|.+.|++++|+|+|++||||+.|++|+|||+.+++...
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~-------------------------------------- 49 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQIL-------------------------------------- 49 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEE--------------------------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEE--------------------------------------
Confidence 467999999999999999999999999999999997654211
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc--EEEEe-ecCCCeEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS--CLKLF-AHNDYVTC 599 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~--~i~~~-~h~~~V~s 599 (969)
+..+.+|.+.|++++|++ +++|++|+.|++|+|||+.+++ .+..+ +|...|.+
T Consensus 50 ---------------------~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~ 108 (316)
T 3bg1_A 50 ---------------------IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNS 108 (316)
T ss_dssp ---------------------EEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCE
T ss_pred ---------------------EEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEE
Confidence 226789999999999975 6899999999999999999874 44444 79999999
Q ss_pred EEEecCC--CCEEEEEECCCeEEEEeCCCceEE----EEecCCCCEEEEEEccC-----------------CCEEEEEeC
Q 002086 600 IQFNPMD--DDYFISGSLDAKVRIWSISDRLVV----DWTDLHEMVTAACYTPD-----------------GQNALIGSH 656 (969)
Q Consensus 600 v~fsp~~--~~~L~sgs~Dg~I~IWDl~~~~~~----~~~~~~~~V~sv~fspd-----------------g~~Lasgs~ 656 (969)
++|+| + +.+|++|+.|++|++||++.+... ....|...|.+++|+|+ +++|++|+.
T Consensus 109 v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 187 (316)
T 3bg1_A 109 VCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC 187 (316)
T ss_dssp EEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBT
T ss_pred EEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecC
Confidence 99999 5 779999999999999999876322 23456678999999997 478999999
Q ss_pred CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC---CceEEEEeCCCcEEEEeCCcc------eEEEEeec
Q 002086 657 KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN---PSEVLVTSADSRIRILDGLDI------VHKFRGFR 727 (969)
Q Consensus 657 dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~---~~~l~sgs~Dg~I~IwD~~~~------~~~~~~~~ 727 (969)
|+.|++||++...... ......+|...|.+++|+|++ ..+|++++.|++|+||+.... ...+ ..
T Consensus 188 D~~v~lWd~~~~~~~~-----~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~--~~ 260 (316)
T 3bg1_A 188 DNLIKLWKEEEDGQWK-----EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL--HK 260 (316)
T ss_dssp TSBCCEEEECTTSCEE-----EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE--EE
T ss_pred CCeEEEEEeCCCCccc-----eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh--hc
Confidence 9999999997542111 111236789999999999985 368999999999999996541 1222 34
Q ss_pred CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 728 NTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 728 ~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+...|.+++|+|+|++|++++.|+.|+||+...
T Consensus 261 ~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 261 FNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 567899999999999999999999999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-30 Score=317.35 Aligned_cols=242 Identities=24% Similarity=0.413 Sum_probs=201.7
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+.+.+|.+.|++++|+|++++|+||+.|++|+|||+.+++.+.
T Consensus 424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~------------------------------------- 466 (694)
T 3dm0_A 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR------------------------------------- 466 (694)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-------------------------------------
T ss_pred ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee-------------------------------------
Confidence 4578999999999999999999999999999999998776543
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe----ecCCCeEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF----AHNDYVTC 599 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~----~h~~~V~s 599 (969)
.+.+|...|.+++|+| +.+|++|+.|++|+|||+......... +|...|.+
T Consensus 467 ------------------------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 467 ------------------------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522 (694)
T ss_dssp ------------------------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred ------------------------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence 5678999999999999 889999999999999998766554443 68899999
Q ss_pred EEEecCCC--CEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 002086 600 IQFNPMDD--DYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV 676 (969)
Q Consensus 600 v~fsp~~~--~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~ 676 (969)
++|+| ++ ..|++++.|++|++||++++++.. +..|...|++++|+|++++|++|+.||.|+|||+.+++....
T Consensus 523 ~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~--- 598 (694)
T 3dm0_A 523 VRFSP-NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS--- 598 (694)
T ss_dssp EEECS-CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC---
T ss_pred EEEeC-CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE---
Confidence 99999 54 689999999999999999887664 556788999999999999999999999999999998876433
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee-------------------cCCCCeEEEEE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF-------------------RNTSSQISAAF 737 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~-------------------~~~~~V~sl~f 737 (969)
..+...|.+++|+|++ .+++++.++.|+|||........... .+...+++++|
T Consensus 599 ------~~~~~~v~~~~~sp~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 670 (694)
T 3dm0_A 599 ------LEANSVIHALCFSPNR--YWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670 (694)
T ss_dssp ------CBCSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE
T ss_pred ------ecCCCcEEEEEEcCCC--cEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE
Confidence 1234679999999986 45555567779999976543322211 11224789999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcC
Q 002086 738 NADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 738 spdg~~LaSgs~Dg~I~IWdl~ 759 (969)
+|||++|++|+.||.|+||++.
T Consensus 671 spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 671 SADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999985
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-30 Score=283.32 Aligned_cols=254 Identities=18% Similarity=0.260 Sum_probs=211.2
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
..+.+|.+.|++|+|+|++++||+|+.||.|+|||+.++....
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------------- 47 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW------------------------------------- 47 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-------------------------------------
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-------------------------------------
Confidence 4578999999999999999999999999999999987542110
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCC---------cEEEEe-
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETK---------SCLKLF- 591 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~---------~~i~~~- 591 (969)
+....+.+|...|.+++|++ +.+|++|+.||+|++||+.++ +++..+
T Consensus 48 --------------------~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 107 (351)
T 3f3f_A 48 --------------------ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN 107 (351)
T ss_dssp --------------------EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC
T ss_pred --------------------eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec
Confidence 12236778999999999998 789999999999999999987 445544
Q ss_pred ecCCCeEEEEEecCC--CCEEEEEECCCeEEEEeCCCceEEEE--------------ecCCCCEEEEEEccC---CCEEE
Q 002086 592 AHNDYVTCIQFNPMD--DDYFISGSLDAKVRIWSISDRLVVDW--------------TDLHEMVTAACYTPD---GQNAL 652 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~--~~~L~sgs~Dg~I~IWDl~~~~~~~~--------------~~~~~~V~sv~fspd---g~~La 652 (969)
.|...|.+++|+| + +.+|++++.||.|++||+++++.+.. ..+...+.+++|+|+ +.+|+
T Consensus 108 ~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 186 (351)
T 3f3f_A 108 DSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLA 186 (351)
T ss_dssp CCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEE
T ss_pred ccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEE
Confidence 7999999999999 7 89999999999999999987643211 145678999999997 89999
Q ss_pred EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC---ceEEEEeCCCcEEEEeCCcc----------
Q 002086 653 IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP---SEVLVTSADSRIRILDGLDI---------- 719 (969)
Q Consensus 653 sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~---~~l~sgs~Dg~I~IwD~~~~---------- 719 (969)
+++.++.+.+|+...++..... ....|...|++++|+|+++ .+|++++.|+.|++||....
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~------~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 260 (351)
T 3f3f_A 187 VSALEQAIIYQRGKDGKLHVAA------KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESL 260 (351)
T ss_dssp EEETTEEEEEEECTTSCEEEEE------ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------
T ss_pred EecCCCcEEEEccCCCceeeee------ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcc
Confidence 9999999988888777653322 2267899999999999874 68999999999999996542
Q ss_pred ------------------------------------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 720 ------------------------------------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 720 ------------------------------------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
........|...|++++|+|++++|++|+.||.|+||++.+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 261 TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 2223334577889999999999999999999999999999753
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-30 Score=327.18 Aligned_cols=342 Identities=10% Similarity=0.065 Sum_probs=233.8
Q ss_pred cCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHH
Q 002086 335 VGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKE 414 (969)
Q Consensus 335 ~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~ 414 (969)
.||...|.+|++..+...+++|+.|..+..|.......... ..+ ...+..+.|++ ...+.+
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~--~~~----~~~V~~l~fsp-g~~L~S------------ 74 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK--LED----RSAIKEMRFVK-GIYLVV------------ 74 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE--CSS----CCCEEEEEEET-TTEEEE------------
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE--cCC----CCCEEEEEEcC-CCEEEE------------
Confidence 59999999999988888899999999888876432211110 011 23344455554 222111
Q ss_pred HhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCcc
Q 002086 415 QKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLT 494 (969)
Q Consensus 415 ~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~ 494 (969)
...+..+. +|++...+++.++. |.+.|++++|+|++++|++|+.||+|++||+.++++... ...
T Consensus 75 ---~s~D~~v~---------lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~-~i~-- 138 (902)
T 2oaj_A 75 ---INAKDTVY---------VLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF-KLD-- 138 (902)
T ss_dssp ---EETTCEEE---------EEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE-EEC--
T ss_pred ---EECcCeEE---------EEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc-eec--
Confidence 11222222 34566666777775 778999999999999999999999999999998765321 000
Q ss_pred CcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC--cEEEEEe
Q 002086 495 PIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS--HLLLSSS 572 (969)
Q Consensus 495 ~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~--~~L~Sgs 572 (969)
. .+. ....+.+|.+.|++++|+|. ..|++|+
T Consensus 139 ~-------------------------------------------~~~----~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 139 N-------------------------------------------LQK----SSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp C-------------------------------------------HHH----HHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred c-------------------------------------------ccc----cccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 0 000 00123579999999999993 6899999
Q ss_pred CCCcEEEEECCCCcEEEEee-c------------------CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe
Q 002086 573 MDKTVRLWDMETKSCLKLFA-H------------------NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT 633 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~-h------------------~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~ 633 (969)
.||+| +||+.+++++..+. | ...|++++|+| ++.+|++|+.||+|++||+++++++...
T Consensus 172 ~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r 249 (902)
T 2oaj_A 172 EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMAR 249 (902)
T ss_dssp SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence 99999 99999999888773 3 47899999999 8999999999999999999988776531
Q ss_pred c-------------------CCCCEEEEEEcc----CC-CEEEEEeCC-----CcEEEEEcC------------------
Q 002086 634 D-------------------LHEMVTAACYTP----DG-QNALIGSHK-----GSCRLYSIE------------------ 666 (969)
Q Consensus 634 ~-------------------~~~~V~sv~fsp----dg-~~Lasgs~d-----g~I~IwDl~------------------ 666 (969)
. +...|++++|++ ++ .+|++|+.+ ..+.+|++.
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~ 329 (902)
T 2oaj_A 250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYA 329 (902)
T ss_dssp CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHH
T ss_pred eecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhc
Confidence 1 234699999964 33 456666554 266666631
Q ss_pred -----------------------------------------------------CCceeeeeeeeecccccCCCCCeEEE-
Q 002086 667 -----------------------------------------------------DSKLHQLNQVDFQTKKKSSTRKITGF- 692 (969)
Q Consensus 667 -----------------------------------------------------~~~~~~~~~~~~~~~~~~h~~~It~l- 692 (969)
++...... .........|...|+++
T Consensus 330 ~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~-~~~~~~l~~~~~~v~~~~ 408 (902)
T 2oaj_A 330 NPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA-SLFPQNLSWLRPLATTSM 408 (902)
T ss_dssp SCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG-GGSCGGGTTBTTBEEEEE
T ss_pred CccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc-ccCCCcccccCCCeeEEE
Confidence 11000000 00000011122344444
Q ss_pred ---------------------------------EEcCCCCceEEEEeCCCcEEEEeCCcce----EEEEe-------ecC
Q 002086 693 ---------------------------------QFSPSNPSEVLVTSADSRIRILDGLDIV----HKFRG-------FRN 728 (969)
Q Consensus 693 ---------------------------------~fspd~~~~l~sgs~Dg~I~IwD~~~~~----~~~~~-------~~~ 728 (969)
+|+|++ .+|++|+.|++|++||..... ..+.. ..|
T Consensus 409 ~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h 487 (902)
T 2oaj_A 409 AASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK 487 (902)
T ss_dssp EEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred EEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence 456766 799999999999999965421 11111 156
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 729 TSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 729 ~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
...|.+++|+|||++||+|+.||+|+||++.+++
T Consensus 488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred CCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 6789999999999999999999999999998753
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-29 Score=277.87 Aligned_cols=272 Identities=18% Similarity=0.255 Sum_probs=219.0
Q ss_pred ceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 546 PFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
....+.+|.+.|++++|+| +++|++|+.||.|++|++.+++....+ +|...|.+++|+| ++++|++++.|+.|++||
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEE
Confidence 4457889999999999999 889999999999999999999988877 7999999999999 999999999999999999
Q ss_pred CCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 624 ISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 624 l~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
+.+++.+. +..|...|.+++|+|++++|++|+.|+.|++||+++++..... ..|...|.+++|+|++ .+|
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~-~~l 164 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL--------PAHSDPVSAVHFNRDG-SLI 164 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTS-SEE
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe--------cCCCCcEEEEEEcCCC-CEE
Confidence 99887654 5567889999999999999999999999999999988754332 5678899999999988 799
Q ss_pred EEEeCCCcEEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCcee
Q 002086 703 LVTSADSRIRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQ 781 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~ 781 (969)
++++.|+.|++||.......... ..+...+..++|+|++++|++++.||.|++||+.++ +.......+.....
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~ 238 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKY 238 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT------EEEEEECSSCCSSS
T ss_pred EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEEecCCceE
Confidence 99999999999998765443333 234567889999999999999999999999999873 32222221111100
Q ss_pred eeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCCccc
Q 002086 782 CKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSL 861 (969)
Q Consensus 782 ~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~ 861 (969)
+ .......+++.++++++.++.++.|...++.+...+..|...+.+
T Consensus 239 ~----------------------------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 284 (312)
T 4ery_A 239 C----------------------------------IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284 (312)
T ss_dssp C----------------------------------CCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred E----------------------------------EEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEE
Confidence 0 001122356778899999999999998887777766666666665
Q ss_pred cccCCC
Q 002086 862 ISHDPG 867 (969)
Q Consensus 862 is~hP~ 867 (969)
+.+||.
T Consensus 285 ~~~~p~ 290 (312)
T 4ery_A 285 TACHPT 290 (312)
T ss_dssp EEECSS
T ss_pred EeecCc
Confidence 554443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-29 Score=277.22 Aligned_cols=248 Identities=15% Similarity=0.258 Sum_probs=209.6
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
....+|.+.|++++|+|++++|++++ ||.|+|||+.+++....
T Consensus 45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~------------------------------------ 87 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP------------------------------------ 87 (337)
T ss_dssp EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC------------------------------------
T ss_pred ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee------------------------------------
Confidence 33458999999999999999999999 99999999976432110
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc--EEEEe-ecCCCeEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS--CLKLF-AHNDYVTCI 600 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~--~i~~~-~h~~~V~sv 600 (969)
.......+|...|.+++|+| +++|++++.|+.|++||+.+++ ....+ .|...|.++
T Consensus 88 --------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~ 147 (337)
T 1gxr_A 88 --------------------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147 (337)
T ss_dssp --------------------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE
T ss_pred --------------------eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEE
Confidence 00012237899999999999 7899999999999999999887 33333 788999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCceEEEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
+|+| ++.+|++++.||.|++||+++++..... .|...|.+++|+|++++|++++.||.|++||+++++....
T Consensus 148 ~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------ 220 (337)
T 1gxr_A 148 AISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ------ 220 (337)
T ss_dssp EECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE------
T ss_pred EECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee------
Confidence 9999 8999999999999999999998766544 5778999999999999999999999999999998876543
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
..+...+.+++|+|++ .++++++.++.|++||...... .....+...+.+++|+|++++|++++.||.|++|++.
T Consensus 221 ---~~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 221 ---HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ---EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ---ecCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 2356789999999998 7999999999999999776543 3455677889999999999999999999999999998
Q ss_pred CC
Q 002086 760 EH 761 (969)
Q Consensus 760 t~ 761 (969)
++
T Consensus 296 ~~ 297 (337)
T 1gxr_A 296 YG 297 (337)
T ss_dssp TC
T ss_pred CC
Confidence 74
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-31 Score=304.36 Aligned_cols=302 Identities=13% Similarity=0.146 Sum_probs=226.8
Q ss_pred ccccceeeeEecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
.+....+.....+|...|+||+|+| ++++||+|+.||+|+|||+.+++...
T Consensus 105 ~~~~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~---------------------------- 156 (435)
T 4e54_B 105 TLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT---------------------------- 156 (435)
T ss_dssp TTTTTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE----------------------------
T ss_pred cccceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee----------------------------
Confidence 3444556667889999999999999 56799999999999999987643221
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEee-
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFA- 592 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~- 592 (969)
+..+.+|.+.|++|+|+| +++|++|+.||+|+|||+.++.......
T Consensus 157 -------------------------------~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 205 (435)
T 4e54_B 157 -------------------------------FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS 205 (435)
T ss_dssp -------------------------------EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC
T ss_pred -------------------------------EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc
Confidence 123568999999999997 6899999999999999998776555442
Q ss_pred --cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCc
Q 002086 593 --HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 593 --h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~ 669 (969)
+...+.+++|+| ++.+|++|+.||.|++||++...+..+..|...|++++|+|++. +|++|+.|+.|+|||++..+
T Consensus 206 ~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 206 DTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp SSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred CCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence 345688999999 99999999999999999999887777888899999999999886 77889999999999998866
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEE--eecC----CCCeEEEEEeCCCCE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR--GFRN----TSSQISAAFNADGKY 743 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~--~~~~----~~~V~sl~fspdg~~ 743 (969)
..... .....|...|++++|+|++ .+|++++.|+.|+|||......... .+.+ ...+..+.|+|++.+
T Consensus 285 ~~~~~-----~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (435)
T 4e54_B 285 GKASF-----LYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNL 358 (435)
T ss_dssp SSSCC-----SBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSC
T ss_pred ccceE-----EEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCE
Confidence 43221 1125688999999999988 7999999999999999765433222 2211 122345677777777
Q ss_pred EEEEeC------------CCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEccccc
Q 002086 744 IISASE------------DSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAK 811 (969)
Q Consensus 744 LaSgs~------------Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~ 811 (969)
+++++. ++.|++||+.++ +.+..+...+..
T Consensus 359 ~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g------~~~~~l~~~~~~-------------------------------- 400 (435)
T 4e54_B 359 IVVGRYPDPNFKSCTPYELRTIDVFDGNSG------KMMCQLYDPESS-------------------------------- 400 (435)
T ss_dssp EEEECCCCTTSCCSSTTCCCCEEEECSSSC------CEEEEECCSSCC--------------------------------
T ss_pred EEEEEcCCCCeEEEEecCCCEEEEEECCCC------cEEEEEeCCCCC--------------------------------
Confidence 776642 357999998873 322222111110
Q ss_pred ccCCCCcccccCCCCCCccccCCCCccccCCCCCC
Q 002086 812 RISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTN 846 (969)
Q Consensus 812 ~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~ 846 (969)
.......++|++.++++++ +..+.+|....+
T Consensus 401 ---~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 401 ---GISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp ---CCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred ---cEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 0011234789998888765 678999987655
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=314.02 Aligned_cols=311 Identities=18% Similarity=0.252 Sum_probs=239.4
Q ss_pred ceeeeEecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
+++...|++|.+.|++|+|++++ .+|+||+.|++|+||++.+....
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~--------------------------------- 418 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA--------------------------------- 418 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC---------------------------------
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc---------------------------------
Confidence 34556799999999999999865 79999999999999998642110
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCe
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYV 597 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V 597 (969)
.......+.+|...|.+++|++ +++|++|+.|++|+|||+.++.++..+ +|...|
T Consensus 419 -----------------------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v 475 (694)
T 3dm0_A 419 -----------------------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDV 475 (694)
T ss_dssp -----------------------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred -----------------------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCE
Confidence 0112346789999999999999 899999999999999999999988776 899999
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe----cCCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCCCcee
Q 002086 598 TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT----DLHEMVTAACYTPDG--QNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 598 ~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~----~~~~~V~sv~fspdg--~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
.+++|+| ++.+|++|+.|++|++||+......... .|...|.+++|+|++ ..|++|+.|++|++||+++.+..
T Consensus 476 ~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 476 LSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554 (694)
T ss_dssp EEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred EEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence 9999999 9999999999999999999876655443 466789999999987 58999999999999999987754
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
.. ..+|...|++++|+|++ .+|++++.|+.|++||..+....... .+...+.+++|+|++.+|++++ |+
T Consensus 555 ~~--------~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~-~~ 623 (694)
T 3dm0_A 555 ST--------LAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSL-EANSVIHALCFSPNRYWLCAAT-EH 623 (694)
T ss_dssp EE--------ECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECC-BCSSCEEEEEECSSSSEEEEEE-TT
T ss_pred EE--------EcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEe-cCCCcEEEEEEcCCCcEEEEEc-CC
Confidence 33 26789999999999988 89999999999999998876654443 4556799999999998888776 56
Q ss_pred cEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccc
Q 002086 752 QVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPA 831 (969)
Q Consensus 752 ~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~ 831 (969)
.|+|||+.+++. +........... .... . .+ . ...+..........+||++.++++
T Consensus 624 ~i~iwd~~~~~~------~~~~~~~~~~~~---~~~~--~----~~----~-----~~~~~~~~~~~~l~~spdg~~l~s 679 (694)
T 3dm0_A 624 GIKIWDLESKSI------VEDLKVDLKAEA---EKAD--N----SG----P-----AATKRKVIYCTSLNWSADGSTLFS 679 (694)
T ss_dssp EEEEEETTTTEE------EEEECCCCC----------------------------------CCCCEEEEEECTTSSEEEE
T ss_pred CEEEEECCCCCC------hhhhcccccccc---cccc--c----cc----c-----ccCCceeEEeeeEEEcCCCCEEEE
Confidence 699999997432 221111111000 0000 0 00 0 000000001124568999999999
Q ss_pred cCCCCccccCCC
Q 002086 832 GHSRRLLPPLPK 843 (969)
Q Consensus 832 ~~~~~~L~~~~~ 843 (969)
++.++.+..|..
T Consensus 680 gs~Dg~i~iW~i 691 (694)
T 3dm0_A 680 GYTDGVIRVWGI 691 (694)
T ss_dssp EETTSEEEEEEC
T ss_pred EcCCCeEEEEec
Confidence 999999999964
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=298.38 Aligned_cols=252 Identities=13% Similarity=0.149 Sum_probs=195.6
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.++.|.+.|++++|+|++++||+|+.|+.|+|||+.++....
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~-------------------------------------- 47 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKH-------------------------------------- 47 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEE--------------------------------------
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEE--------------------------------------
Confidence 345678899999999999999999999999999998653111
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc----EEEEeecCCCeEEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS----CLKLFAHNDYVTCI 600 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~----~i~~~~h~~~V~sv 600 (969)
+..+.+|...|.+++|+| +++|++++.|++|++||+.+++ ......|...|.++
T Consensus 48 ---------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 48 ---------------------ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV 106 (377)
T ss_dssp ---------------------CCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE
T ss_pred ---------------------EEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE
Confidence 114567999999999999 7899999999999999999887 33444899999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCce----EEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee--
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDRL----VVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL-- 673 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~-- 673 (969)
+|+| ++.+|++++.|+.|++||++++. ...+.. |...|.+++|+|++++|++++.|+.|++||+........
T Consensus 107 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 107 RWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred EECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 9999 99999999999999999999876 445555 789999999999999999999999999999964432110
Q ss_pred --------eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE----EEEeecCCCCeEEEEEeCCC
Q 002086 674 --------NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH----KFRGFRNTSSQISAAFNADG 741 (969)
Q Consensus 674 --------~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~----~~~~~~~~~~V~sl~fspdg 741 (969)
......... .|...|.+++|+|++ .+|++++.|+.|++||...... ......|...|.+++|+|++
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp SCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred ccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 000111222 788999999999998 7999999999999999765433 33344567789999999999
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 002086 742 KYIISASEDSQVYVWKREE 760 (969)
Q Consensus 742 ~~LaSgs~Dg~I~IWdl~t 760 (969)
++|++|+.|+.+ +|+...
T Consensus 264 ~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EEEEEESSSSEE-EECCCC
T ss_pred CEEEEEcCCcEE-EEEeCC
Confidence 999998866555 777764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=289.22 Aligned_cols=258 Identities=17% Similarity=0.313 Sum_probs=210.6
Q ss_pred ccccceeeeEecc-----cccCEEEEEEeCC----CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCC
Q 002086 437 DLSALHLCQEIQA-----HEGSIWTIKFSLD----ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKA 507 (969)
Q Consensus 437 dl~~~~l~~~L~g-----H~~~I~~l~fSpD----g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~ 507 (969)
++...+.+..++. |.+.|++++|+|+ +++|++|+.||.|+|||+.+++.+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-------------------- 109 (366)
T 3k26_A 50 ECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK-------------------- 109 (366)
T ss_dssp EECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE--------------------
T ss_pred EcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee--------------------
Confidence 3343344444443 6688999999999 6799999999999999998765543
Q ss_pred ccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCC
Q 002086 508 SSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETK 585 (969)
Q Consensus 508 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~ 585 (969)
.+.+|...|.+++|+| +.+|++|+.||.|++||+.++
T Consensus 110 -----------------------------------------~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 148 (366)
T 3k26_A 110 -----------------------------------------HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148 (366)
T ss_dssp -----------------------------------------EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred -----------------------------------------eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence 5667999999999998 589999999999999999999
Q ss_pred cEEEEe----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-----------------------------E
Q 002086 586 SCLKLF----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-----------------------------W 632 (969)
Q Consensus 586 ~~i~~~----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-----------------------------~ 632 (969)
+.+..+ .|...|.+++|+| ++.+|++++.||.|++||+++++... .
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred eEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 998887 6999999999999 99999999999999999998764332 1
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee------eeeeecccccCCCCCeEEEEEcCC--CCceEEE
Q 002086 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL------NQVDFQTKKKSSTRKITGFQFSPS--NPSEVLV 704 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~------~~~~~~~~~~~h~~~It~l~fspd--~~~~l~s 704 (969)
..+...|.+++|+ +++|++++.||.|++||+.+...... ...........|...|.+++|+|+ + .+|++
T Consensus 228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~ 304 (366)
T 3k26_A 228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLAL 304 (366)
T ss_dssp SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEE
T ss_pred cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEE
Confidence 2277889999999 77999999999999999987654110 000112223567888999999998 6 89999
Q ss_pred EeCCCcEEEEeCCcc------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 705 TSADSRIRILDGLDI------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
++.|+.|++||.... ...+..+.+...|.+++|+|++++|++++.||.|+|||+.
T Consensus 305 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999997652 2244445457899999999999999999999999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=275.34 Aligned_cols=289 Identities=19% Similarity=0.310 Sum_probs=230.9
Q ss_pred ccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
...++.++|.+|.+.|++++| +++++|++|+.||.|+|||+.+++....+..+...+..+.+.+........+....
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-- 82 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM-- 82 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSC--
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCe--
Confidence 456788899999999999999 99999999999999999999999888877766666666665554332221111100
Q ss_pred cccccCCCCCCCCcccccceeeec----CCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ec
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSL----SEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AH 593 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~----~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h 593 (969)
..+|.+ ..+++..+.+|...|.++.|. +++|++++.|+.|++|| .++.+..+ .|
T Consensus 83 ------------------i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~ 141 (313)
T 3odt_A 83 ------------------INGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAH 141 (313)
T ss_dssp ------------------EEEEETTCCTTSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred ------------------EEEEEeeecCCCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccC
Confidence 011111 234566788999999999994 68999999999999999 55555555 79
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
...|.+++|.|.++++|++++.||.|++||... ....+.. +...+.+++|+|++. +++++.||.|++||+++++...
T Consensus 142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~ 219 (313)
T 3odt_A 142 NASVWDAKVVSFSENKFLTASADKTIKLWQNDK-VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR 219 (313)
T ss_dssp SSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE
T ss_pred CCceeEEEEccCCCCEEEEEECCCCEEEEecCc-eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh
Confidence 999999999987889999999999999999433 3333344 778999999999988 9999999999999999887654
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
.. ..|...|++++|+|++ .|++++.|+.|++||............+...|.+++|+|+++ +++++.||.
T Consensus 220 ~~--------~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~ 288 (313)
T 3odt_A 220 TY--------EGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNL 288 (313)
T ss_dssp EE--------ECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSC
T ss_pred hh--------hcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCc
Confidence 32 5688999999999987 599999999999999877665555556677899999999998 667999999
Q ss_pred EEEEEcCCCCcc
Q 002086 753 VYVWKREEHRNA 764 (969)
Q Consensus 753 I~IWdl~t~~~~ 764 (969)
|++|++.+++..
T Consensus 289 i~iw~~~~~~~~ 300 (313)
T 3odt_A 289 VRIFSQEKSRWA 300 (313)
T ss_dssp EEEEESCGGGCC
T ss_pred EEEEeCCCCcee
Confidence 999999985443
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-29 Score=278.59 Aligned_cols=251 Identities=15% Similarity=0.243 Sum_probs=213.3
Q ss_pred cccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 438 LSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 438 l~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
+...+.+..+.+|.+.|++++|+|++++|++++.||.|+|||+.+++.+.
T Consensus 61 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------------------------------ 110 (369)
T 3zwl_B 61 SLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVA------------------------------ 110 (369)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE------------------------------
T ss_pred CCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE------------------------------
Confidence 33344556678999999999999999999999999999999998776554
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC-----CcEEEEECCCCcE----
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD-----KTVRLWDMETKSC---- 587 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D-----gtV~IWDl~t~~~---- 587 (969)
.+. |...|.+++|++ +.+|++++.+ +.|++||+..+..
T Consensus 111 -------------------------------~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 111 -------------------------------TWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp -------------------------------EEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred -------------------------------Eee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence 222 778899999999 8999999999 9999999976532
Q ss_pred --------EEEeecCC--CeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEE-EEecCCCCEEEEEEccCCCEEEEEe
Q 002086 588 --------LKLFAHND--YVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVV-DWTDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 588 --------i~~~~h~~--~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~-~~~~~~~~V~sv~fspdg~~Lasgs 655 (969)
.....|.. .+.+++|+| ++.+|++++.||.|++||+.+ ...+ .+..+...|.+++|+|++.+|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 159 TKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp EEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence 12234555 999999999 999999999999999999998 4544 4556788999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC--------------cEEEEeCCcceE
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS--------------RIRILDGLDIVH 721 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg--------------~I~IwD~~~~~~ 721 (969)
.||.|++||+.+++..... .+...+..++|+|++ .++++++.++ .|++||......
T Consensus 238 ~d~~i~v~d~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 307 (369)
T 3zwl_B 238 RDTNSFLVDVSTLQVLKKY---------ETDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307 (369)
T ss_dssp TTSEEEEEETTTCCEEEEE---------ECSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred CCceEEEEECCCCceeeee---------cCCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence 9999999999988765442 256789999999998 7888888887 899999877666
Q ss_pred EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 722 KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 722 ~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
......|...|.+++|+|++++|++++.||.|+||+++++
T Consensus 308 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 308 IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 6666667889999999999999999999999999999874
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=289.75 Aligned_cols=299 Identities=17% Similarity=0.205 Sum_probs=227.0
Q ss_pred cccccceeeeEecccccCEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeec--CCccCcccccccCCCCCccCCC
Q 002086 436 KDLSALHLCQEIQAHEGSIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSE--GNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~--~~~~~v~~~~~~~~~~~~~~~g 512 (969)
+++..+++...+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....+. ++...+..+.+.+.+....+.+
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence 3556777888999999999999999999 899999999999999999887766554 4555555555544211111111
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccC---CCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEE
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGH---LDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCL 588 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH---~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i 588 (969)
. ......+|......+..+..| ...|.+++|++ +.+|++|+.|+.|++||+. ++++
T Consensus 138 ~-------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~ 197 (383)
T 3ei3_B 138 S-------------------IRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEI 197 (383)
T ss_dssp E-------------------TTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEE
T ss_pred e-------------------CCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEE
Confidence 0 011224555555556566544 48899999999 8999999999999999995 5555
Q ss_pred EEe-ecCCCeEEEEEecCCCC-EEEEEECCCeEEEEeCCC----ceEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEE
Q 002086 589 KLF-AHNDYVTCIQFNPMDDD-YFISGSLDAKVRIWSISD----RLVVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCR 661 (969)
Q Consensus 589 ~~~-~h~~~V~sv~fsp~~~~-~L~sgs~Dg~I~IWDl~~----~~~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~ 661 (969)
..+ .|...|.+++|+| ++. +|++++.|+.|++||+++ +.++....+...|.+++|+| ++.+|++++.|+.|+
T Consensus 198 ~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~ 276 (383)
T 3ei3_B 198 FKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIR 276 (383)
T ss_dssp EEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred EEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence 555 7999999999999 777 999999999999999987 66777778999999999999 999999999999999
Q ss_pred EEEcCCCceeeeeeeeecccccCC----------CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce--EEEEeecCC
Q 002086 662 LYSIEDSKLHQLNQVDFQTKKKSS----------TRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV--HKFRGFRNT 729 (969)
Q Consensus 662 IwDl~~~~~~~~~~~~~~~~~~~h----------~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~~~~ 729 (969)
+||+++++......... .....+ ...+..++|+|++ .+ +++.|+.|++||..... ..+..+.+.
T Consensus 277 iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~ 352 (383)
T 3ei3_B 277 VYSSYDWSKPDQIIIHP-HRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGLVHQLRDPNAA 352 (383)
T ss_dssp EEETTBTTSCSEEEECC-BCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCEEEEECBTTBC
T ss_pred EEECCCCcccccccccc-ccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCceeeeecCCCCC
Confidence 99999877543322110 000112 2345556777766 33 77899999999976544 444444456
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 730 SSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 730 ~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..+..++|+|++++|++|+ ||.|+|||+++
T Consensus 353 ~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 353 GIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp SCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 6677789999999999997 99999999975
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=296.13 Aligned_cols=258 Identities=15% Similarity=0.212 Sum_probs=205.2
Q ss_pred cceeeeEe-cccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 440 ALHLCQEI-QAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 440 ~~~l~~~L-~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
..+++.+| .+|.+.|++|+|+| ++++||||+.||+|+|||+.+.+....
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~----------------------------- 101 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV----------------------------- 101 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-----------------------------
T ss_pred cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-----------------------------
Confidence 35677788 99999999999999 999999999999999999875210000
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC---CCcEEEEee-
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME---TKSCLKLFA- 592 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~---t~~~i~~~~- 592 (969)
.+....+ +|...|.+++|++ +.+|++|+.||+|++||+. +++++..+.
T Consensus 102 --------------------------~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 154 (437)
T 3gre_A 102 --------------------------YSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC 154 (437)
T ss_dssp --------------------------CSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE
T ss_pred --------------------------cceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc
Confidence 0001122 5999999999999 8899999999999999994 555554331
Q ss_pred ------------cCCCeEEEE--EecCCCCEEEEEECCCeEEEEeCCCceEEEEec---CCCCEEEEEEccCCCEEEEEe
Q 002086 593 ------------HNDYVTCIQ--FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD---LHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 593 ------------h~~~V~sv~--fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---~~~~V~sv~fspdg~~Lasgs 655 (969)
+...+.++. +++ ++.+|++++.|+.|++||+++++.+..+. |...|++++|+|++.+|++|+
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 233 (437)
T 3gre_A 155 ECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT 233 (437)
T ss_dssp EEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred ceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc
Confidence 566777777 446 78899999999999999999987765443 578999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC---CCceEEEEeCCCcEEEEeCCcce--EEEEeec---
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS---NPSEVLVTSADSRIRILDGLDIV--HKFRGFR--- 727 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd---~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~~--- 727 (969)
.||.|++||++.++...... ..|...|.+++|+|. +..+|++++.|+.|++||..... ..+..+.
T Consensus 234 ~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (437)
T 3gre_A 234 TRGIIDIWDIRFNVLIRSWS-------FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQP 306 (437)
T ss_dssp TTSCEEEEETTTTEEEEEEB-------CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCC
T ss_pred CCCeEEEEEcCCccEEEEEe-------cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCC
Confidence 99999999999877654321 256678999977763 22689999999999999976543 3333221
Q ss_pred ---------------------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 728 ---------------------NTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 728 ---------------------~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+...|.+++|+ ++++|++|+.||.|++||+.+++
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp CGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred ccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 55568899999 88999999999999999999843
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-31 Score=300.65 Aligned_cols=337 Identities=13% Similarity=0.218 Sum_probs=245.9
Q ss_pred CCcceeeeecccccc-cccCC----------CCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCc
Q 002086 337 HSPVVKELMRRENVN-RINDS----------AGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPL 405 (969)
Q Consensus 337 Hs~~V~~l~~~~~~~-~~~t~----------s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l 405 (969)
+...|.++++..+.. .++++ +.|..+..|........+. ...+ .......++.|+++...++..
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~-- 85 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--IASL-QVDSKFNDLDWSHNNKIIAGA-- 85 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--SCCC-CCSSCEEEEEECSSSSCEEEE--
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--EEEE-ecCCceEEEEECCCCCeEEEE--
Confidence 345678888766543 66666 6677777665432221111 1111 123445555566555442221
Q ss_pred ccchHHHHHHhhccccCcceEEEccCCCccccccc----ceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEec
Q 002086 406 LGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSA----LHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEV 480 (969)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~----~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl 480 (969)
..++.+.++ ++.. .+.+..+.+|.+.|++++|+|+ +++|++++.|+.|+|||+
T Consensus 86 -------------~~dg~v~vw---------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 86 -------------LDNGSLELY---------STNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp -------------ESSSCEEEE---------CCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred -------------ccCCeEEEe---------ecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 122233322 3333 3477889999999999999998 899999999999999999
Q ss_pred ccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEE
Q 002086 481 QECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDL 560 (969)
Q Consensus 481 ~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l 560 (969)
.+++..... . ....+..+.+|...|.++
T Consensus 144 ~~~~~~~~~-----------------------------~-----------------------~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 144 NKCTESPSN-----------------------------Y-----------------------TPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp TTTSSCTTT-----------------------------C-----------------------CCBCCCCSCCSSCCCCEE
T ss_pred CCCcccccc-----------------------------c-----------------------cccccccccCCCCCeeEE
Confidence 865410000 0 000001235689999999
Q ss_pred EecC--CcEEEEEeCCCcEEEEECCCCcEEEEee-c------CCCeEEEEEecCCCCEEEEEECCC---eEEEEeCCCc-
Q 002086 561 SWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFA-H------NDYVTCIQFNPMDDDYFISGSLDA---KVRIWSISDR- 627 (969)
Q Consensus 561 ~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h------~~~V~sv~fsp~~~~~L~sgs~Dg---~I~IWDl~~~- 627 (969)
+|++ +.+|++++.|+.|++||+.+++++..+. + ...|.+++|+|....+|++++.|+ .|++||++++
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 9998 4799999999999999999999988873 3 789999999993347999999999 9999999985
Q ss_pred eEEE-Ee-cCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 628 LVVD-WT-DLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 628 ~~~~-~~-~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
..+. +. .|...|.+++|+| ++.+|++++.||.|++||+.+++..... ..|...|.+++|+|+++.+|++
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF--------PARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE--------ECSSSCCCCEEECTTCTTEEEE
T ss_pred CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee--------cCCCCceEEEEECCCCCCEEEE
Confidence 4443 33 5888999999999 9999999999999999999988765432 4678899999999998789999
Q ss_pred EeCCCcEEEEeCCcceEEEE----------------ee-------------------cCCCCeEEEEEeCCCCEEEEEeC
Q 002086 705 TSADSRIRILDGLDIVHKFR----------------GF-------------------RNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~~~~~~----------------~~-------------------~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
++.|+.|++||+........ .+ .+...+.+++|+|||++|++++.
T Consensus 324 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~ 403 (416)
T 2pm9_A 324 ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD 403 (416)
T ss_dssp CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT
T ss_pred EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC
Confidence 99999999999654321100 00 03456778999999999999999
Q ss_pred CCcEEEEEcCC
Q 002086 750 DSQVYVWKREE 760 (969)
Q Consensus 750 Dg~I~IWdl~t 760 (969)
|+.|+||++.+
T Consensus 404 d~~v~~w~~~~ 414 (416)
T 2pm9_A 404 GKGVSITNPKI 414 (416)
T ss_dssp SSCBCCBCCCC
T ss_pred CCeEEEEEecc
Confidence 99999999986
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=291.51 Aligned_cols=324 Identities=12% Similarity=0.146 Sum_probs=239.1
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.|.+.|++++|+|++++|++|+.||.|+|||+.+...
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~------------------------------------------- 101 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN------------------------------------------- 101 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------------------------------------------
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------------------------------------------
Confidence 5899999999999999999999999999999875110
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCc------EEEE----eecCCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKS------CLKL----FAHNDY 596 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~------~i~~----~~h~~~ 596 (969)
..+.+..+.+|...|.+++|+| +.+|++++.|++|++||+.+++ .... ..|...
T Consensus 102 --------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 102 --------------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp --------------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred --------------cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 0112346778999999999998 5899999999999999999886 3322 378999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-------CCCEEEEEEccCC-CEEEEEeCCC---cEEEEEc
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-------HEMVTAACYTPDG-QNALIGSHKG---SCRLYSI 665 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-------~~~V~sv~fspdg-~~Lasgs~dg---~I~IwDl 665 (969)
|.+++|+|..+.+|++++.||.|++||+++++.+..... ...|.+++|+|++ .+|++++.++ .|++||+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 999999993378999999999999999999887665544 6789999999997 6899999998 9999999
Q ss_pred CCCceeeeeeeeeccccc-CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC-CE
Q 002086 666 EDSKLHQLNQVDFQTKKK-SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG-KY 743 (969)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~-~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg-~~ 743 (969)
++.... ..... .|...|.+++|+|.++.+|++++.|+.|++||............|...|.+++|+|++ .+
T Consensus 248 ~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 248 RNANTP-------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL 320 (416)
T ss_dssp TSTTSC-------SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred CCCCCC-------cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence 986321 11124 6889999999999444899999999999999987766655566677889999999999 89
Q ss_pred EEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCc-cccc
Q 002086 744 IISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPT-SATS 822 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~-~~~~ 822 (969)
|++++.||.|+||++.+............ ........+... -..+..+..... +.+ ....-...++ ..++
T Consensus 321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~ 391 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQNLTNTLDEQETET----KQQESETDFWNN--VSREESKEKPSV--FHL-QAPTWYGEPSPAAHW 391 (416)
T ss_dssp EEECCSSSEEEEEESCCCCCSSCC----------------------------CCSCCCS--SCC-CCCSTTCCCSCCCEE
T ss_pred EEEEecCCcEEEEEccCCCCCcccccccc----cccCCccccccc--cccccccccccc--ccc-cCCccccCCccceEE
Confidence 99999999999999998654433211000 000000000000 000000100011 111 1111112233 6789
Q ss_pred CCCCCCccccCCCCccccCCCCC
Q 002086 823 SPTKEGSPAGHSRRLLPPLPKKT 845 (969)
Q Consensus 823 SP~~~~i~~~~~~~~L~~~~~~s 845 (969)
||+|.++++++.++.+.+|...+
T Consensus 392 s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 392 AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ETTTEEECBCTTSSCBCCBCCCC
T ss_pred eeCCeEEEEeCCCCeEEEEEecc
Confidence 99999999999999999997654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-30 Score=288.93 Aligned_cols=295 Identities=13% Similarity=0.166 Sum_probs=228.2
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce------EEEeecCCccCcccccccCC----C---CCc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE------VMSMSEGNLTPIHPSLCNSS----D---KAS 508 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~------~l~~~~~~~~~v~~~~~~~~----~---~~~ 508 (969)
.....+.+|.+.|++|+|+| ++|++|+.||+|+|||+.+++ .+..+.++...+..+.+.+. . ...
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45677899999999999998 899999999999999999887 56666666666665555543 2 111
Q ss_pred cCCCCCCCCCcccccCCCCCCCCcccccceeeecCC-Cc-----eeEeccC-----CCCEEEEEec----C-CcE-EEEE
Q 002086 509 SLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSE-KP-----FCSFIGH-----LDDVLDLSWS----R-SHL-LLSS 571 (969)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-k~-----~~~l~gH-----~~~I~~l~fs----~-~~~-L~Sg 571 (969)
...+. .....+|.... +. +..+.+| ...|.+++|+ + +.+ |+++
T Consensus 85 ~s~~~--------------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 144 (397)
T 1sq9_A 85 ATTSF--------------------SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT 144 (397)
T ss_dssp EEEET--------------------TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE
T ss_pred EEEcC--------------------CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE
Confidence 11110 01112333322 22 6778888 5999999999 8 788 9999
Q ss_pred eCCCcEEEEECCC------CcEEE-----Ee--------ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 572 SMDKTVRLWDMET------KSCLK-----LF--------AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 572 s~DgtV~IWDl~t------~~~i~-----~~--------~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
+.||.|++||+.+ ++.+. .+ .|...|.+++|+| ++ +|++++.||.|++||+++++.+..
T Consensus 145 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~ 222 (397)
T 1sq9_A 145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYN 222 (397)
T ss_dssp ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEE
Confidence 9999999999988 55443 33 3789999999999 78 999999999999999998877655
Q ss_pred ec----C---CCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeee-----cccccCCCCCeEEEEEcCC
Q 002086 633 TD----L---HEMVTAACYTPDGQNALIGSHK---GSCRLYSIEDSKLHQLNQVDF-----QTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 633 ~~----~---~~~V~sv~fspdg~~Lasgs~d---g~I~IwDl~~~~~~~~~~~~~-----~~~~~~h~~~It~l~fspd 697 (969)
+. | ...|.+++|+|++.+|++++.| |.|++||+.+++......... ......|...|.+++|+|+
T Consensus 223 ~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 302 (397)
T 1sq9_A 223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 302 (397)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC
Confidence 44 5 8899999999999999999999 999999999887654321100 0000117889999999998
Q ss_pred CCceEEEEeCCCcEEEEeCCcceEEEEee------cC---------------CCCeEEEEEeCCC----------CEEEE
Q 002086 698 NPSEVLVTSADSRIRILDGLDIVHKFRGF------RN---------------TSSQISAAFNADG----------KYIIS 746 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~------~~---------------~~~V~sl~fspdg----------~~LaS 746 (969)
+ .+|++++.|+.|++||........... .+ ...|.+++|+|+| ++|++
T Consensus 303 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 303 G-ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC 381 (397)
T ss_dssp S-SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred C-CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence 8 799999999999999987665544444 45 7889999999998 79999
Q ss_pred EeCCCcEEEEEcCCC
Q 002086 747 ASEDSQVYVWKREEH 761 (969)
Q Consensus 747 gs~Dg~I~IWdl~t~ 761 (969)
++.||.|+||++.++
T Consensus 382 ~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 382 VCLDRSIRWFREAGG 396 (397)
T ss_dssp EETTTEEEEEEEEC-
T ss_pred ecCCCcEEEEEcCCC
Confidence 999999999999873
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=295.23 Aligned_cols=303 Identities=19% Similarity=0.252 Sum_probs=228.3
Q ss_pred hhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHH
Q 002086 332 EKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQRE 411 (969)
Q Consensus 332 ~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~ 411 (969)
..+.||...|+++++..+...+++++.|..+..|.... ......++.....+..+.|+++...++..
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-----~~~~~~~~~h~~~v~~~~~s~~g~~las~-------- 126 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT-----SQKTHAIKLHCPWVMECAFAPNGQSVACG-------- 126 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT-----TEEEEEEECCCTTCCCCEECTTSSEEEEC--------
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CccceEEecCCCCEEEEEECCCCCEEEEe--------
Confidence 55689999999999888888899999999888876432 21112222222333444555555443322
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
..+..+.++...... ..-........+.+|.+.|.++.|+|+ +.+|+||+.|++|+|||+.+++.+..+.
T Consensus 127 -------~~d~~v~iw~~~~~~--~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 197 (380)
T 3iz6_a 127 -------GLDSACSIFNLSSQA--DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFG 197 (380)
T ss_dssp -------CSSSCCEEEECCCCS--SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEEC
T ss_pred -------eCCCcEEEEECCCCc--cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEee
Confidence 123333333322111 111223345678999999999999997 4579999999999999999887765332
Q ss_pred CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEE
Q 002086 491 GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLL 568 (969)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L 568 (969)
.. ...+|...|.++.|++ +++|
T Consensus 198 ~~--------------------------------------------------------~~~~h~~~v~~~~~~~~~~~~l 221 (380)
T 3iz6_a 198 SE--------------------------------------------------------FPSGHTADVLSLSINSLNANMF 221 (380)
T ss_dssp CC--------------------------------------------------------SSSSCCSCEEEEEECSSSCCEE
T ss_pred cc--------------------------------------------------------cCCCCccCeEEEEeecCCCCEE
Confidence 10 1246899999999986 6899
Q ss_pred EEEeCCCcEEEEECC-CCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--------CC
Q 002086 569 LSSSMDKTVRLWDME-TKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--------EM 638 (969)
Q Consensus 569 ~Sgs~DgtV~IWDl~-t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--------~~ 638 (969)
++|+.|++|++||++ .++++..+ +|...|.+++|+| ++.+|++|+.||+|++||++++..+..+... ..
T Consensus 222 ~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
T 3iz6_a 222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300 (380)
T ss_dssp EEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred EEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCc
Confidence 999999999999998 44666655 8999999999999 9999999999999999999998877654332 24
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 639 VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 639 V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
|++++|+|+|++|++|+.||.|++||+..++..... ......|...|++++|+|++ .+|++|+.|++|+||+...
T Consensus 301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~----~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL----GTLQNSHEGRISCLGLSSDG-SALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE----CCSCSSCCCCCCEEEECSSS-SEEEEECTTSCEEEEECCS
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE----ecccCCCCCceEEEEECCCC-CEEEEeeCCCCEEEEecCC
Confidence 899999999999999999999999999887754332 12225789999999999998 7999999999999999653
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=291.15 Aligned_cols=253 Identities=15% Similarity=0.148 Sum_probs=207.1
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
++...+....+..| ..+....|++++++||+|+.|+.|+|||+.+++...
T Consensus 84 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------------- 133 (420)
T 3vl1_A 84 NTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE----------------------------- 133 (420)
T ss_dssp ECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE-----------------------------
T ss_pred EecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee-----------------------------
Confidence 44444455556666 555666789999999999999999999998765543
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHN 594 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~ 594 (969)
.+.+|.+.|.+++|+| +.+|++|+.|++|++||+.+++++..+ +|.
T Consensus 134 --------------------------------~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 181 (420)
T 3vl1_A 134 --------------------------------IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR 181 (420)
T ss_dssp --------------------------------ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS
T ss_pred --------------------------------ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC
Confidence 3457999999999999 789999999999999999999888777 699
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec----CCCCEEEEE---------------------EccCCC
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD----LHEMVTAAC---------------------YTPDGQ 649 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~----~~~~V~sv~---------------------fspdg~ 649 (969)
..|.+++|+| ++.+|++++.||.|++||+++++.+..+. +...+.+++ |+|+++
T Consensus 182 ~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (420)
T 3vl1_A 182 ATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK 260 (420)
T ss_dssp SCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE
T ss_pred CcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC
Confidence 9999999999 89999999999999999999988776554 334455544 578899
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---eEEEEee
Q 002086 650 NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---VHKFRGF 726 (969)
Q Consensus 650 ~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~ 726 (969)
+|++|+.||.|++||+++++..... ...|...|.+++|+|++..+|++++.|+.|++||.... ...+..+
T Consensus 261 ~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 261 YVIAGHVSGVITVHNVFSKEQTIQL-------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN 333 (420)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEE-------CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES
T ss_pred EEEEEcCCCeEEEEECCCCceeEEc-------ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc
Confidence 9999999999999999988754332 14678899999999998559999999999999997653 3344332
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 727 RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+...+.++ +.+++++|++++.||.|++|++..+
T Consensus 334 -~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 334 -EGTPINNV-YFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -TTSCEEEE-EEETTEEEEEETTTEEEEEEEECCT
T ss_pred -CCCCceEE-EeCCCCEEEEecCCccEEEEeccCC
Confidence 45567777 4558889999999999999999874
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-29 Score=288.84 Aligned_cols=302 Identities=18% Similarity=0.317 Sum_probs=243.1
Q ss_pred eeeEecccccCE-EEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 443 LCQEIQAHEGSI-WTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 443 l~~~L~gH~~~I-~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
....|.+|.+.| .++.| ++++|++|+.||+|++||+.+++.+.
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---------------------------------- 156 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---------------------------------- 156 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE----------------------------------
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE----------------------------------
Confidence 456789999885 66666 57899999999999999998876554
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCI 600 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv 600 (969)
.+.+|.+.|++++|+++.+|++|+.||+|++||+.+++++..+ +|...|.++
T Consensus 157 ---------------------------~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l 209 (464)
T 3v7d_B 157 ---------------------------QLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209 (464)
T ss_dssp ---------------------------EECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred ---------------------------EEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEE
Confidence 5668999999999999779999999999999999999998888 699999999
Q ss_pred EEec-CCCCEEEEEECCCeEEEEeCCCce------------------------EEEEecCCCCEEEEEEccCCCEEEEEe
Q 002086 601 QFNP-MDDDYFISGSLDAKVRIWSISDRL------------------------VVDWTDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 601 ~fsp-~~~~~L~sgs~Dg~I~IWDl~~~~------------------------~~~~~~~~~~V~sv~fspdg~~Lasgs 655 (969)
+|++ .++.+|++|+.||.|++||+.++. ......|...+.++ ++++.++++|+
T Consensus 210 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~ 287 (464)
T 3v7d_B 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS 287 (464)
T ss_dssp EEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE
T ss_pred EEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe
Confidence 9995 266899999999999999998764 23455566777766 67889999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEE
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISA 735 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl 735 (969)
.||.|++||+.+++..... ..|...|.+++|+|++ ..+++++.|+.|++||..+.........|...|.++
T Consensus 288 ~d~~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 358 (464)
T 3v7d_B 288 YDNTLIVWDVAQMKCLYIL--------SGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 358 (464)
T ss_dssp TTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCeEEEEECCCCcEEEEe--------cCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 9999999999988765432 5688999999999988 799999999999999988776666666778889999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCC
Q 002086 736 AFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISS 815 (969)
Q Consensus 736 ~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~ 815 (969)
.|+ +.+|++++.||.|++||+.+++ ...... +. .
T Consensus 359 ~~~--~~~l~s~s~dg~v~vwd~~~~~------~~~~~~--~~------------------------------------~ 392 (464)
T 3v7d_B 359 RLS--DKFLVSAAADGSIRGWDANDYS------RKFSYH--HT------------------------------------N 392 (464)
T ss_dssp EEC--SSEEEEEETTSEEEEEETTTCC------EEEEEE--CT------------------------------------T
T ss_pred EEc--CCEEEEEeCCCcEEEEECCCCc------eeeeec--CC------------------------------------C
Confidence 997 5899999999999999998732 111110 00 0
Q ss_pred CCcccccCCCCCCccccCCCCccccCCCCCCccccC-CCCCCCCccccccC
Q 002086 816 NPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERV-PSPPEEELSLISHD 865 (969)
Q Consensus 816 ~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~-l~~pee~l~~is~h 865 (969)
.....+++|++.++++++ ++.+..|...++.+... ...+...+.++.++
T Consensus 393 ~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 393 LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp CCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred CccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 112234566676777766 78899999888877764 55667777777765
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-29 Score=283.36 Aligned_cols=321 Identities=15% Similarity=0.139 Sum_probs=239.9
Q ss_pred cceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhc
Q 002086 339 PVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQN 418 (969)
Q Consensus 339 ~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~ 418 (969)
..++.+++..+...+++++.+..+..|.....+... .+... .+.....+.++...+...
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~l~~~--------------- 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK-----MLKRA-DYTAVDTAKLQMRRFILG--------------- 115 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT-----TSCSC-CEEEEEEECSSSCEEEEE---------------
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee-----EEecC-CceEEEEEecCCCEEEEE---------------
Confidence 335577777777788888888877777543322211 11111 222222334443322111
Q ss_pred cccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCccc
Q 002086 419 KNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHP 498 (969)
Q Consensus 419 ~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~ 498 (969)
..++.+ .+|++...+....+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++.+
T Consensus 116 ~~dg~i---------~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~------------ 174 (420)
T 3vl1_A 116 TTEGDI---------KVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP------------ 174 (420)
T ss_dssp ETTSCE---------EEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC------------
T ss_pred ECCCCE---------EEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc------------
Confidence 122222 24466677788888999999999999999999999999999999999865432
Q ss_pred ccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcE
Q 002086 499 SLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTV 577 (969)
Q Consensus 499 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV 577 (969)
..+.+|...|.+++|+| +.+|++++.|++|
T Consensus 175 -------------------------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v 205 (420)
T 3vl1_A 175 -------------------------------------------------RTLIGHRATVTDIAIIDRGRNVLSASLDGTI 205 (420)
T ss_dssp -------------------------------------------------EEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred -------------------------------------------------eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 25678999999999999 8899999999999
Q ss_pred EEEECCCCcEEEEe----ecCCCeEEEEE---------------------ecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 578 RLWDMETKSCLKLF----AHNDYVTCIQF---------------------NPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 578 ~IWDl~t~~~i~~~----~h~~~V~sv~f---------------------sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
++||+.+++++..+ .|...|.+++| +| ++.+|++|+.||.|++||+++++....
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 284 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQ 284 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEE
Confidence 99999999998887 35556666665 56 788999999999999999998875544
Q ss_pred e--cCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCce-eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 633 T--DLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKL-HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 633 ~--~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~-~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
. .+...|.+++|+|++. +|++|+.||.|++||+++++. .... ...+...|.++.+. ++ .+|++++.|
T Consensus 285 ~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~v~~~~~~-~~-~~l~s~~~d 355 (420)
T 3vl1_A 285 LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF-------LINEGTPINNVYFA-AG-ALFVSSGFD 355 (420)
T ss_dssp ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-------EESTTSCEEEEEEE-TT-EEEEEETTT
T ss_pred cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh-------hccCCCCceEEEeC-CC-CEEEEecCC
Confidence 3 3567899999999999 999999999999999998753 2111 13367788888665 45 699999999
Q ss_pred CcEEEEeCCcc---------eEEEEeecCCCCeEEEEEeCCCC---EEEEEeCCCcEEEEEcCC
Q 002086 709 SRIRILDGLDI---------VHKFRGFRNTSSQISAAFNADGK---YIISASEDSQVYVWKREE 760 (969)
Q Consensus 709 g~I~IwD~~~~---------~~~~~~~~~~~~V~sl~fspdg~---~LaSgs~Dg~I~IWdl~t 760 (969)
+.|++|++... ........+...|.+++|+|++. .|++.+.+|.+.+|++++
T Consensus 356 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 356 TSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 99999995431 11122345667899999999999 788888899999999975
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=280.35 Aligned_cols=294 Identities=13% Similarity=0.151 Sum_probs=223.2
Q ss_pred eEecccccCEEEEEEeCCCCE-EEEEeC---CCcEEEEecccceEEEeec-CCccCcccccccCCC--CCccCCCCCCCC
Q 002086 445 QEIQAHEGSIWTIKFSLDARF-LASAGE---DRVIHVWEVQECEVMSMSE-GNLTPIHPSLCNSSD--KASSLDGSSPNP 517 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~-LaTgs~---DgtVrIWDl~tg~~l~~~~-~~~~~v~~~~~~~~~--~~~~~~g~~~~~ 517 (969)
..+++|.+.|++++|+|++.. +++|+. |+.|+|||+.+++...... ++...+..+.+.+.. ....+.+..
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~--- 88 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF--- 88 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET---
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC---
Confidence 456789999999999999964 456665 9999999999887654322 344445544444431 111111110
Q ss_pred CcccccCCCCCCCCcccccceeeecCC-C-ceeEeccCCCCEEEEEe------cC-CcEEEEEeCCCcEEEEECCCCc-E
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSE-K-PFCSFIGHLDDVLDLSW------SR-SHLLLSSSMDKTVRLWDMETKS-C 587 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-k-~~~~l~gH~~~I~~l~f------s~-~~~L~Sgs~DgtV~IWDl~t~~-~ 587 (969)
.....+|.... + ++..+.+|...|.++.| ++ +.+|++++.||.|++||+.+++ .
T Consensus 89 ----------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 89 ----------------GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp ----------------TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC
T ss_pred ----------------CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc
Confidence 11123344332 2 57788999999999965 55 7899999999999999999887 5
Q ss_pred EEEe-ecC----CCeEEEE----EecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEcc---CCCEEEEEe
Q 002086 588 LKLF-AHN----DYVTCIQ----FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTP---DGQNALIGS 655 (969)
Q Consensus 588 i~~~-~h~----~~V~sv~----fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fsp---dg~~Lasgs 655 (969)
+..+ .|. ..|.+++ |+| ++.+|++++.||.|++||+++++......+...|.+++|+| ++.+|++++
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 231 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS 231 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC
Confidence 5555 333 3899999 667 89999999999999999999999888888999999999999 999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc----------------
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---------------- 719 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---------------- 719 (969)
.||.|++||+++++........ ....|...|++++|+|++..+|++++.|+.|++||....
T Consensus 232 ~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~ 308 (357)
T 3i2n_A 232 LEGKFHVFDMRTQHPTKGFASV---SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA 308 (357)
T ss_dssp STTEEEEEEEEEEETTTEEEEE---EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCC
T ss_pred CCCeEEEEeCcCCCcccceeee---ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccc
Confidence 9999999999876543222110 124788999999999998448999999999999995421
Q ss_pred ---eEEEEeecCCCCeEEEEEeCCCCEEE-EEeCCCcEEEEEcCCC
Q 002086 720 ---VHKFRGFRNTSSQISAAFNADGKYII-SASEDSQVYVWKREEH 761 (969)
Q Consensus 720 ---~~~~~~~~~~~~V~sl~fspdg~~La-Sgs~Dg~I~IWdl~t~ 761 (969)
........|...|.+++|+|++++|+ +++.||.|+|||+.+.
T Consensus 309 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 309 GSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 23334455778899999999999998 8999999999999874
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=279.93 Aligned_cols=252 Identities=15% Similarity=0.233 Sum_probs=208.5
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
+..|.++|++++|+|++++|++|+.|+.|+|||+.+++..
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~---------------------------------------- 43 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---------------------------------------- 43 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE----------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE----------------------------------------
Confidence 4569999999999999999999999999999999876521
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEE---eecCCCeEEEEE
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKL---FAHNDYVTCIQF 602 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~---~~h~~~V~sv~f 602 (969)
.+..+.+|...|.+++|+| +++|++++.||.|++||+.+++.... ..|...|.+++|
T Consensus 44 -------------------~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 104 (372)
T 1k8k_C 44 -------------------QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 104 (372)
T ss_dssp -------------------EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEE
T ss_pred -------------------eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEE
Confidence 1225678999999999999 89999999999999999999886544 379999999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCce----EEEE-ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee----
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRL----VVDW-TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL---- 673 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~-~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~---- 673 (969)
+| ++.+|++++.|+.|++||+..+. .... ..|...|.+++|+|++++|++++.||.|++||+........
T Consensus 105 ~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 183 (372)
T 1k8k_C 105 AP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 183 (372)
T ss_dssp CT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred CC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccc
Confidence 99 89999999999999999998865 2223 45678899999999999999999999999999752211000
Q ss_pred ------eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 674 ------NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 674 ------~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
...........|...|.+++|+|++ .+|++++.|+.|++||............+...|.+++|+|++.+|++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 184 PWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG 262 (372)
T ss_dssp TTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred ccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE
Confidence 0000111224788899999999988 799999999999999987655555555667789999999999988888
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
.|+.|++|++.+
T Consensus 263 -~d~~i~i~~~~~ 274 (372)
T 1k8k_C 263 -HDCFPVLFTYDS 274 (372)
T ss_dssp -TTSSCEEEEEET
T ss_pred -eCCeEEEEEccC
Confidence 899999999987
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=308.11 Aligned_cols=428 Identities=13% Similarity=0.112 Sum_probs=305.9
Q ss_pred hhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchH
Q 002086 331 FEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQR 410 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~ 410 (969)
...+.||+..|.++++..+...+++++.++.+..|.... ......+....+...++.|+++...+...
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~------- 73 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYET-----QVEVRSIQVTETPVRAGKFIARKNWIIVG------- 73 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----TEEEEEEECCSSCEEEEEEEGGGTEEEEE-------
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCC-----CceEEEEecCCCcEEEEEEeCCCCEEEEE-------
Confidence 456789999999999888888888888888777775332 22222333334445555555555432221
Q ss_pred HHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 411 EQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 411 ~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
..++.+. +|++.+.+.+.++.+|.+.|++++|+|++++|++|+.||+|++||+.++...
T Consensus 74 --------~~dg~i~---------vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~---- 132 (814)
T 3mkq_A 74 --------SDDFRIR---------VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL---- 132 (814)
T ss_dssp --------ETTSEEE---------EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE----
T ss_pred --------eCCCeEE---------EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE----
Confidence 1223333 3356667788889999999999999999999999999999999999865221
Q ss_pred CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEE
Q 002086 491 GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLL 568 (969)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L 568 (969)
...+.+|...|.+++|+| +..|
T Consensus 133 --------------------------------------------------------~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 133 --------------------------------------------------------EQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp --------------------------------------------------------EEEEECCSSCEEEEEEETTEEEEE
T ss_pred --------------------------------------------------------EEEEcCCCCcEEEEEEEcCCCCEE
Confidence 125668999999999998 5799
Q ss_pred EEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecC-CCCEEEEEECCCeEEEEeCCCceEEEE-ecCCCCEEEEEE
Q 002086 569 LSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPM-DDDYFISGSLDAKVRIWSISDRLVVDW-TDLHEMVTAACY 644 (969)
Q Consensus 569 ~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~-~~~~L~sgs~Dg~I~IWDl~~~~~~~~-~~~~~~V~sv~f 644 (969)
++++.||+|++||+.++.....+ .+...|.+++|+|. ++.+|++++.||.|++||+.++..+.. ..|...|.+++|
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 236 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 99999999999999888766655 45589999999973 577999999999999999998876654 457789999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE---
Q 002086 645 TPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH--- 721 (969)
Q Consensus 645 spdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~--- 721 (969)
+|++.+|++++.||.|++||+.+++..... ..+...+.+++|+|++...+++++.++.+.+|+......
T Consensus 237 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (814)
T 3mkq_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTL--------NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLS 308 (814)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCSEEEEE--------CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeE
Confidence 999999999999999999999988765432 456789999999999866556677788888888442111
Q ss_pred -------EEE---------------------------------eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 722 -------KFR---------------------------------GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 722 -------~~~---------------------------------~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
... ...+...+.+++|+|+|++|++++ |+.+.+|++...
T Consensus 309 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~ 387 (814)
T 3mkq_A 309 LDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW 387 (814)
T ss_dssp ECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred ECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccc
Confidence 110 011233567999999999999998 899999998652
Q ss_pred CccCCCceeEEecccCCceeeeeeEEeecCCCcccC-CCCCccEEEcccccccCCCCcccccCCCC---CCccccCCCCc
Q 002086 762 RNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKG-EPPPTPVQTKKHAKRISSNPTSATSSPTK---EGSPAGHSRRL 837 (969)
Q Consensus 762 ~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G-~~~~~~v~~~~~~~~~~~~~~~~~~SP~~---~~i~~~~~~~~ 837 (969)
..... ....+..++ ..-..++.+ .+..+.+|... ...........++|++ .+++++..++.
T Consensus 388 ~~~~~-----------~~i~~~~~s--pdg~~la~~~~~g~v~l~~~~--~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~ 452 (814)
T 3mkq_A 388 RNKAF-----------GKCQDFVWG--PDSNSYALIDETGQIKYYKNF--KEVTSWSVPMHSAIDRLFSGALLGVKSDGF 452 (814)
T ss_dssp EEEEE-----------EECSEEEEC--TTSSCEEEECTTCCEEEEETT--EECTTCCCCCSSCCCEEECSSSEEEEETTE
T ss_pred cccCC-----------CceEEEEEe--CCCCeEEEEeCCCcEEEEECC--CCccceEEcCCcCccceecceEEEEecCCE
Confidence 21110 111111111 111112223 34445555322 1222234566789998 57888888999
Q ss_pred cccCCCCCCccccCCCCCCCCccccccCCCCCCcccc
Q 002086 838 LPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTS 874 (969)
Q Consensus 838 L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~ 874 (969)
+..|...++.....+..+.. .+.|+|.-..+.+.
T Consensus 453 v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~ 486 (814)
T 3mkq_A 453 VYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIV 486 (814)
T ss_dssp EEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEE
T ss_pred EEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEE
Confidence 99999888877776666554 67788875544433
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=281.41 Aligned_cols=302 Identities=14% Similarity=0.200 Sum_probs=231.1
Q ss_pred EecccccCEEEEEEeCC----CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 446 EIQAHEGSIWTIKFSLD----ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpD----g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
.+.+|.+.|++|+|+|+ ..++++++.++.|+|||+.+++.+..+...
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~----------------------------- 63 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY----------------------------- 63 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE-----------------------------
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec-----------------------------
Confidence 34589999999999984 446666666779999999877655432210
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC-----cEEEEEeCCCcEEEEECCCCcEEEEe-ecCC
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS-----HLLLSSSMDKTVRLWDMETKSCLKLF-AHND 595 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~-----~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~ 595 (969)
....|...|++++|+++ .+|++|+.||.|++||+.+++++..+ +|..
T Consensus 64 ---------------------------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 116 (366)
T 3k26_A 64 ---------------------------VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN 116 (366)
T ss_dssp ---------------------------ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS
T ss_pred ---------------------------cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC
Confidence 11237789999999973 58999999999999999999998887 5999
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe----cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT----DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~----~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
.|.+++|+|.++.+|++++.||.|++||+++++.+... .+...|.+++|+|++.+|++++.||.|++||+++++..
T Consensus 117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence 99999999967899999999999999999998877765 67889999999999999999999999999999876543
Q ss_pred eeeee--------------------eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-----------
Q 002086 672 QLNQV--------------------DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV----------- 720 (969)
Q Consensus 672 ~~~~~--------------------~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~----------- 720 (969)
..... ........|...|.+++|+ + .++++++.|+.|++||.....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 273 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSES 273 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCC
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCc
Confidence 21110 0011123488999999999 3 699999999999999965431
Q ss_pred ---EEEEeecCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcc
Q 002086 721 ---HKFRGFRNTSSQISAAFNAD--GKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMV 795 (969)
Q Consensus 721 ---~~~~~~~~~~~V~sl~fspd--g~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i 795 (969)
.......+...|.+++|+|+ +++|++|+.||.|++||+.+++.... ...... .+.
T Consensus 274 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~-~~~----------------- 333 (366)
T 3k26_A 274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA--KCTTLT-HHK----------------- 333 (366)
T ss_dssp CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC--EEEEEC-CTT-----------------
T ss_pred chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc--cceEEc-ccc-----------------
Confidence 23334456677889999999 99999999999999999998543211 111111 110
Q ss_pred cCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCC
Q 002086 796 KGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPK 843 (969)
Q Consensus 796 ~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~ 843 (969)
........+++|++.++++++.++.+..|..
T Consensus 334 -----------------~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 334 -----------------CGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp -----------------CCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred -----------------cCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 0111223456888888899999999888864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-29 Score=277.27 Aligned_cols=301 Identities=17% Similarity=0.201 Sum_probs=210.2
Q ss_pred hhhccCCCcceeeeecccccccccCCCCccccccccccccccccccccccc-ce-eeeeEEEeeecCCccccCCCCcccc
Q 002086 331 FEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALL-KN-IKGVAHSMSVKGDKECINPNPLLGD 408 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l-~~-v~gv~~s~~~~gd~~~~~~~~l~~~ 408 (969)
+..+.||...|.++++..+ .+++++.|..+..|....-.+... ..+ .. +.+.+.++.|+++...+..
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~---~~~~~~~h~~~v~~v~~sp~~~~las------ 75 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLI---DVLDETAHKKAIRSVAWRPHTSLLAA------ 75 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEE---EEECTTCCCSCEEEEEECTTSSEEEE------
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEE---EEEecCCccCCEEEEEECCCCCEEEE------
Confidence 4567899999999997655 788888999888776432111100 111 11 3344555666666543222
Q ss_pred hHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEe
Q 002086 409 QREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSM 488 (969)
Q Consensus 409 ~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~ 488 (969)
...++.+.++.. ..........+++..|.+|.+.|++++|+|+|++||+|+.|++|+|||+.....
T Consensus 76 ---------~s~D~~v~iw~~--~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~--- 141 (330)
T 2hes_X 76 ---------GSFDSTVSIWAK--EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE--- 141 (330)
T ss_dssp ---------EETTSCEEEEEC---------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC---
T ss_pred ---------EeCCCcEEEEEc--ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC---
Confidence 112333333322 111111123456788999999999999999999999999999999999853110
Q ss_pred ecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcE
Q 002086 489 SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHL 567 (969)
Q Consensus 489 ~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~ 567 (969)
..+.+..+.+|...|.+++|+| +.+
T Consensus 142 ------------------------------------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~ 167 (330)
T 2hes_X 142 ------------------------------------------------------EYECISVLQEHSQDVKHVIWHPSEAL 167 (330)
T ss_dssp ------------------------------------------------------CCEEEEEECCCSSCEEEEEECSSSSE
T ss_pred ------------------------------------------------------CeEEEEEeccCCCceEEEEECCCCCE
Confidence 0112336778999999999999 889
Q ss_pred EEEEeCCCcEEEEECCCC--cEEEEe-ecCCCeEEEEEecCC--CCEEEEEECCCeEEEEeCCCc--------eEEEEe-
Q 002086 568 LLSSSMDKTVRLWDMETK--SCLKLF-AHNDYVTCIQFNPMD--DDYFISGSLDAKVRIWSISDR--------LVVDWT- 633 (969)
Q Consensus 568 L~Sgs~DgtV~IWDl~t~--~~i~~~-~h~~~V~sv~fsp~~--~~~L~sgs~Dg~I~IWDl~~~--------~~~~~~- 633 (969)
|++|+.|++|++||+.++ +++..+ +|...|.+++|+| + +.+|++|+.|++|++||+..+ ......
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 999999999999999876 566666 7999999999999 6 568999999999999999754 223322
Q ss_pred c-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCC-CeEEEEEcCC-CCceEEEEeCCCc
Q 002086 634 D-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR-KITGFQFSPS-NPSEVLVTSADSR 710 (969)
Q Consensus 634 ~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~-~It~l~fspd-~~~~l~sgs~Dg~ 710 (969)
. |...|.+++|++++ +|++++.||.|+|||..++...... .....|.. .|.+++|+|. ++.+|++++.|++
T Consensus 247 ~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~-----~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFA-----KRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEE-----EESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEe-----ccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 2 77889999999765 8999999999999999876422111 11145665 8999999994 3378999999999
Q ss_pred EEEEeCC
Q 002086 711 IRILDGL 717 (969)
Q Consensus 711 I~IwD~~ 717 (969)
|+|||..
T Consensus 321 v~~W~~~ 327 (330)
T 2hes_X 321 VNFWSLE 327 (330)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 9999964
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=281.72 Aligned_cols=257 Identities=17% Similarity=0.282 Sum_probs=212.5
Q ss_pred ccccccceeeeEecc-cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 435 YKDLSALHLCQEIQA-HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 435 l~dl~~~~l~~~L~g-H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
+|++...+....+.. |.+.|++++|+|++++|++|+.||.|+|||+.+++.+.
T Consensus 117 lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------------------- 170 (401)
T 4aez_A 117 VWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR-------------------------- 170 (401)
T ss_dssp EEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------------------------
T ss_pred EeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE--------------------------
Confidence 345555666666665 89999999999999999999999999999998765543
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECC-CCcEEEEe-
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDME-TKSCLKLF- 591 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~-t~~~i~~~- 591 (969)
.+.+|...|.+++|+ +++|++|+.||.|++||+. .+..+..+
T Consensus 171 -----------------------------------~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 171 -----------------------------------TMAGHQARVGCLSWN-RHVLSSGSRSGAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp -----------------------------------EECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred -----------------------------------EecCCCCceEEEEEC-CCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence 556799999999996 4899999999999999998 45555555
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCC-EEEEEe--CCCcEEEEEcCC
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQ-NALIGS--HKGSCRLYSIED 667 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~-~Lasgs--~dg~I~IwDl~~ 667 (969)
+|...|.+++|+| ++.+|++|+.||.|++||++++..+. +..+...|.+++|+|++. ++++++ .|+.|++||+.+
T Consensus 215 ~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 215 GHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred CCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 7999999999999 99999999999999999999887654 456788999999999775 555554 799999999998
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE--eCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeCCCCE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT--SADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKY 743 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg--s~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fspdg~~ 743 (969)
++..... .+...|.+++|+|++ ..++++ +.|+.|++||... .........|...|.+++|+|+|++
T Consensus 294 ~~~~~~~---------~~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 363 (401)
T 4aez_A 294 GARVNTV---------DAGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRI 363 (401)
T ss_dssp CCEEEEE---------ECSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSE
T ss_pred CCEEEEE---------eCCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCE
Confidence 8765432 245689999999998 677774 4899999999765 4444455667888999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCcc
Q 002086 744 IISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
|++++.||.|++|++.+++.+
T Consensus 364 l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 364 LSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEECTTSEEEEEECCC----
T ss_pred EEEEeCCCcEEEEECCCCccc
Confidence 999999999999999986543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=277.70 Aligned_cols=281 Identities=17% Similarity=0.244 Sum_probs=219.6
Q ss_pred ccccccceeeeEecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
++++...+....+.+|.+.|++|+|+| ++++||+|+.||.|+|||+.+++.........
T Consensus 27 v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------------- 86 (408)
T 4a11_B 27 VLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA-------------------- 86 (408)
T ss_dssp HHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE--------------------
T ss_pred eeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc--------------------
Confidence 445666667778899999999999999 99999999999999999998754432110000
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
... .......+|...|.+++|+| +.+|++++.||.|++||+.+++.+..+
T Consensus 87 -------------------------~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (408)
T 4a11_B 87 -------------------------VCS---IGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF 138 (408)
T ss_dssp -------------------------EEE---ECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred -------------------------ccc---ccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec
Confidence 000 00001246999999999998 469999999999999999999999999
Q ss_pred ecCCCeEEEEEecC--CCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCC
Q 002086 592 AHNDYVTCIQFNPM--DDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIED 667 (969)
Q Consensus 592 ~h~~~V~sv~fsp~--~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~ 667 (969)
.+...+.++.|.+. ++.+|++++.||.|++||+.++..+. +..|...|.+++|+|++. +|++|+.||.|++||++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 139 NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 99999999999983 23499999999999999999876554 455788999999999998 588999999999999987
Q ss_pred Cceeeee--------eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-------------------
Q 002086 668 SKLHQLN--------QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV------------------- 720 (969)
Q Consensus 668 ~~~~~~~--------~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~------------------- 720 (969)
....... ..........|...|.+++|+|++ .+|++++.|+.|++||.....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 297 (408)
T 4a11_B 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF 297 (408)
T ss_dssp SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCC
T ss_pred CCcccccccccccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceecccccccccccccee
Confidence 6521110 000112225688999999999987 799999999999999954311
Q ss_pred ----------------------------EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCcc
Q 002086 721 ----------------------------HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 721 ----------------------------~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
.......|...|.+++|+|++++|++++.||.|++|++.+.+.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 298 TVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp EECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred EEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 12222346788999999999999999999999999999986543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=301.08 Aligned_cols=203 Identities=10% Similarity=0.133 Sum_probs=165.5
Q ss_pred EeccCCCCEEEEEecCC-------cEEEEEeCCCcEEEEECCCCcEE------------EEeecCCCeEEEEEecCCCCE
Q 002086 549 SFIGHLDDVLDLSWSRS-------HLLLSSSMDKTVRLWDMETKSCL------------KLFAHNDYVTCIQFNPMDDDY 609 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~~-------~~L~Sgs~DgtV~IWDl~t~~~i------------~~~~h~~~V~sv~fsp~~~~~ 609 (969)
.+.+|.+.|.+++|+|. .+|++++.||+|+|||+.++.+. ...+|...|++++|++ + ..
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~ 279 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TT 279 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-Ce
Confidence 45678899999999983 69999999999999999876421 2237999999999997 4 58
Q ss_pred EEEEECCCeEEEEeCCCce--EEEEecCCCCEEEE--EEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 610 FISGSLDAKVRIWSISDRL--VVDWTDLHEMVTAA--CYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 610 L~sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv--~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
|++|+.||+|++||++++. ...+..|...|+++ +|+|++ .+|++|+.|++|+|||+++++....... ..
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~------~~ 353 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS------RF 353 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE------EC
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc------cc
Confidence 9999999999999998753 23467788999999 578887 8999999999999999988765332210 11
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
....|.+++|+|++ ..+++++.|++|++||............|...|++++|+|+|++|++|+.||+|+|||+..
T Consensus 354 ~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 354 RGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp SCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred ccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 11357899999987 6799999999999999876543333445788899999999999999999999999999864
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=284.35 Aligned_cols=255 Identities=18% Similarity=0.339 Sum_probs=197.7
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.|.+.|++|+|+|+|++||+|+.||.|+|||+.+++.......
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~------------------------------------- 68 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR------------------------------------- 68 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCC-------------------------------------
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccc-------------------------------------
Confidence 3789999999999999999999999999999987543210000
Q ss_pred CCCcccccceeeecCCCceeEeccCC------------CCEEEEEecC-C--cEEEEEeCCCcEEEEECCCCcEE-----
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHL------------DDVLDLSWSR-S--HLLLSSSMDKTVRLWDMETKSCL----- 588 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~------------~~I~~l~fs~-~--~~L~Sgs~DgtV~IWDl~t~~~i----- 588 (969)
...+....+.+|. +.|.+++|+| + .+|++++.|++|++||+.++...
T Consensus 69 -------------~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~ 135 (447)
T 3dw8_B 69 -------------GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYN 135 (447)
T ss_dssp -------------CCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCS
T ss_pred -------------cceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceec
Confidence 0112234677887 8899999999 4 69999999999999999875442
Q ss_pred ----------------------------------EE--eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEEE
Q 002086 589 ----------------------------------KL--FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVVD 631 (969)
Q Consensus 589 ----------------------------------~~--~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~ 631 (969)
.. .+|...|.+++|+| ++.+|++| .|+.|++||+.. +..+.
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~ 213 (447)
T 3dw8_B 136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFN 213 (447)
T ss_dssp CC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEE
T ss_pred ccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceee
Confidence 12 26999999999999 89999998 899999999994 44444
Q ss_pred --------EecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC------------CCeE
Q 002086 632 --------WTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST------------RKIT 690 (969)
Q Consensus 632 --------~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~------------~~It 690 (969)
+..|...|.+++|+|++ .+|++|+.||.|++||+++++...... .....|. ..|.
T Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~ 289 (447)
T 3dw8_B 214 IVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS----KLFEEPEDPSNRSFFSEIISSIS 289 (447)
T ss_dssp EEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC----EEECCC-----CCHHHHHTTCEE
T ss_pred eeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee----eEeccCCCccccccccccCceEE
Confidence 34678889999999998 999999999999999999877411000 0113333 3899
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeecCCCC-------------eEEEEEeCCCCEEEEEeCCCcEE
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFRNTSS-------------QISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~~~~~-------------V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
+++|+|++ .+|++++. +.|++||... ....+..+..... +..++|+|++++|++|+.||.|+
T Consensus 290 ~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~ 367 (447)
T 3dw8_B 290 DVKFSHSG-RYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFR 367 (447)
T ss_dssp EEEECTTS-SEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEE
T ss_pred EEEECCCC-CEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEE
Confidence 99999988 78888888 9999999764 3444544432111 33489999999999999999999
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
|||+.++
T Consensus 368 iwd~~~~ 374 (447)
T 3dw8_B 368 MFDRNTK 374 (447)
T ss_dssp EEETTTC
T ss_pred EEEcCCC
Confidence 9999984
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-28 Score=273.53 Aligned_cols=255 Identities=15% Similarity=0.166 Sum_probs=210.4
Q ss_pred ccccce--eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 437 DLSALH--LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 437 dl~~~~--l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
++...+ .+..+.+|.+.|++++|+|++++|++++.|+.|++||+.+++....
T Consensus 36 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------------------------- 89 (372)
T 1k8k_C 36 EKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT-------------------------- 89 (372)
T ss_dssp EEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE--------------------------
T ss_pred eCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeee--------------------------
Confidence 444444 7888999999999999999999999999999999999987664331
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE---EEE
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC---LKL 590 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~---i~~ 590 (969)
..+.+|...|.+++|++ +.+|++++.|+.|++||+..+.. ...
T Consensus 90 ---------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 136 (372)
T 1k8k_C 90 ---------------------------------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH 136 (372)
T ss_dssp ---------------------------------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred ---------------------------------EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee
Confidence 13456889999999999 88999999999999999998772 233
Q ss_pred e--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC------------------CceEEE-EecCCCCEEEEEEccCCC
Q 002086 591 F--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS------------------DRLVVD-WTDLHEMVTAACYTPDGQ 649 (969)
Q Consensus 591 ~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~------------------~~~~~~-~~~~~~~V~sv~fspdg~ 649 (969)
+ .|...|.+++|+| ++.+|++++.||.|++||+. .+..+. +..|...|.+++|+|+++
T Consensus 137 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 137 IKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 215 (372)
T ss_dssp ECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred eecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence 2 6899999999999 89999999999999999964 455554 446778999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEE-----
Q 002086 650 NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHK----- 722 (969)
Q Consensus 650 ~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~----- 722 (969)
+|++++.||.|++||+.+++..... ..|...|.+++|+|++ .+++++ .|+.|++|+... ....
T Consensus 216 ~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKKMAVATL--------ASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EEEEEETTTEEEEEEGGGTTEEEEE--------ECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred EEEEEeCCCEEEEEECCCCceeEEE--------ccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence 9999999999999999988765432 4577899999999987 556555 999999999655 2100
Q ss_pred ---------------------------------EEe-ecCCCCeEEEEEe-CCC---CEEEEEeCCCcEEEEEcCCC
Q 002086 723 ---------------------------------FRG-FRNTSSQISAAFN-ADG---KYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 723 ---------------------------------~~~-~~~~~~V~sl~fs-pdg---~~LaSgs~Dg~I~IWdl~t~ 761 (969)
... ..|...|++++|. ++| .+|++|+.||.|+||++.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred CccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 111 2577889999966 677 99999999999999999874
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-28 Score=271.22 Aligned_cols=256 Identities=18% Similarity=0.303 Sum_probs=207.9
Q ss_pred ccccceeeeEecccccCEEEEEEeCC---CCEEEEEeCCCcEEEEeccc-ceEEEeecCCccCcccccccCCCCCccCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLD---ARFLASAGEDRVIHVWEVQE-CEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpD---g~~LaTgs~DgtVrIWDl~t-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
.....+.++.+++|.+.|++|+|+|+ |++|++|+.||.|+|||+.+ +..+.
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~------------------------- 79 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP------------------------- 79 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------------------------
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------------------------
Confidence 34556677789999999999999999 69999999999999999986 32221
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
..+.+|...|.+++|+| +++|++++.||.|++||+.+++++...
T Consensus 80 -----------------------------------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 124 (368)
T 3mmy_A 80 -----------------------------------KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA 124 (368)
T ss_dssp -----------------------------------EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred -----------------------------------EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec
Confidence 25678999999999999 789999999999999999999999989
Q ss_pred ecCCCeEEEEE--ecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 592 AHNDYVTCIQF--NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 592 ~h~~~V~sv~f--sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
.|...|.+++| ++ ++.+|++++.||.|++||+++++.+........+.++.+.+ ..+++++.++.+++|++....
T Consensus 125 ~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~ 201 (368)
T 3mmy_A 125 QHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PMAVVATAERGLIVYQLENQP 201 (368)
T ss_dssp ECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TEEEEEEGGGCEEEEECSSSC
T ss_pred cccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--CeeEEEeCCCcEEEEEecccc
Confidence 99999999999 77 78899999999999999999988777777777777777764 588999999999999998765
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCC---CceEEEEeCCCcEEEEeCCcc-----eEEEEeecCC----------CC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSN---PSEVLVTSADSRIRILDGLDI-----VHKFRGFRNT----------SS 731 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~---~~~l~sgs~Dg~I~IwD~~~~-----~~~~~~~~~~----------~~ 731 (969)
..... ....+...+.++.+.++. +..+++++.|+.|++|+.... ...+..+... ..
T Consensus 202 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (368)
T 3mmy_A 202 SEFRR------IESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYA 275 (368)
T ss_dssp EEEEE------CCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECC
T ss_pred chhhh------ccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccc
Confidence 43221 112344455666655543 123999999999999997643 2334333221 16
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 732 QISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 732 V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|.+++|+|++++|++|+.||.|+|||+.++
T Consensus 276 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 276 VNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 999999999999999999999999999873
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=280.53 Aligned_cols=203 Identities=13% Similarity=0.075 Sum_probs=167.4
Q ss_pred cCCCCEEEEEecC-CcEEEEE--eCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce
Q 002086 552 GHLDDVLDLSWSR-SHLLLSS--SMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL 628 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~Sg--s~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~ 628 (969)
.+...+.+++|+| +++|+++ +.|++|+|||+.+++++..+.|...|.+|+|+| ++.+|++++.++ +++|+..++.
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~~~ 208 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGSS-LEVISTVTGS 208 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSSC-EEEEETTTCC
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEecccee-EEEEEeccCc
Confidence 4556799999999 7776644 479999999999999999999999999999999 999999998655 6666666554
Q ss_pred EE-E--EecCCCCEEEEEEccCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 629 VV-D--WTDLHEMVTAACYTPDGQNALIGSHKG----SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 629 ~~-~--~~~~~~~V~sv~fspdg~~Lasgs~dg----~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
.+ . ...+...|.+++|+|++.++++++.++ .+++|++......... ......|...|++++|+|++ .+
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~V~~~~~Spdg-~~ 283 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR----SKQVTNRFKGITSMDVDMKG-EL 283 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE----EEEEESSCSCEEEEEECTTS-CE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee----eeeecCCCCCeEeEEECCCC-Cc
Confidence 43 2 234667899999999999999999887 6888998776543221 12235788899999999998 89
Q ss_pred EEEEeCCCcEEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 702 VLVTSADSRIRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|++|+.|++|+|||..+....... ..|...|++++|+|||++||+|+.|++|+||++...
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999998876665543 457889999999999999999999999999999754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=286.38 Aligned_cols=252 Identities=15% Similarity=0.155 Sum_probs=190.5
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+..+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++.
T Consensus 46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~------------------------------------ 89 (377)
T 3dwl_C 46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT------------------------------------ 89 (377)
T ss_dssp EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C------------------------------------
T ss_pred EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc------------------------------------
Confidence 34556788999999999999999999999999999999986540
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE---EEEe-e-cCC
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC---LKLF-A-HND 595 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~---i~~~-~-h~~ 595 (969)
.++...+.+|...|.+++|+| +++|++|+.|+.|++||+.+++. ...+ . |..
T Consensus 90 ----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 90 ----------------------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp ----------------------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred ----------------------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 011235667999999999999 78999999999999999998873 4444 4 999
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCC------------------CceEEEEecCCCCEEEEEEccCCCEEEEEeCC
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSIS------------------DRLVVDWTDLHEMVTAACYTPDGQNALIGSHK 657 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~------------------~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d 657 (969)
.|.+++|+| ++.+|++++.|+.|++||+. .++++..+.|...|.+++|+|++++|++++.|
T Consensus 148 ~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 148 TILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD 226 (377)
T ss_dssp CEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT
T ss_pred CeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC
Confidence 999999999 89999999999999999985 24455545788899999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-----------------
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV----------------- 720 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~----------------- 720 (969)
|.|++||+.+++.... .......|...|.+++|+|++ .+|++++.++.+ +|+.....
T Consensus 227 ~~i~iwd~~~~~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3dwl_C 227 SSVTIAYPSAPEQPPR----ALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT 300 (377)
T ss_dssp TEEC-CEECSTTSCEE----ECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred CcEEEEECCCCCCcce----eeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence 9999999998875211 112236788899999999998 677777655555 66633100
Q ss_pred ---------------------EEEEe--------------ecCCCCeEEEEEeCC-CC---EEEEEeCCCcEEEEEc
Q 002086 721 ---------------------HKFRG--------------FRNTSSQISAAFNAD-GK---YIISASEDSQVYVWKR 758 (969)
Q Consensus 721 ---------------------~~~~~--------------~~~~~~V~sl~fspd-g~---~LaSgs~Dg~I~IWdl 758 (969)
..+.. ..|...|+++.+.++ +. .|+||+.||.|+|||+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00110 117778999997664 33 6999999999999986
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=273.33 Aligned_cols=249 Identities=15% Similarity=0.134 Sum_probs=208.6
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+....+|.+.|++++|+|++++|++++.|+.|+||++.+++...
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~------------------------------------ 47 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV------------------------------------ 47 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE------------------------------------
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc------------------------------------
Confidence 34456899999999999999999999999999999987653110
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEEC-CCCcEEEEee--cCCCeE
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDM-ETKSCLKLFA--HNDYVT 598 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl-~t~~~i~~~~--h~~~V~ 598 (969)
+...+.+|...|.+++|++ +. +|++|+.||.|++||+ .+++...... |...|.
T Consensus 48 ----------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~ 105 (342)
T 1yfq_A 48 ----------------------DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC 105 (342)
T ss_dssp ----------------------EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE
T ss_pred ----------------------cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceE
Confidence 1124457999999999998 78 9999999999999999 9888866667 999999
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCC---------ceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-C
Q 002086 599 CIQFNPMDDDYFISGSLDAKVRIWSISD---------RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED-S 668 (969)
Q Consensus 599 sv~fsp~~~~~L~sgs~Dg~I~IWDl~~---------~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~ 668 (969)
+++|+| +.+|++++.|+.|++||+++ ++.+....+...|.+++|+|++ +++++.++.|++||++. .
T Consensus 106 ~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~ 181 (342)
T 1yfq_A 106 RICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCE 181 (342)
T ss_dssp EEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCT
T ss_pred EEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccc
Confidence 999998 89999999999999999987 6666666688899999999987 99999999999999988 5
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcC-CCCceEEEEeCCCcEEEEeCC--------cceEEEEeecC-------CCCe
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSP-SNPSEVLVTSADSRIRILDGL--------DIVHKFRGFRN-------TSSQ 732 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fsp-d~~~~l~sgs~Dg~I~IwD~~--------~~~~~~~~~~~-------~~~V 732 (969)
...... ....+...|.+++|+| ++ .++++++.|+.|++|+.. .....+..+.. ...|
T Consensus 182 ~~~~~~------~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 254 (342)
T 1yfq_A 182 DDNGTI------EESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPV 254 (342)
T ss_dssp TCCCEE------EECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCE
T ss_pred ccccee------eecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeE
Confidence 432111 1145778899999999 87 799999999999999954 33444554432 3489
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+++|+|++++|++++.||.|++||+.++
T Consensus 255 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred EEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 99999999999999999999999999873
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-28 Score=280.09 Aligned_cols=255 Identities=19% Similarity=0.293 Sum_probs=211.8
Q ss_pred ccccccceeeeEe--cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCC
Q 002086 435 YKDLSALHLCQEI--QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 435 l~dl~~~~l~~~L--~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
+|++.++++.+.+ .+|.+.|++|+|+|||++||+|+.||+|+|||+.+++.+.
T Consensus 129 lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~------------------------- 183 (420)
T 4gga_A 129 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR------------------------- 183 (420)
T ss_dssp EEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-------------------------
T ss_pred EEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE-------------------------
Confidence 3456666655544 5788899999999999999999999999999999877654
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc-EEEEe
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS-CLKLF 591 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~-~i~~~ 591 (969)
.+.+|...|.++.|+ +.+|++|+.|+.+++||..... .+..+
T Consensus 184 ------------------------------------~~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~ 226 (420)
T 4gga_A 184 ------------------------------------NMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATL 226 (420)
T ss_dssp ------------------------------------EECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred ------------------------------------EEeCCCCceEEEeeC-CCEEEEEeCCCceeEeeecccceeeEEe
Confidence 566799999999987 4899999999999999998754 33444
Q ss_pred -ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-----EEEEecCCCCEEEEEEccCCC-EEEE--EeCCCcEEE
Q 002086 592 -AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-----VVDWTDLHEMVTAACYTPDGQ-NALI--GSHKGSCRL 662 (969)
Q Consensus 592 -~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-----~~~~~~~~~~V~sv~fspdg~-~Las--gs~dg~I~I 662 (969)
+|...+..+.|+| ++.++++++.|+.|++||...++ +.....+...|.+++|+|.+. .+++ |+.|++|++
T Consensus 227 ~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i 305 (420)
T 4gga_A 227 SGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 305 (420)
T ss_dssp ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred cccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence 8999999999999 99999999999999999998764 345667888999999999765 5554 457999999
Q ss_pred EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe--CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCC
Q 002086 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS--ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 663 wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs--~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspd 740 (969)
||+.+++..... .+...+.++.|+|++ ..+++++ .|+.|+|||..+.........|...|++++|+||
T Consensus 306 wd~~t~~~~~~~---------~~~~~v~~~~~~~~~-~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spd 375 (420)
T 4gga_A 306 WNVCSGACLSAV---------DAHSQVCSILWSPHY-KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 375 (420)
T ss_dssp EETTTTEEEEEE---------ECSSCEEEEEEETTT-TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred EeCCccccceee---------ccccceeeeeecCCC-CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 999998865442 235678999999988 4555543 7899999998776666666667889999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCC
Q 002086 741 GKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
|++|+||+.|++|+|||+.+..
T Consensus 376 g~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 376 GATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp SSCEEEEETTTEEEEECCSCSS
T ss_pred CCEEEEEecCCeEEEEECCCCC
Confidence 9999999999999999998643
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-28 Score=278.91 Aligned_cols=238 Identities=20% Similarity=0.392 Sum_probs=202.3
Q ss_pred eeeeEecccccCE-EEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 442 HLCQEIQAHEGSI-WTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 442 ~l~~~L~gH~~~I-~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
+....|.+|.+.| ++ ++++|++|++|+.||+|+|||+.+++.+.
T Consensus 109 ~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~--------------------------------- 153 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLR--------------------------------- 153 (445)
T ss_dssp CCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEE---------------------------------
T ss_pred ceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEE---------------------------------
Confidence 3456789999975 55 45568999999999999999998776544
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~s 599 (969)
.+.+|.+.|+++.|+ +++|++|+.||+|++||+.+++++..+ +|...|.+
T Consensus 154 ----------------------------~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 204 (445)
T 2ovr_B 154 ----------------------------TLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 204 (445)
T ss_dssp ----------------------------ECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred ----------------------------EEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEE
Confidence 456799999999998 589999999999999999999998887 79999999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
++|+ +++|++|+.||.|++||+.+++.+. +..|...|.+++| ++.++++|+.||.|++||+.+++.....
T Consensus 205 ~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~---- 275 (445)
T 2ovr_B 205 MHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL---- 275 (445)
T ss_dssp EEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE----
T ss_pred EEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe----
Confidence 9995 5789999999999999999887654 5567789999999 7889999999999999999988754332
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
..|...|.++.| ++ ..+++++.|+.|++||............+...+.++.+ ++.+|++|+.||.|++||+
T Consensus 276 ----~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 276 ----QGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp ----CCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred ----cCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEEC
Confidence 568889999999 34 78999999999999998776655555566777777766 5679999999999999999
Q ss_pred CCC
Q 002086 759 EEH 761 (969)
Q Consensus 759 ~t~ 761 (969)
.++
T Consensus 347 ~~~ 349 (445)
T 2ovr_B 347 KTG 349 (445)
T ss_dssp TTC
T ss_pred CCC
Confidence 873
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-29 Score=288.01 Aligned_cols=304 Identities=11% Similarity=0.081 Sum_probs=231.3
Q ss_pred hhc-cCCCcceeeeeccc-ccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccch
Q 002086 332 EKS-VGHSPVVKELMRRE-NVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQ 409 (969)
Q Consensus 332 ~~~-~GHs~~V~~l~~~~-~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~ 409 (969)
..+ .||...|.++++.. ++..+++++.|..+..|... ..... . .
T Consensus 56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~-----~~~~~-----------------~--~---------- 101 (437)
T 3gre_A 56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLK-----EIIVG-----------------E--V---------- 101 (437)
T ss_dssp EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHH-----HHHTT-----------------C--C----------
T ss_pred eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECc-----ccccC-----------------c--c----------
Confidence 445 78999999999877 88889998888877666521 11000 0 0
Q ss_pred HHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecc---cceEE
Q 002086 410 REQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQ---ECEVM 486 (969)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~---tg~~l 486 (969)
.+....+ +|.+.|++|+|+|++++|++|+.||+|+|||+. +++.+
T Consensus 102 -------------------------------~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~ 149 (437)
T 3gre_A 102 -------------------------------YSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV 149 (437)
T ss_dssp -------------------------------CSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE
T ss_pred -------------------------------cceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee
Confidence 0001112 499999999999999999999999999999995 44444
Q ss_pred EeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCcee--Eecc--CCCCEEEEEe
Q 002086 487 SMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFC--SFIG--HLDDVLDLSW 562 (969)
Q Consensus 487 ~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~--~l~g--H~~~I~~l~f 562 (969)
....++ .+. .+.. +...+.++.+
T Consensus 150 ~~~~~~-----------------------------------------------------~i~~~~~~~~~~~~~~~~~~~ 176 (437)
T 3gre_A 150 KFLNCE-----------------------------------------------------CIRKINLKNFGKNEYAVRMRA 176 (437)
T ss_dssp EEEEEE-----------------------------------------------------EEEEEEGGGGSSCCCEEEEEE
T ss_pred eccccc-----------------------------------------------------eeEEEEccCcccccCceEEEE
Confidence 322211 011 1122 6677888884
Q ss_pred --cC-CcEEEEEeCCCcEEEEECCCCcEEEEe-e--cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe--c
Q 002086 563 --SR-SHLLLSSSMDKTVRLWDMETKSCLKLF-A--HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT--D 634 (969)
Q Consensus 563 --s~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~--h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~ 634 (969)
++ +.+|++|+.|+.|++||+.+++++..+ . |...|++++|+| ++.+|++|+.||.|++||+++++.+... .
T Consensus 177 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 255 (437)
T 3gre_A 177 FVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFG 255 (437)
T ss_dssp EECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCT
T ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecC
Confidence 45 789999999999999999999998887 3 899999999999 8999999999999999999999887754 6
Q ss_pred CCCCEEEEEEcc----CCCEEEEEeCCCcEEEEEcCCCceeeeeeee--------ecc--------ccc--CCCCCeEEE
Q 002086 635 LHEMVTAACYTP----DGQNALIGSHKGSCRLYSIEDSKLHQLNQVD--------FQT--------KKK--SSTRKITGF 692 (969)
Q Consensus 635 ~~~~V~sv~fsp----dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~--------~~~--------~~~--~h~~~It~l 692 (969)
+...|.+++|+| ++.+|++|+.||.|++||+.+++........ +.. ... .|...|+++
T Consensus 256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 335 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335 (437)
T ss_dssp TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence 677899996664 6789999999999999999988765443211 000 011 277789999
Q ss_pred EEcCCCCceEEEEeCCCcEEEEeCCcc--eEEEEee-----------------------------------cCCCCeEEE
Q 002086 693 QFSPSNPSEVLVTSADSRIRILDGLDI--VHKFRGF-----------------------------------RNTSSQISA 735 (969)
Q Consensus 693 ~fspd~~~~l~sgs~Dg~I~IwD~~~~--~~~~~~~-----------------------------------~~~~~V~sl 735 (969)
+|+ ++ .+|++++.|+.|++||+.+. ...+..+ .|...|+++
T Consensus 336 ~~~-~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i 413 (437)
T 3gre_A 336 SVS-ND-KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSI 413 (437)
T ss_dssp EEE-TT-EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEE
T ss_pred EEC-Cc-eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeE
Confidence 999 55 79999999999999996643 2333321 167889999
Q ss_pred EEeCC--CCEEEEEeCCCcEEEEE
Q 002086 736 AFNAD--GKYIISASEDSQVYVWK 757 (969)
Q Consensus 736 ~fspd--g~~LaSgs~Dg~I~IWd 757 (969)
+|+++ +.+|++|+.||.|+||+
T Consensus 414 ~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 414 STCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEESSSSEEEEEEETTSCEEEEC
T ss_pred eeeccCCceEEEEEcCCceEEEeC
Confidence 99998 78999999999999995
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-27 Score=273.32 Aligned_cols=251 Identities=19% Similarity=0.363 Sum_probs=215.0
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+|++.+.+.+.++.+|.+.|++++|++++ +|++|+.||+|+|||+.+++.+.
T Consensus 146 vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~--------------------------- 197 (464)
T 3v7d_B 146 VYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH--------------------------- 197 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE---------------------------
T ss_pred EEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE---------------------------
Confidence 34677788899999999999999999988 99999999999999998876554
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCcE----
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSC---- 587 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~---- 587 (969)
.+.+|...|.+++|++ +.+|++|+.|++|++||+.++..
T Consensus 198 ----------------------------------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 198 ----------------------------------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp ----------------------------------EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred ----------------------------------EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence 5667999999999984 58999999999999999988753
Q ss_pred -------------------EEE-eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEcc
Q 002086 588 -------------------LKL-FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTP 646 (969)
Q Consensus 588 -------------------i~~-~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fsp 646 (969)
+.. .+|...|.++. + ++.+|++|+.||.|++||+.+++.+. +..|...|.+++|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 320 (464)
T 3v7d_B 244 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320 (464)
T ss_dssp ---CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred cccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC
Confidence 222 37888888885 4 68999999999999999999987665 445778999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee
Q 002086 647 DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF 726 (969)
Q Consensus 647 dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~ 726 (969)
++++|++|+.||.|++||+.+++..... ..|...|.++.|++ .++++++.|+.|++||..+....+..+
T Consensus 321 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 321 ERKRCISASMDTTIRIWDLENGELMYTL--------QGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEE--------eCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeec
Confidence 9999999999999999999988765432 57889999999984 699999999999999988766655544
Q ss_pred cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 727 RNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
+...+..++|++++.+|++|+ ||.|+|||+.+++.
T Consensus 390 -~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~ 424 (464)
T 3v7d_B 390 -HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL 424 (464)
T ss_dssp -CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE
T ss_pred -CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE
Confidence 455677889999999999999 99999999998543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=259.30 Aligned_cols=253 Identities=19% Similarity=0.289 Sum_probs=209.2
Q ss_pred ccccccceeeeEe--cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCC
Q 002086 435 YKDLSALHLCQEI--QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 435 l~dl~~~~l~~~L--~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
+|++.++++++.+ .+|...|++|+|+|++++||+|+.||+|+|||+.+++.+.
T Consensus 49 iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~------------------------- 103 (318)
T 4ggc_A 49 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR------------------------- 103 (318)
T ss_dssp EEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-------------------------
T ss_pred EEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-------------------------
Confidence 4466666666655 5788899999999999999999999999999999887655
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcE-EEE-
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSC-LKL- 590 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~-i~~- 590 (969)
.+.+|...+.++.+. +..|++++.++.+++|+...... +..
T Consensus 104 ------------------------------------~~~~h~~~~~~~~~~-~~~l~s~~~~~~~~~~~~~~~~~~~~~~ 146 (318)
T 4ggc_A 104 ------------------------------------NMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATL 146 (318)
T ss_dssp ------------------------------------EEECCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred ------------------------------------EecCccceEEEeecC-CCEEEEEecCCceEeeecCCCceeEEEE
Confidence 456788888877765 48999999999999999987653 333
Q ss_pred eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-----EEEEecCCCCEEEEEEccCCCEE---EEEeCCCcEEE
Q 002086 591 FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL-----VVDWTDLHEMVTAACYTPDGQNA---LIGSHKGSCRL 662 (969)
Q Consensus 591 ~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~-----~~~~~~~~~~V~sv~fspdg~~L---asgs~dg~I~I 662 (969)
.+|...+.++.+.+ ++.+|++++.|+.|++||+++++ ......+...|.+++++|++..+ ++++.++.|++
T Consensus 147 ~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l 225 (318)
T 4ggc_A 147 SGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI 225 (318)
T ss_dssp ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred cCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence 48999999999999 89999999999999999998764 34556677889999999977643 35667899999
Q ss_pred EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE--eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCC
Q 002086 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT--SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 663 wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg--s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspd 740 (969)
||......... ..+...+..+.|+|.+. .++++ +.|+.|+|||..+.........|...|++++|+||
T Consensus 226 wd~~~~~~~~~---------~~~~~~v~~~~~~~~~~-~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd 295 (318)
T 4ggc_A 226 WNVCSGACLSA---------VDAHSQVCSILWSPHYK-ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 295 (318)
T ss_dssp EETTTCCEEEE---------EECSSCEEEEEEETTTT-EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred Eeccccccccc---------ccceeeeeeeeeccccc-ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 99988765433 34567799999999884 44444 47999999998876666666667889999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 002086 741 GKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t 760 (969)
|++|+||+.||+|+|||+.+
T Consensus 296 g~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 296 GATVASAAADETLRLWRCFE 315 (318)
T ss_dssp SSCEEEEETTTEEEEECCSC
T ss_pred CCEEEEEecCCeEEEEECCC
Confidence 99999999999999999976
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=270.16 Aligned_cols=271 Identities=13% Similarity=0.161 Sum_probs=207.5
Q ss_pred CCceeEeccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCCCCEEEEEECCCe
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR-S-HLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDDDYFISGSLDAK 618 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~-~-~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~Dg~ 618 (969)
.+....+.+|...|++++|++ + .+|++|+.||.|+|||+.+++....+ +|...|.+++|+|.++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 344567899999999999999 5 79999999999999999998877766 599999999999955689999999999
Q ss_pred EEEEeCCCceEEEEecCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc
Q 002086 619 VRIWSISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS 695 (969)
Q Consensus 619 I~IWDl~~~~~~~~~~~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs 695 (969)
|++||+.+..+..+..+. ..|.+++|+|++++|++|+.|+.|++||++.. .... ...|...|.+++|+
T Consensus 143 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~--------~~~h~~~v~~~~~~ 213 (383)
T 3ei3_B 143 TTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH-EIFK--------EKLHKAKVTHAEFN 213 (383)
T ss_dssp EEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC-EEEE--------EECSSSCEEEEEEC
T ss_pred EEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC-EEEE--------eccCCCcEEEEEEC
Confidence 999999987766665544 77999999999999999999999999999533 2221 15688999999999
Q ss_pred CCCCceEEEEeCCCcEEEEeCCcc---eEEEEeecCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCCccCCCceeE
Q 002086 696 PSNPSEVLVTSADSRIRILDGLDI---VHKFRGFRNTSSQISAAFNA-DGKYIISASEDSQVYVWKREEHRNASTGKRAI 771 (969)
Q Consensus 696 pd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~~~~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~ 771 (969)
|++..++++++.|+.|++||.... ........+...|.+++|+| ++.+|++++.|+.|+|||+.+.+...+
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----- 288 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ----- 288 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE-----
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc-----
Confidence 998559999999999999997651 12222235788999999999 999999999999999999998544321
Q ss_pred EecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccC
Q 002086 772 ITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERV 851 (969)
Q Consensus 772 ~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~ 851 (969)
...+..... .........| ..........++|++.+ +++.++.+..|...++....+
T Consensus 289 -~~~~~~~~~--------------~~~~~~~~~~------~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~ 345 (383)
T 3ei3_B 289 -IIIHPHRQF--------------QHLTPIKATW------HPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ 345 (383)
T ss_dssp -EEECCBCCC--------------TTSCCCCCEE------CSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE
T ss_pred -ccccccccc--------------ccccceEEec------cCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee
Confidence 111100000 0000000111 11123344667899988 888999999998776654443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=305.19 Aligned_cols=254 Identities=17% Similarity=0.280 Sum_probs=209.1
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
...+.+|.+.|++++|+|+|++|++|+.||+|+|||+..+...
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~------------------------------------- 44 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------------------------------------- 44 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE-------------------------------------
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc-------------------------------------
Confidence 3568899999999999999999999999999999998733211
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCc--EEEEe-ecCCCe
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKS--CLKLF-AHNDYV 597 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~--~i~~~-~h~~~V 597 (969)
....+.+|.+.|++++|++ +++|++|+.||+|++||+.+++ .+..+ .|...|
T Consensus 45 ----------------------~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V 102 (753)
T 3jro_A 45 ----------------------LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 102 (753)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ----------------------cceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCe
Confidence 1236778999999999985 6899999999999999999986 44444 799999
Q ss_pred EEEEEecCC--CCEEEEEECCCeEEEEeCCCc---eEEEEecCCCCEEEEEEcc-------------CCCEEEEEeCCCc
Q 002086 598 TCIQFNPMD--DDYFISGSLDAKVRIWSISDR---LVVDWTDLHEMVTAACYTP-------------DGQNALIGSHKGS 659 (969)
Q Consensus 598 ~sv~fsp~~--~~~L~sgs~Dg~I~IWDl~~~---~~~~~~~~~~~V~sv~fsp-------------dg~~Lasgs~dg~ 659 (969)
++++|+| + +.+|++|+.||.|++||+.++ .......+...|.+++|+| ++.+|++|+.||.
T Consensus 103 ~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 103 NSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred EEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 9999999 7 899999999999999999876 3456677889999999999 5899999999999
Q ss_pred EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC--CceEEEEeCCCcEEEEeCCcce-----EEEEeecCCCCe
Q 002086 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN--PSEVLVTSADSRIRILDGLDIV-----HKFRGFRNTSSQ 732 (969)
Q Consensus 660 I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~--~~~l~sgs~Dg~I~IwD~~~~~-----~~~~~~~~~~~V 732 (969)
|++||++++..... .......|...|++++|+|++ +.++++++.||.|++||..... .......+...|
T Consensus 182 I~iwd~~~~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 257 (753)
T 3jro_A 182 VKIWKYNSDAQTYV----LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257 (753)
T ss_dssp EEEEEEETTTTEEE----EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC
T ss_pred EEEEeccCCcccce----eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce
Confidence 99999987753221 112236789999999999993 4899999999999999966532 222233467789
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++++|+|+|++|++|+.||.|++|++...
T Consensus 258 ~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 258 WRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 99999999999999999999999999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=273.65 Aligned_cols=320 Identities=17% Similarity=0.235 Sum_probs=246.6
Q ss_pred hhhccCCCcce-eeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccch
Q 002086 331 FEKSVGHSPVV-KELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQ 409 (969)
Q Consensus 331 ~~~~~GHs~~V-~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~ 409 (969)
...+.||...| .++.+ ++..+++++.|..+..|.....+ ....+..+.+.+.++.+++.... .
T Consensus 111 ~~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~l~--s------- 174 (445)
T 2ovr_B 111 PKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMRDNIII--S------- 174 (445)
T ss_dssp CEEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC-----EEEECCCCSSCEEEEEEETTEEE--E-------
T ss_pred eEEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCc-----EEEEEcCCCCCEEEEEecCCEEE--E-------
Confidence 34568999875 44443 45678888888888777643322 22233333444455555433211 0
Q ss_pred HHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEee
Q 002086 410 REQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMS 489 (969)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~ 489 (969)
+..++.+. +|++.+.+.+.++.+|...|.+++|+ +++|++|+.||+|++||+.+++.+.
T Consensus 175 --------~~~dg~i~---------vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~-- 233 (445)
T 2ovr_B 175 --------GSTDRTLK---------VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH-- 233 (445)
T ss_dssp --------EETTSCEE---------EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE--
T ss_pred --------EeCCCeEE---------EEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE--
Confidence 11222222 34667778888999999999999996 6789999999999999998765543
Q ss_pred cCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEE
Q 002086 490 EGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLL 569 (969)
Q Consensus 490 ~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~ 569 (969)
.+.+|...|.++.| .+.+|+
T Consensus 234 -----------------------------------------------------------~~~~~~~~v~~~~~-~~~~l~ 253 (445)
T 2ovr_B 234 -----------------------------------------------------------VLMGHVAAVRCVQY-DGRRVV 253 (445)
T ss_dssp -----------------------------------------------------------EEECCSSCEEEEEE-CSSCEE
T ss_pred -----------------------------------------------------------EEcCCcccEEEEEE-CCCEEE
Confidence 56679999999999 568999
Q ss_pred EEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccC
Q 002086 570 SSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPD 647 (969)
Q Consensus 570 Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspd 647 (969)
+|+.||.|++||+.+++++..+ +|...|.+++| ++.+|++++.||.|++||+++++.+. +..+...+.++.+ +
T Consensus 254 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~ 328 (445)
T 2ovr_B 254 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--K 328 (445)
T ss_dssp EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--E
T ss_pred EEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--e
Confidence 9999999999999999998887 69999999999 57899999999999999999887665 4456677888777 4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe--
Q 002086 648 GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG-- 725 (969)
Q Consensus 648 g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~-- 725 (969)
+++|++|+.||.|++||+.+++....... ...|...|++++|++ .++++++.||.|++||..........
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 400 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTGQCLQTLQG-----PNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVT 400 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEEECS-----TTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcc-----CCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeec
Confidence 67999999999999999998876543211 134788999999974 69999999999999997765443333
Q ss_pred ---ecCCCCeEEEEEeCCCCEEEEEeCCCc----EEEEEcCC
Q 002086 726 ---FRNTSSQISAAFNADGKYIISASEDSQ----VYVWKREE 760 (969)
Q Consensus 726 ---~~~~~~V~sl~fspdg~~LaSgs~Dg~----I~IWdl~t 760 (969)
..+...|.+++|+|++.+|++|+.||+ |.|||+..
T Consensus 401 ~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 356778999999999999999999998 99999985
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-27 Score=260.18 Aligned_cols=300 Identities=15% Similarity=0.241 Sum_probs=229.9
Q ss_pred hhccCCCcceeeeecc-cccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchH
Q 002086 332 EKSVGHSPVVKELMRR-ENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQR 410 (969)
Q Consensus 332 ~~~~GHs~~V~~l~~~-~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~ 410 (969)
.++.||+..|++|++. ..+..++|++.|..+..|.....+.........++.+...+.++.|+++...+...
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~------- 104 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG------- 104 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE-------
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE-------
Confidence 3578999999999975 45778999999998888764322111111122233344555666666665443221
Q ss_pred HHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 411 EQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 411 ~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
..++.+. +++............|...+..+.+++++.+|++|+.|+.+++||+.......
T Consensus 105 --------~~d~~i~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~--- 164 (340)
T 4aow_A 105 --------SWDGTLR---------LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT--- 164 (340)
T ss_dssp --------ETTSEEE---------EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE---
T ss_pred --------cccccce---------EEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE---
Confidence 1222222 23455566677788899999999999999999999999999999987543322
Q ss_pred CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---CcE
Q 002086 491 GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---SHL 567 (969)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---~~~ 567 (969)
..+.+|...|.+++|++ ..+
T Consensus 165 ---------------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 165 ---------------------------------------------------------VQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp ---------------------------------------------------------ECSSSCSSCEEEEEECSCSSSCE
T ss_pred ---------------------------------------------------------EEeccccCcccceEEccCCCCcE
Confidence 13456889999999986 468
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEcc
Q 002086 568 LLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTP 646 (969)
Q Consensus 568 L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fsp 646 (969)
+++++.|++|++||+.+++++..+ +|...|++++|+| ++.+|++|+.||.|++||+++.+.+....+...|.+++|+|
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~ 266 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP 266 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC
Confidence 899999999999999999998877 7999999999999 99999999999999999999999988888889999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeee-ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 647 DGQNALIGSHKGSCRLYSIEDSKLHQLNQVD-FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 647 dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~-~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
++.+ ++++.|+.|++||+++.......... .......|...|++++|+|++ .+|++|+.||.|+|||+.+
T Consensus 267 ~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 267 NRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG-QTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp SSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEC
T ss_pred CCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEeCCC
Confidence 8754 55667999999999988765433221 122335788999999999998 7999999999999999654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-27 Score=269.96 Aligned_cols=294 Identities=13% Similarity=0.184 Sum_probs=228.0
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+....+|...+.+.++++++..|++++.|+.|+|||+.+++.....
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~---------------------------------- 129 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALA---------------------------------- 129 (401)
T ss_dssp EEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEE----------------------------------
T ss_pred eeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEee----------------------------------
Confidence 3345577776544444434456888999999999999987765421
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEE
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~ 601 (969)
...|...|.+++|+| +.+|++|+.||.|++||+.+++.+..+ +|...|.+++
T Consensus 130 --------------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 183 (401)
T 4aez_A 130 --------------------------ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLS 183 (401)
T ss_dssp --------------------------ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred --------------------------ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEE
Confidence 123788999999999 889999999999999999999988887 8999999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCC-c-eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISD-R-LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~-~-~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
|+ +.+|++++.||.|++||++. . ....+..|...|.+++|+|++.+|++|+.||.|++||+++++.....
T Consensus 184 ~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~----- 255 (401)
T 4aez_A 184 WN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK----- 255 (401)
T ss_dssp EE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE-----
T ss_pred EC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe-----
Confidence 95 57999999999999999984 3 35566778899999999999999999999999999999987654332
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEe--CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe--CCCcEEE
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTS--ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS--EDSQVYV 755 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs--~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs--~Dg~I~I 755 (969)
..|...|.+++|+|++..++++++ .|+.|++||......... ..+...+.+++|+|++++|++++ .||.|+|
T Consensus 256 ---~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v 331 (401)
T 4aez_A 256 ---TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT-VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331 (401)
T ss_dssp ---CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE-EECSSCEEEEEECSSSSEEEEEECTTTCEEEE
T ss_pred ---cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE-EeCCCcEEEEEECCCCCeEEEEeecCCCcEEE
Confidence 568889999999998877788766 799999999776544333 24567899999999999999954 8999999
Q ss_pred EEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCC
Q 002086 756 WKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSR 835 (969)
Q Consensus 756 Wdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~ 835 (969)
|++.+++.. .......+ ........++|++.++++++.+
T Consensus 332 ~~~~~~~~~----~~~~~~~h-------------------------------------~~~v~~~~~s~dg~~l~s~~~d 370 (401)
T 4aez_A 332 WSYSSSGLT----KQVDIPAH-------------------------------------DTRVLYSALSPDGRILSTAASD 370 (401)
T ss_dssp EEEETTEEE----EEEEEECC-------------------------------------SSCCCEEEECTTSSEEEEECTT
T ss_pred EecCCccce----eEEEecCC-------------------------------------CCCEEEEEECCCCCEEEEEeCC
Confidence 999873110 00000000 0112234678999999999999
Q ss_pred CccccCCCCCCcccc
Q 002086 836 RLLPPLPKKTNKVER 850 (969)
Q Consensus 836 ~~L~~~~~~s~~~~~ 850 (969)
+.+..|...++....
T Consensus 371 g~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 371 ENLKFWRVYDGDHVK 385 (401)
T ss_dssp SEEEEEECCC-----
T ss_pred CcEEEEECCCCcccc
Confidence 999999887665443
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=291.08 Aligned_cols=257 Identities=14% Similarity=0.113 Sum_probs=200.6
Q ss_pred eeEecccccCEEEEEEeCC------CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 444 CQEIQAHEGSIWTIKFSLD------ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpD------g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
...+.+|.+.|++|+|+|+ +.+||+|+.||+|+|||+.+++....
T Consensus 200 ~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~----------------------------- 250 (524)
T 2j04_B 200 VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH----------------------------- 250 (524)
T ss_dssp EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS-----------------------------
T ss_pred EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc-----------------------------
Confidence 3557789999999999997 57999999999999999975432100
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc-EEE-EeecCC
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS-CLK-LFAHND 595 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~-~i~-~~~h~~ 595 (969)
......++...+.+|...|++++|+++..|++|+.||+|++||+.++. +.. ..+|..
T Consensus 251 ---------------------~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~ 309 (524)
T 2j04_B 251 ---------------------VFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS 309 (524)
T ss_dssp ---------------------EEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSS
T ss_pred ---------------------cceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccc
Confidence 000011234467899999999999987799999999999999999764 333 348999
Q ss_pred CeEEE--EEecCCC-CEEEEEECCCeEEEEeCCCceEE-EEecCC--CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 596 YVTCI--QFNPMDD-DYFISGSLDAKVRIWSISDRLVV-DWTDLH--EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 596 ~V~sv--~fsp~~~-~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~--~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
.|++| +|+| ++ .+|++|+.|++|+|||+++++.. .+..+. ..|.+++|+|+++.|++++.|++|++||++.+.
T Consensus 310 ~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~ 388 (524)
T 2j04_B 310 YILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF 388 (524)
T ss_dssp CEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT
T ss_pred cEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc
Confidence 99999 4566 66 89999999999999999886543 222333 347899999999999999999999999999876
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc----c-e---------EE-------------
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD----I-V---------HK------------- 722 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~----~-~---------~~------------- 722 (969)
.... ..+|...|++++|+|++ ..|++|+.|++|++||... . . ..
T Consensus 389 ~~~~--------l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~ 459 (524)
T 2j04_B 389 AVHP--------LVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYR 459 (524)
T ss_dssp CCEE--------EEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEE
T ss_pred ccee--------eecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEE
Confidence 5332 14689999999999998 6899999999999998321 0 0 00
Q ss_pred -----------------EEeecCCCCeEEEEEeCCC---CEEEEEeCCCcEEEEEcCC
Q 002086 723 -----------------FRGFRNTSSQISAAFNADG---KYIISASEDSQVYVWKREE 760 (969)
Q Consensus 723 -----------------~~~~~~~~~V~sl~fspdg---~~LaSgs~Dg~I~IWdl~t 760 (969)
.....|...|.+++|+|++ ..||+|+.||.|+||++.-
T Consensus 460 ~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 460 IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 1112355678899999995 4999999999999999974
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=276.86 Aligned_cols=255 Identities=18% Similarity=0.279 Sum_probs=211.1
Q ss_pred eeeEecccccCEEEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 443 LCQEIQAHEGSIWTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
.+..+.+|.+.|++++|+| ++++|++|+.||+|+|||+.++....
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~---------------------------------- 118 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL---------------------------------- 118 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----------------------------------
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----------------------------------
Confidence 3456889999999999999 99999999999999999998653211
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEECCCCcEEEEe---ecCCC
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-S-HLLLSSSMDKTVRLWDMETKSCLKLF---AHNDY 596 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~-~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~ 596 (969)
...+++..+.+|...|.+++|+| + .+|++++.|++|++||+.+++++..+ .|...
T Consensus 119 --------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 119 --------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp --------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred --------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 01123457889999999999999 4 69999999999999999999998877 59999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCC-EEEEEEccCCCEEEEE---eCCCcEEEEEcCCCce
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEM-VTAACYTPDGQNALIG---SHKGSCRLYSIEDSKL 670 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~-V~sv~fspdg~~Lasg---s~dg~I~IwDl~~~~~ 670 (969)
|.+++|+| ++.+|++++.||.|++||+++++.+... .|... +.+++|+|++.+|++| +.|+.|++||+++...
T Consensus 179 v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 179 IYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred eEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence 99999999 9999999999999999999998877654 55554 8999999999999999 7899999999988654
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc---eEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI---VHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
.... ....+...+.+++|+|++..++++++.|+.|++||.... ...+..+.+...|.+++|+|++.++++
T Consensus 258 ~~~~------~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s- 330 (402)
T 2aq5_A 258 PLSL------QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN- 330 (402)
T ss_dssp CSEE------EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-
T ss_pred CceE------EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-
Confidence 1111 113466789999999998444456668999999996643 456666767788999999999998875
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
.++.+++|++.+
T Consensus 331 -~~~~~~~~~l~~ 342 (402)
T 2aq5_A 331 -KCEIARFYKLHE 342 (402)
T ss_dssp -GTEEEEEEEEET
T ss_pred -cceeEEEEEcCC
Confidence 567999999987
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=263.49 Aligned_cols=244 Identities=10% Similarity=0.051 Sum_probs=200.8
Q ss_pred ecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEec-ccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 447 IQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEV-QECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl-~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
+.+|.+.|++++|+|+++ +|++|+.||.|++||+ .+++.
T Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--------------------------------------- 92 (342)
T 1yfq_A 52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF--------------------------------------- 92 (342)
T ss_dssp EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE---------------------------------------
T ss_pred eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce---------------------------------------
Confidence 457999999999999999 9999999999999998 76533
Q ss_pred CCCCCCCcccccceeeecCCCceeEecc--CCCCEEEEEecCCcEEEEEeCCCcEEEEECCC---------CcEEEEeec
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIG--HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMET---------KSCLKLFAH 593 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~g--H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t---------~~~i~~~~h 593 (969)
..+.+ |...|.+++|+++.+|++++.|+.|++||+.+ ++++..+.|
T Consensus 93 -----------------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 149 (342)
T 1yfq_A 93 -----------------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV 149 (342)
T ss_dssp -----------------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred -----------------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEee
Confidence 14456 99999999999988999999999999999988 777777789
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ce---EEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCC
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RL---VVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~---~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~ 668 (969)
...|.+++|+| +. |++++.|+.|++||+++ +. ......+...+.+++|+| ++++|++++.+|.|++|++...
T Consensus 150 ~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 150 KNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred CCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 99999999997 44 99999999999999988 43 234456778899999999 9999999999999999999876
Q ss_pred ------ceeeeeeeee-cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecC-CCCeEEEEEeCC
Q 002086 669 ------KLHQLNQVDF-QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRN-TSSQISAAFNAD 740 (969)
Q Consensus 669 ------~~~~~~~~~~-~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~-~~~V~sl~fspd 740 (969)
+......... ......|...|.+++|+|++ .+|++++.||.|++||............+ ...|.+++ |+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~ 303 (342)
T 1yfq_A 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CS 303 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--EC
T ss_pred CcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CC
Confidence 3222211000 00011335599999999988 78999999999999998877666666666 78899998 99
Q ss_pred CCEEEEEeCCCc-EEEEEc
Q 002086 741 GKYIISASEDSQ-VYVWKR 758 (969)
Q Consensus 741 g~~LaSgs~Dg~-I~IWdl 758 (969)
+++|++++.||+ .+.|..
T Consensus 304 ~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 304 DNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SSEEEEEEECTHHHHCSSS
T ss_pred CCeEEEEecCCcccccccc
Confidence 999999999999 666554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=273.95 Aligned_cols=258 Identities=22% Similarity=0.305 Sum_probs=209.9
Q ss_pred eEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 445 QEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
..+.+|.+.|++|+|+|+ +.+||+++.||.|+|||+.+......
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~----------------------------------- 166 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE----------------------------------- 166 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------------------------
Confidence 346689999999999997 77999999999999999875211000
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcE-------EEEe-ec
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSC-------LKLF-AH 593 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~-------i~~~-~h 593 (969)
.....+++..+.+|...|++++|++ +. +|++|+.||+|++||+..+.. ...+ .|
T Consensus 167 ----------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h 230 (430)
T 2xyi_A 167 ----------------PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH 230 (430)
T ss_dssp ----------------TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCC
T ss_pred ----------------ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCC
Confidence 0001234557889999999999999 55 999999999999999987421 2233 79
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCC
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~ 668 (969)
...|.+++|+|.++.+|++++.||.|++||++++ .+..+..|...|++++|+|++. +|++|+.||.|++||++..
T Consensus 231 ~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence 9999999999967789999999999999999876 3445567889999999999987 6889999999999999974
Q ss_pred ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--------------ceEEEEeecCCCCeEE
Q 002086 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--------------IVHKFRGFRNTSSQIS 734 (969)
Q Consensus 669 ~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--------------~~~~~~~~~~~~~V~s 734 (969)
... ......|...|++++|+|++..+|++++.|+.|+|||+.. ....+....|...|.+
T Consensus 311 ~~~-------~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 383 (430)
T 2xyi_A 311 KLK-------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 383 (430)
T ss_dssp TSC-------SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE
T ss_pred CCC-------eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceE
Confidence 321 1112568899999999999877899999999999999765 2334444556778999
Q ss_pred EEEeCCCC-EEEEEeCCCcEEEEEcCC
Q 002086 735 AAFNADGK-YIISASEDSQVYVWKREE 760 (969)
Q Consensus 735 l~fspdg~-~LaSgs~Dg~I~IWdl~t 760 (969)
++|+|++. +|++++.||.|+||++.+
T Consensus 384 ~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 384 FSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEECCCCCCEEEEEECCCCEEEeEccc
Confidence 99999999 999999999999999976
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=277.42 Aligned_cols=297 Identities=13% Similarity=0.201 Sum_probs=215.7
Q ss_pred eEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEE---eecCCCeEEEEEecCCCCEEEEEECCCeEEEE
Q 002086 548 CSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKL---FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW 622 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~---~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IW 622 (969)
....+|...|++|+|+| +.+|++|+.||+|+|||+.+++.... .+|.+.|++|+|+|.++++|++|+.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 35678999999999998 57999999999999999987764433 37999999999998678999999999999999
Q ss_pred eCCCceEEEEecCC---CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 623 SISDRLVVDWTDLH---EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 623 Dl~~~~~~~~~~~~---~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
|++++....+..+. ..+.+++|+|++.+|++|+.||.|++||++..... ....|...|++++|+|++.
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~---------~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW---------NLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC---------CSBCCSSCEEEEEECTTCS
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE---------EEecccceEEeeeecCCCc
Confidence 99987765554433 45789999999999999999999999999764321 2267899999999999987
Q ss_pred ceEEEEeCCCcEEEEeCCcceE---EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEeccc
Q 002086 700 SEVLVTSADSRIRILDGLDIVH---KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRN 776 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~~~---~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~ 776 (969)
.++++++.|+.|+|||+..... ......|...|++++|+|+|.+|++++.||.|+|||+.+++. ......+
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~------~~~~~~~ 337 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC------PLGLIPH 337 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS------EEEECCC
T ss_pred eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc------ceEEecc
Confidence 7899999999999999764321 122345778899999999999999999999999999987432 2222111
Q ss_pred CCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccC-CCCccccCCCCCCccccCCC-C
Q 002086 777 HEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGH-SRRLLPPLPKKTNKVERVPS-P 854 (969)
Q Consensus 777 ~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~-~~~~L~~~~~~s~~~~~~l~-~ 854 (969)
..... .+.. .....+ ..........+++++...++.+ .+..+..|...++....++. .
T Consensus 338 ~~~~~--------~~~~------~~~~~~------~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~ 397 (435)
T 4e54_B 338 PHRHF--------QHLT------PIKAAW------HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397 (435)
T ss_dssp CCCCC--------SSSC------CCBCEE------CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS
T ss_pred ccccc--------ccce------eEEEEE------cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC
Confidence 11000 0000 000011 1112223444566666655544 44578899888887776665 4
Q ss_pred CCCCcccc-ccCCCCCCccccC-CCccc
Q 002086 855 PEEELSLI-SHDPGISESFTSN-SSSIR 880 (969)
Q Consensus 855 pee~l~~i-s~hP~~~~~~~~s-~~~~r 880 (969)
+...+.++ .+||... .|+++ +.+++
T Consensus 398 ~~~~v~s~~~fspdg~-~lasg~d~~i~ 424 (435)
T 4e54_B 398 ESSGISSLNEFNPMGD-TLASAMGYHIL 424 (435)
T ss_dssp SCCCCCCEEEECTTSS-CEEEECSSEEE
T ss_pred CCCcEEEEEEECCCCC-EEEEEcCCcEE
Confidence 55566666 4688754 44443 44444
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-26 Score=262.73 Aligned_cols=283 Identities=15% Similarity=0.205 Sum_probs=227.2
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
.++.|+||++ ++||+|. |++|+|||+.+|+++..+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~------------------------------------------- 141 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL------------------------------------------- 141 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE-------------------------------------------
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE-------------------------------------------
Confidence 3678999975 5777765 999999999998876532
Q ss_pred ccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEE
Q 002086 533 VHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYF 610 (969)
Q Consensus 533 ~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L 610 (969)
.+.+|...|++|+|+| +++|++|+.||+|+|||+.+++++..+ +|...|.++.++ +.+|
T Consensus 142 ----------------~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l 202 (420)
T 4gga_A 142 ----------------QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYIL 202 (420)
T ss_dssp ----------------ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEE
T ss_pred ----------------EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEE
Confidence 3456889999999999 899999999999999999999998887 899999999885 5899
Q ss_pred EEEECCCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC
Q 002086 611 ISGSLDAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK 688 (969)
Q Consensus 611 ~sgs~Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~ 688 (969)
++|+.|+.+++||.... .+..+..|...+..+.++|++.++++++.|+.|++|++..++.... .......|...
T Consensus 203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~----~~~~~~~~~~~ 278 (420)
T 4gga_A 203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV----PLQTFTQHQGA 278 (420)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC----CSEEECCCSSC
T ss_pred EEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce----eeeeecccCCc
Confidence 99999999999999764 3455677889999999999999999999999999999988764221 11223678889
Q ss_pred eEEEEEcCCCCceEEEE--eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCCcc
Q 002086 689 ITGFQFSPSNPSEVLVT--SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS--EDSQVYVWKREEHRNA 764 (969)
Q Consensus 689 It~l~fspd~~~~l~sg--s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs--~Dg~I~IWdl~t~~~~ 764 (969)
|.+++|+|.+..+++++ +.|++|++||..+........ ....+.++.|+++++.|++++ .|+.|+|||+.++
T Consensus 279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~--- 354 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--- 354 (420)
T ss_dssp EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---
T ss_pred eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---
Confidence 99999999987777765 479999999988765544433 456789999999999998876 7999999999873
Q ss_pred CCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCC
Q 002086 765 STGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKK 844 (969)
Q Consensus 765 ~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~ 844 (969)
+.+..+..+...+ ...+++|++.++++++.|+.+..|...
T Consensus 355 ---~~v~~l~gH~~~V-------------------------------------~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 355 ---AKVAELKGHTSRV-------------------------------------LSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp ---CEEEEECCCSSCE-------------------------------------EEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred ---cEEEEEcCCCCCE-------------------------------------EEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 3333332222211 123568999999999999999999765
Q ss_pred CCc
Q 002086 845 TNK 847 (969)
Q Consensus 845 s~~ 847 (969)
...
T Consensus 395 ~~~ 397 (420)
T 4gga_A 395 ELD 397 (420)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=263.21 Aligned_cols=273 Identities=13% Similarity=0.063 Sum_probs=204.9
Q ss_pred eeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc-------EEEEeecCCCeEEEEEecCC----C---CEEEE
Q 002086 547 FCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS-------CLKLFAHNDYVTCIQFNPMD----D---DYFIS 612 (969)
Q Consensus 547 ~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~-------~i~~~~h~~~V~sv~fsp~~----~---~~L~s 612 (969)
...+.+|.+.|++++|++ ++|++|+.||+|++||+.+++ ......|...|.+++|+| + + .+|++
T Consensus 9 ~~~~~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEE
Confidence 346789999999999999 999999999999999999987 444558999999999999 7 8 89999
Q ss_pred EECCCeEEEEeCCCce------EEEEecC-----CCCEEEEEEc----cCCCE-EEEEeCCCcEEEEEcCC------Cce
Q 002086 613 GSLDAKVRIWSISDRL------VVDWTDL-----HEMVTAACYT----PDGQN-ALIGSHKGSCRLYSIED------SKL 670 (969)
Q Consensus 613 gs~Dg~I~IWDl~~~~------~~~~~~~-----~~~V~sv~fs----pdg~~-Lasgs~dg~I~IwDl~~------~~~ 670 (969)
++.||.|++||+.++. ...+..+ ...|.+++|+ |++.+ |++++.||.|++||+.. .+.
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 9999999999998877 5555666 4889999999 99999 99999999999999987 443
Q ss_pred eeeeee-eec---ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeec---C---CCCeEEEEEeCC
Q 002086 671 HQLNQV-DFQ---TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFR---N---TSSQISAAFNAD 740 (969)
Q Consensus 671 ~~~~~~-~~~---~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~---~---~~~V~sl~fspd 740 (969)
...... .+. .....|...|.+++|+|++ ++++++.|+.|++||............ | ...|.+++|+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 220000 000 0014578899999999987 999999999999999876655555544 6 788999999999
Q ss_pred CCEEEEEeCC---CcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCC
Q 002086 741 GKYIISASED---SQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNP 817 (969)
Q Consensus 741 g~~LaSgs~D---g~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~ 817 (969)
+.+|++++.| |.|++||+.++ +.+.........- . . ...........
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~------~~~~~~~~~~~~~--------------------~-~---~~~~~~~~~~v 294 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFG------ERIGSLSVPTHSS--------------------Q-A---SLGEFAHSSWV 294 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTC------CEEEEECBC--------------------------------CCBSBSSCE
T ss_pred CCEEEEEecCCCCceEEEEECCCC------cccceeccCcccc--------------------c-c---cccccccCCcE
Confidence 9999999999 99999999874 2222221100000 0 0 00000011223
Q ss_pred cccccCCCCCCccccCCCCccccCCCCCCccccCCC
Q 002086 818 TSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPS 853 (969)
Q Consensus 818 ~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~ 853 (969)
....++|++.++++++.++.+..|...++.....+.
T Consensus 295 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 295 MSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 345678899999999999999999887776555544
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=253.05 Aligned_cols=251 Identities=14% Similarity=0.171 Sum_probs=194.4
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC--cEEEEe-ecCCCeEEEEEecC-CCCEEEEEECCCeEEEEe
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK--SCLKLF-AHNDYVTCIQFNPM-DDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~--~~i~~~-~h~~~V~sv~fsp~-~~~~L~sgs~Dg~I~IWD 623 (969)
.+.+|.+.|++++|++ +++|++|+.|++|+|||+... +++..+ +|.+.|++++|++. ++.+|++|+.|++|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 5778999999999999 899999999999999999753 555555 89999999999762 378999999999999999
Q ss_pred CCCce---EEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 624 ISDRL---VVDWTDLHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 624 l~~~~---~~~~~~~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
+.++. +..+..|...|.+++|+|+ +.+|++++.|+.|++||++....... .....|...|.+++|+|+.
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~------~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP------IIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC------EEEECCSSCEEEEEECCCC
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee------eeeecccCccceEeecCCc
Confidence 98763 3455668889999999997 89999999999999999987642211 1125788899999999973
Q ss_pred ------------CceEEEEeCCCcEEEEeCCcce----EEEEeecCCCCeEEEEEeCCC---CEEEEEeCCCcEEEEEcC
Q 002086 699 ------------PSEVLVTSADSRIRILDGLDIV----HKFRGFRNTSSQISAAFNADG---KYIISASEDSQVYVWKRE 759 (969)
Q Consensus 699 ------------~~~l~sgs~Dg~I~IwD~~~~~----~~~~~~~~~~~V~sl~fspdg---~~LaSgs~Dg~I~IWdl~ 759 (969)
..+|++++.|++|++||..... .......|...|.+++|+|++ .+|++++.|++|+|||+.
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 3689999999999999965422 223344577889999999984 899999999999999997
Q ss_pred CCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccc
Q 002086 760 EHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLP 839 (969)
Q Consensus 760 t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~ 839 (969)
+.... .......... .........++|++.++++++.++.+.
T Consensus 238 ~~~~~----~~~~~~~~~~----------------------------------~~~~v~~~~~s~~g~~las~~~D~~v~ 279 (297)
T 2pm7_B 238 NEQGP----WKKTLLKEEK----------------------------------FPDVLWRASWSLSGNVLALSGGDNKVT 279 (297)
T ss_dssp STTSC----CEEEESSSSC----------------------------------CSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred CCCCc----cceeeeeccc----------------------------------CCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 63210 0000000000 000112345788898999999999999
Q ss_pred cCCC
Q 002086 840 PLPK 843 (969)
Q Consensus 840 ~~~~ 843 (969)
.|..
T Consensus 280 lw~~ 283 (297)
T 2pm7_B 280 LWKE 283 (297)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9954
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=266.48 Aligned_cols=246 Identities=22% Similarity=0.441 Sum_probs=203.6
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+|++.+++....+.+|.+.|++++| ++++|++|+.||+|+|||+.+++.+.
T Consensus 157 iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~--------------------------- 207 (435)
T 1p22_A 157 IWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN--------------------------- 207 (435)
T ss_dssp EEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE---------------------------
T ss_pred EEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE---------------------------
Confidence 3466677788889999999999998 78899999999999999998766543
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEE---EE-
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCL---KL- 590 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i---~~- 590 (969)
.+.+|...|.+++|++ ++|++|+.||+|++||+.++... ..
T Consensus 208 ----------------------------------~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 252 (435)
T 1p22_A 208 ----------------------------------TLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVL 252 (435)
T ss_dssp ----------------------------------EECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEE
T ss_pred ----------------------------------EEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEe
Confidence 5667999999999985 69999999999999999987754 23
Q ss_pred eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 591 FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 591 ~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
.+|...|.+++| ++++|++|+.||.|++||+++++.+. +..|...|.++.| ++.++++|+.||.|++||+++++
T Consensus 253 ~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 253 VGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp CCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCC
Confidence 389999999999 47899999999999999999987665 4557788999999 46899999999999999999887
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce---------EEEEeecCCCCeEEEEEeCC
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV---------HKFRGFRNTSSQISAAFNAD 740 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~---------~~~~~~~~~~~V~sl~fspd 740 (969)
..... ..|...|.+++|. + .+|++|+.||.|++||..... .......|...|.+++| +
T Consensus 328 ~~~~~--------~~h~~~v~~~~~~--~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~ 394 (435)
T 1p22_A 328 CLRVL--------EGHEELVRCIRFD--N-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--D 394 (435)
T ss_dssp EEEEE--------CCCSSCEEEEECC--S-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--C
T ss_pred EEEEE--------eCCcCcEEEEEec--C-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--C
Confidence 65432 5688999999993 3 789999999999999954322 34444567778999999 7
Q ss_pred CCEEEEEeCCCcEEEEEcCCCC
Q 002086 741 GKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+.+|++|+.||.|++||+.+..
T Consensus 395 ~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 395 EFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp SSCEEECCSSSEEEEEC-----
T ss_pred CCEEEEEeCCCEEEEEECCCCC
Confidence 8899999999999999998743
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.2e-26 Score=261.56 Aligned_cols=234 Identities=20% Similarity=0.326 Sum_probs=202.4
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
...+|...|+|+.| ++++|++|+.||+|+|||+.+++.+.
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~-------------------------------------- 167 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR-------------------------------------- 167 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE--------------------------------------
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE--------------------------------------
Confidence 34567888999988 79999999999999999998766544
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEec
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNP 604 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp 604 (969)
.+.+|.+.|.+++| .+++|++|+.||+|++||+.+++++..+ .|...|.+++|+
T Consensus 168 -----------------------~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~- 222 (435)
T 1p22_A 168 -----------------------ILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN- 222 (435)
T ss_dssp -----------------------EECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC-
T ss_pred -----------------------EEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc-
Confidence 56689999999999 5689999999999999999999998887 799999999996
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceE----EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLV----VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT 680 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~----~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~ 680 (969)
+++|++|+.||.|++||+.++.. .....|...|.+++| ++++|++|+.||.|++||+++++.....
T Consensus 223 --~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~------ 292 (435)
T 1p22_A 223 --NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL------ 292 (435)
T ss_dssp --TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE------
T ss_pred --CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE------
Confidence 46999999999999999987653 345678889999999 7889999999999999999998765432
Q ss_pred cccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 681 KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 681 ~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..|...|.++.|++ .++++++.|+.|++||............|...|.+++| ++.+|++|+.||.|++||+.+
T Consensus 293 --~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 293 --NGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp --ECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred --cCCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 56888999999953 69999999999999998876665555667888999988 789999999999999999976
Q ss_pred C
Q 002086 761 H 761 (969)
Q Consensus 761 ~ 761 (969)
+
T Consensus 366 ~ 366 (435)
T 1p22_A 366 A 366 (435)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-25 Score=243.70 Aligned_cols=279 Identities=15% Similarity=0.224 Sum_probs=221.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
+.+|+||+++ +||+| .|++|+|||+.+++++..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-------------------------------------------- 61 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-------------------------------------------- 61 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE--------------------------------------------
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE--------------------------------------------
Confidence 4679999886 77766 4999999999998876632
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEE
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~ 611 (969)
.+.+|...|++++|++ +++|++|+.||+|++||+.+++++..+ +|...+.++.+. +..++
T Consensus 62 ---------------~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~ 123 (318)
T 4ggc_A 62 ---------------QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILS 123 (318)
T ss_dssp ---------------ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEE
T ss_pred ---------------EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEE
Confidence 3456889999999999 899999999999999999999998877 788888887764 68999
Q ss_pred EEECCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCe
Q 002086 612 SGSLDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI 689 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I 689 (969)
+++.++.+++|+..... +.....|...+..+.+.+++++|++++.||.|++||+.+++..... ......+...|
T Consensus 124 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~v 199 (318)
T 4ggc_A 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQGAV 199 (318)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC----SEEECCCCSCE
T ss_pred EEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc----eeeecccCCce
Confidence 99999999999998753 4556778899999999999999999999999999999887643221 12225677889
Q ss_pred EEEEEcCCCCceEE--EEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEEcCCCCccC
Q 002086 690 TGFQFSPSNPSEVL--VTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS--EDSQVYVWKREEHRNAS 765 (969)
Q Consensus 690 t~l~fspd~~~~l~--sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs--~Dg~I~IWdl~t~~~~~ 765 (969)
.++.++|.+...+. +++.++.|++||........ ...+...+..+.|++++.++++++ .|+.|+|||+.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---- 274 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---- 274 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC----
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC----
Confidence 99999998866654 44678999999976654433 344567799999999999888765 7999999999873
Q ss_pred CCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCC
Q 002086 766 TGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKK 844 (969)
Q Consensus 766 t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~ 844 (969)
+.+..+..+...+ ...+++|++.++++++.|+.+..|...
T Consensus 275 --~~~~~l~gH~~~V-------------------------------------~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 275 --AKVAELKGHTSRV-------------------------------------LSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp --CEEEEECCCSSCE-------------------------------------EEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred --cEEEEEcCCCCCE-------------------------------------EEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 3333332222221 123568888899999999999999654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-26 Score=257.26 Aligned_cols=291 Identities=15% Similarity=0.191 Sum_probs=223.6
Q ss_pred CCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe--------------ecCCCeEEEEEecCCC
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF--------------AHNDYVTCIQFNPMDD 607 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~--------------~h~~~V~sv~fsp~~~ 607 (969)
.+....+.+|.+.|++++|+| +++|++|+.||.|++||+.+++....+ +|...|.+++|+|.++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 345567888999999999998 689999999999999999987654433 3999999999999667
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCC---CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 608 DYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDG---QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg---~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
.+|++++.||.|++||+.+++......+...+.++.|++.+ .++++++.+|.|++||+.+++..... ..
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--------~~ 184 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL--------QG 184 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE--------CC
T ss_pred cEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee--------cC
Confidence 79999999999999999999998888889999999999954 49999999999999999987654332 56
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe----------------ecCCCCeEEEEEeCCCCEEEEEe
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG----------------FRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~----------------~~~~~~V~sl~fspdg~~LaSgs 748 (969)
|...|.+++|+|++..++++++.|+.|++||.......+.. ..+...|.+++|+|++++|++++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 88999999999998657999999999999997643211111 34677899999999999999999
Q ss_pred CCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCC
Q 002086 749 EDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEG 828 (969)
Q Consensus 749 ~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~ 828 (969)
.||.|++||+.+++...... ....... ............+..
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~------~~~~~~~--------------------------------~~~~~~~~~~~~~~~ 306 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNY------GKVCNNS--------------------------------KKGLKFTVSCGCSSE 306 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCC------CCCCCCC--------------------------------SSCCCCEECCSSSSC
T ss_pred CCCeEEEEECCCCccceecc------ccccccc--------------------------------cccceeEEecCCCce
Confidence 99999999999854322111 0000000 000000011111223
Q ss_pred ccccCCCCccccCCCCCCccccCCCCCCCCccccccCCCCCCccccC-CCccc
Q 002086 829 SPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLISHDPGISESFTSN-SSSIR 880 (969)
Q Consensus 829 i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~is~hP~~~~~~~~s-~~~~r 880 (969)
++..+.++.+..|...++.....+..|...+.++.++|....+++.+ +..++
T Consensus 307 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 359 (408)
T 4a11_B 307 FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359 (408)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred EEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEE
Confidence 44456677889998888888888888999999999999876566554 44555
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-26 Score=262.51 Aligned_cols=285 Identities=15% Similarity=0.255 Sum_probs=201.6
Q ss_pred cceeeeEecccc------------cCEEEEEEeCCC--CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCC
Q 002086 440 ALHLCQEIQAHE------------GSIWTIKFSLDA--RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSD 505 (969)
Q Consensus 440 ~~~l~~~L~gH~------------~~I~~l~fSpDg--~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~ 505 (969)
.+++...+++|. +.|++|+|+|++ .+|++++.|++|+|||+.+++......... ...
T Consensus 70 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~---------~~~ 140 (447)
T 3dw8_B 70 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLK---------EED 140 (447)
T ss_dssp CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC------------
T ss_pred ceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceeccc---------Ccc
Confidence 344688899998 899999999998 799999999999999998766543110000 000
Q ss_pred CCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEe-ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC
Q 002086 506 KASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSF-IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME 583 (969)
Q Consensus 506 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l-~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~ 583 (969)
|..... .......+.......+.....+...+ .+|...|.+++|+| +.+|++| .|++|++||+.
T Consensus 141 ------g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 206 (447)
T 3dw8_B 141 ------GRYRDP-------TTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLE 206 (447)
T ss_dssp -----------C-------CCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETT
T ss_pred ------ccccCc-------ccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECC
Confidence 000000 00000000000000011112222333 68999999999999 7899998 89999999999
Q ss_pred -CCcEEEEe--------ecCCCeEEEEEecCCC-CEEEEEECCCeEEEEeCCCceE-----EEEecCCC-----------
Q 002086 584 -TKSCLKLF--------AHNDYVTCIQFNPMDD-DYFISGSLDAKVRIWSISDRLV-----VDWTDLHE----------- 637 (969)
Q Consensus 584 -t~~~i~~~--------~h~~~V~sv~fsp~~~-~~L~sgs~Dg~I~IWDl~~~~~-----~~~~~~~~----------- 637 (969)
.++++..+ +|...|++++|+| ++ .+|++|+.||.|++||++++.. ..+..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (447)
T 3dw8_B 207 ITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEII 285 (447)
T ss_dssp EEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHT
T ss_pred CCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccC
Confidence 45555533 7999999999999 76 9999999999999999998774 44555554
Q ss_pred -CEEEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeeeeeeeecccccCCCC---------------CeEEEEEcCCCCc
Q 002086 638 -MVTAACYTPDGQNALIGSHKGSCRLYSIED-SKLHQLNQVDFQTKKKSSTR---------------KITGFQFSPSNPS 700 (969)
Q Consensus 638 -~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~~~~~~~~~~~~~~~~~h~~---------------~It~l~fspd~~~ 700 (969)
.|.+++|+|++++|++++. +.|++||++. ++...... .|.. .+..++|+|++ .
T Consensus 286 ~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~ 355 (447)
T 3dw8_B 286 SSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ--------VHEYLRSKLCSLYENDCIFDKFECCWNGSD-S 355 (447)
T ss_dssp TCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE--------SCGGGTTTHHHHHHTSGGGCCCCEEECTTS-S
T ss_pred ceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee--------ccccccccccccccccccccceEEEECCCC-C
Confidence 8999999999999999999 9999999986 55433221 1211 13459999998 7
Q ss_pred eEEEEeCCCcEEEEeCCcceEE-EEee-------------------------------cCCCCeEEEEEeCCCCEEEEEe
Q 002086 701 EVLVTSADSRIRILDGLDIVHK-FRGF-------------------------------RNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 701 ~l~sgs~Dg~I~IwD~~~~~~~-~~~~-------------------------------~~~~~V~sl~fspdg~~LaSgs 748 (969)
+|++++.|+.|++||....... +..+ .....|..++|+|++.+||+++
T Consensus 356 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~ 435 (447)
T 3dw8_B 356 VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVAT 435 (447)
T ss_dssp EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEEC
T ss_pred EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEe
Confidence 8999999999999997654322 2211 2235688999999999999998
Q ss_pred CCCcEEEEEcC
Q 002086 749 EDSQVYVWKRE 759 (969)
Q Consensus 749 ~Dg~I~IWdl~ 759 (969)
.++ +++|.-+
T Consensus 436 ~~~-~~~~~~~ 445 (447)
T 3dw8_B 436 TNN-LYIFQDK 445 (447)
T ss_dssp SSC-EEEEECC
T ss_pred cce-eeeeccc
Confidence 775 8888754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-26 Score=253.66 Aligned_cols=250 Identities=15% Similarity=0.230 Sum_probs=200.3
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
..+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+.
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~------------------------------------- 122 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ------------------------------------- 122 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-------------------------------------
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-------------------------------------
Confidence 4467899999999999999999999999999999998766543
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEe--cC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSW--SR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQ 601 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~f--s~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~ 601 (969)
+.+|...|.+++| ++ +.+|++++.||.|++||+.+++++..+.....+.++.
T Consensus 123 -------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 3mmy_A 123 -------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCAD 177 (368)
T ss_dssp -------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEE
T ss_pred -------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEE
Confidence 3458999999999 77 6889999999999999999999998887777888888
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEEE---ecCCCCEEEEEEccCCCE----EEEEeCCCcEEEEEcCCCce-eee
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDW---TDLHEMVTAACYTPDGQN----ALIGSHKGSCRLYSIEDSKL-HQL 673 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~---~~~~~~V~sv~fspdg~~----Lasgs~dg~I~IwDl~~~~~-~~~ 673 (969)
+.+ ..+++++.++.+++|++........ ......+.++++.++... +++++.||.|++||+..... ...
T Consensus 178 ~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~ 254 (368)
T 3mmy_A 178 VIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN 254 (368)
T ss_dssp EET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred ecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence 864 5888999999999999987643322 123356777777776654 99999999999999988742 111
Q ss_pred eeeeec------ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 674 NQVDFQ------TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 674 ~~~~~~------~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
..+... .....|...|++++|+|++ .+|++++.|+.|++||............|...|.+++|+|+|++|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp EEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred eeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEE
Confidence 111000 0011222379999999988 799999999999999988776666666778899999999999999999
Q ss_pred eCCCcEEEEEcCC
Q 002086 748 SEDSQVYVWKREE 760 (969)
Q Consensus 748 s~Dg~I~IWdl~t 760 (969)
+.|+..+.|++.+
T Consensus 334 s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 334 SSYDWSKGHEFYN 346 (368)
T ss_dssp ECCCSTTCGGGCC
T ss_pred ecccccccccccC
Confidence 9998777666554
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-26 Score=256.17 Aligned_cols=252 Identities=10% Similarity=0.109 Sum_probs=181.3
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
.+...+.+.++.+|.+.|++++|+|||++||+|+.|+ ++||++.+++.....
T Consensus 5 s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~--------------------------- 56 (355)
T 3vu4_A 5 SMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ--------------------------- 56 (355)
T ss_dssp --------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---------------------------
T ss_pred cccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---------------------------
Confidence 4444555667789999999999999999999998775 789998876554311
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcE-EEEEeCCCcEEEEECCCCcEEEEeecC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHL-LLSSSMDKTVRLWDMETKSCLKLFAHN 594 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~-L~Sgs~DgtV~IWDl~t~~~i~~~~h~ 594 (969)
+...+..+.+.+ ++. +++++.|++|+|||+.+++++..+.|.
T Consensus 57 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~ 100 (355)
T 3vu4_A 57 ------------------------------------EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVD 100 (355)
T ss_dssp ------------------------------------ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECS
T ss_pred ------------------------------------ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECC
Confidence 111355566665 444 467888999999999999999999999
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEecCCCCEEEEEEccCCCEEEE--EeCCCcEEEEEcCCCcee
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWTDLHEMVTAACYTPDGQNALI--GSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg~~Las--gs~dg~I~IwDl~~~~~~ 671 (969)
..|.+++|++ +.++++ .|+.|++||+.++ +.+..... ....+++++ .++++ |+.+|.|++||+.++...
T Consensus 101 ~~v~~v~~~~---~~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~ 172 (355)
T 3vu4_A 101 APVKDLFLSR---EFIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSA 172 (355)
T ss_dssp SCEEEEEECS---SEEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC----
T ss_pred CceEEEEEcC---CEEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcc
Confidence 9999999986 344444 4789999999887 44332222 455667777 56666 588999999999876511
Q ss_pred eeeee-------ee-cccccCCCCCeEEEEEcCCCCceEEEEeCCCc-EEEEeCCcceEEEEee-c-CCCCeEEEEEeCC
Q 002086 672 QLNQV-------DF-QTKKKSSTRKITGFQFSPSNPSEVLVTSADSR-IRILDGLDIVHKFRGF-R-NTSSQISAAFNAD 740 (969)
Q Consensus 672 ~~~~~-------~~-~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~-I~IwD~~~~~~~~~~~-~-~~~~V~sl~fspd 740 (969)
..... .. .....+|...|++++|+|++ .+|++++.|++ |+|||..+........ . |...|.+++|+|+
T Consensus 173 ~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~ 251 (355)
T 3vu4_A 173 TTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTD 251 (355)
T ss_dssp --------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTT
T ss_pred ccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCC
Confidence 00000 00 12237899999999999988 89999999998 9999987655544444 2 7788999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCC
Q 002086 741 GKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|++|++++.|++|+|||+..+
T Consensus 252 ~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 252 GSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp SCEEEEEETTCEEEEEESSCC
T ss_pred CCEEEEEECCCEEEEEEccCC
Confidence 999999999999999999875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=254.39 Aligned_cols=198 Identities=19% Similarity=0.198 Sum_probs=165.4
Q ss_pred cccccCEEEEEEeCCCCEEEEEe--CCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAG--EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs--~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
..+...+.+++|||||++||+++ .|++|+|||+.+++.+.
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~-------------------------------------- 171 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF-------------------------------------- 171 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE--------------------------------------
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE--------------------------------------
Confidence 45667799999999999887554 79999999999877654
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQ 601 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~ 601 (969)
.+ .|...|++|+|+| +++|++++. +.+++|+..+++.+... .|...|.+++
T Consensus 172 -----------------------~~-~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 172 -----------------------EI-ETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKIN 226 (365)
T ss_dssp -----------------------EE-ECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEE
T ss_pred -----------------------Ee-CCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEE
Confidence 22 3777899999999 788888875 55777777777766433 6888999999
Q ss_pred EecCCCCEEEEEECCC----eEEEEeCCCceE-----EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 602 FNPMDDDYFISGSLDA----KVRIWSISDRLV-----VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg----~I~IWDl~~~~~-----~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
|+| ++.++++++.|+ .+++|++..... ..+..+...|++++|+|+|++||+|+.|++|+|||+.+++...
T Consensus 227 fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~ 305 (365)
T 4h5i_A 227 FIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK 305 (365)
T ss_dssp EEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE
Confidence 999 999999999887 688999876543 3456778899999999999999999999999999999987643
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
.. ..+|...|++++|+|++ .+|++++.|++|+|||+.
T Consensus 306 ~~-------~~gH~~~V~~v~fSpdg-~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 306 IF-------KQAHSFAITEVTISPDS-TYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EE-------TTSSSSCEEEEEECTTS-CEEEEEETTSEEEEEECC
T ss_pred Ee-------cCcccCCEEEEEECCCC-CEEEEEeCCCeEEEEEcC
Confidence 21 26799999999999998 899999999999999964
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-26 Score=251.70 Aligned_cols=297 Identities=13% Similarity=0.130 Sum_probs=213.1
Q ss_pred hccCCCcceeeeeccccc-ccccCCCC---cccccccccccccccccccccccceeeeeEEEeeecCCc---cccCCCCc
Q 002086 333 KSVGHSPVVKELMRRENV-NRINDSAG---KFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDK---ECINPNPL 405 (969)
Q Consensus 333 ~~~GHs~~V~~l~~~~~~-~~~~t~s~---d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~---~~~~~~~l 405 (969)
...||...|.++++..+. ..+++++. |..+..|.....+...... ........++.|+++. ..++.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~l~~--- 85 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE----IEKAKPIKCGTFGATSLQQRYLAT--- 85 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE----EEESSCEEEEECTTCCTTTCCEEE---
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee----ecccCcEEEEEEcCCCCCCceEEE---
Confidence 346899999999976655 55566654 7777777543222211111 1223344555555552 22111
Q ss_pred ccchHHHHHHhhccccCcceEEEccCCCcccccccce-eeeEecccccCEEEEEE------eCCCCEEEEEeCCCcEEEE
Q 002086 406 LGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALH-LCQEIQAHEGSIWTIKF------SLDARFLASAGEDRVIHVW 478 (969)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~-l~~~L~gH~~~I~~l~f------SpDg~~LaTgs~DgtVrIW 478 (969)
...++.+. +|++...+ .+..+.+|.+.|.+++| +|++++|++|+.|+.|++|
T Consensus 86 ------------~~~dg~i~---------iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 86 ------------GDFGGNLH---------IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW 144 (357)
T ss_dssp ------------EETTSCEE---------EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred ------------ecCCCeEE---------EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence 11222222 33555555 67889999999999955 6799999999999999999
Q ss_pred ecccce-EEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccC----
Q 002086 479 EVQECE-VMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGH---- 553 (969)
Q Consensus 479 Dl~tg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH---- 553 (969)
|+.+++ .+. .+..|
T Consensus 145 d~~~~~~~~~-------------------------------------------------------------~~~~~~~~~ 163 (357)
T 3i2n_A 145 DPRQKDDPVA-------------------------------------------------------------NMEPVQGEN 163 (357)
T ss_dssp CTTSCSSCSE-------------------------------------------------------------EECCCTTSC
T ss_pred eCCCCCCcce-------------------------------------------------------------eccccCCCC
Confidence 998654 222 22222
Q ss_pred CCCEEEEE----ecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecC--CCCEEEEEECCCeEEEEeCCC
Q 002086 554 LDDVLDLS----WSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM--DDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 554 ~~~I~~l~----fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~--~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
...|.++. |++ +.+|++++.||.|++||+.++++.....|...|.+++|+|. ++.+|++++.||.|++||+++
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 34788888 666 78999999999999999999999888899999999999985 578999999999999999987
Q ss_pred ceEE------EEecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeee-----------eeeecccccCCCCC
Q 002086 627 RLVV------DWTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKLHQLN-----------QVDFQTKKKSSTRK 688 (969)
Q Consensus 627 ~~~~------~~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~~~~~-----------~~~~~~~~~~h~~~ 688 (969)
+... ....|...|++++|+|++. +|++++.||.|++||+......... ..........|...
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (357)
T 3i2n_A 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP 323 (357)
T ss_dssp EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence 6432 2337889999999999998 8999999999999999865432100 00112233678899
Q ss_pred eEEEEEcCCCCceEE-EEeCCCcEEEEeCCcc
Q 002086 689 ITGFQFSPSNPSEVL-VTSADSRIRILDGLDI 719 (969)
Q Consensus 689 It~l~fspd~~~~l~-sgs~Dg~I~IwD~~~~ 719 (969)
|++++|+|++ .+|+ +++.|+.|++||+.+.
T Consensus 324 v~~~~~s~~~-~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 324 ISSLDWSPDK-RGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEEECSSS-TTEEEEEETTSEEEEEEECC-
T ss_pred eeEEEEcCCC-CeEEEEecCCCcEEEEECCCc
Confidence 9999999998 5555 8999999999996543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=264.35 Aligned_cols=256 Identities=14% Similarity=0.166 Sum_probs=177.9
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
..+|.+.+....+.+++.+||+|+.|++|+|||+.+++.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~------------------------------------- 127 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH------------------------------------- 127 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEE-------------------------------------
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceee-------------------------------------
Confidence 4467777777788889999999999999999999887654311
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC---------CcEEEEEeCCCcEEEEECCCCcEE-EEeecCCC
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR---------SHLLLSSSMDKTVRLWDMETKSCL-KLFAHNDY 596 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~---------~~~L~Sgs~DgtV~IWDl~t~~~i-~~~~h~~~ 596 (969)
++..+.||.+.|++|+|+| +++|++|+.|++|+|||+.++.++ ..+.|...
T Consensus 128 -------------------~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 128 -------------------VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP 188 (393)
T ss_dssp -------------------EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC
T ss_pred -------------------eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC
Confidence 1124678999999999985 479999999999999999877655 55699999
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE--------------------------EecCCCCEEEEEEc-cCCC
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD--------------------------WTDLHEMVTAACYT-PDGQ 649 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~--------------------------~~~~~~~V~sv~fs-pdg~ 649 (969)
|.+++|+|.+..+|++++.|++|++||+++++... ...+...+.++.|+ ++++
T Consensus 189 v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~ 268 (393)
T 4gq1_A 189 GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS 268 (393)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC
T ss_pred cEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC
Confidence 99999999334689999999999999998764321 12455678888887 7999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeee----------ecccccCCCCCeEEEEEcC-CCCceEEEEeCCCcEEEEeCCc
Q 002086 650 NALIGSHKGSCRLYSIEDSKLHQLNQVD----------FQTKKKSSTRKITGFQFSP-SNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 650 ~Lasgs~dg~I~IwDl~~~~~~~~~~~~----------~~~~~~~h~~~It~l~fsp-d~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
.|++++.|+++++||+..++........ ................|+| .+..++++|+.|+.|+|||...
T Consensus 269 ~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~ 348 (393)
T 4gq1_A 269 GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE 348 (393)
T ss_dssp EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC
T ss_pred EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC
Confidence 9999999999999999876543221100 0000011112222334444 3434566778899999999776
Q ss_pred ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 719 IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 719 ~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.........+...|.+++|+|||++||+++.|| |.+|++.
T Consensus 349 ~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 349 KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 555455556677899999999999999998665 7777664
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-25 Score=240.52 Aligned_cols=282 Identities=19% Similarity=0.277 Sum_probs=215.0
Q ss_pred hhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchH
Q 002086 331 FEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQR 410 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~ 410 (969)
+..+.||...|.++++ .+...+++++.|..+..|.... ......+....+...++.|+++...+...
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------- 77 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD-----QWLGTVVYTGQGFLNSVCYDSEKELLLFG------- 77 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS-----SEEEEEEEECSSCEEEEEEETTTTEEEEE-------
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC-----CEEEEEeecCCccEEEEEECCCCCEEEEe-------
Confidence 4667899999999999 6666688888888887776432 22222333334555566666655442221
Q ss_pred HHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 411 EQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 411 ~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
..++.+.++. +++....+.+..+.+|...|++++| ++++|++++.|+.|++|| .++.+
T Consensus 78 --------~~dg~i~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~---- 135 (313)
T 3odt_A 78 --------GKDTMINGVP------LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLV---- 135 (313)
T ss_dssp --------ETTSCEEEEE------TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEE----
T ss_pred --------cCCCeEEEEE------eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEE----
Confidence 1222222221 2233444667788999999999999 578999999999999999 33322
Q ss_pred CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEE
Q 002086 491 GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLL 568 (969)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L 568 (969)
..+..|...|.++.|.+ +++|
T Consensus 136 ---------------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 136 ---------------------------------------------------------YNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp ---------------------------------------------------------EEEECCSSCEEEEEEEETTTTEE
T ss_pred ---------------------------------------------------------EecccCCCceeEEEEccCCCCEE
Confidence 25667999999999986 7899
Q ss_pred EEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEc
Q 002086 569 LSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYT 645 (969)
Q Consensus 569 ~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fs 645 (969)
++++.|+.|++|| .++....+ .|...|.+++|+| ++. |++++.||.|++||+++++.+. +..|...|++++|+
T Consensus 159 ~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe
Confidence 9999999999999 44555555 3999999999999 665 9999999999999999887665 45588899999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc
Q 002086 646 PDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI 719 (969)
Q Consensus 646 pdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~ 719 (969)
|++ .|++++.||.|++||+.+++..... ..|...|.+++|+|++ . +++++.|+.|++||....
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~--------~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVI--------TLPAISIWSVDCMSNG-D-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEE--------ECSSSCEEEEEECTTS-C-EEEEETTSCEEEEESCGG
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEE--------eccCceEEEEEEccCC-C-EEEEeCCCcEEEEeCCCC
Confidence 999 6899999999999999998765443 4567799999999998 3 778999999999997653
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-25 Score=253.02 Aligned_cols=243 Identities=13% Similarity=0.221 Sum_probs=196.1
Q ss_pred CEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 453 SIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 453 ~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
....++++|+.. ++++++.||.|+||++.......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-------------------------------------------- 71 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-------------------------------------------- 71 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC--------------------------------------------
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC--------------------------------------------
Confidence 445688998775 44568899999999986432210
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCC-------cEEEEe-ecCCCeEEEE
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETK-------SCLKLF-AHNDYVTCIQ 601 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~-------~~i~~~-~h~~~V~sv~ 601 (969)
+.+..+.+|.+.|++++|+| +.+|++|+.||+|+|||+.++ +++..+ +|...|.+++
T Consensus 72 -------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 138 (402)
T 2aq5_A 72 -------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138 (402)
T ss_dssp -------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEE
T ss_pred -------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEE
Confidence 11224678999999999998 689999999999999999987 445444 7999999999
Q ss_pred EecCCC-CEEEEEECCCeEEEEeCCCceEEEEe---cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 602 FNPMDD-DYFISGSLDAKVRIWSISDRLVVDWT---DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 602 fsp~~~-~~L~sgs~Dg~I~IWDl~~~~~~~~~---~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
|+| ++ ++|++++.||.|++||+.+++.+... .|...|.+++|+|++.+|++++.||.|++||+++++......
T Consensus 139 ~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-- 215 (402)
T 2aq5_A 139 WHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD-- 215 (402)
T ss_dssp ECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--
T ss_pred ECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec--
Confidence 999 65 79999999999999999998877654 578899999999999999999999999999999887643321
Q ss_pred ecccccCCCC-CeEEEEEcCCCCceEEEE---eCCCcEEEEeCCcceE--EEEeecCCCCeEEEEEeCCCCEEEE-EeCC
Q 002086 678 FQTKKKSSTR-KITGFQFSPSNPSEVLVT---SADSRIRILDGLDIVH--KFRGFRNTSSQISAAFNADGKYIIS-ASED 750 (969)
Q Consensus 678 ~~~~~~~h~~-~It~l~fspd~~~~l~sg---s~Dg~I~IwD~~~~~~--~~~~~~~~~~V~sl~fspdg~~LaS-gs~D 750 (969)
..|.. .+.++.|+|++ .+|+++ +.|+.|++||...... ......+...+.+++|+|++++|++ |+.|
T Consensus 216 -----~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 216 -----RPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp -----CSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred -----cCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 24444 48999999987 788888 7999999999765332 2233346677999999999999975 5579
Q ss_pred CcEEEEEcCCC
Q 002086 751 SQVYVWKREEH 761 (969)
Q Consensus 751 g~I~IWdl~t~ 761 (969)
|.|++|++.++
T Consensus 290 g~i~i~d~~~~ 300 (402)
T 2aq5_A 290 SSIRYFEITSE 300 (402)
T ss_dssp SCEEEEEECSS
T ss_pred CeEEEEEecCC
Confidence 99999999874
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-24 Score=241.38 Aligned_cols=253 Identities=12% Similarity=0.131 Sum_probs=205.5
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
++++.+.+++..+.+|.. +.+++|+|+|++| ++++.|++|++||+.+++.+..
T Consensus 16 v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~------------------------- 69 (391)
T 1l0q_A 16 VIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT------------------------- 69 (391)
T ss_dssp EEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------------
T ss_pred EEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-------------------------
Confidence 346677788888887754 8999999999976 6777999999999998876552
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE-EEeCCCcEEEEECCCCcEEEEe
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL-SSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~-Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
+..| ..+.+++|+| +++|+ +++.++.|++||+.+++.+..+
T Consensus 70 ------------------------------------~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~ 112 (391)
T 1l0q_A 70 ------------------------------------VPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112 (391)
T ss_dssp ------------------------------------EECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ------------------------------------EECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE
Confidence 2223 3899999999 66664 5557799999999999999988
Q ss_pred ecCCCeEEEEEecCCCCEE-EEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCc
Q 002086 592 AHNDYVTCIQFNPMDDDYF-ISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNA-LIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L-~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~L-asgs~dg~I~IwDl~~~~ 669 (969)
.+...+.+++|+| ++.+| ++++.|+.|++||+.+++.+........+.+++|+|++++| ++++.++.|++||+.+++
T Consensus 113 ~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 113 KTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred eCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 8888999999999 88866 78888999999999999988887777889999999999988 567788999999999887
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe---CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEE-E
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS---ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYI-I 745 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs---~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~L-a 745 (969)
..... .+...+.+++|+|++ .++++++ .++.|++||........... ....+.+++|+|+|++| +
T Consensus 192 ~~~~~---------~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~ 260 (391)
T 1l0q_A 192 VIDTV---------KVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYV 260 (391)
T ss_dssp EEEEE---------ECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEE
T ss_pred EEEEE---------ecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeEEEEEe-cCCCccEEEEccCCCEEEE
Confidence 65332 234578999999998 5666666 78999999987654433332 23457899999999987 6
Q ss_pred EEeCCCcEEEEEcCCCC
Q 002086 746 SASEDSQVYVWKREEHR 762 (969)
Q Consensus 746 Sgs~Dg~I~IWdl~t~~ 762 (969)
+++.|+.|++||+.+++
T Consensus 261 s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 261 ALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EETTTTEEEEEETTTTE
T ss_pred EcCCCCEEEEEECCCCc
Confidence 77889999999999843
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-25 Score=248.61 Aligned_cols=254 Identities=15% Similarity=0.181 Sum_probs=198.7
Q ss_pred ceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC--CCcEEEEe-ecCCCeEEEEEecCC--CCEEEEEECCCeE
Q 002086 546 PFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME--TKSCLKLF-AHNDYVTCIQFNPMD--DDYFISGSLDAKV 619 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~--t~~~i~~~-~h~~~V~sv~fsp~~--~~~L~sgs~Dg~I 619 (969)
.+..+.+|.+.|++++|++ +.+|++|+.||.|+|||+. +++.+..+ +|...|++++|++ + +.+|++++.||.|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKV 81 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEE
Confidence 3457889999999999999 8899999999999999998 45555555 7999999999987 5 8999999999999
Q ss_pred EEEeCCCce---EEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE
Q 002086 620 RIWSISDRL---VVDWTDLHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF 694 (969)
Q Consensus 620 ~IWDl~~~~---~~~~~~~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f 694 (969)
++||+.++. ......|...|.+++|+|+ +.+|++++.||.|++||+.......... ...|...|.+++|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~~~~v~~~~~ 155 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------IDAHAIGVNSASW 155 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE------EECCTTCEEEEEE
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE------ecCCCCceEEEEE
Confidence 999999885 4455567889999999999 9999999999999999999875432222 2568899999999
Q ss_pred cCC------------CCceEEEEeCCCcEEEEeCCcc----eEEEEeecCCCCeEEEEEeCC---CCEEEEEeCCCcEEE
Q 002086 695 SPS------------NPSEVLVTSADSRIRILDGLDI----VHKFRGFRNTSSQISAAFNAD---GKYIISASEDSQVYV 755 (969)
Q Consensus 695 spd------------~~~~l~sgs~Dg~I~IwD~~~~----~~~~~~~~~~~~V~sl~fspd---g~~LaSgs~Dg~I~I 755 (969)
+|. ++.++++++.|+.|++||.... ........|...|.+++|+|+ +.+|++++.||.|+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 156 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp CCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence 994 3489999999999999996532 222334457788999999999 899999999999999
Q ss_pred EEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCC
Q 002086 756 WKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSR 835 (969)
Q Consensus 756 Wdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~ 835 (969)
||+.++.... ......... .........++|++.++++++.+
T Consensus 236 wd~~~~~~~~----~~~~~~~~~----------------------------------~~~~v~~~~~s~~g~~l~~~~~d 277 (379)
T 3jrp_A 236 WTQDNEQGPW----KKTLLKEEK----------------------------------FPDVLWRASWSLSGNVLALSGGD 277 (379)
T ss_dssp EEESSTTSCC----EEEESSSSC----------------------------------CSSCEEEEEECSSSCCEEEEESS
T ss_pred EeCCCCCccc----eeeeecccc----------------------------------CCCcEEEEEEcCCCCEEEEecCC
Confidence 9998742110 000100000 01112234578888888888888
Q ss_pred CccccCCCC
Q 002086 836 RLLPPLPKK 844 (969)
Q Consensus 836 ~~L~~~~~~ 844 (969)
+.+..|...
T Consensus 278 g~i~iw~~~ 286 (379)
T 3jrp_A 278 NKVTLWKEN 286 (379)
T ss_dssp SSEEEEEEE
T ss_pred CcEEEEeCC
Confidence 888888654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-24 Score=251.73 Aligned_cols=290 Identities=12% Similarity=0.056 Sum_probs=201.4
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce---EEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE---VMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~---~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
..+|.+++|++||++|+++ .++.|++||+.+|+ .+..+..+.............. ............+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKE----QQGQSSENENENKKLKS 78 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchh----hcccccccccccccccc
Confidence 4578999999999977766 47899999999998 6655443321100000000000 00000000000000000
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECC--CCcEEEEe---ecCCCeEEE
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDME--TKSCLKLF---AHNDYVTCI 600 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~--t~~~i~~~---~h~~~V~sv 600 (969)
..... ...... ....+.....+|.+.|.+++|+| +.+| ++|+.||+|+|||+. +++++..+ .|...|.++
T Consensus 79 ~~~~~--~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 155 (450)
T 2vdu_B 79 NKGDS--IKRTAA-KVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAI 155 (450)
T ss_dssp ------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEE
T ss_pred CcCcc--ccccCc-cccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEE
Confidence 00000 000000 00111224457888999999999 7775 899999999999999 88888776 678999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCceEE-----EEecCCCCEEEEEEccC---CCEEEEEeCCCcEEEEEcCCCceee
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDRLVV-----DWTDLHEMVTAACYTPD---GQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-----~~~~~~~~V~sv~fspd---g~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
+|+| ++.+|++|+.||.|++|++.++... .+..|...|++++|+|+ +++|++|+.|+.|++||+.+++...
T Consensus 156 ~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 156 SIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp EECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 9999 9999999999999999999876543 45567889999999999 9999999999999999999877543
Q ss_pred eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE--EEEee-----------------------c
Q 002086 673 LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH--KFRGF-----------------------R 727 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~--~~~~~-----------------------~ 727 (969)
.. ..+|...|.+++|+ ++ .+|++++.|+.|++||...... .+... .
T Consensus 235 ~~-------~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
T 2vdu_B 235 KW-------LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI 305 (450)
T ss_dssp EE-------CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred ee-------ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence 21 25788999999999 66 8999999999999999765433 33221 2
Q ss_pred CCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEc
Q 002086 728 NTSSQISAAFNADGKYIISAS-EDSQVYVWKR 758 (969)
Q Consensus 728 ~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl 758 (969)
....|.+++|+|++++|++++ .|+.|+||++
T Consensus 306 ~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 306 IEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp BCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 235688999999999999999 8999999999
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-26 Score=250.38 Aligned_cols=207 Identities=18% Similarity=0.261 Sum_probs=167.2
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE--EEEe-ecCCCeEEEEEec-CCCCEEEEEECCCeEEEEe
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC--LKLF-AHNDYVTCIQFNP-MDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~--i~~~-~h~~~V~sv~fsp-~~~~~L~sgs~Dg~I~IWD 623 (969)
.+.+|.+.|++++|++ +++|++|+.|++|+|||+.++.. +..+ +|...|++++|++ .++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4678999999999999 89999999999999999988753 4444 8999999999975 2478999999999999999
Q ss_pred CCCce---EEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 624 ISDRL---VVDWTDLHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 624 l~~~~---~~~~~~~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
++++. ...+..|...|.+++|+|+ +.+|++|+.|+.|++||+....... .......|...|.+++|+|+.
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE-----VKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE-----ECCBTTSSSSCBCCCEECCCC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc-----eeeeeccccCCcceEEEcccc
Confidence 98863 3455678889999999998 7899999999999999998753211 112236788899999999973
Q ss_pred ----------------CceEEEEeCCCcEEEEeCCcc---eEEEEeecCCCCeEEEEEeCCC----CEEEEEeCCCcEEE
Q 002086 699 ----------------PSEVLVTSADSRIRILDGLDI---VHKFRGFRNTSSQISAAFNADG----KYIISASEDSQVYV 755 (969)
Q Consensus 699 ----------------~~~l~sgs~Dg~I~IwD~~~~---~~~~~~~~~~~~V~sl~fspdg----~~LaSgs~Dg~I~I 755 (969)
..+|++++.|+.|++||.... ........|...|.+++|+|++ .+|++|+.|++|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 258999999999999997532 2333345577889999999986 89999999999999
Q ss_pred EEcCC
Q 002086 756 WKREE 760 (969)
Q Consensus 756 Wdl~t 760 (969)
|++.+
T Consensus 243 w~~~~ 247 (316)
T 3bg1_A 243 WTCDD 247 (316)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99976
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=238.09 Aligned_cols=293 Identities=13% Similarity=0.144 Sum_probs=205.6
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc----EEEEe-ecCCCeEEEEEecC-CCCEEEEEECCCeEEE
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS----CLKLF-AHNDYVTCIQFNPM-DDDYFISGSLDAKVRI 621 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~----~i~~~-~h~~~V~sv~fsp~-~~~~L~sgs~Dg~I~I 621 (969)
.+.+|.+.|++++|+| +.+|++|+.||.|++||+.++. .+..+ +|...|++++|+|. ++.+|++++.||.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 5789999999999999 8899999999999999999763 44444 79999999999984 3899999999999999
Q ss_pred EeCCCc---------e-EEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeee-----ecccccC
Q 002086 622 WSISDR---------L-VVDWTDLHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVD-----FQTKKKS 684 (969)
Q Consensus 622 WDl~~~---------~-~~~~~~~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~-----~~~~~~~ 684 (969)
||+..+ + +..+..|...|.+++|+|+ +.+|++++.||.|++||+++.+........ .......
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence 999875 2 4556678899999999999 999999999999999999987754332211 1112246
Q ss_pred CCCCeEEEEEcCC--CCceEEEEeCCCcEEEEeCCcce--EEEEeecCCCCeEEEEEeCCC----CEEEEEeCCCcEEEE
Q 002086 685 STRKITGFQFSPS--NPSEVLVTSADSRIRILDGLDIV--HKFRGFRNTSSQISAAFNADG----KYIISASEDSQVYVW 756 (969)
Q Consensus 685 h~~~It~l~fspd--~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~~~~~~V~sl~fspdg----~~LaSgs~Dg~I~IW 756 (969)
+...+.++.|+|+ ++..+++++.++.+.+|+..... .......|...|.+++|+|++ .+|++|+.||.|++|
T Consensus 166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw 245 (351)
T 3f3f_A 166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF 245 (351)
T ss_dssp CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence 7889999999997 34899999999999888855433 244445678889999999998 899999999999999
Q ss_pred EcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCc--ccC-CCCCccE------EEcccccccCCCCcccccCCCCC
Q 002086 757 KREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGM--VKG-EPPPTPV------QTKKHAKRISSNPTSATSSPTKE 827 (969)
Q Consensus 757 dl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~--i~G-~~~~~~v------~~~~~~~~~~~~~~~~~~SP~~~ 827 (969)
|+.++........ ................... ..+ ......+ .................++|++.
T Consensus 246 d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 319 (351)
T 3f3f_A 246 KITEKLSPLASEE------SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGT 319 (351)
T ss_dssp EEEECC---------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSC
T ss_pred eCCCCcCccccCC------cccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCC
Confidence 9987533221110 0000000000000000000 000 0000000 00000111223345677899999
Q ss_pred CccccCCCCccccCCCCCCc
Q 002086 828 GSPAGHSRRLLPPLPKKTNK 847 (969)
Q Consensus 828 ~i~~~~~~~~L~~~~~~s~~ 847 (969)
++++++.++.+..|....+.
T Consensus 320 ~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 320 ILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp CEEEEETTSCEEEEEECTTS
T ss_pred EEEEecCCCcEEEEecCcCc
Confidence 99999999999999876553
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-25 Score=256.76 Aligned_cols=264 Identities=12% Similarity=0.087 Sum_probs=201.8
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.-...|.+++|+|||+++||++.|++|+ |...++. +.++...+..+.+.+.. ....+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~-------- 72 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFE-------- 72 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTS--------
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEE--------
Confidence 4568899999999999999999999999 7555443 35666666666555433 11111111
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCC-----CeEEEEE
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHND-----YVTCIQF 602 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~-----~V~sv~f 602 (969)
...+..+..+ .|...|.+++|+| +.+|++++.||+|+|||..+ ++..+.|.. .|.+++|
T Consensus 73 ------------~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svaf 137 (588)
T 2j04_A 73 ------------LAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEW 137 (588)
T ss_dssp ------------CCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEE
T ss_pred ------------eCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEE
Confidence 0111111111 4688999999999 89999999999999999655 666666554 4999999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceE--------EEE----ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLV--------VDW----TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~--------~~~----~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
+| ++++|++|+.||+|+|||+.++.+ ..+ .+|...|.+++|+|+| +++++.|++|++||+.++..
T Consensus 138 SP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 138 NP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp CS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred cC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence 99 999999999999999999998752 333 4566799999999999 88899999999999988763
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEE--eCCCCEEEEEe
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAF--NADGKYIISAS 748 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~f--spdg~~LaSgs 748 (969)
..... .....|...|.+++|+ + ..+++++ +++|++||............|...+..+.| +||+..|++++
T Consensus 215 ~~~~~----tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 215 QPVSR----MIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp CCCEE----EEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred cccee----eecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence 21000 0013577899999999 4 6888887 699999998876663333368888999999 99999999999
Q ss_pred CCCcEEEEEcC
Q 002086 749 EDSQVYVWKRE 759 (969)
Q Consensus 749 ~Dg~I~IWdl~ 759 (969)
+||+ ++|.++
T Consensus 287 edG~-klw~~d 296 (588)
T 2j04_A 287 KTSY-KVLLED 296 (588)
T ss_dssp SCEE-EEEESS
T ss_pred CCCC-EEEeec
Confidence 9999 999987
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=249.86 Aligned_cols=230 Identities=13% Similarity=0.131 Sum_probs=178.0
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCccccc
Q 002086 457 IKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVP 536 (969)
Q Consensus 457 l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 536 (969)
..+.+++.+|++|+.||+|+|||+.+++.+..+.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---------------------------------------------- 75 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---------------------------------------------- 75 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----------------------------------------------
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----------------------------------------------
Confidence 3445688899999999999999999877655321
Q ss_pred ceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECC---------CCcEEEEe--ecCCCeEEEEEec-
Q 002086 537 ETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDME---------TKSCLKLF--AHNDYVTCIQFNP- 604 (969)
Q Consensus 537 ~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~---------t~~~i~~~--~h~~~V~sv~fsp- 604 (969)
...|.++.|+|. +++++.|++|++|+.. +++.+..+ +|...|.+++|+|
T Consensus 76 -----------------~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 136 (343)
T 3lrv_A 76 -----------------TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNE 136 (343)
T ss_dssp -----------------EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC-
T ss_pred -----------------cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCC
Confidence 233445566665 8999999999999655 56655544 6778999999998
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-eeeeeeeccc
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH-QLNQVDFQTK 681 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~-~~~~~~~~~~ 681 (969)
.++.+|++++.||+|++||+++++..... .+...+.+++|+|++.+|++|+.||.|++||+++++.. ...
T Consensus 137 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~------- 209 (343)
T 3lrv_A 137 VNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF------- 209 (343)
T ss_dssp --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC-------
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE-------
Confidence 25789999999999999999998876654 34457999999999999999999999999999988754 211
Q ss_pred ccC-CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE--EEee-cCCCCe--EEEEEeCCCCEEEEEeC-CCcEE
Q 002086 682 KKS-STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK--FRGF-RNTSSQ--ISAAFNADGKYIISASE-DSQVY 754 (969)
Q Consensus 682 ~~~-h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~--~~~~-~~~~~V--~sl~fspdg~~LaSgs~-Dg~I~ 754 (969)
.. |...|++++|+|++ .+|++++ ++.|++||+...... +..+ .+...+ .+++|+|+|++|++++. |+.|+
T Consensus 210 -~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~ 286 (343)
T 3lrv_A 210 -PVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT 286 (343)
T ss_dssp -CCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE
T ss_pred -eccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEE
Confidence 33 88999999999988 7888888 559999997654322 1110 011122 46999999999999998 99999
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
||++.+.
T Consensus 287 v~~~~~~ 293 (343)
T 3lrv_A 287 IYKFDKK 293 (343)
T ss_dssp EEEECTT
T ss_pred EEEEccc
Confidence 9999764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=252.89 Aligned_cols=288 Identities=11% Similarity=0.078 Sum_probs=208.2
Q ss_pred CcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhh
Q 002086 338 SPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQ 417 (969)
Q Consensus 338 s~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~ 417 (969)
...|.+|++..++..+++++.|.++. .++.. ..++.+....+.+.|+|+...
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~--------~~l~gh~~~v~~V~FsPdg~~------------------ 66 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYA--------KDINCNSKNLFHVKEFPLEFE------------------ 66 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCC--------SCCSSBGGGTEEEEEECCCCC------------------
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--ccccc--------ceecCCCccEEEEEECCCCCc------------------
Confidence 46699999999999999999999886 22211 122233333344444444411
Q ss_pred ccccCcceEEEccCCCcccccccceeeeEec-ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCc
Q 002086 418 NKNVSNHWVKVRQSGKSYKDLSALHLCQEIQ-AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496 (969)
Q Consensus 418 ~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~-gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v 496 (969)
+ .+++...+....+. +|...|++++|||||++||+++.||+|+|||.+. ++.
T Consensus 67 --~--------------~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~--------- 119 (588)
T 2j04_A 67 --N--------------KLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLT--------- 119 (588)
T ss_dssp --C--------------TTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEE---------
T ss_pred --c--------------eEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eee---------
Confidence 1 11222111111222 5689999999999999999999999999999653 222
Q ss_pred ccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCC-----CCEEEEEecC-CcEEEE
Q 002086 497 HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHL-----DDVLDLSWSR-SHLLLS 570 (969)
Q Consensus 497 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~-----~~I~~l~fs~-~~~L~S 570 (969)
.+. |. ..|.+++|+| +++|++
T Consensus 120 ----------------------------------------------------~l~-~~~~~~~~sv~svafSPDG~~LAs 146 (588)
T 2j04_A 120 ----------------------------------------------------NLD-SKGNLSSRTYHCFEWNPIESSIVV 146 (588)
T ss_dssp ----------------------------------------------------ECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred ----------------------------------------------------ecc-CCCccccccEEEEEEcCCCCEEEE
Confidence 222 33 3589999999 899999
Q ss_pred EeCCCcEEEEECCCCc-------EEEEe-----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE----EEe-
Q 002086 571 SSMDKTVRLWDMETKS-------CLKLF-----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV----DWT- 633 (969)
Q Consensus 571 gs~DgtV~IWDl~t~~-------~i~~~-----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~----~~~- 633 (969)
|+.||+|+|||+.++. .+.++ +|...|.+++|+| ++ +++++.|++|++||+.++... .+.
T Consensus 147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence 9999999999999885 34553 5778999999999 77 889999999999999887732 232
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE--cCCCCceEEEEeCCCcE
Q 002086 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF--SPSNPSEVLVTSADSRI 711 (969)
Q Consensus 634 ~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f--spd~~~~l~sgs~Dg~I 711 (969)
.|...|.+++|+ |+.||+++ +++|++||+.+++..... .+|...|..++| +|++ ..+++++.||+
T Consensus 224 ~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~--------~gh~~~V~~va~~~s~d~-~~La~a~edG~- 290 (588)
T 2j04_A 224 ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK--------TGSLENFHIIPLNHEKES-TILLMSNKTSY- 290 (588)
T ss_dssp CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE--------CSCCSCCCEEEETTCSSC-EEEEECSSCEE-
T ss_pred cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE--------cCCCceEEEEEeeeCCCC-CEEEEEcCCCC-
Confidence 566889999999 68999887 699999999988763221 369999999999 9988 78999999999
Q ss_pred EEEeCCcceEE----------------------EEeecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 712 RILDGLDIVHK----------------------FRGFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 712 ~IwD~~~~~~~----------------------~~~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
++|........ +....+...|.+++|+|||+.+|+++.
T Consensus 291 klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 291 KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 99975311100 001111223778888888888888764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-24 Score=247.37 Aligned_cols=251 Identities=14% Similarity=0.079 Sum_probs=194.8
Q ss_pred ecccccCEEEEEEeCCCCEE-EEEeCCCcEEEEecc--cceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 447 IQAHEGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQ--ECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~--tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+.+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~---------------------------------- 143 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR---------------------------------- 143 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE----------------------------------
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee----------------------------------
Confidence 34677899999999999996 899999999999998 55444321
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEE----E-eecCCCe
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLK----L-FAHNDYV 597 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~----~-~~h~~~V 597 (969)
....|...|.+++|+| +.+|++|+.||.|++|++.++.... . .+|...|
T Consensus 144 -------------------------~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v 198 (450)
T 2vdu_B 144 -------------------------KRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSML 198 (450)
T ss_dssp -------------------------EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCE
T ss_pred -------------------------ecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCce
Confidence 1125778999999999 8899999999999999998877553 3 3799999
Q ss_pred EEEEEecCC---CCEEEEEECCCeEEEEeCCCceEEEE--ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 598 TCIQFNPMD---DDYFISGSLDAKVRIWSISDRLVVDW--TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 598 ~sv~fsp~~---~~~L~sgs~Dg~I~IWDl~~~~~~~~--~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
++++|+| + +.+|++|+.|+.|++||+.++..+.. ..|...|.+++|+ ++++|++++.|+.|++||+.+++...
T Consensus 199 ~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 199 TDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLS 276 (450)
T ss_dssp EEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEE
T ss_pred EEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEee
Confidence 9999999 7 88999999999999999998876543 3688999999999 99999999999999999999988765
Q ss_pred eeeeeec-----------------ccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeC--Ccc---eEEEEeecCC
Q 002086 673 LNQVDFQ-----------------TKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDG--LDI---VHKFRGFRNT 729 (969)
Q Consensus 673 ~~~~~~~-----------------~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~--~~~---~~~~~~~~~~ 729 (969)
....... .........|.+++|+|++ .+|++++ .++.|+||++ ... ........ .
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-~ 354 (450)
T 2vdu_B 277 TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITF-P 354 (450)
T ss_dssp EEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC-S
T ss_pred eecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEecc-C
Confidence 4432100 0001334679999999988 6777777 8999999998 322 22222222 3
Q ss_pred CCeEEEEEeCCCCEEEEEeC------CCcEEEEEcCC
Q 002086 730 SSQISAAFNADGKYIISASE------DSQVYVWKREE 760 (969)
Q Consensus 730 ~~V~sl~fspdg~~LaSgs~------Dg~I~IWdl~t 760 (969)
..+.+++|+|++.++++++. +..|.||.+..
T Consensus 355 ~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 355 YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 78999999996544444443 55689998764
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=240.58 Aligned_cols=242 Identities=12% Similarity=0.136 Sum_probs=201.8
Q ss_pred EecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 446 ~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.+.+|.+.|++++|+++++++++++.|+.|++||+.+++.+.
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~-------------------------------------- 205 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA-------------------------------------- 205 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE--------------------------------------
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE--------------------------------------
Confidence 567899999999999999999999999999999998766544
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEe
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFN 603 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fs 603 (969)
.+..|...+.+++|++ +.++ ++++.|+.|++||+.+++.+..+.+...+.+++|+
T Consensus 206 -----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 262 (433)
T 3bws_A 206 -----------------------TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLS 262 (433)
T ss_dssp -----------------------EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEEC
T ss_pred -----------------------EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEc
Confidence 4456888999999999 6666 55558999999999999999888777889999999
Q ss_pred cCCCCEEEEEE--------CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeee
Q 002086 604 PMDDDYFISGS--------LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNA-LIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 604 p~~~~~L~sgs--------~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~L-asgs~dg~I~IwDl~~~~~~~~~ 674 (969)
| ++.+|++++ .|+.|++||+.+++++....+...+.+++|+|+++.+ ++++.++.|++||+.+++.....
T Consensus 263 ~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~ 341 (433)
T 3bws_A 263 K-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI 341 (433)
T ss_dssp T-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred C-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe
Confidence 9 888998888 5889999999999988887777789999999999765 56689999999999987765332
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeC---------------CCcEEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA---------------DSRIRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~---------------Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
.+...+.+++|+|++ .++++++. ||.|++||.......... .....+.+++|+|
T Consensus 342 ---------~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~-~~~~~~~~~~~s~ 410 (433)
T 3bws_A 342 ---------PVFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW-EAGNQPTGLDVSP 410 (433)
T ss_dssp ---------ECSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE-ECSSSEEEEEECT
T ss_pred ---------cCCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe-cCCCCCceEEEcC
Confidence 245678999999998 56666665 579999997665433332 2355789999999
Q ss_pred CCCEEEEEeC-CCcEEEEEcCC
Q 002086 740 DGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 740 dg~~LaSgs~-Dg~I~IWdl~t 760 (969)
+|++|++++. |+.|++|+++.
T Consensus 411 dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCEEEEEETTTTEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEecC
Confidence 9999998875 99999999864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-24 Score=243.29 Aligned_cols=252 Identities=15% Similarity=0.200 Sum_probs=205.9
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.+..+..|. .+.+++|+|++.++++++.|+.|++||+.+++.+.....
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------------------------------ 162 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP------------------------------ 162 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC------------------------------
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc------------------------------
Confidence 4555666554 456999999888889999999999999998876642110
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~s 599 (969)
..+.+|...|.+++|++ +.++++++.|+.|++||+.+++.+..+ .|...+.+
T Consensus 163 --------------------------~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~ 216 (433)
T 3bws_A 163 --------------------------EKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKI 216 (433)
T ss_dssp --------------------------HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEE
T ss_pred --------------------------ccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeE
Confidence 13457889999999988 789999999999999999999988877 68889999
Q ss_pred EEEecCCCCEEE-EEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEe--------CCCcEEEEEcCCCce
Q 002086 600 IQFNPMDDDYFI-SGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS--------HKGSCRLYSIEDSKL 670 (969)
Q Consensus 600 v~fsp~~~~~L~-sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs--------~dg~I~IwDl~~~~~ 670 (969)
++|+| ++.+++ +++.|+.|++||+.+++.+........+.+++|+|++++|++++ .||.|++||+.+++.
T Consensus 217 ~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~ 295 (433)
T 3bws_A 217 LLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL 295 (433)
T ss_dssp EEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE
T ss_pred EEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE
Confidence 99999 787775 55589999999999999888887778899999999999999888 488999999998876
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC-
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE- 749 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~- 749 (969)
.... .+...+.+++|+|++..++++++.++.|++||......... ..+...+.+++|+|+|++|++++.
T Consensus 296 ~~~~---------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 296 IDTI---------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS-IPVFDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp EEEE---------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE-EECSSSEEEEEECTTSSEEEEEECC
T ss_pred Eeec---------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE-ecCCCCCCeEEEcCCCCEEEEEecC
Confidence 4432 22346889999999866677779999999999875443332 335667899999999999998887
Q ss_pred --------------CCcEEEEEcCCC
Q 002086 750 --------------DSQVYVWKREEH 761 (969)
Q Consensus 750 --------------Dg~I~IWdl~t~ 761 (969)
||.|++||+.++
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred CCccccccccccccceEEEEEECCCC
Confidence 579999999873
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-24 Score=237.58 Aligned_cols=256 Identities=8% Similarity=0.035 Sum_probs=193.1
Q ss_pred cccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 436 KDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
|++...+.+..+. .+.|.++.|+|+ |++++.|++|++|+......+....
T Consensus 63 wd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~------------------------- 112 (343)
T 3lrv_A 63 TQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK------------------------- 112 (343)
T ss_dssp EEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT-------------------------
T ss_pred EECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC-------------------------
Confidence 3555555555565 678889999988 9999999999999987532211100
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeE-eccCCCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEEEEe
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCS-FIGHLDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~-l~gH~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
..+.+.. ..+|.+.|.+++|+| +++|++|+.||+|++||+.+++++..+
T Consensus 113 ---------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 165 (343)
T 3lrv_A 113 ---------------------------TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH 165 (343)
T ss_dssp ---------------------------TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE
T ss_pred ---------------------------CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 0111222 236788999999998 579999999999999999999997766
Q ss_pred --ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE--EEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 002086 592 --AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV--DWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIE 666 (969)
Q Consensus 592 --~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~--~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~ 666 (969)
.|...|.+++|+| ++.+|++|+.||.|++||+++++.. .+.. |...|++++|+|++.+|++++ ++.|++||++
T Consensus 166 ~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~ 243 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLR 243 (343)
T ss_dssp CCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETT
T ss_pred ecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcC
Confidence 4566899999999 9999999999999999999998755 5555 789999999999999999999 5599999999
Q ss_pred CCceeeeeeeeecccccCCCCCe--EEEEEcCCCCceEEEEeC-CCcEEEEeCCcceEEEEeecCCCCeEEEEEeC---C
Q 002086 667 DSKLHQLNQVDFQTKKKSSTRKI--TGFQFSPSNPSEVLVTSA-DSRIRILDGLDIVHKFRGFRNTSSQISAAFNA---D 740 (969)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~h~~~I--t~l~fspd~~~~l~sgs~-Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp---d 740 (969)
..+....... ...+...+ .+++|+|++ .+|++++. |+.|++|+..+....+.. ..+..+.|.+ +
T Consensus 244 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 244 KDVGTLAYPT-----YTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTAD 313 (343)
T ss_dssp SSTTCBSSCC-----CBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CC
T ss_pred CCCcceeecc-----cccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccc
Confidence 8765332110 01122223 579999998 78888888 999999996443322222 4567788888 8
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 002086 741 GKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 741 g~~LaSgs~Dg~I~IWdl~t 760 (969)
+..|++++.||.+.++-...
T Consensus 314 ~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp CCEEEEEEETTEEEEEEECS
T ss_pred cceeEEEecCCceEEEEecC
Confidence 89999999999999886543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-23 Score=234.82 Aligned_cols=247 Identities=11% Similarity=0.157 Sum_probs=186.5
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
++..++..... +...|..+++.++++++ ++++.|++|+|||+.+++.+..
T Consensus 46 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~--------------------------- 96 (355)
T 3vu4_A 46 NVHPVAHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR--------------------------- 96 (355)
T ss_dssp EETTEEEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE---------------------------
T ss_pred ecCCcceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE---------------------------
Confidence 44444444333 23358889999988877 5677889999999998876552
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCC-cEEEEeecC
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETK-SCLKLFAHN 594 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~-~~i~~~~h~ 594 (969)
+. |...|.++.|+++..++ + .|+.|++||+.++ +.+..+..
T Consensus 97 ----------------------------------~~-~~~~v~~v~~~~~~~~~-~-~~~~i~i~d~~~~~~~~~~~~~- 138 (355)
T 3vu4_A 97 ----------------------------------IK-VDAPVKDLFLSREFIVV-S-YGDVISVFKFGNPWKRITDDIR- 138 (355)
T ss_dssp ----------------------------------EE-CSSCEEEEEECSSEEEE-E-ETTEEEEEESSTTCCBSSCCEE-
T ss_pred ----------------------------------EE-CCCceEEEEEcCCEEEE-E-EcCEEEEEECCCCceeeEEecc-
Confidence 22 55689999999754433 3 4789999999988 66555544
Q ss_pred CCeEEEEEecCCCCEEEE--EECCCeEEEEeCCCce-----------------EEEEecCCCCEEEEEEccCCCEEEEEe
Q 002086 595 DYVTCIQFNPMDDDYFIS--GSLDAKVRIWSISDRL-----------------VVDWTDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~s--gs~Dg~I~IWDl~~~~-----------------~~~~~~~~~~V~sv~fspdg~~Lasgs 655 (969)
....+++++ .++++ |+.||.|++||+.++. +..+..|...|++++|+|+|++|++|+
T Consensus 139 -~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s 214 (355)
T 3vu4_A 139 -FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS 214 (355)
T ss_dssp -EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence 455566765 55655 5899999999999865 567788999999999999999999999
Q ss_pred CCCc-EEEEEcCCCceeeeeeeeecccccC-CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce----EE-------
Q 002086 656 HKGS-CRLYSIEDSKLHQLNQVDFQTKKKS-STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV----HK------- 722 (969)
Q Consensus 656 ~dg~-I~IwDl~~~~~~~~~~~~~~~~~~~-h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~----~~------- 722 (969)
.|++ |+|||+.+++...... .+ |...|.+++|+|++ .+|++++.|++|++||+.... ..
T Consensus 215 ~d~~~v~iwd~~~~~~~~~~~-------~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~ 286 (355)
T 3vu4_A 215 QDGTIIRVFKTEDGVLVREFR-------RGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM 286 (355)
T ss_dssp TTCSEEEEEETTTCCEEEEEE-------CTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSCCCSEETTTTEEC
T ss_pred CCCCEEEEEECCCCcEEEEEE-------cCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCCcccccccceeec
Confidence 9998 9999999887654321 23 88999999999988 799999999999999965321 00
Q ss_pred -----------EEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 723 -----------FRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 723 -----------~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+... ........++|++||++|++++.||.+++|++...+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 287 KYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0000 011223568999999999999999999999997643
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=224.56 Aligned_cols=296 Identities=13% Similarity=0.109 Sum_probs=194.1
Q ss_pred cccceeeeEecccccC----EEEEEEeCCCC---EEEEEeCCCcEEEEecccc---eEEEeecCCccCcccccccCCCC-
Q 002086 438 LSALHLCQEIQAHEGS----IWTIKFSLDAR---FLASAGEDRVIHVWEVQEC---EVMSMSEGNLTPIHPSLCNSSDK- 506 (969)
Q Consensus 438 l~~~~l~~~L~gH~~~----I~~l~fSpDg~---~LaTgs~DgtVrIWDl~tg---~~l~~~~~~~~~v~~~~~~~~~~- 506 (969)
...++++.+|+.-.+. +.++-|-..|- .++++++ .+|++|+..++ +.+.+..++..++..+.+.+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 100 (356)
T 2w18_A 22 PGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN 100 (356)
T ss_dssp --CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS
T ss_pred cceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc
Confidence 3456677777766553 45555544333 6788885 57999999999 88888888887776666554321
Q ss_pred -CccCCCCCCCCCcccccCCCCCCCCcccccceeeecC---CCceeEeccCCCCEEEEEecCCcEEEEEe--CCCcEEEE
Q 002086 507 -ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLS---EKPFCSFIGHLDDVLDLSWSRSHLLLSSS--MDKTVRLW 580 (969)
Q Consensus 507 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs--~DgtV~IW 580 (969)
.....|..... ......+... ......-.+|...|..+ ..++++.+++ .|+.|++|
T Consensus 101 ~~~~~~~~~~~~----------------~v~sla~spd~~~~~~~l~s~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~ 162 (356)
T 2w18_A 101 LVCVALGNLEIR----------------EIRALFCSSDDESEKQVLLKSGNIKAVLGL--TKRRLVSSSGTLSDQQVEVM 162 (356)
T ss_dssp CEEEEECSSSEE----------------EEEEECC------CCEEEEEEEEEEEEEEE--TTTEEEEEESSSTTCEEEEE
T ss_pred eeeeeecccccc----------------ceEEEEECCCccccccEEEeCCCeEEEEec--CCCcEEEecccCCCCcEEEE
Confidence 11111211110 0000111111 01222224555555554 2244444433 59999999
Q ss_pred ECC-CCcEEEEe-ecCCCeEEEEEecC--CCCEEEEEECCCeEEEEeCCCceEEEEec-CC---CCEEEEEEccCCCEE-
Q 002086 581 DME-TKSCLKLF-AHNDYVTCIQFNPM--DDDYFISGSLDAKVRIWSISDRLVVDWTD-LH---EMVTAACYTPDGQNA- 651 (969)
Q Consensus 581 Dl~-t~~~i~~~-~h~~~V~sv~fsp~--~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~-~~---~~V~sv~fspdg~~L- 651 (969)
++. .++.+..+ .|...++.++|++. ++.+|++++.|++|+|||+.+++.+..+. +. ..+.+++|+|+|.++
T Consensus 163 ~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lv 242 (356)
T 2w18_A 163 TFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFI 242 (356)
T ss_dssp EECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEE
T ss_pred EECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEE
Confidence 994 47776654 88888888888874 56899999999999999999998776553 33 357888999999876
Q ss_pred -----------EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 652 -----------LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 652 -----------asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
++|+.|++|++||..+++......+.+ ..+|...+.+..++ + .++++++.|++|+|||.....
T Consensus 243 s~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~---p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 243 VLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL---PPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp EEC------------CCEEEEEEETTTTEEEEEEEECC---CTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCS
T ss_pred EeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec---cCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCc
Confidence 567889999999999998765433222 13455555555554 3 689999999999999987765
Q ss_pred EEEEeecCCCCeE-EEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 721 HKFRGFRNTSSQI-SAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 721 ~~~~~~~~~~~V~-sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
.......|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 317 ~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 5444444444444 5899999999999999999999996
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-22 Score=227.19 Aligned_cols=275 Identities=11% Similarity=0.108 Sum_probs=210.1
Q ss_pred CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecC
Q 002086 464 RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLS 543 (969)
Q Consensus 464 ~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 543 (969)
.++++++.|+.|++||+.+++.+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~-------------------------------------------------------- 26 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA-------------------------------------------------------- 26 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE--------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE--------------------------------------------------------
Confidence 468899999999999999887655
Q ss_pred CCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEECCCeEE
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSLDAKVR 620 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~Dg~I~ 620 (969)
.+.+| ..+.+++|+| +.+| ++++.|++|++||+.+++++..+.+...+.+++|+| ++.+|+ +++.++.|+
T Consensus 27 -----~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 27 -----TIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLS 99 (391)
T ss_dssp -----EEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEE
T ss_pred -----EeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC-CCCEEEEEECCCCEEE
Confidence 23334 3489999999 6655 677799999999999999999987777999999999 888775 455679999
Q ss_pred EEeCCCceEEEEecCCCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 621 IWSISDRLVVDWTDLHEMVTAACYTPDGQNA-LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 621 IWDl~~~~~~~~~~~~~~V~sv~fspdg~~L-asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
+||+.+++.+....+...+.+++|+|++++| ++++.++.|++||+.+++...... ....+.+++|+|++.
T Consensus 100 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------~~~~~~~~~~~~dg~ 170 (391)
T 1l0q_A 100 VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS---------VGRSPKGIAVTPDGT 170 (391)
T ss_dssp EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---------CCSSEEEEEECTTSS
T ss_pred EEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe---------cCCCcceEEECCCCC
Confidence 9999999988888888889999999999987 677889999999999887654321 234579999999985
Q ss_pred ceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe---CCCcEEEEEcCCCCccCCCceeEEeccc
Q 002086 700 SEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS---EDSQVYVWKREEHRNASTGKRAIITTRN 776 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs---~Dg~I~IWdl~t~~~~~t~k~~~~~~~~ 776 (969)
.++++++.++.|++||......... ..+...+.+++|+|+|++|++++ .++.|++||+.++ +.+.....
T Consensus 171 ~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~------~~~~~~~~- 242 (391)
T 1l0q_A 171 KVYVANFDSMSISVIDTVTNSVIDT-VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN------KITARIPV- 242 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT------EEEEEEEC-
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEE-EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC------eEEEEEec-
Confidence 4557778899999999876544332 33456788999999999999988 6899999999873 22211111
Q ss_pred CCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCc-cccCCCCccccCCCCCCccccCCCCC
Q 002086 777 HEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGS-PAGHSRRLLPPLPKKTNKVERVPSPP 855 (969)
Q Consensus 777 ~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i-~~~~~~~~L~~~~~~s~~~~~~l~~p 855 (969)
+. .+....++|++.++ ++...+..+..|...++.+...+..+
T Consensus 243 ~~-------------------------------------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 243 GP-------------------------------------DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp CS-------------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred CC-------------------------------------CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 10 01223456777666 45566778888877776665554433
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=258.39 Aligned_cols=253 Identities=15% Similarity=0.188 Sum_probs=196.9
Q ss_pred eEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECC--CCcEEEEe-ecCCCeEEEEEecCC--CCEEEEEECCCeEEE
Q 002086 548 CSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDME--TKSCLKLF-AHNDYVTCIQFNPMD--DDYFISGSLDAKVRI 621 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~--t~~~i~~~-~h~~~V~sv~fsp~~--~~~L~sgs~Dg~I~I 621 (969)
..+.+|.+.|++++|+| +++|++|+.||+|+|||+. +++++..+ +|...|++++|+| + +++|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEE
Confidence 36789999999999999 8899999999999999998 44555555 7999999999998 5 899999999999999
Q ss_pred EeCCCce---EEEEecCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 622 WSISDRL---VVDWTDLHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 622 WDl~~~~---~~~~~~~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
||+.++. ......|...|.+++|+|+ +.++++|+.||.|++||+.......... ...|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~------~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------IDAHAIGVNSASWAP 155 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE------EECCSSCEEEEEECC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE------eecCCCceEEEEecC
Confidence 9999884 4456668899999999999 9999999999999999998875432221 256888999999999
Q ss_pred C------------CCceEEEEeCCCcEEEEeCCcc----eEEEEeecCCCCeEEEEEeCC---CCEEEEEeCCCcEEEEE
Q 002086 697 S------------NPSEVLVTSADSRIRILDGLDI----VHKFRGFRNTSSQISAAFNAD---GKYIISASEDSQVYVWK 757 (969)
Q Consensus 697 d------------~~~~l~sgs~Dg~I~IwD~~~~----~~~~~~~~~~~~V~sl~fspd---g~~LaSgs~Dg~I~IWd 757 (969)
. ++..+++++.||.|++||.... ........|...|.+++|+|+ +.+|++|+.||.|++||
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5 2479999999999999996543 233344567788999999999 99999999999999999
Q ss_pred cCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCc
Q 002086 758 REEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRL 837 (969)
Q Consensus 758 l~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~ 837 (969)
+.+++...... ... ...........+++|++.++++++.++.
T Consensus 236 ~~~~~~~~~~~----~~~----------------------------------~~~~~~~v~~l~~spdg~~l~s~s~Dg~ 277 (753)
T 3jro_A 236 QDNEQGPWKKT----LLK----------------------------------EEKFPDVLWRASWSLSGNVLALSGGDNK 277 (753)
T ss_dssp ESSSSSCCBCC----BSS----------------------------------SSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred CCCCCCcceeE----Eec----------------------------------cCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence 98743211000 000 0001111234567888888888888888
Q ss_pred cccCCCCC
Q 002086 838 LPPLPKKT 845 (969)
Q Consensus 838 L~~~~~~s 845 (969)
+..|....
T Consensus 278 I~vwd~~~ 285 (753)
T 3jro_A 278 VTLWKENL 285 (753)
T ss_dssp EECCBCCS
T ss_pred EEEEecCC
Confidence 88887653
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=233.83 Aligned_cols=208 Identities=13% Similarity=0.180 Sum_probs=170.1
Q ss_pred eEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCC----------CcEEEEe-ecCCCeEEEEEecCCCC-EEEEE
Q 002086 548 CSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMET----------KSCLKLF-AHNDYVTCIQFNPMDDD-YFISG 613 (969)
Q Consensus 548 ~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t----------~~~i~~~-~h~~~V~sv~fsp~~~~-~L~sg 613 (969)
....+|.+.|++++|+| +.+|++++.||.|++||+.+ ...+..+ +|...|.+++|+| ++. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEE
Confidence 35678999999999999 46899999999999999986 4444444 8999999999999 666 99999
Q ss_pred ECCCeEEEEeCCCce--------EEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 614 SLDAKVRIWSISDRL--------VVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 614 s~Dg~I~IWDl~~~~--------~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
+.||.|++||+..+. ...+..|...|.+++|+| ++.+|++++.||.|++||++....... ......
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~-----~~~~~~ 275 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP-----SHTVDA 275 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSC-----SEEEEC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc-----eeEeec
Confidence 999999999998731 234557888999999999 678999999999999999997631110 111146
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCCC
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGK-YIISASEDSQVYVWKREEH 761 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~-~LaSgs~Dg~I~IWdl~t~ 761 (969)
|...|.+++|+|++..+|++++.|+.|++||.... ........|...|.+++|+|+++ +|++++.||.|+|||+...
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 88899999999998668999999999999997752 22223334677899999999985 7999999999999999863
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-21 Score=215.70 Aligned_cols=285 Identities=13% Similarity=0.060 Sum_probs=185.5
Q ss_pred CcEEEEeeCCCCcEEEEeeccCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccc
Q 002086 289 GAFFLIKNLDTGKEFIVNEYSENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSK 368 (969)
Q Consensus 289 ~~~~~i~~ld~g~~~vv~~~~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~ 368 (969)
|-+..-|-..+++|..+..-.+ ..++||+..++.+ -+.+.+..+|.-.|.++.+..+. .+.+++-++.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~--~~v~lw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~ 108 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE--DVVSLWKALDAWQ--WEKLYTWHFAEVPVLQIVPVPDV--------YNLVCVALGN 108 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES--SEEEEEEESSSSB--EEEEEEEECCSSCEEEECCCTTC--------CSCEEEEECS
T ss_pred EEeeeeeccCCCCccEEEEecc--ceEEEcccCCCcc--ceeeEEEeccCceeEEEEEcCcc--------cceeeeeecc
Confidence 3345557778888876655555 4579999999943 13467788999889888843222 1222222111
Q ss_pred cccccccccccccceeeeeEEEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEec
Q 002086 369 SLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQ 448 (969)
Q Consensus 369 ~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~ 448 (969)
. +. ..+.+++|+++..+ ...++. -.
T Consensus 109 ~----------~~----~~v~sla~spd~~~----------------------~~~~l~-------------------s~ 133 (356)
T 2w18_A 109 L----------EI----REIRALFCSSDDES----------------------EKQVLL-------------------KS 133 (356)
T ss_dssp S----------SE----EEEEEECC----------------------------CCEEEE-------------------EE
T ss_pred c----------cc----cceEEEEECCCccc----------------------cccEEE-------------------eC
Confidence 0 11 22333433434222 011111 12
Q ss_pred ccccCEEEEEEeCCCCEEEEEe--CCCcEEEEecc-cceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAG--EDRVIHVWEVQ-ECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs--~DgtVrIWDl~-tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
+|...|+++ ++|+++.+++ .|++|++|++. +|+.+.
T Consensus 134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~-------------------------------------- 172 (356)
T 2w18_A 134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE-------------------------------------- 172 (356)
T ss_dssp EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEE--------------------------------------
T ss_pred CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceee--------------------------------------
Confidence 345555554 5666666644 58888888874 344332
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC----CcEEEEEeCCCcEEEEECCCCcEEEEee-c---CCCe
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR----SHLLLSSSMDKTVRLWDMETKSCLKLFA-H---NDYV 597 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~----~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h---~~~V 597 (969)
.+.+|...+..++|++ +.+|++|+.|++|+|||+.++++++++. | ...+
T Consensus 173 -----------------------s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v 229 (356)
T 2w18_A 173 -----------------------NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASV 229 (356)
T ss_dssp -----------------------EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCC
T ss_pred -----------------------eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeee
Confidence 4557888787888876 4899999999999999999999999883 3 3468
Q ss_pred EEEEEecCCCCEE------------EEEECCCeEEEEeCCCceEEEEe------cCCCCEEEEEEccCCCEEEEEeCCCc
Q 002086 598 TCIQFNPMDDDYF------------ISGSLDAKVRIWSISDRLVVDWT------DLHEMVTAACYTPDGQNALIGSHKGS 659 (969)
Q Consensus 598 ~sv~fsp~~~~~L------------~sgs~Dg~I~IWDl~~~~~~~~~------~~~~~V~sv~fspdg~~Lasgs~dg~ 659 (969)
.+++|+| ++.++ ++|+.|++|++||..+++.+... +|...+.+..++ +.++++|+.|++
T Consensus 230 ~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgT 306 (356)
T 2w18_A 230 CHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGT 306 (356)
T ss_dssp EEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSC
T ss_pred EEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCc
Confidence 8889999 88776 56889999999999999876543 334444444443 789999999999
Q ss_pred EEEEEcCCCceeeeeeeeecccccCCCCCeE-EEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT-GFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 660 I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It-~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
|+|||+.+++..... .+|...+. .++|+|++ .+|++|+.|++|+|||.
T Consensus 307 IkIWDl~tGk~l~tL--------~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 307 IAIWDLLLGQCTALL--------PPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTTCSEEEEE--------CCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCcEEEEe--------cCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence 999999999876543 45655544 68999998 89999999999999983
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-23 Score=236.39 Aligned_cols=210 Identities=15% Similarity=0.157 Sum_probs=145.4
Q ss_pred ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe------ecCCCeEEEEEec-------CCCCEEEEEECC
Q 002086 551 IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF------AHNDYVTCIQFNP-------MDDDYFISGSLD 616 (969)
Q Consensus 551 ~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~------~h~~~V~sv~fsp-------~~~~~L~sgs~D 616 (969)
..|...+....+.+ +.+|++|+.|++|+|||+.++++.... +|.+.|++|+|+| .++++|++|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 34555555555555 678999999999999999998765432 7999999999987 257899999999
Q ss_pred CeEEEEeCCCc-eEEEEecCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeee-----------------
Q 002086 617 AKVRIWSISDR-LVVDWTDLHEMVTAACYTPDGQ-NALIGSHKGSCRLYSIEDSKLHQLNQVD----------------- 677 (969)
Q Consensus 617 g~I~IWDl~~~-~~~~~~~~~~~V~sv~fspdg~-~Lasgs~dg~I~IwDl~~~~~~~~~~~~----------------- 677 (969)
++|+|||+.++ .+.....+...|.+++|+|++. +|++|+.||+|++||+++++........
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 99999999765 5667788999999999999875 7999999999999999887643211100
Q ss_pred ecccccCCCCCeEEEEEc-CCCCceEEEEeCCCcEEEEeCCcceEEEE------------------eecCCCCeEEEEEe
Q 002086 678 FQTKKKSSTRKITGFQFS-PSNPSEVLVTSADSRIRILDGLDIVHKFR------------------GFRNTSSQISAAFN 738 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fs-pd~~~~l~sgs~Dg~I~IwD~~~~~~~~~------------------~~~~~~~V~sl~fs 738 (969)
......+|...+.++.|+ |++ ..+++++.|+++++||+........ ..........+.|+
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp ------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 011124677889999987 555 8999999999999999653221111 11111222233454
Q ss_pred C--CCCEEEEEeCCCcEEEEEcCCC
Q 002086 739 A--DGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 739 p--dg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
| ++.++++|+.||.|+|||+.++
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~ 349 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEK 349 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCT
T ss_pred cCCCCEEEEEECCCCEEEEEECCCC
Confidence 4 4557788889999999999874
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-21 Score=220.80 Aligned_cols=251 Identities=11% Similarity=0.077 Sum_probs=197.6
Q ss_pred cccc--ccceee--eEecccccCEEEEEEeC--------------CCCEEEEEeCC------CcEEEEecccceEEEeec
Q 002086 435 YKDL--SALHLC--QEIQAHEGSIWTIKFSL--------------DARFLASAGED------RVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 435 l~dl--~~~~l~--~~L~gH~~~I~~l~fSp--------------Dg~~LaTgs~D------gtVrIWDl~tg~~l~~~~ 490 (969)
+||+ .+.+++ ..+.+|...|..+++++ .+..|+.++.+ +.|++||+..+.
T Consensus 97 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~------ 170 (415)
T 2hqs_A 97 LVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN------ 170 (415)
T ss_dssp EEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS------
T ss_pred EEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC------
Confidence 4566 555555 56899999999888875 15666666654 799999986322
Q ss_pred CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE
Q 002086 491 GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL 569 (969)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~ 569 (969)
...+.+|...|.+++|+| +++|+
T Consensus 171 --------------------------------------------------------~~~l~~~~~~v~~~~~Spdg~~la 194 (415)
T 2hqs_A 171 --------------------------------------------------------QFVVHRSPQPLMSPAWSPDGSKLA 194 (415)
T ss_dssp --------------------------------------------------------CEEEEEESSCEEEEEECTTSSEEE
T ss_pred --------------------------------------------------------CEEEeCCCCcceeeEEcCCCCEEE
Confidence 125667889999999999 88999
Q ss_pred EEeCCC---cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEE-EEECCCe--EEEEeCCCceEEEEecCCCCEEEEE
Q 002086 570 SSSMDK---TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI-SGSLDAK--VRIWSISDRLVVDWTDLHEMVTAAC 643 (969)
Q Consensus 570 Sgs~Dg---tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~-sgs~Dg~--I~IWDl~~~~~~~~~~~~~~V~sv~ 643 (969)
+++.++ .|++||+.++++.....|...+.+++|+| ++.+|+ +++.++. |++||+.+++...+..+...+.+++
T Consensus 195 ~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 195 YVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 273 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEE
T ss_pred EEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceE
Confidence 999885 99999999999988778999999999999 888777 6666655 9999999998888888888999999
Q ss_pred EccCCCEEEEEeC-CC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC---CcEEEEeCC
Q 002086 644 YTPDGQNALIGSH-KG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD---SRIRILDGL 717 (969)
Q Consensus 644 fspdg~~Lasgs~-dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D---g~I~IwD~~ 717 (969)
|+|+|++|++++. ++ .|++||+.+++.... ..+...+..++|+|++ .+|++++.+ ..|++||..
T Consensus 274 ~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l---------~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 274 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI---------TWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC---------CCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETT
T ss_pred ECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE---------ecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECC
Confidence 9999999998886 44 678889887764221 2345678899999998 566666553 589999976
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEEcCC
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDS---QVYVWKREE 760 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg---~I~IWdl~t 760 (969)
..... ....+ ..+.+++|+|||++|++++.|+ .|++||+..
T Consensus 344 ~~~~~-~l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 344 TGGVQ-VLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp TCCEE-ECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred CCCEE-EecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence 54432 22223 3789999999999999998887 799999875
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=224.58 Aligned_cols=247 Identities=12% Similarity=0.143 Sum_probs=184.0
Q ss_pred CcEEEEEeCC------CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC---eEEEEeCCCceEEEEecC
Q 002086 565 SHLLLSSSMD------KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA---KVRIWSISDRLVVDWTDL 635 (969)
Q Consensus 565 ~~~L~Sgs~D------gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg---~I~IWDl~~~~~~~~~~~ 635 (969)
+..++.++.+ ++|++||+..+.......|...|.+++|+| ++++|++++.++ .|++||+.+++...+..+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~ 221 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASF 221 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecC
Confidence 4566666554 799999998777666668999999999999 999999999885 999999999998888888
Q ss_pred CCCEEEEEEccCCCEEE-EEeCCCc--EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC-CC--
Q 002086 636 HEMVTAACYTPDGQNAL-IGSHKGS--CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA-DS-- 709 (969)
Q Consensus 636 ~~~V~sv~fspdg~~La-sgs~dg~--I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~-Dg-- 709 (969)
...+.+++|+|+|++|+ +++.++. |++||+.+++.... ..+...+.+++|+|++ ..|++++. ++
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l---------~~~~~~~~~~~~spdg-~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV---------TDGRSNNTEPTWFPDS-QNLAFTSDQAGRP 291 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC---------CCCSSCEEEEEECTTS-SEEEEEECTTSSC
T ss_pred CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC---------cCCCCcccceEECCCC-CEEEEEECCCCCc
Confidence 88999999999999888 5666654 99999988765322 4566789999999998 66666665 45
Q ss_pred cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEEcCCCCccCCCceeEEecccCCceeeeeeE
Q 002086 710 RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED---SQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVS 786 (969)
Q Consensus 710 ~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D---g~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s 786 (969)
.|++||....... ....+...+.+++|+|||++|++++.+ ..|++||+.+++ .. ..... .
T Consensus 292 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~------~~-~l~~~-~-------- 354 (415)
T 2hqs_A 292 QVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------VQ-VLSST-F-------- 354 (415)
T ss_dssp EEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC------EE-ECCCS-S--------
T ss_pred EEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC------EE-EecCC-C--------
Confidence 6778886654322 222344568899999999999988865 589999998732 11 11100 0
Q ss_pred EeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCC---ccccCCCCCCccccCCCCCCCCccccc
Q 002086 787 VAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRR---LLPPLPKKTNKVERVPSPPEEELSLIS 863 (969)
Q Consensus 787 ~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~---~L~~~~~~s~~~~~~l~~pee~l~~is 863 (969)
....+.++|++.+++..+.+. .++.|+..+. ..+.++.+...+.+++
T Consensus 355 -----------------------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~~~~~~v~~~~ 404 (415)
T 2hqs_A 355 -----------------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLPATDGQVKFPA 404 (415)
T ss_dssp -----------------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEEECCCSSSEEEEEE
T ss_pred -----------------------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-cEEEeeCCCCCCcCCc
Confidence 112345678887776666555 6888877644 4456678888899999
Q ss_pred cCCCCC
Q 002086 864 HDPGIS 869 (969)
Q Consensus 864 ~hP~~~ 869 (969)
|+|...
T Consensus 405 ~~~~~~ 410 (415)
T 2hqs_A 405 WSPYLH 410 (415)
T ss_dssp ECCCCC
T ss_pred cccccc
Confidence 988754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-19 Score=194.61 Aligned_cols=250 Identities=14% Similarity=0.179 Sum_probs=177.3
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCC-CcEEEEecc--cceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGED-RVIHVWEVQ--ECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~D-gtVrIWDl~--tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
.|...+.+++|+|+|++|++++.+ +.|++|++. +++...
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-------------------------------------- 76 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-------------------------------------- 76 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--------------------------------------
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee--------------------------------------
Confidence 478889999999999999998886 999999987 443221
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECC---CCcEEEEeecCCCeEEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-MDKTVRLWDME---TKSCLKLFAHNDYVTCI 600 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~---t~~~i~~~~h~~~V~sv 600 (969)
+..+..+. .+..++|+| +++|++++ .++.|.+||+. ..+.+..+.....+.++
T Consensus 77 ---------------------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 134 (343)
T 1ri6_A 77 ---------------------AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSA 134 (343)
T ss_dssp ---------------------EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCC
T ss_pred ---------------------ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEE
Confidence 01222222 677899999 67676665 48899999994 44455556666679999
Q ss_pred EEecCCCCEEEEEE-CCCeEEEEeCCC-ceEEE-----Ee-cCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC--Cc
Q 002086 601 QFNPMDDDYFISGS-LDAKVRIWSISD-RLVVD-----WT-DLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIED--SK 669 (969)
Q Consensus 601 ~fsp~~~~~L~sgs-~Dg~I~IWDl~~-~~~~~-----~~-~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~--~~ 669 (969)
+|+| ++++|++++ .++.|++||+.+ +++.. .. .....+..++|+|+++++++++ .++.|.+|++.. ++
T Consensus 135 ~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~ 213 (343)
T 1ri6_A 135 NISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 213 (343)
T ss_dssp EECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred EECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 9999 888888777 899999999987 65432 22 2345788999999999776655 789999999954 43
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeecCCCCeEEEEEeCCCCEEEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFRNTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~~~~~V~sl~fspdg~~LaS 746 (969)
...................+..++|+|++..+++++..++.|++||... .............+..++|+|+|++|++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA 293 (343)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEE
T ss_pred EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEE
Confidence 3222111111111122456778999999844444566899999999762 2222222222334788999999999888
Q ss_pred Ee-CCCcEEEEEcC
Q 002086 747 AS-EDSQVYVWKRE 759 (969)
Q Consensus 747 gs-~Dg~I~IWdl~ 759 (969)
++ .++.|.+|+++
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 88 58999999765
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-18 Score=207.87 Aligned_cols=260 Identities=12% Similarity=0.107 Sum_probs=195.3
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEec--ccceEEEeecCCccCcccccccCCCCCccCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEV--QECEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl--~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
++|..+++++.++..+.. +.+++|+|||++|++++.|++|++||+ .+++++..
T Consensus 163 v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~------------------------ 217 (543)
T 1nir_A 163 LVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE------------------------ 217 (543)
T ss_dssp EEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE------------------------
T ss_pred EEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE------------------------
Confidence 446777788888884433 999999999999999999999999999 66665442
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-----CcEEEEEe-CCCcEEEEECCCCc
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-----SHLLLSSS-MDKTVRLWDMETKS 586 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-----~~~L~Sgs-~DgtV~IWDl~t~~ 586 (969)
+. +...+..++|+| +++|++++ .+++|.|||..+++
T Consensus 218 -------------------------------------i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 218 -------------------------------------IK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp -------------------------------------EE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred -------------------------------------Ee-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 22 334578899997 57888887 48999999999999
Q ss_pred EEEEee-----------cC-CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE--EecCCCCEEEEEEccCCCEEE
Q 002086 587 CLKLFA-----------HN-DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD--WTDLHEMVTAACYTPDGQNAL 652 (969)
Q Consensus 587 ~i~~~~-----------h~-~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~--~~~~~~~V~sv~fspdg~~La 652 (969)
++..+. |. ..+.++.++|....++++...++.|.+||+.+.+.+. ...+...+..++|+|+|++|+
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence 988773 22 3789999999444566777889999999998754332 445566788999999999877
Q ss_pred EEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCc-------ceEEE
Q 002086 653 IGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLD-------IVHKF 723 (969)
Q Consensus 653 sgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~-------~~~~~ 723 (969)
+++ .+++|.+||+.++++...... ....|......+ ++|++...++++. .|++|.+||... ....-
T Consensus 340 va~~~~~~v~v~D~~tg~l~~~i~~----g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~ 414 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRRLSALVDV----GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 414 (543)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEEC----SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEecCCCeEEEEECCCCeEEEeecc----CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEE
Confidence 655 589999999999987654321 113354444443 5777546666665 689999999754 33333
Q ss_pred EeecCCCCeEEEEEeCCCCEEEEEe-------CCCcEEEEEcCCCC
Q 002086 724 RGFRNTSSQISAAFNADGKYIISAS-------EDSQVYVWKREEHR 762 (969)
Q Consensus 724 ~~~~~~~~V~sl~fspdg~~LaSgs-------~Dg~I~IWdl~t~~ 762 (969)
....+...+..+.|+|||++|++++ .+++|.|||+.+.+
T Consensus 415 ~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 415 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp EEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred EEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 3333445567899999999999987 27799999999854
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-18 Score=219.15 Aligned_cols=283 Identities=12% Similarity=0.033 Sum_probs=202.7
Q ss_pred cccCEEEEEEe-CCCCEEEEEeCCCcEEEEecccceEEEeecCCcc-CcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 450 HEGSIWTIKFS-LDARFLASAGEDRVIHVWEVQECEVMSMSEGNLT-PIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 450 H~~~I~~l~fS-pDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~-~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
|.+.|.+++|+ |||++|++++ ++.|.+|++.+++.... ..+.. .+....+. .........
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~s-dg~~l~~~s--------------- 355 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGD-TKVAFIHGT--------------- 355 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC-SCCSCEEEEEECSS-SEEEEEEEE---------------
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc-cCCCcceEEeeeEc-CCCeEEEEE---------------
Confidence 66789999999 9999999988 88999999988775542 22111 12111121 100000000
Q ss_pred CCCCcccccce-eeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEec
Q 002086 528 SSPDYVHVPET-VFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNP 604 (969)
Q Consensus 528 ~~~~~~~~~~~-v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp 604 (969)
. ..... ++.........+.+|...+..++|+| +++|++++.++.|++||+.+++..... .|...+.+++|+|
T Consensus 356 -~----~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp 430 (1045)
T 1k32_A 356 -R----EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 430 (1045)
T ss_dssp -T----TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred -C----CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC
Confidence 0 00111 33444444555668889999999999 899999999999999999999988887 8899999999999
Q ss_pred CCCCEEEEEECCC----------eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee-
Q 002086 605 MDDDYFISGSLDA----------KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL- 673 (969)
Q Consensus 605 ~~~~~L~sgs~Dg----------~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~- 673 (969)
++.+|++++.++ .|++||+.+++...+..+...+..++|+|+|++|++++.++...+|+.........
T Consensus 431 -DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~ 509 (1045)
T 1k32_A 431 -NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV 509 (1045)
T ss_dssp -TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCS
T ss_pred -CCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccccccc
Confidence 999998887654 89999999998777778888899999999999999999988888887654332100
Q ss_pred ----ee------------------------eeec------ccccCCCCCeEEEEEcCCCCceEEE-------------Ee
Q 002086 674 ----NQ------------------------VDFQ------TKKKSSTRKITGFQFSPSNPSEVLV-------------TS 706 (969)
Q Consensus 674 ----~~------------------------~~~~------~~~~~h~~~It~l~fspd~~~~l~s-------------gs 706 (969)
.. +.+. .....+...+..+.++|++ ..+++ ..
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg-~~~~~~~~~g~~~~~~~~~~ 588 (1045)
T 1k32_A 510 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS-ILIYSVPVHGEFAAYYQGAP 588 (1045)
T ss_dssp CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-EEEEECCCCCSHHHHHHCCC
T ss_pred CceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCC-eEEEEecccCcccccccccC
Confidence 00 0000 0112355778999999988 55554 12
Q ss_pred CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 707 ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 707 ~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
....|++||.......... ..+..++|+|||++|++++.| .|++||+.+++
T Consensus 589 ~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 589 EKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred CCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 3457888887654432222 457789999999999999866 89999998865
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-18 Score=220.58 Aligned_cols=281 Identities=14% Similarity=0.062 Sum_probs=202.8
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEeccc-ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQE-CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~t-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
...+.+|.+.|.++.|+++ .++++++.|++++||.+.. +.....+..+.. .....+.+.........
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~la~~~---------- 263 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFSK---------- 263 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEEE----------
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCEEEEEe----------
Confidence 3456899999999999998 7778888899999998753 322222222111 11111111111110000
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEec-----------cCCCCEEEEEec-C-CcEEEEEeCCCcEEEEECCCCcEEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFI-----------GHLDDVLDLSWS-R-SHLLLSSSMDKTVRLWDMETKSCLK 589 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~-----------gH~~~I~~l~fs-~-~~~L~Sgs~DgtV~IWDl~t~~~i~ 589 (969)
.....++......+..+. .|...+.+++|+ | ++.|++++ ++.|.+|++..++...
T Consensus 264 -----------~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~ 331 (1045)
T 1k32_A 264 -----------GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK 331 (1045)
T ss_dssp -----------TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE
T ss_pred -----------CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE
Confidence 000011111112222222 255678999999 9 77788877 8899999999988777
Q ss_pred EeecCC-CeEEEEEecCCCCEEEEEECCCeEE-EEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 002086 590 LFAHND-YVTCIQFNPMDDDYFISGSLDAKVR-IWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 590 ~~~h~~-~V~sv~fsp~~~~~L~sgs~Dg~I~-IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~ 667 (969)
...|.. .+..++|+ ++..|+.++.++.|. +||+.+++...+..+...+..++|+|+|++|++++.++.|++||+.+
T Consensus 332 ~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t 409 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET 409 (1045)
T ss_dssp CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC
Confidence 667777 89999998 788899988888899 99999888777776668899999999999999999999999999998
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC----------CcEEEEeCCcceEEEEeecCCCCeEEEEE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD----------SRIRILDGLDIVHKFRGFRNTSSQISAAF 737 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D----------g~I~IwD~~~~~~~~~~~~~~~~V~sl~f 737 (969)
++..... ..|...+..++|+|++ .+|++++.+ +.|++||..... ......+...+..++|
T Consensus 410 g~~~~~~--------~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~ 479 (1045)
T 1k32_A 410 GKPTVIE--------RSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAF 479 (1045)
T ss_dssp CCEEEEE--------ECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEE
T ss_pred CceEEec--------cCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceE
Confidence 8764432 3567788999999998 667766654 489999987654 3344455667888999
Q ss_pred eCCCCEEEEEeCCCcEEEEEcCC
Q 002086 738 NADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 738 spdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+|||++|+.++.++...+|+...
T Consensus 480 spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 480 DADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CTTSCEEEEEESCCCCCEECSSS
T ss_pred cCCCCEEEEEecccCCcCcchhc
Confidence 99999999999999888888654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-18 Score=207.24 Aligned_cols=262 Identities=13% Similarity=0.115 Sum_probs=192.3
Q ss_pred ccceeeeEecccccCEEEEEEeC----CCCEEEEEeC-CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 439 SALHLCQEIQAHEGSIWTIKFSL----DARFLASAGE-DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 439 ~~~~l~~~L~gH~~~I~~l~fSp----Dg~~LaTgs~-DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
.+++++.++.. ...+..++|+| ||++|++++. +++|.|||..+++++..+.......
T Consensus 210 ~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~----------------- 271 (543)
T 1nir_A 210 KEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV----------------- 271 (543)
T ss_dssp SSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS-----------------
T ss_pred CCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc-----------------
Confidence 56777888874 45679999999 9999999885 8999999999988877543210000
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCC-CCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEE-
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHL-DDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLK- 589 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~-~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~- 589 (969)
. ....|. ..+.++.+++ ..++++...+++|.+||+.+.+.+.
T Consensus 272 -----------------------------~-----~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~ 317 (543)
T 1nir_A 272 -----------------------------D-----TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV 317 (543)
T ss_dssp -----------------------------S-----SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE
T ss_pred -----------------------------C-----ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee
Confidence 0 000132 3788999998 4567778889999999998876544
Q ss_pred -EeecCCCeEEEEEecCCCCEEEEEE-CCCeEEEEeCCCceEEEEec-----CCCCEEEEEEccC-CCEEEEEe-CCCcE
Q 002086 590 -LFAHNDYVTCIQFNPMDDDYFISGS-LDAKVRIWSISDRLVVDWTD-----LHEMVTAACYTPD-GQNALIGS-HKGSC 660 (969)
Q Consensus 590 -~~~h~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IWDl~~~~~~~~~~-----~~~~V~sv~fspd-g~~Lasgs-~dg~I 660 (969)
.+.+...+.+++|+| ++++|++++ .+++|.+||+.+++++.... |......+ ++|+ +..++++. .+++|
T Consensus 318 ~~i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 318 TSIGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp EEEECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEE
T ss_pred EEeccCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceE
Confidence 557778899999999 888776654 58999999999998876554 33333333 5777 55566665 58999
Q ss_pred EEEEcCC-------CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe-------CCCcEEEEeCCcceEEEEe-
Q 002086 661 RLYSIED-------SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-------ADSRIRILDGLDIVHKFRG- 725 (969)
Q Consensus 661 ~IwDl~~-------~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-------~Dg~I~IwD~~~~~~~~~~- 725 (969)
.+||+.+ .+.+.. ...+...+..++|+|++ .+|++++ .+++|.+||..+....+..
T Consensus 396 ~v~d~~~~~~~~~~~~~v~~--------l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~ 466 (543)
T 1nir_A 396 SLIGTDPKNHPQYAWKKVAE--------LQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL 466 (543)
T ss_dssp EEEECCTTTCTTTBTSEEEE--------EECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred EEEEeCCCCCchhcCeEEEE--------EEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCCCCCCeEEe
Confidence 9999988 444332 24566778889999998 6777776 2779999997754433222
Q ss_pred --------ecCCCCeEEEEEeCCCCEEEEEe-----CCCcEEEEEcCCCCc
Q 002086 726 --------FRNTSSQISAAFNADGKYIISAS-----EDSQVYVWKREEHRN 763 (969)
Q Consensus 726 --------~~~~~~V~sl~fspdg~~LaSgs-----~Dg~I~IWdl~t~~~ 763 (969)
..+...+..+.|+|+|++|+.+. .|+.|.|||..+.++
T Consensus 467 ~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 467 PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp CHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred echhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 23456788999999999998763 479999999998543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-18 Score=188.34 Aligned_cols=254 Identities=10% Similarity=0.102 Sum_probs=182.7
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeC-CCcEEEEecccceE-EEeecCCccCcccccccCCCCCccCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGE-DRVIHVWEVQECEV-MSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~-DgtVrIWDl~tg~~-l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
++++.+.++...+..+...+ +++|+|||++|++++. ++.|.+||+.+++. ..
T Consensus 24 ~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~------------------------- 77 (331)
T 3u4y_A 24 FFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV------------------------- 77 (331)
T ss_dssp EEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE-------------------------
T ss_pred EEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE-------------------------
Confidence 44666677777777777778 9999999997766665 89999999987654 22
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC---cEEEEECCCCcEE
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK---TVRLWDMETKSCL 588 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg---tV~IWDl~t~~~i 588 (969)
.+..+...+.+++|+| +++|+++..++ .|.+||+.+++.+
T Consensus 78 ------------------------------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~ 121 (331)
T 3u4y_A 78 ------------------------------------AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI 121 (331)
T ss_dssp ------------------------------------EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE
T ss_pred ------------------------------------ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE
Confidence 2333445555589999 77788555553 8999999999999
Q ss_pred EEeecCCCeEEEEEecCCCC-EEEEEECCCe-EEEEeCCCce-E----EEEecCCCCEEEEEEccCCCEEEEEe-CCCcE
Q 002086 589 KLFAHNDYVTCIQFNPMDDD-YFISGSLDAK-VRIWSISDRL-V----VDWTDLHEMVTAACYTPDGQNALIGS-HKGSC 660 (969)
Q Consensus 589 ~~~~h~~~V~sv~fsp~~~~-~L~sgs~Dg~-I~IWDl~~~~-~----~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I 660 (969)
..+.+...+.+++|+| +++ ++++...++. |.+|++.... + .........+..++|+|+|+++++++ .++.|
T Consensus 122 ~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 200 (331)
T 3u4y_A 122 STIPIPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSI 200 (331)
T ss_dssp EEEECCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEECCCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeE
Confidence 8888778889999999 776 4555566688 9999987532 2 23334456689999999999766554 68899
Q ss_pred EEEEcCCCce---eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-E-eecC----C--
Q 002086 661 RLYSIEDSKL---HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-R-GFRN----T-- 729 (969)
Q Consensus 661 ~IwDl~~~~~---~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-~-~~~~----~-- 729 (969)
.+||+.+++. .... .....+..++|+|++..++++...++.|.+||........ . .... .
T Consensus 201 ~v~d~~~~~~~~~~~~~---------~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 271 (331)
T 3u4y_A 201 GILETQNPENITLLNAV---------GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP 271 (331)
T ss_dssp EEEECSSTTSCEEEEEE---------ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG
T ss_pred EEEECCCCcccceeeec---------cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC
Confidence 9999998876 2221 1235677899999984344444567889999976543311 1 1111 1
Q ss_pred -CCeEEEEEeCCCCEEEEEeC-CCcEEEEEcCC
Q 002086 730 -SSQISAAFNADGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 730 -~~V~sl~fspdg~~LaSgs~-Dg~I~IWdl~t 760 (969)
.....++|+|||++|++++. ++.|.+||+.+
T Consensus 272 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 272 LFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp GTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred cccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 11245899999998876655 56999999986
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-18 Score=184.33 Aligned_cols=241 Identities=16% Similarity=0.124 Sum_probs=176.0
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEeccc-ceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQE-CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~t-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
++...+.. .+..|.+.|.+++|+|||++|++++ ++.|++||+.+ ++....
T Consensus 28 d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~--------------------------- 78 (297)
T 2ojh_A 28 NIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV--------------------------- 78 (297)
T ss_dssp ETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC---------------------------
T ss_pred eCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe---------------------------
Confidence 34444433 4667999999999999999999987 78999999987 654331
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccC-CCCEEEEEecC-CcEEEEEe--CCCcEEE--EECCCCcEEE
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGH-LDDVLDLSWSR-SHLLLSSS--MDKTVRL--WDMETKSCLK 589 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH-~~~I~~l~fs~-~~~L~Sgs--~DgtV~I--WDl~t~~~i~ 589 (969)
+.+| ...|.+++|+| +++|++++ .++.+.| |++.+++. .
T Consensus 79 ----------------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~ 123 (297)
T 2ojh_A 79 ----------------------------------DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-R 123 (297)
T ss_dssp ----------------------------------CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-E
T ss_pred ----------------------------------ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-E
Confidence 1122 35677899999 78898888 3344444 55566553 4
Q ss_pred EeecCCCeEEEEEecCCCCEEE-EEECCCeEEEEeC--CCceEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEc
Q 002086 590 LFAHNDYVTCIQFNPMDDDYFI-SGSLDAKVRIWSI--SDRLVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSI 665 (969)
Q Consensus 590 ~~~h~~~V~sv~fsp~~~~~L~-sgs~Dg~I~IWDl--~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl 665 (969)
.+.+...+.+++|+| ++.+|+ ++..++.++||++ .++....+..+...+.+++|+|++++|++++ .++.++||++
T Consensus 124 ~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~ 202 (297)
T 2ojh_A 124 LMTKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRV 202 (297)
T ss_dssp ECCSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EeecCCCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEE
Confidence 444445599999999 888776 7888999999985 5667777777788899999999999888766 5899999988
Q ss_pred C-CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-----------CcEEEEeCCcc--eEEEEeecCCCC
Q 002086 666 E-DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-----------SRIRILDGLDI--VHKFRGFRNTSS 731 (969)
Q Consensus 666 ~-~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-----------g~I~IwD~~~~--~~~~~~~~~~~~ 731 (969)
. ....... ...+...+..+.|+|++ .+|++++.+ +.|++||.... ........+...
T Consensus 203 ~~~~~~~~~--------~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 273 (297)
T 2ojh_A 203 RVDGSSVER--------ITDSAYGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGT 273 (297)
T ss_dssp ETTSSCEEE--------CCCCSEEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTT
T ss_pred CCCCCCcEE--------EecCCcccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcc
Confidence 6 2222211 13455678899999998 667666654 56999997643 333333456667
Q ss_pred eEEEEEeCCCCEEEEEeCCC
Q 002086 732 QISAAFNADGKYIISASEDS 751 (969)
Q Consensus 732 V~sl~fspdg~~LaSgs~Dg 751 (969)
+..++|+|+|++|++++.|.
T Consensus 274 ~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 274 MNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCSCCBCTTSSEEEEEEECC
T ss_pred cccceECCCCCEEEEEEecc
Confidence 88899999999999887664
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=215.92 Aligned_cols=260 Identities=10% Similarity=0.125 Sum_probs=183.9
Q ss_pred ccCEEEEEEeCCCCEEEEEeC-CC-----cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 451 EGSIWTIKFSLDARFLASAGE-DR-----VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~-Dg-----tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
...|.+++|+|||++|++++. |+ .|++||+.+++.......+... + ++.... ....
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-------~-------~~~~~~--~~~~-- 97 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-------P-------GTETLS--DEEK-- 97 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-----------------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-------c-------cccccc--chhh--
Confidence 567999999999999999998 88 9999999998876644321100 0 000000 0000
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC---cEEEEeecCCCeEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK---SCLKLFAHNDYVTCI 600 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~---~~i~~~~h~~~V~sv 600 (969)
.......+. ....|.+++|+| +++|++++. +.|++||+.++ +......|...+.++
T Consensus 98 ------------------~~~~~~~~~-~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~ 157 (741)
T 2ecf_A 98 ------------------ARRERQRIA-AMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDA 157 (741)
T ss_dssp ----------------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEE
T ss_pred ------------------hhhhhhhhc-cccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccc
Confidence 000000111 123477899999 788888886 99999999998 666666788899999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCC-----------------EEEEEEccCCCEEEEEeCCC-----
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEM-----------------VTAACYTPDGQNALIGSHKG----- 658 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~-----------------V~sv~fspdg~~Lasgs~dg----- 658 (969)
+|+| ++++|+.++ ++.|++||+.+++...+...... +..++|+|||++|++++.|+
T Consensus 158 ~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~ 235 (741)
T 2ecf_A 158 KLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPV 235 (741)
T ss_dssp EECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCE
T ss_pred cCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCce
Confidence 9999 999999887 46899999999887765543322 47899999999999987765
Q ss_pred ----------------------------cEEEEEcCC-CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC--
Q 002086 659 ----------------------------SCRLYSIED-SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA-- 707 (969)
Q Consensus 659 ----------------------------~I~IwDl~~-~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~-- 707 (969)
.|++||+.+ ++...... ...+...+..++| |++ ..|++++.
T Consensus 236 ~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~-pDg-~~l~~~~~~~ 307 (741)
T 2ecf_A 236 QKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDL------GKEQDIYLARVNW-RDP-QHLSFQRQSR 307 (741)
T ss_dssp EEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECC------CSCSSEEEEEEEE-EET-TEEEEEEEET
T ss_pred EecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecC------CCCcceEEEEEEe-CCC-CEEEEEEecc
Confidence 788999988 76432210 0246678999999 998 56665543
Q ss_pred ---CCcEEEEeCCcceE--EEEeecCCC---CeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 708 ---DSRIRILDGLDIVH--KFRGFRNTS---SQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 708 ---Dg~I~IwD~~~~~~--~~~~~~~~~---~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
+..|++||..+... .+..+. .. .+..++|+|||+++++++.||.++||.++
T Consensus 308 ~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 308 DQKKLDLVEVTLASNQQRVLAHETS-PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp TSSEEEEEEEETTTCCEEEEEEEEC-SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred cCCeEEEEEEECCCCceEEEEEcCC-CCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 56799999765432 222221 11 34578999999999999999998888876
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-17 Score=183.62 Aligned_cols=252 Identities=10% Similarity=0.145 Sum_probs=173.2
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeC---CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGE---DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~---DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+..+...+..++|+|||+ |++++. ++.|.+|++.+++....
T Consensus 35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~----------------------------------- 78 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL----------------------------------- 78 (347)
T ss_dssp EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------------------------------
T ss_pred eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------------------------------
Confidence 345667888999999999 554443 68999999976653221
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECC-CCc--EEEEeecC----
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-MDKTVRLWDME-TKS--CLKLFAHN---- 594 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~-t~~--~i~~~~h~---- 594 (969)
..+..+...+..++|+| +++|++++ .++.|.+|++. .+. .+..+.+.
T Consensus 79 ------------------------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p 134 (347)
T 3hfq_A 79 ------------------------NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGP 134 (347)
T ss_dssp ------------------------EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCS
T ss_pred ------------------------eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCC
Confidence 12334566778899999 77788877 78999999996 333 23333322
Q ss_pred ------CCeEEEEEecCCCCEEEEEECCCeEEEEeCC-CceEEEE----ecCCCCEEEEEEccCCCEEEE-EeCCCcEEE
Q 002086 595 ------DYVTCIQFNPMDDDYFISGSLDAKVRIWSIS-DRLVVDW----TDLHEMVTAACYTPDGQNALI-GSHKGSCRL 662 (969)
Q Consensus 595 ------~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~-~~~~~~~----~~~~~~V~sv~fspdg~~Las-gs~dg~I~I 662 (969)
..+.+++|+| +++++++...++.|++|++. ++.+... ......+..++|+|+|+++++ +..++.|.+
T Consensus 135 ~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 135 RPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp STTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence 2488999999 88876777778999999998 5544322 122346888999999997666 556889999
Q ss_pred EEcCC--CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeecCCCCeEEEEE
Q 002086 663 YSIED--SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFRNTSSQISAAF 737 (969)
Q Consensus 663 wDl~~--~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~~~~~V~sl~f 737 (969)
|++.. ++......+............+..++|+|++..++++...++.|.+|+... .........+...+..++|
T Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~ 293 (347)
T 3hfq_A 214 LKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL 293 (347)
T ss_dssp EEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE
T ss_pred EEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE
Confidence 99874 443222221111110111246889999999944446667799999999652 2222222233445779999
Q ss_pred eCCCCEEEEEeCC-CcEEEEEcC
Q 002086 738 NADGKYIISASED-SQVYVWKRE 759 (969)
Q Consensus 738 spdg~~LaSgs~D-g~I~IWdl~ 759 (969)
+|||++|++++.+ +.|.+|+++
T Consensus 294 spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 294 DPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCCEEEEEEcCCCcEEEEEEe
Confidence 9999999888765 899999664
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-17 Score=184.94 Aligned_cols=203 Identities=16% Similarity=0.169 Sum_probs=148.4
Q ss_pred cCCCCEEEEEecC-CcEEEEEeCC-CcEEEEECC--CCcE--EEEeecCCCeEEEEEecCCCCEEEEEEC-CCeEEEEeC
Q 002086 552 GHLDDVLDLSWSR-SHLLLSSSMD-KTVRLWDME--TKSC--LKLFAHNDYVTCIQFNPMDDDYFISGSL-DAKVRIWSI 624 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~Sgs~D-gtV~IWDl~--t~~~--i~~~~h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl 624 (969)
.|...+.+++|+| +++|++++.+ +.|.+|++. +++. +..+.....+.+++|+| ++++|++++. ++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 3566788899999 7888888876 999999998 5553 34444455899999999 8887776665 889999999
Q ss_pred ---CCceEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC-Cceeeee--eeeecccccCCCCCeEEEEEcCC
Q 002086 625 ---SDRLVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIED-SKLHQLN--QVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 625 ---~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~-~~~~~~~--~~~~~~~~~~h~~~It~l~fspd 697 (969)
..............+.+++|+|+|+++++++ .++.|.+||+.+ ++..... ... ......+..++|+|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-----TVEGAGPRHMVFHPN 188 (343)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-----CSTTCCEEEEEECTT
T ss_pred CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc-----cCCCCCcceEEECCC
Confidence 4445555566666789999999999888877 899999999987 5543221 111 223457889999999
Q ss_pred CCceEEEEeCCCcEEEEeCCc--c----eEEEEee----cCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCC
Q 002086 698 NPSEVLVTSADSRIRILDGLD--I----VHKFRGF----RNTSSQISAAFNADGKYIISA-SEDSQVYVWKREE 760 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~~--~----~~~~~~~----~~~~~V~sl~fspdg~~LaSg-s~Dg~I~IWdl~t 760 (969)
+..+++++..++.|++|+... . ....... .....+..++|+|+|++|+.+ ..++.|++|++..
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 843445556899999999742 1 1112111 112356689999999988754 4789999999973
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-17 Score=179.61 Aligned_cols=238 Identities=11% Similarity=0.137 Sum_probs=169.9
Q ss_pred EEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccc
Q 002086 457 IKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHV 535 (969)
Q Consensus 457 l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 535 (969)
..|.+++. .+++++.++.|.+||+.+++.+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~----------------------------------------------- 35 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ----------------------------------------------- 35 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-----------------------------------------------
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-----------------------------------------------
Confidence 34556555 578888899999999998877552
Q ss_pred cceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC-CCcEEEEECCCCcE-EEEee-cCCCeEEEEEecCCCCEEE
Q 002086 536 PETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-DKTVRLWDMETKSC-LKLFA-HNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 536 ~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-DgtV~IWDl~t~~~-i~~~~-h~~~V~sv~fsp~~~~~L~ 611 (969)
+..+...+ +++|+| +++|++++. ++.|.+||+.+++. ...+. +..+..+++|+| ++++|+
T Consensus 36 --------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~ 99 (331)
T 3u4y_A 36 --------------ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAV 99 (331)
T ss_dssp --------------EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEE
T ss_pred --------------EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEE
Confidence 22234455 899999 665665555 89999999999987 66664 444444499999 899888
Q ss_pred EEECCC---eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEE-eCCCc-EEEEEcCCCceeeeeeeeecccccCCC
Q 002086 612 SGSLDA---KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIG-SHKGS-CRLYSIEDSKLHQLNQVDFQTKKKSST 686 (969)
Q Consensus 612 sgs~Dg---~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasg-s~dg~-I~IwDl~~~~~~~~~~~~~~~~~~~h~ 686 (969)
++..++ .|.+||+.+++++........+..++|+|+|++++++ ..++. |.+|++............ .....
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~----~~~~~ 175 (331)
T 3u4y_A 100 TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE----FISGG 175 (331)
T ss_dssp ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE----EECSS
T ss_pred EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc----cccCC
Confidence 655553 8999999999988877777788999999999866554 55688 999999864432211110 11334
Q ss_pred CCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE--EEEeecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCC
Q 002086 687 RKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH--KFRGFRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREEH 761 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~--~~~~~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t~ 761 (969)
..+..++|+|++..+++++..++.|++||...... ..........+..++|+|||++|+.++ .++.|.+||+.++
T Consensus 176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 55899999999844556666789999999764322 122222345677899999999776665 4788999999873
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.3e-18 Score=185.70 Aligned_cols=256 Identities=12% Similarity=0.091 Sum_probs=185.8
Q ss_pred cccccceeeeEecccc-c-CEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCC
Q 002086 436 KDLSALHLCQEIQAHE-G-SIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~-~-~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
+++.+.+.+..+.... . .+.+++|+|||++| ++++.++.|.+||+.+++.+..+....
T Consensus 16 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~------------------- 76 (337)
T 1pby_B 16 IDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST------------------- 76 (337)
T ss_dssp EETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB-------------------
T ss_pred EECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC-------------------
Confidence 3555666666665322 2 58899999999865 556668999999999887765322100
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe------------CCCcEEE
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS------------MDKTVRL 579 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs------------~DgtV~I 579 (969)
...|...+.+++|+| +++|+++. .++.|.+
T Consensus 77 -------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v 119 (337)
T 1pby_B 77 -------------------------------------PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119 (337)
T ss_dssp -------------------------------------TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred -------------------------------------cccccccccceEECCCCCEEEEEecccccccccccccCceEEE
Confidence 000122455788998 66888876 6799999
Q ss_pred EECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC-
Q 002086 580 WDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG- 658 (969)
Q Consensus 580 WDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg- 658 (969)
||+.+++.+..+.....+.+++|+| ++++|+++ ++.|++||+.++++............+.|+|++..+++.+..+
T Consensus 120 ~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 196 (337)
T 1pby_B 120 YDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSG 196 (337)
T ss_dssp EETTTTEEEEEEECCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTT
T ss_pred EECCCCcEEEEEeCCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCC
Confidence 9999999888887777889999999 88877777 6899999999998776554433112347899988776544332
Q ss_pred -----------------------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 659 -----------------------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 659 -----------------------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.|.+||+.+++.. .... ..+...+.+++|+|++ .+++++ ++.|++||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~------~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d 266 (337)
T 1pby_B 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV------RIMDVFYFSTAVNPAK-TRAFGA--YNVLESFD 266 (337)
T ss_dssp EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE------EECSSCEEEEEECTTS-SEEEEE--ESEEEEEE
T ss_pred ceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec------CCCCCceeeEEECCCC-CEEEEe--CCeEEEEE
Confidence 4689999988764 2211 3345678899999998 566666 79999999
Q ss_pred CCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 716 GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.......... .....+.+++|+|||++|++++.++.|++||+.++
T Consensus 267 ~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 267 LEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp TTTTEEEEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred CCCCcCccee-cCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 7764433222 23345778999999999999999999999999884
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.3e-17 Score=179.36 Aligned_cols=243 Identities=9% Similarity=0.074 Sum_probs=182.7
Q ss_pred cccCEEEEEEeCCCCEEEEEeC-------CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 450 HEGSIWTIKFSLDARFLASAGE-------DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~-------DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 86 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-------------------------------- 86 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------------------
Confidence 4567889999999998888774 5689999999887665321
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEeecCC-----
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFAHND----- 595 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~----- 595 (969)
....+..++|++ ++ ++++...++.|.+||..+++.+..+....
T Consensus 87 ------------------------------~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 136 (353)
T 3vgz_A 87 ------------------------------NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE 136 (353)
T ss_dssp ------------------------------ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS
T ss_pred ------------------------------cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc
Confidence 112345678888 56 45555668999999999999888774321
Q ss_pred -----CeEEEEEecCCCCEEEEEE--CCCeEEEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 002086 596 -----YVTCIQFNPMDDDYFISGS--LDAKVRIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 596 -----~V~sv~fsp~~~~~L~sgs--~Dg~I~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~ 667 (969)
.+.+++|+| +++++++++ .++.|.+||+.+++...... +...+..++|+|+|+++++++.++.|.+||+.+
T Consensus 137 ~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~ 215 (353)
T 3vgz_A 137 EVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD 215 (353)
T ss_dssp SCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT
T ss_pred ccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 278999999 888777665 47899999999998887776 556688999999999999999999999999999
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
++....... ....+...+..++|+|++..++++...++.|++||..+........... ...++|+|+|++|+.+
T Consensus 216 ~~~~~~~~~----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 216 NKILSRKKL----LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVT 289 (353)
T ss_dssp TEEEEEEEC----CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEE
T ss_pred CeEEEEEEc----CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEE
Confidence 876544322 1123456788999999985444455556999999976543322222222 2468999999976655
Q ss_pred e-CCCcEEEEEcCCC
Q 002086 748 S-EDSQVYVWKREEH 761 (969)
Q Consensus 748 s-~Dg~I~IWdl~t~ 761 (969)
+ .++.|.+||+.++
T Consensus 290 ~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 290 HRQAGKVSVIDAKSY 304 (353)
T ss_dssp ETTTTEEEEEETTTT
T ss_pred ECCCCeEEEEECCCC
Confidence 5 6899999999873
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-17 Score=172.45 Aligned_cols=199 Identities=14% Similarity=0.092 Sum_probs=148.0
Q ss_pred eccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCC-CcEEEEe-ec-CCCeEEEEEecCCCCEEEEEEC--C--CeEEE
Q 002086 550 FIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMET-KSCLKLF-AH-NDYVTCIQFNPMDDDYFISGSL--D--AKVRI 621 (969)
Q Consensus 550 l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t-~~~i~~~-~h-~~~V~sv~fsp~~~~~L~sgs~--D--g~I~I 621 (969)
+..|...|.+++|+| +++|++++ ++.|++||+.+ ++..... .+ ...|.+++|+| ++.+|++++. + ..|.+
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEE
T ss_pred eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEE
Confidence 345788899999999 78888876 88999999999 8877666 33 47889999999 9999999983 3 44555
Q ss_pred EeCCCceEEEEecCCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcC--CCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 622 WSISDRLVVDWTDLHEMVTAACYTPDGQNAL-IGSHKGSCRLYSIE--DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 622 WDl~~~~~~~~~~~~~~V~sv~fspdg~~La-sgs~dg~I~IwDl~--~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
|++.++....+.. ...+..++|+|++++|+ ++..++.++||++. ++.... ...+...+.++.|+|++
T Consensus 115 ~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~s~dg 184 (297)
T 2ojh_A 115 LPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR---------LTHGEGRNDGPDYSPDG 184 (297)
T ss_dssp EETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE---------CCCSSSCEEEEEECTTS
T ss_pred EECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE---------cccCCCccccceECCCC
Confidence 5656666544433 44589999999999887 67889999999864 333211 13456789999999998
Q ss_pred CceEEEE-eCCCcEEEEeCC-cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC-----------CcEEEEEcCCC
Q 002086 699 PSEVLVT-SADSRIRILDGL-DIVHKFRGFRNTSSQISAAFNADGKYIISASED-----------SQVYVWKREEH 761 (969)
Q Consensus 699 ~~~l~sg-s~Dg~I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D-----------g~I~IWdl~t~ 761 (969)
..|+++ ..++.++||+.. ..........+...+..++|+|+|++|++++.+ +.|++||+.++
T Consensus 185 -~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 185 -RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp -SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred -CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 455544 468999999853 222222333445678899999999999988876 56999999873
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-17 Score=203.07 Aligned_cols=257 Identities=11% Similarity=0.151 Sum_probs=179.1
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
...+..|.+.|.+++|||||++||.++ ++.|++||+.+++...........+. .+.
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~-------------~g~---------- 199 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIG-------------NGI---------- 199 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEE-------------ESC----------
T ss_pred EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcccee-------------ccc----------
Confidence 345778889999999999999999988 56899999998876553221100000 000
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC---------------------------
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK--------------------------- 575 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg--------------------------- 575 (969)
... ........+.++.|+| +++|++++.|+
T Consensus 200 ------~~~----------------v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 200 ------AEF----------------VADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp ------CCH----------------HHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred ------cce----------------eeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 000 0001123356789999 78888887765
Q ss_pred ------cEEEEECCC-CcEEEEe---ecCCCeEEEEEecCCCCEEEEEEC-----CCeEEEEeCCCceEEEEecCCC---
Q 002086 576 ------TVRLWDMET-KSCLKLF---AHNDYVTCIQFNPMDDDYFISGSL-----DAKVRIWSISDRLVVDWTDLHE--- 637 (969)
Q Consensus 576 ------tV~IWDl~t-~~~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~-----Dg~I~IWDl~~~~~~~~~~~~~--- 637 (969)
.|++||+.+ ++..... .|...+..++| | ++++|++++. +..|++||+.+++.........
T Consensus 258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW 335 (741)
T ss_dssp SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc
Confidence 899999998 8876654 47788999999 9 9998887654 5679999999987765544322
Q ss_pred --CEEEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeeeeeeeecccccCCCCCeEEE-EEcCCCCceEEEEeCCC--cE
Q 002086 638 --MVTAACYTPDGQNALIGSHKGSCRLYSIED-SKLHQLNQVDFQTKKKSSTRKITGF-QFSPSNPSEVLVTSADS--RI 711 (969)
Q Consensus 638 --~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~~~~~~~~~~~~~~~~~h~~~It~l-~fspd~~~~l~sgs~Dg--~I 711 (969)
.+..++|+|+|++++++..+|.++||.+.. +. ... ...+...+..+ .|+|++..++++++.++ .+
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~--------l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~ 406 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA--------LTHGNWSVDELLAVDEKAGLAYFRAGIESARES 406 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE--------SCCSSSCEEEEEEEETTTTEEEEEECSSCTTCB
T ss_pred CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee--------eeecceEEEeEeEEeCCCCEEEEEEeCCCCceE
Confidence 346899999999888999999888887652 22 111 13456678777 59999854555666666 88
Q ss_pred EEEeCCc---ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEcCC
Q 002086 712 RILDGLD---IVHKFRGFRNTSSQISAAFNADGKYIISASED----SQVYVWKREE 760 (969)
Q Consensus 712 ~IwD~~~---~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D----g~I~IWdl~t 760 (969)
+||+... ....+. ....+..++|+|||++|+....+ ..+++|+...
T Consensus 407 ~l~~~~~~g~~~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 407 QIYAVPLQGGQPQRLS---KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEEEEETTCCCCEECC---CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred EEEEEEcCCCCeeecc---cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 9998432 122222 24567899999999998876554 4689998764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-17 Score=178.52 Aligned_cols=273 Identities=10% Similarity=-0.019 Sum_probs=192.2
Q ss_pred CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecC
Q 002086 464 RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLS 543 (969)
Q Consensus 464 ~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 543 (969)
++|++++.++.|.+||+.+++.+..+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~---------------------------------------------------- 29 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI---------------------------------------------------- 29 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC----------------------------------------------------
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc----------------------------------------------------
Confidence 4799999999999999998877653210
Q ss_pred CCceeEeccCCC-CEEEEEecC-CcE-EEEEeCCCcEEEEECCCCcEEEEeecCC------CeEEEEEecCCCCEEEEEE
Q 002086 544 EKPFCSFIGHLD-DVLDLSWSR-SHL-LLSSSMDKTVRLWDMETKSCLKLFAHND------YVTCIQFNPMDDDYFISGS 614 (969)
Q Consensus 544 ~k~~~~l~gH~~-~I~~l~fs~-~~~-L~Sgs~DgtV~IWDl~t~~~i~~~~h~~------~V~sv~fsp~~~~~L~sgs 614 (969)
++.. .+..++|+| ++. ++++..++.|.+||+.+++.+..+.... .+.+++|+| ++++|+++.
T Consensus 30 --------~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~ 100 (337)
T 1pby_B 30 --------ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYE 100 (337)
T ss_dssp --------TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEE
T ss_pred --------CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEe
Confidence 1111 356789998 545 4566678999999999999887774333 788999999 888888886
Q ss_pred ------------CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 615 ------------LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 615 ------------~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
.++.|.+||+.+++..........+..++|+|+|++|+++ ++.|++||+.+++.......
T Consensus 101 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~------ 172 (337)
T 1pby_B 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPI------ 172 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECS------
T ss_pred cccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeec------
Confidence 6799999999998887776666778899999999988888 68999999998876533211
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCC-----------------------cEEEEeCCcceE-EEEeecCCCCeEEEEEe
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADS-----------------------RIRILDGLDIVH-KFRGFRNTSSQISAAFN 738 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg-----------------------~I~IwD~~~~~~-~~~~~~~~~~V~sl~fs 738 (969)
......+ .|+|++..+++++..++ .|.+||...... ......+...+.+++|+
T Consensus 173 ~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s 249 (337)
T 1pby_B 173 QSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249 (337)
T ss_dssp TTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred cccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEEC
Confidence 1111222 67888743333333333 468999765433 23333445567889999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCc
Q 002086 739 ADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPT 818 (969)
Q Consensus 739 pdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~ 818 (969)
|||++|+++ ++.|++||+.++ +........ ..+.
T Consensus 250 ~dg~~l~~~--~~~v~~~d~~~~------~~~~~~~~~--------------------------------------~~~~ 283 (337)
T 1pby_B 250 PAKTRAFGA--YNVLESFDLEKN------ASIKRVPLP--------------------------------------HSYY 283 (337)
T ss_dssp TTSSEEEEE--ESEEEEEETTTT------EEEEEEECS--------------------------------------SCCC
T ss_pred CCCCEEEEe--CCeEEEEECCCC------cCcceecCC--------------------------------------Ccee
Confidence 999999988 789999999873 211111000 1122
Q ss_pred ccccCCCCCCccccCCCCccccCCCCCCccccCCCC
Q 002086 819 SATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSP 854 (969)
Q Consensus 819 ~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~ 854 (969)
..+++|++.+++..+.+..+..|...++.....+..
T Consensus 284 ~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred eEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 345688888777777788899998777765554433
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.5e-16 Score=171.16 Aligned_cols=250 Identities=10% Similarity=0.089 Sum_probs=182.4
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
++.+++....+.. ...+.+++|+|+|++| +++..++.|.+||..+++.+..+.......
T Consensus 75 d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------------- 134 (353)
T 3vgz_A 75 DPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR------------------- 134 (353)
T ss_dssp CTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC-------------------
T ss_pred cCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc-------------------
Confidence 5555666666654 3457899999999955 455568999999999988766433110000
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe--CCCcEEEEECCCCcEEEEee
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS--MDKTVRLWDMETKSCLKLFA 592 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs--~DgtV~IWDl~t~~~i~~~~ 592 (969)
.-......+.++.|+| ++++++++ .++.|.+||+.+++.+..+.
T Consensus 135 ---------------------------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~ 181 (353)
T 3vgz_A 135 ---------------------------------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ 181 (353)
T ss_dssp ---------------------------------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred ---------------------------------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence 0000112367899998 67666665 58899999999999998886
Q ss_pred -cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-----CCCEEEEEEccCCCEEEEEeC-CCcEEEEEc
Q 002086 593 -HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-----HEMVTAACYTPDGQNALIGSH-KGSCRLYSI 665 (969)
Q Consensus 593 -h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-----~~~V~sv~fspdg~~Lasgs~-dg~I~IwDl 665 (969)
+...+.+++|+| ++++|++++.++.|.+||+.+++....... ...+..++|+|+++++++++. ++.|.+||+
T Consensus 182 ~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 260 (353)
T 3vgz_A 182 NTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT 260 (353)
T ss_dssp CCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred CCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 667799999999 999999999999999999999987765443 456888999999998877665 489999999
Q ss_pred CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEE
Q 002086 666 EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYII 745 (969)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~La 745 (969)
.+++....... . ....++|+|++..++++...++.|.+||.......... .....+.+++|+|||++|+
T Consensus 261 ~~~~~~~~~~~-------~---~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~ 329 (353)
T 3vgz_A 261 RNGNILAKVAA-------P---ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF-DTPTHPNSLALSADGKTLY 329 (353)
T ss_dssp TTCCEEEEEEC-------S---SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-ECCSEEEEEEECTTSCEEE
T ss_pred CCCcEEEEEEc-------C---CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE-ecCCCCCeEEEcCCCCEEE
Confidence 98876544321 1 12468999998545555557999999997655433322 2344678999999999887
Q ss_pred EEeCCC
Q 002086 746 SASEDS 751 (969)
Q Consensus 746 Sgs~Dg 751 (969)
.+..++
T Consensus 330 v~~~~~ 335 (353)
T 3vgz_A 330 VSVKQK 335 (353)
T ss_dssp EEEECC
T ss_pred EEEccc
Confidence 777664
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-15 Score=169.52 Aligned_cols=245 Identities=12% Similarity=0.194 Sum_probs=169.9
Q ss_pred cccCEEEEEEeCCCCEEEEEeCC----CcEEEEeccc--ceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 450 HEGSIWTIKFSLDARFLASAGED----RVIHVWEVQE--CEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~D----gtVrIWDl~t--g~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
|...+..++|+|||++|++++.+ +.|.+|++.. ++....
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~----------------------------------- 92 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL----------------------------------- 92 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE-----------------------------------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe-----------------------------------
Confidence 77888999999999999999886 7999999875 333211
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEe-CCCcEEEEECCCCcEEE----Eeec-----
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSS-MDKTVRLWDMETKSCLK----LFAH----- 593 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs-~DgtV~IWDl~t~~~i~----~~~h----- 593 (969)
.....+......+++ .+++|++++ .++.|.+|++.....+. ...+
T Consensus 93 ------------------------~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~ 147 (361)
T 3scy_A 93 ------------------------NTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP 147 (361)
T ss_dssp ------------------------EEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS
T ss_pred ------------------------eEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC
Confidence 122234456677777 666666665 68899999997543221 1122
Q ss_pred ------CCCeEEEEEecCCCCEEEEEE-CCCeEEEEeCCCce-------E-------EEEecCCCCEEEEEEccCCCEEE
Q 002086 594 ------NDYVTCIQFNPMDDDYFISGS-LDAKVRIWSISDRL-------V-------VDWTDLHEMVTAACYTPDGQNAL 652 (969)
Q Consensus 594 ------~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IWDl~~~~-------~-------~~~~~~~~~V~sv~fspdg~~La 652 (969)
...+.+++|+| ++++|++++ .++.|.+|++.... + .........+..++|+|+|++++
T Consensus 148 ~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 148 DKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp CTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEE
Confidence 23458899999 888666555 58899999887432 1 22334456688999999999888
Q ss_pred EEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC--CCcEEEEeCC--c-ceEEEEee
Q 002086 653 IGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA--DSRIRILDGL--D-IVHKFRGF 726 (969)
Q Consensus 653 sgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~--Dg~I~IwD~~--~-~~~~~~~~ 726 (969)
+++ .++.|.+|++.++.+.....+. ....+......++|+|++ ++|+++.. ++.|.+|+.. . ........
T Consensus 227 v~~~~~~~v~v~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~ 302 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLDEIQTVA---ADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQ 302 (361)
T ss_dssp EEETTTCEEEEEEEETTEEEEEEEEE---SCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred EEcCCCCeEEEEEecCCceEEeEEEe---cCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe
Confidence 777 6899999999877653332221 112344567899999999 56655554 5899999964 1 22222222
Q ss_pred cCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcC
Q 002086 727 RNTSSQISAAFNADGKYIISAS-EDSQVYVWKRE 759 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~ 759 (969)
.....+..++|+|||++|++++ .++.|.+|+++
T Consensus 303 ~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 303 LTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp ECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred cCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2244577899999999998888 57899997765
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-17 Score=198.70 Aligned_cols=258 Identities=8% Similarity=0.038 Sum_probs=180.9
Q ss_pred ccccccceeeeEeccccc---CEEEEEEeCCCCEEEEEeCC---------CcEEEEecccceEEEeecCCccCccccccc
Q 002086 435 YKDLSALHLCQEIQAHEG---SIWTIKFSLDARFLASAGED---------RVIHVWEVQECEVMSMSEGNLTPIHPSLCN 502 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~---~I~~l~fSpDg~~LaTgs~D---------gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~ 502 (969)
++++.+.+....+.+|.. .|.+++|||||++|++++.+ +.|.+||+.+++.... .
T Consensus 41 ~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l-~------------ 107 (723)
T 1xfd_A 41 LWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL-D------------ 107 (723)
T ss_dssp EBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC-C------------
T ss_pred EEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEec-c------------
Confidence 346666666677777776 49999999999999999875 7788999987654211 0
Q ss_pred CCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEE
Q 002086 503 SSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWD 581 (969)
Q Consensus 503 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWD 581 (969)
...+|...+..++|+| ++.|++++. +.|++||
T Consensus 108 ----------------------------------------------~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 108 ----------------------------------------------PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp ----------------------------------------------CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ----------------------------------------------CCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 1123555677899999 778888876 7999999
Q ss_pred CCCCcEEEEee-cCCC------------------eEEEEEecCCCCEEEEEECCC-------------------------
Q 002086 582 METKSCLKLFA-HNDY------------------VTCIQFNPMDDDYFISGSLDA------------------------- 617 (969)
Q Consensus 582 l~t~~~i~~~~-h~~~------------------V~sv~fsp~~~~~L~sgs~Dg------------------------- 617 (969)
+.+++...... +... +.+++|+| ++++|++++.|+
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 99988776652 3333 37899999 999999887653
Q ss_pred ---------eEEEEeCCCceE-EEEecC------CCCEEEEEEccCCCEEEEEeC----CCcEEEEEcCCCceeeeeeee
Q 002086 618 ---------KVRIWSISDRLV-VDWTDL------HEMVTAACYTPDGQNALIGSH----KGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 618 ---------~I~IWDl~~~~~-~~~~~~------~~~V~sv~fspdg~~Lasgs~----dg~I~IwDl~~~~~~~~~~~~ 677 (969)
.|++||+.+++. ..+..+ ...+..++|+|||++|++... +..|++||+.+++.......
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~- 298 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED- 298 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe-
Confidence 799999998874 444333 456899999999998877653 35799999998876443211
Q ss_pred ecccccCCCCCe----EEEEEcCCCCceEEE-EeCCC------cEEEEe-CCcce--EEEEeecCCCCeEE-EEEeCCCC
Q 002086 678 FQTKKKSSTRKI----TGFQFSPSNPSEVLV-TSADS------RIRILD-GLDIV--HKFRGFRNTSSQIS-AAFNADGK 742 (969)
Q Consensus 678 ~~~~~~~h~~~I----t~l~fspd~~~~l~s-gs~Dg------~I~IwD-~~~~~--~~~~~~~~~~~V~s-l~fspdg~ 742 (969)
.+...+ ..++|+|++..++++ +..++ .|++|| ..... .......+...+.. ++|+|||+
T Consensus 299 ------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~ 372 (723)
T 1xfd_A 299 ------ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN 372 (723)
T ss_dssp ------ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT
T ss_pred ------ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC
Confidence 112222 367899999545544 55666 577787 22221 01111122333444 69999999
Q ss_pred EEEEEeCC---CcEEEEEcCC
Q 002086 743 YIISASED---SQVYVWKREE 760 (969)
Q Consensus 743 ~LaSgs~D---g~I~IWdl~t 760 (969)
+|+..+.+ +.++||++..
T Consensus 373 ~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 373 KIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp EEEEEESSSCTTCCEEEEECS
T ss_pred EEEEEEcCCCCcceEEEEEeC
Confidence 99876655 7899999874
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-17 Score=195.83 Aligned_cols=232 Identities=12% Similarity=0.092 Sum_probs=171.5
Q ss_pred cccCEEEEEEeCCCCEEEEEeC-CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGE-DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~-DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
+..+|++++|+|||++||+++. ||+++||++.+++...
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~----------------------------------------- 58 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK----------------------------------------- 58 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-----------------------------------------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-----------------------------------------
Confidence 3567999999999999999887 9999999986655432
Q ss_pred CCCcccccceeeecCCCceeEeccCC-CCEEEEEecCCcEEEEEeC---CCcEEEEECCC---CcEEEEeecCCCeEEEE
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHL-DDVLDLSWSRSHLLLSSSM---DKTVRLWDMET---KSCLKLFAHNDYVTCIQ 601 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~-~~I~~l~fs~~~~L~Sgs~---DgtV~IWDl~t---~~~i~~~~h~~~V~sv~ 601 (969)
+..|. ..+..+.|+|++++++++. +....||.+.. +... .+.....+...+
T Consensus 59 ---------------------lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~ 116 (582)
T 3o4h_A 59 ---------------------LNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILS 116 (582)
T ss_dssp ---------------------CCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEE
T ss_pred ---------------------eecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeee
Confidence 22233 5788999999866776665 45556655432 2222 333333455678
Q ss_pred EecCCCC-EEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC----CcEEEEEcCCCceeeeeee
Q 002086 602 FNPMDDD-YFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK----GSCRLYSIEDSKLHQLNQV 676 (969)
Q Consensus 602 fsp~~~~-~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d----g~I~IwDl~~~~~~~~~~~ 676 (969)
|+| +++ .+++.+.++.+.+||+.+++...+..+.. .+++|+|||++|++++.+ +.|++||+.+++....
T Consensus 117 ~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l--- 190 (582)
T 3o4h_A 117 GVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF--- 190 (582)
T ss_dssp EEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE---
T ss_pred eCC-CCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe---
Confidence 888 554 44444555556699999998777665555 789999999999988776 7899999988875422
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCC--cEEEEeCCcceEEEEeecCCCCeEEEE--------EeCCCCEEEE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS--RIRILDGLDIVHKFRGFRNTSSQISAA--------FNADGKYIIS 746 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg--~I~IwD~~~~~~~~~~~~~~~~V~sl~--------fspdg~~LaS 746 (969)
..+...+..++|+||| +.|+++..++ .|++||....... ....+...+..+. |+|||.++++
T Consensus 191 ------~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~ 262 (582)
T 3o4h_A 191 ------DSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVV 262 (582)
T ss_dssp ------CCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEE
T ss_pred ------ecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEE
Confidence 4566778999999999 6777888888 8999997654444 3333444455556 9999999999
Q ss_pred EeCCCcEEEEEc
Q 002086 747 ASEDSQVYVWKR 758 (969)
Q Consensus 747 gs~Dg~I~IWdl 758 (969)
++.|+.++||++
T Consensus 263 ~~~~g~~~l~~~ 274 (582)
T 3o4h_A 263 ARREGRSAVFID 274 (582)
T ss_dssp EEETTEEEEEET
T ss_pred EEcCCcEEEEEE
Confidence 999999999999
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-17 Score=199.94 Aligned_cols=197 Identities=13% Similarity=0.136 Sum_probs=151.2
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-----c
Q 002086 553 HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-----R 627 (969)
Q Consensus 553 H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-----~ 627 (969)
+...|.+++|+|+..++.+ .++.|++||+.+++......+...+.+++|+| ++++|+++ .|+.|++||+.+ +
T Consensus 80 ~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 80 DAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp --CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cccCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCC
Confidence 3467899999997655555 46999999999998888888888899999999 99999885 689999999998 7
Q ss_pred eEEEEecCCCC---------------EEEEEEccCCCEEEEEe---------------------------------CCCc
Q 002086 628 LVVDWTDLHEM---------------VTAACYTPDGQNALIGS---------------------------------HKGS 659 (969)
Q Consensus 628 ~~~~~~~~~~~---------------V~sv~fspdg~~Lasgs---------------------------------~dg~ 659 (969)
+.......... +.+++|+|||++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 76665443332 48899999999999987 4468
Q ss_pred EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC-----cEEEEeCCcc-e-EEEEeecCCC--
Q 002086 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS-----RIRILDGLDI-V-HKFRGFRNTS-- 730 (969)
Q Consensus 660 I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg-----~I~IwD~~~~-~-~~~~~~~~~~-- 730 (969)
|++||+.+++...... ...+...+..++|+|++ ..|++++.++ .|++||..+. . ..+.......
T Consensus 237 l~~~d~~~~~~~~~~~------~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQT------GEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp EEEEETTTTEEEECCC------CSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred EEEEECCCCceEeecc------CCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 9999999887543211 12456779999999998 6777776665 8999997654 2 2222222222
Q ss_pred -CeEEEEEeC--CCCEEEEEeCCCcEEEEEcC
Q 002086 731 -SQISAAFNA--DGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 731 -~V~sl~fsp--dg~~LaSgs~Dg~I~IWdl~ 759 (969)
.+..+.|+| ||++|++++.|+.++||.++
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred CccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 235689999 99999999999999999886
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.9e-17 Score=187.28 Aligned_cols=260 Identities=13% Similarity=0.172 Sum_probs=171.8
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
+...+..|++++++.+|++++.|+ |+||+........... ...
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---------------------~~~--------------- 77 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---------------------DDP--------------- 77 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---------------------CCT---------------
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---------------------cCc---------------
Confidence 345689999999999999999998 8999875321100000 000
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE----EEeCCCcEEEEECCCC--------cE---EEEe-e
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL----SSSMDKTVRLWDMETK--------SC---LKLF-A 592 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~----Sgs~DgtV~IWDl~t~--------~~---i~~~-~ 592 (969)
..+. ...+. ....|...|.+++|++ +++|+ +|+.|++|+|||+.++ +. +..+ +
T Consensus 78 -------~~~~--~~~~~-~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 147 (434)
T 2oit_A 78 -------NKIV--DKVQG-LLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD 147 (434)
T ss_dssp -------TCEE--ECCCC-EEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS
T ss_pred -------cccc--ccCcc-ccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC
Confidence 0000 00011 1124678899999999 78888 7889999999998754 22 2333 6
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
|...|.+++|+|..+.+|++++.||+|++||++++... ....|...|.+++|+|+|++|++|+.||.|++||++ ++..
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK 226 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence 89999999999944889999999999999999987544 455677899999999999999999999999999998 3332
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEE-EeCCCc------EEEEeCCcc----eEEEEee--------cCCCCe
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV-TSADSR------IRILDGLDI----VHKFRGF--------RNTSSQ 732 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s-gs~Dg~------I~IwD~~~~----~~~~~~~--------~~~~~V 732 (969)
....... .....|...|.++.|++++ .++++ ...+|. +++|++.+. ...+..+ ......
T Consensus 227 ~~~~~~~-~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 304 (434)
T 2oit_A 227 KVIPCPP-FYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHH 304 (434)
T ss_dssp EEECCCT-TCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCC
T ss_pred ccccCCc-ccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcc
Confidence 2211110 0001234589999999976 34433 344433 899996643 1222221 111222
Q ss_pred EEEEEeCCCCEEEEEeC-CCcEEEEEcC
Q 002086 733 ISAAFNADGKYIISASE-DSQVYVWKRE 759 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~-Dg~I~IWdl~ 759 (969)
..+.+-++.+++++++. .+.|.|....
T Consensus 305 ~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 305 YYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp EEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred eeeehhccCCEEEEecCCCCceeEEEec
Confidence 23344477777766655 4446666644
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=176.87 Aligned_cols=238 Identities=11% Similarity=-0.003 Sum_probs=171.5
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccc
Q 002086 456 TIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHV 535 (969)
Q Consensus 456 ~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 535 (969)
++++++++.++++++.++.|++||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------------------------------------------- 39 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------------------------------------------- 39 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--------------------------------------------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--------------------------------------------
Confidence 456788899999999999999999998877653221
Q ss_pred cceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEeec-------CCCeEEEEEecCC
Q 002086 536 PETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLFAH-------NDYVTCIQFNPMD 606 (969)
Q Consensus 536 ~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~~h-------~~~V~sv~fsp~~ 606 (969)
+....+..++|+| ++++ +++..++.|.+||+.+++.+..+.. ...+.+++|+| +
T Consensus 40 ----------------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp-d 102 (349)
T 1jmx_B 40 ----------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-D 102 (349)
T ss_dssp ----------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-T
T ss_pred ----------------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-C
Confidence 0111355788998 5544 5566789999999999998877643 23388999999 8
Q ss_pred CCEEEEEECC------------CeEEEEeCCCce---EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 607 DDYFISGSLD------------AKVRIWSISDRL---VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 607 ~~~L~sgs~D------------g~I~IWDl~~~~---~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
+++|++++.+ +.|.+||+.+++ .+....+...+.+++|+|+|+ +++++ +.|.+||+.+++..
T Consensus 103 g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 103 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYT 179 (349)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEE
T ss_pred CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCcee
Confidence 9999988865 899999998743 333444555688999999999 66554 34999999888765
Q ss_pred eeeeeeec------------------------c------c------------------------------ccCCCCCeEE
Q 002086 672 QLNQVDFQ------------------------T------K------------------------------KKSSTRKITG 691 (969)
Q Consensus 672 ~~~~~~~~------------------------~------~------------------------------~~~h~~~It~ 691 (969)
........ . . .......+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
T 1jmx_B 180 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 259 (349)
T ss_dssp EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCccee
Confidence 43221100 0 0 0001224567
Q ss_pred EEEcC-CCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 692 FQFSP-SNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 692 l~fsp-d~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++|+| ++ .+++++ ++.|++||..+........ ....+.+++|+|||++|++++.++.|++||+.+.
T Consensus 260 ~~~sp~dg-~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 260 GLRSPKDP-NQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEECSSCT-TEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred eEecCCCC-CEEEEE--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 88889 87 566666 8899999987654322222 2334678999999999999888999999999874
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-16 Score=180.23 Aligned_cols=169 Identities=11% Similarity=0.078 Sum_probs=129.0
Q ss_pred ccccCEEEEEEeCCCCEEE----EEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccC
Q 002086 449 AHEGSIWTIKFSLDARFLA----SAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKK 524 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~La----Tgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 524 (969)
.|.+.|++++|+|+|++|| +|+.|++|+|||+.++.. +.....
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~-----~~~~~~---------------------------- 136 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSN-----EAKQQK---------------------------- 136 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHC-----TTCSSC----------------------------
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccccc-----CCcCCc----------------------------
Confidence 3678999999999999999 888999999999875310 000000
Q ss_pred CCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEE-eecCCCeEEEE
Q 002086 525 GKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKL-FAHNDYVTCIQ 601 (969)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~-~~h~~~V~sv~ 601 (969)
.....+..+.+|...|.+++|+| +.+|++++.||+|++||++++..+.. .+|...|.+++
T Consensus 137 -----------------~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~ 199 (434)
T 2oit_A 137 -----------------RPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVC 199 (434)
T ss_dssp -----------------CCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEE
T ss_pred -----------------ceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEE
Confidence 00001234567999999999998 57999999999999999999876543 47899999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-------CCCEEEEEEccCCCEEEE-EeCCC------cEEEEEcCC
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-------HEMVTAACYTPDGQNALI-GSHKG------SCRLYSIED 667 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-------~~~V~sv~fspdg~~Las-gs~dg------~I~IwDl~~ 667 (969)
|+| ++.+|++|+.||+|++||++......+..+ ...|.+++|++++.++++ ...+| .+++|++..
T Consensus 200 wsp-dg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 200 WSP-KGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp ECT-TSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EcC-CCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 999 899999999999999999983333333222 227999999998877765 33443 389999986
Q ss_pred C
Q 002086 668 S 668 (969)
Q Consensus 668 ~ 668 (969)
.
T Consensus 279 ~ 279 (434)
T 2oit_A 279 K 279 (434)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-17 Score=199.54 Aligned_cols=238 Identities=13% Similarity=0.075 Sum_probs=168.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
.+.+++|+|||+++++ +.||+|++||+.+++....+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~------------------------------------------- 53 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI------------------------------------------- 53 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-------------------------------------------
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-------------------------------------------
Confidence 4678999999998877 78999999999987654422
Q ss_pred ccccceeeecCCCceeEeccCCC---CEEEEEecC-CcEEEEEeCC---------CcEEEEECCCCcEEEEe---ecCCC
Q 002086 533 VHVPETVFSLSEKPFCSFIGHLD---DVLDLSWSR-SHLLLSSSMD---------KTVRLWDMETKSCLKLF---AHNDY 596 (969)
Q Consensus 533 ~~~~~~v~~~~~k~~~~l~gH~~---~I~~l~fs~-~~~L~Sgs~D---------gtV~IWDl~t~~~i~~~---~h~~~ 596 (969)
.+|.. .|.+++|+| +++|++++.+ +.|++||+.++++.... .|...
T Consensus 54 ------------------~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~ 115 (723)
T 1xfd_A 54 ------------------EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAK 115 (723)
T ss_dssp ------------------CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCC
T ss_pred ------------------ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccc
Confidence 22332 478999999 7889998775 78889999999874333 34455
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-CCC------------------EEEEEEccCCCEEEEEeCC
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-HEM------------------VTAACYTPDGQNALIGSHK 657 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-~~~------------------V~sv~fspdg~~Lasgs~d 657 (969)
+..++|+| ++++|+.++. +.|++||+.+++...+... ... +.+++|+|||++|++++.+
T Consensus 116 ~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 116 LQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (723)
T ss_dssp CSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred ccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence 89999999 9999999886 7999999998876665443 222 3789999999999988755
Q ss_pred C----------------------------------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 658 G----------------------------------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 658 g----------------------------------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
+ .|++||+.+++...... .......+...+..++|+|++ .+++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~--~~~~~~~~~~~~~~~~~SpDg-~~l~ 270 (723)
T 1xfd_A 194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM--PPDDPRMREYYITMVKWATST-KVAV 270 (723)
T ss_dssp CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC--CCCCGGGSSEEEEEEEESSSS-EEEE
T ss_pred CCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee--CCccCCCccceeEEEEEeCCC-eEEE
Confidence 3 78899998776422111 000112235678999999998 5665
Q ss_pred EEeC----CCcEEEEeCCcceEEEE-eecCCCCe----EEEEEeCCCCEEEE--EeCCC------cEEEEE
Q 002086 704 VTSA----DSRIRILDGLDIVHKFR-GFRNTSSQ----ISAAFNADGKYIIS--ASEDS------QVYVWK 757 (969)
Q Consensus 704 sgs~----Dg~I~IwD~~~~~~~~~-~~~~~~~V----~sl~fspdg~~LaS--gs~Dg------~I~IWd 757 (969)
+... +..|++||......... ...+...+ ..++|+|||++|+. +..++ .|++||
T Consensus 271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 5543 35799999765432221 11122222 27899999997775 45677 466777
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-16 Score=191.90 Aligned_cols=275 Identities=12% Similarity=0.104 Sum_probs=183.0
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 452 GSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
..|.+++|+|| ++|+.+. |+.|++||+.+++....... ...+....+.+..........
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~SpdG~~la~~~~------------------ 140 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDT-NEETASLDFSPVGDRVAYVRN------------------ 140 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECC-TTCCTTCEECTTSSEEEEEET------------------
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCC-cccccCCcCCCCCCEEEEEEC------------------
Confidence 57999999999 6555553 59999999999887654332 122333333333221111100
Q ss_pred cccccceeeecC------CCceeEeccCCC--------------CEEEEEecC-CcEEEEEe------------------
Q 002086 532 YVHVPETVFSLS------EKPFCSFIGHLD--------------DVLDLSWSR-SHLLLSSS------------------ 572 (969)
Q Consensus 532 ~~~~~~~v~~~~------~k~~~~l~gH~~--------------~I~~l~fs~-~~~L~Sgs------------------ 572 (969)
....++... ++.......+.. .+.++.|+| +++|++++
T Consensus 141 ---~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~ 217 (706)
T 2z3z_A 141 ---HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLE 217 (706)
T ss_dssp ---TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSS
T ss_pred ---CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCC
Confidence 011222222 122222222222 358899999 78899887
Q ss_pred ---------------CCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCCCCEEEEEECCC-----eEEEEeCCCc-e
Q 002086 573 ---------------MDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDDDYFISGSLDA-----KVRIWSISDR-L 628 (969)
Q Consensus 573 ---------------~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~Dg-----~I~IWDl~~~-~ 628 (969)
.+..|++||+.+++..... .|...+.+++|+| ++++|++++.++ .|++||+.++ .
T Consensus 218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~ 296 (706)
T 2z3z_A 218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRF 296 (706)
T ss_dssp CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCE
T ss_pred CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCce
Confidence 4578999999999876655 4678899999999 999999888775 8999999998 5
Q ss_pred EEEEec--CCC---CEEEEEEcc--CCCEEEEEeCCCcEEEEEcC-CCceeeeeeeeecccccCCCCCeEE-EEEcCCCC
Q 002086 629 VVDWTD--LHE---MVTAACYTP--DGQNALIGSHKGSCRLYSIE-DSKLHQLNQVDFQTKKKSSTRKITG-FQFSPSNP 699 (969)
Q Consensus 629 ~~~~~~--~~~---~V~sv~fsp--dg~~Lasgs~dg~I~IwDl~-~~~~~~~~~~~~~~~~~~h~~~It~-l~fspd~~ 699 (969)
...... ... .+..++|+| +|++++++..++.++||.+. ++..... ...+...+.. ++|+|++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~--------l~~~~~~v~~~~~~spdg~ 368 (706)
T 2z3z_A 297 VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ--------VTKGEWEVTNFAGFDPKGT 368 (706)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE--------CCCSSSCEEEEEEECTTSS
T ss_pred eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe--------cCCCCeEEEeeeEEcCCCC
Confidence 444332 222 246789999 99999999999999999876 3332221 1344556766 79999985
Q ss_pred ceEEEEeCCC----cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC----CcEEEEEcCCC
Q 002086 700 SEVLVTSADS----RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED----SQVYVWKREEH 761 (969)
Q Consensus 700 ~~l~sgs~Dg----~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D----g~I~IWdl~t~ 761 (969)
.+++++..++ .|+.||...... ....+...+.+++|+|||++|+..+.+ +.|++||+.++
T Consensus 369 ~l~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 369 RLYFESTEASPLERHFYCIDIKGGKT--KDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EEEEEESSSCTTCBEEEEEETTCCCC--EESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred EEEEEecCCCCceEEEEEEEcCCCCc--eeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 4555555555 677777654322 222345668899999999998877554 46999999874
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-14 Score=161.34 Aligned_cols=201 Identities=14% Similarity=0.156 Sum_probs=140.0
Q ss_pred CCCCEEEEEecC-CcEEEEEeC---CCcEEEEECCCCcEE--EE-eecCCCeEEEEEecCCCCEEEEEE-CCCeEEEEeC
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSM---DKTVRLWDMETKSCL--KL-FAHNDYVTCIQFNPMDDDYFISGS-LDAKVRIWSI 624 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~---DgtV~IWDl~t~~~i--~~-~~h~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IWDl 624 (969)
+...+..++|+| ++ |++++. ++.|.+||+.++... .. ..+...+..++|+| ++++|++++ .++.|.+|++
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEe
Confidence 445667899999 55 665554 689999999877643 33 35788899999999 899888887 7899999999
Q ss_pred C-Cce--EEEEecCC----------CCEEEEEEccCCCEEEEEeCCCcEEEEEcC-CCceeeeeeeeecccccCCCCCeE
Q 002086 625 S-DRL--VVDWTDLH----------EMVTAACYTPDGQNALIGSHKGSCRLYSIE-DSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 625 ~-~~~--~~~~~~~~----------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~-~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
. ++. .+...... ..+.+++|+|+|+++++...++.|.+|++. ++++....... ......+.
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-----~~~g~~p~ 190 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT-----MEAGFGPR 190 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE-----CCTTCCEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE-----cCCCCCCc
Confidence 6 333 22222221 248899999999966666678899999998 45443222111 12234678
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCc--ceE--EEEeecCC------CCeEEEEEeCCCCEE-EEEeCCCcEEEEEcC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLD--IVH--KFRGFRNT------SSQISAAFNADGKYI-ISASEDSQVYVWKRE 759 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~--~~~~~~~~------~~V~sl~fspdg~~L-aSgs~Dg~I~IWdl~ 759 (969)
.++|+|++..++++...++.|++|+... ... ........ ..+..++|+|||++| ++...++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999844555567789999998542 211 11111111 347889999999987 555668999999997
Q ss_pred C
Q 002086 760 E 760 (969)
Q Consensus 760 t 760 (969)
.
T Consensus 271 ~ 271 (347)
T 3hfq_A 271 A 271 (347)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=5e-15 Score=167.37 Aligned_cols=248 Identities=12% Similarity=0.065 Sum_probs=166.2
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecc-cceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQ-ECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~-tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
+...+..++|+|||++|++++.+ .|.+|++. ++++.....
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-------------------------------------- 78 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-------------------------------------- 78 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE--------------------------------------
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE--------------------------------------
Confidence 44578899999999999999988 99999997 666543211
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcE--EEEEe-------------CCCcEEEEECC-CCcEEEEe
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHL--LLSSS-------------MDKTVRLWDME-TKSCLKLF 591 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~--L~Sgs-------------~DgtV~IWDl~-t~~~i~~~ 591 (969)
...+ +.+.+++|+| +++ ++++. .++++.+|++. .++....+
T Consensus 79 ---------------------~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~ 136 (365)
T 1jof_A 79 ---------------------HPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV 136 (365)
T ss_dssp ---------------------EECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE
T ss_pred ---------------------eecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE
Confidence 0000 1122366777 552 44443 68999999997 46655433
Q ss_pred e-----cCCCeEEEEEecCCCCEEEEEEC-CCeEEEEeCC-CceEEE--Eec---CCCCEEEEEEccCCCEEEEEeC-CC
Q 002086 592 A-----HNDYVTCIQFNPMDDDYFISGSL-DAKVRIWSIS-DRLVVD--WTD---LHEMVTAACYTPDGQNALIGSH-KG 658 (969)
Q Consensus 592 ~-----h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl~-~~~~~~--~~~---~~~~V~sv~fspdg~~Lasgs~-dg 658 (969)
. +...+.+++|+| ++++|+++.. ++.|++||+. ++++.. ... +...+..++|+|+|+++++++. ++
T Consensus 137 ~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~ 215 (365)
T 1jof_A 137 QNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGN 215 (365)
T ss_dssp EEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred eeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCC
Confidence 2 567899999999 8988887664 6899999998 676432 221 2466899999999999988775 68
Q ss_pred cEEEEEcC--CCceee-eeeee-ecccccCCCC------CeEEEE-EcCCCCceEEEEeC-CC-----cEEEEeCC-cce
Q 002086 659 SCRLYSIE--DSKLHQ-LNQVD-FQTKKKSSTR------KITGFQ-FSPSNPSEVLVTSA-DS-----RIRILDGL-DIV 720 (969)
Q Consensus 659 ~I~IwDl~--~~~~~~-~~~~~-~~~~~~~h~~------~It~l~-fspd~~~~l~sgs~-Dg-----~I~IwD~~-~~~ 720 (969)
.|.+|++. ++++.. ...+. +.....++.. .+..++ |+|++ ++|+++.. +. .|.+|++. ...
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence 99999875 454321 01111 1000011222 588999 99998 56666543 33 89999964 222
Q ss_pred EE--EE-eecCCCCeEEEEEeC---CCCEEEEEeCC-CcEEEEEcCC
Q 002086 721 HK--FR-GFRNTSSQISAAFNA---DGKYIISASED-SQVYVWKREE 760 (969)
Q Consensus 721 ~~--~~-~~~~~~~V~sl~fsp---dg~~LaSgs~D-g~I~IWdl~t 760 (969)
.. .. ..........++|+| ||++|++++.+ +.|.||+++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 11 11 111233456789999 89999999875 8999999976
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-13 Score=148.15 Aligned_cols=246 Identities=7% Similarity=0.118 Sum_probs=176.7
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
.+|-..+.+|+++++|+++++...++.|.+||.. ++.+..+....
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~---------------------------------- 70 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG---------------------------------- 70 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS----------------------------------
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC----------------------------------
Confidence 4567789999999999999998889999999987 44433221000
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEec-CCcEEEEEe-C-CCcEEEEECCCCcEEEEee--cCCCeEEEEE
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS-RSHLLLSSS-M-DKTVRLWDMETKSCLKLFA--HNDYVTCIQF 602 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs-~~~~L~Sgs-~-DgtV~IWDl~t~~~i~~~~--h~~~V~sv~f 602 (969)
...+|...+.++++. ++..|+.+. . ++.|.+|| .+++.+..+. +...+.++++
T Consensus 71 ---------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~ 128 (286)
T 1q7f_A 71 ---------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV 128 (286)
T ss_dssp ---------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE
T ss_pred ---------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE
Confidence 001345567889994 544444444 3 89999999 6677777663 4467899999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT 680 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~ 680 (969)
++ +++++++...++.|.+||........+. .....+..++++++|+++++...++.|++||...... ....
T Consensus 129 ~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~-~~~~----- 201 (286)
T 1q7f_A 129 DN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL-RQIG----- 201 (286)
T ss_dssp CT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE-EEES-----
T ss_pred eC-CCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE-EEEc-----
Confidence 99 8888888778899999997654433332 2345689999999999877778899999999854322 1110
Q ss_pred cccCCCCCeEEEEEcCCCCceEEEEeCCC-cEEEEeCCc-ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 681 KKKSSTRKITGFQFSPSNPSEVLVTSADS-RIRILDGLD-IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 681 ~~~~h~~~It~l~fspd~~~~l~sgs~Dg-~I~IwD~~~-~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
..++...+..+++++++ .++++...++ .|.+||... ....+........+.+++++|+|+++++ +.|+.|++|++
T Consensus 202 -~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 202 -GEGITNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp -CTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred -cCCccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 12234678999999988 6777777775 999999543 3334443333345779999999987777 67999999998
Q ss_pred CC
Q 002086 759 EE 760 (969)
Q Consensus 759 ~t 760 (969)
..
T Consensus 279 ~~ 280 (286)
T 1q7f_A 279 VQ 280 (286)
T ss_dssp SC
T ss_pred cc
Confidence 75
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-15 Score=176.80 Aligned_cols=183 Identities=10% Similarity=0.056 Sum_probs=142.1
Q ss_pred EEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC----CeEEEEeCCCceEEEE
Q 002086 559 DLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD----AKVRIWSISDRLVVDW 632 (969)
Q Consensus 559 ~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D----g~I~IWDl~~~~~~~~ 632 (969)
..+|++ +..+++.+.++.+.+||+.++++.....+.. .+++|+| ++++|++++.+ +.|++||+.+++...+
T Consensus 114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l 190 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF 190 (582)
T ss_dssp EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEEE
T ss_pred eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceEe
Confidence 345555 4444555555555699999998877776555 8999999 99999988877 7899999999988888
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE--------EcCCCCceE
Q 002086 633 TDLHEMVTAACYTPDGQNALIGSHKG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ--------FSPSNPSEV 702 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs~dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~--------fspd~~~~l 702 (969)
..+...+..++|+|||+.|+++..++ .|++||+.+++.. .. ..+...+..+. |+|++ .++
T Consensus 191 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~spdg-~~~ 260 (582)
T 3o4h_A 191 DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL--------ELPSKDFSSYRPTAITWLGYLPDG-RLA 260 (582)
T ss_dssp CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC--------CCSCSHHHHHCCSEEEEEEECTTS-CEE
T ss_pred ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec--------cCCCcChhhhhhccccceeEcCCC-cEE
Confidence 88888899999999999999888888 8999999988764 21 33444455555 99999 899
Q ss_pred EEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc---EEEEEcCC
Q 002086 703 LVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ---VYVWKREE 760 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~---I~IWdl~t 760 (969)
++++.++.+++|+. ... .. .....+.+++|+ +++++++++.+.. |++|+..+
T Consensus 261 ~~~~~~g~~~l~~~--g~~-~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 261 VVARREGRSAVFID--GER-VE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEETTEEEEEET--TEE-EC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEcCCcEEEEEE--CCe-ec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999999999998 221 11 233568899999 9999999888754 77777653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=162.54 Aligned_cols=254 Identities=13% Similarity=0.104 Sum_probs=173.3
Q ss_pred ccccceeeeEecccccCEEE-----EEEeCCCCEEEEEeC-CCc--EEEEecccceEEEeecCCccCcccccccCCCCCc
Q 002086 437 DLSALHLCQEIQAHEGSIWT-----IKFSLDARFLASAGE-DRV--IHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKAS 508 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~-----l~fSpDg~~LaTgs~-Dgt--VrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~ 508 (969)
+..+...+..|..|.+.+.. .+|+|||++|+.++. ++. |.+||+.+++.....
T Consensus 16 ~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt------------------- 76 (388)
T 3pe7_A 16 DASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT------------------- 76 (388)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-------------------
T ss_pred cCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-------------------
Confidence 33445556677788877776 899999999999887 674 888888887765421
Q ss_pred cCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE
Q 002086 509 SLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC 587 (969)
Q Consensus 509 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~ 587 (969)
.+|...+..+.|+| ++.|+.++.++.|++||+.+++.
T Consensus 77 ------------------------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 77 ------------------------------------------EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp ------------------------------------------CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred ------------------------------------------eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 12333333467999 78999999999999999999998
Q ss_pred EEEee-cCCCeEEEE--EecCCCCEEEEE----------------------ECCCeEEEEeCCCceEEEEecCCCCEEEE
Q 002086 588 LKLFA-HNDYVTCIQ--FNPMDDDYFISG----------------------SLDAKVRIWSISDRLVVDWTDLHEMVTAA 642 (969)
Q Consensus 588 i~~~~-h~~~V~sv~--fsp~~~~~L~sg----------------------s~Dg~I~IWDl~~~~~~~~~~~~~~V~sv 642 (969)
...+. +...+.... +++ ++.+++.. ..+..|++||+.+++...+..+...+..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 193 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHP 193 (388)
T ss_dssp EEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEE
T ss_pred eeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcccccc
Confidence 77664 344444444 377 78877643 24478999999999888887777889999
Q ss_pred EEcc-CCCEEEEEeCC------CcEEEEEcCCCceeeeeeeeecccccCCC-CCeEEEEEcCCCCceEEEEeCCC----c
Q 002086 643 CYTP-DGQNALIGSHK------GSCRLYSIEDSKLHQLNQVDFQTKKKSST-RKITGFQFSPSNPSEVLVTSADS----R 710 (969)
Q Consensus 643 ~fsp-dg~~Lasgs~d------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~-~~It~l~fspd~~~~l~sgs~Dg----~ 710 (969)
+|+| +|+.|+..... ..|.++|+.+....... .... ..+..+.|+|++..+++++..++ .
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (388)
T 3pe7_A 194 IYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK--------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRF 265 (388)
T ss_dssp EEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC--------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEE
T ss_pred EECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee--------eCCCCcccccceECCCCCEEEEEecCCCCCcce
Confidence 9999 99999877753 37888888766543221 1111 35778899999944444444322 3
Q ss_pred EEEEeCCcceE-EEEeecCCCC----eEEEEEeCCCCEEEEE---------eCCCcEEEEEcCC
Q 002086 711 IRILDGLDIVH-KFRGFRNTSS----QISAAFNADGKYIISA---------SEDSQVYVWKREE 760 (969)
Q Consensus 711 I~IwD~~~~~~-~~~~~~~~~~----V~sl~fspdg~~LaSg---------s~Dg~I~IWdl~t 760 (969)
|++||...... .+........ ...+.|+|||++|+.. ..+..|++||+.+
T Consensus 266 l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 266 IYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp EEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred EEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 99999765432 2211111000 1123799999988854 4566899999987
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.8e-16 Score=189.16 Aligned_cols=241 Identities=10% Similarity=0.049 Sum_probs=164.6
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccc
Q 002086 456 TIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHV 535 (969)
Q Consensus 456 ~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 535 (969)
+++|+|||++++++ .|++|++||+.+++....+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~--------------------------------------------- 53 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILS--------------------------------------------- 53 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEEC---------------------------------------------
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEc---------------------------------------------
Confidence 78999999766654 69999999999877654221
Q ss_pred cceeeecCCCceeEeccCCC---CEEEEEecC-CcEEEEEeC---------CCcEEEEECCCCcEEEEeecCCCeEEEEE
Q 002086 536 PETVFSLSEKPFCSFIGHLD---DVLDLSWSR-SHLLLSSSM---------DKTVRLWDMETKSCLKLFAHNDYVTCIQF 602 (969)
Q Consensus 536 ~~~v~~~~~k~~~~l~gH~~---~I~~l~fs~-~~~L~Sgs~---------DgtV~IWDl~t~~~i~~~~h~~~V~sv~f 602 (969)
+|.. .|.+++|+| +++|++++. +++|++||+.+++.+........+..++|
T Consensus 54 ----------------~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~ 117 (719)
T 1z68_A 54 ----------------NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCW 117 (719)
T ss_dssp ----------------HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEE
T ss_pred ----------------cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceE
Confidence 2221 477899999 788888876 79999999999987321222467899999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEEecC--CCCE-----------------EEEEEccCCCEEEEEeCCC-----
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL--HEMV-----------------TAACYTPDGQNALIGSHKG----- 658 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~--~~~V-----------------~sv~fspdg~~Lasgs~dg----- 658 (969)
+| +++.|+.+. ++.|++||+.+++...+... ...| .+++|+|||++|++++.|.
T Consensus 118 SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~ 195 (719)
T 1z68_A 118 SP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPV 195 (719)
T ss_dssp CS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCE
T ss_pred CC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCce
Confidence 99 999999886 78999999998876654322 1222 4899999999999987652
Q ss_pred -----------------------------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-
Q 002086 659 -----------------------------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD- 708 (969)
Q Consensus 659 -----------------------------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D- 708 (969)
.|++||+.+++......+........+...+..++|+|++ .++++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~ 274 (719)
T 1z68_A 196 IAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRV 274 (719)
T ss_dssp EEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESS
T ss_pred EEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccc
Confidence 7889999877642001111111123577789999999996 666664332
Q ss_pred ---CcEEEEe----CCcceEEEEe----ecCCCCeE-----EEEEeCCCCEEEE--EeCCC--cEEEEEcCCC
Q 002086 709 ---SRIRILD----GLDIVHKFRG----FRNTSSQI-----SAAFNADGKYIIS--ASEDS--QVYVWKREEH 761 (969)
Q Consensus 709 ---g~I~IwD----~~~~~~~~~~----~~~~~~V~-----sl~fspdg~~LaS--gs~Dg--~I~IWdl~t~ 761 (969)
..|++|| .......... ..+...+. .+.|+|||+.|+. +..+| .|++|++.++
T Consensus 275 ~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 275 QNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp TTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred cCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 2488899 5443211111 12334444 7899999996544 54566 4666776653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=161.14 Aligned_cols=239 Identities=10% Similarity=0.034 Sum_probs=165.2
Q ss_pred EEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCC--CeEEEEEecCCCCEE-EEEECCCeEEEEeCCCceEEEEecC
Q 002086 560 LSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHND--YVTCIQFNPMDDDYF-ISGSLDAKVRIWSISDRLVVDWTDL 635 (969)
Q Consensus 560 l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~--~V~sv~fsp~~~~~L-~sgs~Dg~I~IWDl~~~~~~~~~~~ 635 (969)
+++++ +.++++++.+++|++||+.+++.+..+.... .+..++|+| +++++ +++..++.|.+||+.+++.......
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45666 6788999999999999999999988876544 788999999 77755 4555789999999999887765543
Q ss_pred CC-------CEEEEEEccCCCEEEEEeCC------------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 636 HE-------MVTAACYTPDGQNALIGSHK------------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 636 ~~-------~V~sv~fspdg~~Lasgs~d------------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.. .+..++|+|+|++|++++.+ +.|.+||+.+++....... ..+...+.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT------FPMPRQVYLMRAAD 157 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE------EECCSSCCCEEECT
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee------ccCCCcccceeECC
Confidence 22 27789999999999998865 8999999987553221111 11233588899999
Q ss_pred CCCceEEEEeCCCcEEEEeCCcceEEEEeecC------------------------------------------------
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIVHKFRGFRN------------------------------------------------ 728 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~------------------------------------------------ 728 (969)
++ . +++++ +.|++||.............
T Consensus 158 dg-~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 158 DG-S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp TS-C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CC-c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 98 4 55544 34999996543222111100
Q ss_pred --------------------CCCeEEEEEeC-CCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEE
Q 002086 729 --------------------TSSQISAAFNA-DGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSV 787 (969)
Q Consensus 729 --------------------~~~V~sl~fsp-dg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~ 787 (969)
...+..++|+| ||++|+++ ++.|++||+.++ +.......
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~------~~~~~~~~------------ 293 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR------KLIKAANL------------ 293 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT------EEEEEEEC------------
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC------eEEEEEcC------------
Confidence 11345677889 99998888 889999998873 21111100
Q ss_pred eecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCCCCccccCCCCC
Q 002086 788 AIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPP 855 (969)
Q Consensus 788 ~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~p 855 (969)
+..+...+++|++..++..+.+..+..|...++.....+..|
T Consensus 294 --------------------------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 294 --------------------------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp --------------------------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred --------------------------CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 011223456888888777777788999988777655554443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-15 Score=182.18 Aligned_cols=249 Identities=10% Similarity=0.094 Sum_probs=167.9
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 452 GSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
....++.|+|||++|+++ |++|++||+.+++....+.++..
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~------------------------------------- 57 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF------------------------------------- 57 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT-------------------------------------
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh-------------------------------------
Confidence 346689999999999986 99999999998876554332210
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC---------CcEEEEECCCCcEEEEeecCCCeEEEE
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---------KTVRLWDMETKSCLKLFAHNDYVTCIQ 601 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---------gtV~IWDl~t~~~i~~~~h~~~V~sv~ 601 (969)
..+......+.|+| +++|+.++.+ +.+.+||+.++++.....|...+..++
T Consensus 58 -------------------~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~ 118 (740)
T 4a5s_A 58 -------------------DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVT 118 (740)
T ss_dssp -------------------TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEE
T ss_pred -------------------hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeE
Confidence 01112234578899 7888888876 566799999999877667888999999
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--CCE-----------------EEEEEccCCCEEEEEeCCC----
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--EMV-----------------TAACYTPDGQNALIGSHKG---- 658 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--~~V-----------------~sv~fspdg~~Lasgs~dg---- 658 (969)
|+| +++.|+.+. |+.|++||+.++....+.... ..+ ..+.|+|||+.|+.++.|.
T Consensus 119 ~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~ 196 (740)
T 4a5s_A 119 WSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP 196 (740)
T ss_dssp ECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred ECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCc
Confidence 999 999998885 689999999988766543322 222 2489999999999875332
Q ss_pred --------------------------------cEEEEEcCC---CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 659 --------------------------------SCRLYSIED---SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 659 --------------------------------~I~IwDl~~---~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
.|++||+.+ ++......+........+...+..++|+|++ +.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~ 275 (740)
T 4a5s_A 197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISL 275 (740)
T ss_dssp EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEE
T ss_pred eEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEE
Confidence 467777776 5211111111111111366778999999998 5555
Q ss_pred EEeC----CCcEEEEeCCcce--------EEEEeecCCCCe-----EEEEEeCCCCEEE-EEeC-CC--cEEEEEcCCC
Q 002086 704 VTSA----DSRIRILDGLDIV--------HKFRGFRNTSSQ-----ISAAFNADGKYII-SASE-DS--QVYVWKREEH 761 (969)
Q Consensus 704 sgs~----Dg~I~IwD~~~~~--------~~~~~~~~~~~V-----~sl~fspdg~~La-Sgs~-Dg--~I~IWdl~t~ 761 (969)
.... +..|++||..... ..+....+...+ ....|+|||+.|+ ..+. +| .|++|++.++
T Consensus 276 ~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 276 QWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp EEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred EEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 4422 3469999954322 222112233333 3678999999877 6654 33 5888888764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=9e-14 Score=157.01 Aligned_cols=259 Identities=14% Similarity=0.078 Sum_probs=168.6
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
++...+..+...+|...+.++.|+|||++|+.++.++.|++||+.+++......
T Consensus 66 d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~-------------------------- 119 (388)
T 3pe7_A 66 DLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ-------------------------- 119 (388)
T ss_dssp ETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--------------------------
T ss_pred eCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee--------------------------
Confidence 455555666667777777788999999999999999999999999877654322
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEE--ecC-CcEEEE----------------------E
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLS--WSR-SHLLLS----------------------S 571 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~--fs~-~~~L~S----------------------g 571 (969)
.+...+.... +++ +.+++. .
T Consensus 120 -----------------------------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 120 -----------------------------------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp -----------------------------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred -----------------------------------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 1112222122 234 333332 2
Q ss_pred eCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC------CeEEEEeCCCceEEEEecCC--CCEEEEE
Q 002086 572 SMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD------AKVRIWSISDRLVVDWTDLH--EMVTAAC 643 (969)
Q Consensus 572 s~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D------g~I~IWDl~~~~~~~~~~~~--~~V~sv~ 643 (969)
..+..|.+||+.+++......+...+..++|+|.++..|+.+..+ ..|.++|+.++....+..+. ..+..++
T Consensus 165 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEF 244 (388)
T ss_dssp CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEE
T ss_pred CCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccce
Confidence 345789999999999888888888999999998556777766653 37888998887766666555 3578899
Q ss_pred EccCCCEEEEEeC-CC----cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE--------eCCCc
Q 002086 644 YTPDGQNALIGSH-KG----SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT--------SADSR 710 (969)
Q Consensus 644 fspdg~~Lasgs~-dg----~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg--------s~Dg~ 710 (969)
|+|+|+.|+..+. ++ .|++||+.+++............... ....+.|+|++..++++. ..+..
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 321 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMS---NYDGSLMVGDGSDAPVDVQDDSGYKIENDPF 321 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEE---CTTSSEEEEEECCC------------CCCCE
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeee---cCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence 9999997765443 22 39999999887543322210000000 011126899984444333 45678
Q ss_pred EEEEeCCcceE-EEEeecC---------CCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcC
Q 002086 711 IRILDGLDIVH-KFRGFRN---------TSSQISAAFNADGKYIISAS-EDSQVYVWKRE 759 (969)
Q Consensus 711 I~IwD~~~~~~-~~~~~~~---------~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~ 759 (969)
|++||...... .+..+.. ...+..++|+|||++|+..+ .+|...||.++
T Consensus 322 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 322 LYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 99999765332 2322221 00367889999999888666 46776666654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-13 Score=148.10 Aligned_cols=200 Identities=13% Similarity=0.078 Sum_probs=144.0
Q ss_pred cCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc-EEEEee----------cCCCeEEEEEecCCCCEEEEEE-CCCe
Q 002086 552 GHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS-CLKLFA----------HNDYVTCIQFNPMDDDYFISGS-LDAK 618 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~-~i~~~~----------h~~~V~sv~fsp~~~~~L~sgs-~Dg~ 618 (969)
++......+++++ ++++++...++.|++||..... .+..++ +......|+|+|.++.++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 3445788999998 7788888889999999987553 444442 3346899999985567777776 6899
Q ss_pred EEEEeCCCceEEEEecC-----------CCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC
Q 002086 619 VRIWSISDRLVVDWTDL-----------HEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST 686 (969)
Q Consensus 619 I~IWDl~~~~~~~~~~~-----------~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~ 686 (969)
|++||. ++..+..... ...+..++++|+ +.++++...++.|++|+..+++....... ..+.
T Consensus 168 I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~------~~~~ 240 (329)
T 3fvz_A 168 IVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH------ASFG 240 (329)
T ss_dssp EEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC------TTTT
T ss_pred EEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec------cccC
Confidence 999995 4554444321 134899999998 67777777889999999987776543221 3455
Q ss_pred CCeEEEEEcCCCCceEEEE-------eCCCcEEEEeCCcceEEEEe---ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 687 RKITGFQFSPSNPSEVLVT-------SADSRIRILDGLDIVHKFRG---FRNTSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 687 ~~It~l~fspd~~~~l~sg-------s~Dg~I~IwD~~~~~~~~~~---~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
..+..++|+| + ..+.+. ..+..|++|+.......... ..+......++++|+|.++++...++.|++|
T Consensus 241 ~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 241 RNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp TCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred CCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 6788999999 3 333333 23458999996654333222 2345568899999999888888899999999
Q ss_pred EcCC
Q 002086 757 KREE 760 (969)
Q Consensus 757 dl~t 760 (969)
++..
T Consensus 319 ~~~~ 322 (329)
T 3fvz_A 319 TLTE 322 (329)
T ss_dssp EEEE
T ss_pred eCCc
Confidence 9875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=176.73 Aligned_cols=255 Identities=9% Similarity=0.072 Sum_probs=171.8
Q ss_pred cccccceeeeEeccccc---CEEEEEEeCCCCEEEEEeC---------CCcEEEEecccceEEEeecCCccCcccccccC
Q 002086 436 KDLSALHLCQEIQAHEG---SIWTIKFSLDARFLASAGE---------DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNS 503 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~---~I~~l~fSpDg~~LaTgs~---------DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~ 503 (969)
+++...+....+.+|.. .|.+++|||||++||+++. |+.|++||+.+++.+...
T Consensus 41 ~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-------------- 106 (719)
T 1z68_A 41 YNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-------------- 106 (719)
T ss_dssp EESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS--------------
T ss_pred EEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce--------------
Confidence 35555556666666655 4999999999999999876 789999999987652100
Q ss_pred CCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEEC
Q 002086 504 SDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDM 582 (969)
Q Consensus 504 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl 582 (969)
.+ ...+..++|+| ++.|+.+. ++.|++||+
T Consensus 107 ---------------------------------------------~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~ 137 (719)
T 1z68_A 107 ---------------------------------------------EL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQR 137 (719)
T ss_dssp ---------------------------------------------CC---CSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred ---------------------------------------------ec---CcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence 00 12466799999 77888775 789999999
Q ss_pred CCCcEEEEe--ecCCCe-----------------EEEEEecCCCCEEEEEECCC--------------------------
Q 002086 583 ETKSCLKLF--AHNDYV-----------------TCIQFNPMDDDYFISGSLDA-------------------------- 617 (969)
Q Consensus 583 ~t~~~i~~~--~h~~~V-----------------~sv~fsp~~~~~L~sgs~Dg-------------------------- 617 (969)
.++++.... ++...| .+++|+| ++++|++++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 998876543 333322 4899999 999999988652
Q ss_pred --------eEEEEeCCCceEE---EE------ecCCCCEEEEEEccCCCEEEEEeCCC----cEEEEE----cCCCceee
Q 002086 618 --------KVRIWSISDRLVV---DW------TDLHEMVTAACYTPDGQNALIGSHKG----SCRLYS----IEDSKLHQ 672 (969)
Q Consensus 618 --------~I~IWDl~~~~~~---~~------~~~~~~V~sv~fspdg~~Lasgs~dg----~I~IwD----l~~~~~~~ 672 (969)
.|++||+.+++.. .+ ..+...+..++|+||++++++....+ .|.+|| +.+++...
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 7899999987642 22 23566789999999987777644332 488899 76665432
Q ss_pred eeeeeecccccCCCCCeE-----EEEEcCCCCceEE-EEeCCC--cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEE
Q 002086 673 LNQVDFQTKKKSSTRKIT-----GFQFSPSNPSEVL-VTSADS--RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYI 744 (969)
Q Consensus 673 ~~~~~~~~~~~~h~~~It-----~l~fspd~~~~l~-sgs~Dg--~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~L 744 (969)
... .....+...+. .+.|+|++..+++ +...++ .|++||...... .....+...+..+.++ +++.|
T Consensus 297 ~~~----~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i 370 (719)
T 1z68_A 297 TQE----HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSL 370 (719)
T ss_dssp GGE----EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEE
T ss_pred EEe----cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEE
Confidence 210 00013344444 7889999854444 344555 467777544321 1222234457777777 88887
Q ss_pred EEEeCC-----CcEEEEEcCC
Q 002086 745 ISASED-----SQVYVWKREE 760 (969)
Q Consensus 745 aSgs~D-----g~I~IWdl~t 760 (969)
+..+.+ +.++||.+..
T Consensus 371 ~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 371 FYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEecCCCCCceEEEEEEeC
Confidence 776665 8899998764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-12 Score=146.84 Aligned_cols=202 Identities=11% Similarity=0.100 Sum_probs=134.0
Q ss_pred CCCCEEEEEecC-CcEEEEEeCC----CcEEEEECCC--CcEEE--Ee-ecCCCeEEEEEecCCCCEEEEEE-CCCeEEE
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSMD----KTVRLWDMET--KSCLK--LF-AHNDYVTCIQFNPMDDDYFISGS-LDAKVRI 621 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~D----gtV~IWDl~t--~~~i~--~~-~h~~~V~sv~fsp~~~~~L~sgs-~Dg~I~I 621 (969)
+...+..++|+| +++|++++.+ +.|.+|++.. ++... .. .+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 556677799999 7888888876 8999998875 44332 22 24556777777 566666665 6889999
Q ss_pred EeCCCceEE----EEecC-----------CCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCce------eeeeeeeec
Q 002086 622 WSISDRLVV----DWTDL-----------HEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKL------HQLNQVDFQ 679 (969)
Q Consensus 622 WDl~~~~~~----~~~~~-----------~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~------~~~~~~~~~ 679 (969)
|++.....+ ....+ ...+.+++|+|+|++|++++ .++.|.+|++..... ..... ...
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~-~~~ 203 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG-TPE 203 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE-EEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc-ccc
Confidence 999753211 11111 12358899999999776655 588999999875441 11000 000
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCcceE--EEEe---ecCCCCeEEEEEeCCCCEEEEEeCC--C
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLDIVH--KFRG---FRNTSSQISAAFNADGKYIISASED--S 751 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~~~~--~~~~---~~~~~~V~sl~fspdg~~LaSgs~D--g 751 (969)
.........+..++|+|++ .++++++ .++.|.+|+...... .... ..+......++|+|||++|+++..+ +
T Consensus 204 ~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp EEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred ceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 0112344567899999998 5555555 789999999653221 1111 1122346789999999999776665 8
Q ss_pred cEEEEEcC
Q 002086 752 QVYVWKRE 759 (969)
Q Consensus 752 ~I~IWdl~ 759 (969)
.|.+|+++
T Consensus 283 ~i~v~~~~ 290 (361)
T 3scy_A 283 GVAIFKVD 290 (361)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEc
Confidence 99999996
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=7e-13 Score=150.02 Aligned_cols=264 Identities=9% Similarity=0.055 Sum_probs=176.9
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEe----------CCCcEEEEecccceEEEeecCCccCcccccccCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG----------EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDK 506 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs----------~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~ 506 (969)
|..+++++.++..+..+ .++|+|||++|+++. .+++|.+||..+++.+..+.....
T Consensus 37 D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~------------ 102 (361)
T 2oiz_A 37 DYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK------------ 102 (361)
T ss_dssp ETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT------------
T ss_pred ECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc------------
Confidence 55566667778877776 999999999999886 367899999998877664321000
Q ss_pred CccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC--CCcEEEEECC
Q 002086 507 ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM--DKTVRLWDME 583 (969)
Q Consensus 507 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~--DgtV~IWDl~ 583 (969)
. ..+......++++| +++|+++.. +++|.+||+.
T Consensus 103 ------------------------------------------~-~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~ 139 (361)
T 2oiz_A 103 ------------------------------------------R-VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA 139 (361)
T ss_dssp ------------------------------------------B-CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT
T ss_pred ------------------------------------------c-cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC
Confidence 0 00123345688998 788888764 6899999999
Q ss_pred CCcEEEE-eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEEEE------ecCCCCEEEEEEccCCCEEEEEe
Q 002086 584 TKSCLKL-FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVVDW------TDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 584 t~~~i~~-~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~------~~~~~~V~sv~fspdg~~Lasgs 655 (969)
+++.+.. +.+... ..+.+.|.....+++.+.||.+.+|++.. +++... +........+.+++++..++..+
T Consensus 140 ~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 218 (361)
T 2oiz_A 140 KGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVS 218 (361)
T ss_dssp TTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEB
T ss_pred CCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEe
Confidence 9999888 655433 33667774447889999999999999865 554411 11111122344567788888888
Q ss_pred CCCcEEEEEcCCCceeeeeeeeeccc----ccCCCCCeEEEEEcCCCCceEEEEe----------CCCcEEEEeCCcceE
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTK----KKSSTRKITGFQFSPSNPSEVLVTS----------ADSRIRILDGLDIVH 721 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~----~~~h~~~It~l~fspd~~~~l~sgs----------~Dg~I~IwD~~~~~~ 721 (969)
.++.|.++|+..........+..... ..........++|+|++...+++.. ....|.+||..+...
T Consensus 219 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~ 298 (361)
T 2oiz_A 219 YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR 298 (361)
T ss_dssp TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE
T ss_pred CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE
Confidence 89999999997655332221111100 0000111123689999854444443 135799999876654
Q ss_pred EEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 722 KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 722 ~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
......+. ...++|+|||++|++++. +.|.+||..++
T Consensus 299 v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 299 VARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 44433333 889999999999999887 99999999884
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.4e-12 Score=139.63 Aligned_cols=245 Identities=9% Similarity=0.048 Sum_probs=167.9
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
....+.+|...+.+++|+++|++++++..++.|.+||..+++....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~---------------------------------- 81 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP---------------------------------- 81 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE----------------------------------
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE----------------------------------
Confidence 4456777888899999999999888888999999999887654331
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC----CcEEEEECCCCcEEEEe---ecC
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD----KTVRLWDMETKSCLKLF---AHN 594 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D----gtV~IWDl~t~~~i~~~---~h~ 594 (969)
+..+...+.++++++ +.++++...+ +.|.+||..++.....+ .+.
T Consensus 82 ---------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 82 ---------------------------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp ---------------------------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred ---------------------------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 112446789999998 5666666655 68999999988765444 245
Q ss_pred CCeEEEEEecCCCCEEEEEEC------CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcCC
Q 002086 595 DYVTCIQFNPMDDDYFISGSL------DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALI-GSHKGSCRLYSIED 667 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~------Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Las-gs~dg~I~IwDl~~ 667 (969)
..+.+++++| ++.++++... .+.|..||..++++..+......+..++|+|+|+.|++ .+.++.|.+||+..
T Consensus 135 ~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 135 YCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp CCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 6799999999 8887776654 35677777776665554444456889999999986655 45678999999964
Q ss_pred -CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecC----CCCeEEEEEeCCC
Q 002086 668 -SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRN----TSSQISAAFNADG 741 (969)
Q Consensus 668 -~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~----~~~V~sl~fspdg 741 (969)
+................ ...+..+++++++ .++++...++.|.+||.... ...+..... ...+.+++|+||+
T Consensus 214 ~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 214 DGVTIQPFGATIPYYFTG-HEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp TSSSEEEEEEEEEEECCS-SSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred CCcCcccccceEEEecCC-CCCCCceEECCCC-CEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCC
Confidence 32221110000000111 1467889999987 66666677899999997432 222222111 1157899999998
Q ss_pred CEEEEEeCCC
Q 002086 742 KYIISASEDS 751 (969)
Q Consensus 742 ~~LaSgs~Dg 751 (969)
+.|+.++.++
T Consensus 292 ~~L~v~~~~g 301 (333)
T 2dg1_A 292 NQLIICSNDI 301 (333)
T ss_dssp CEEEEEEECG
T ss_pred CEEEEEeCcc
Confidence 7777666553
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=154.73 Aligned_cols=249 Identities=12% Similarity=0.121 Sum_probs=164.8
Q ss_pred cccceeeeEecccccC-----EEEEEEeCCCCEEEEEeCC---CcEEEEecccceEEEeecCCccCcccccccCCCCCcc
Q 002086 438 LSALHLCQEIQAHEGS-----IWTIKFSLDARFLASAGED---RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASS 509 (969)
Q Consensus 438 l~~~~l~~~L~gH~~~-----I~~l~fSpDg~~LaTgs~D---gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~ 509 (969)
..+...+..|..+... +.+++|+|||++|+.+... ..|.+||+.+++......
T Consensus 17 ~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~------------------- 77 (396)
T 3c5m_A 17 SDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE------------------- 77 (396)
T ss_dssp TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-------------------
T ss_pred CCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-------------------
Confidence 3344444555554433 7889999999998877543 468888988776543211
Q ss_pred CCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEE
Q 002086 510 LDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCL 588 (969)
Q Consensus 510 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i 588 (969)
++......+.|+| ++.|+.++.++.|++||+.+++..
T Consensus 78 ------------------------------------------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 78 ------------------------------------------GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp ------------------------------------------SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred ------------------------------------------CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 0111112357888 789999999999999999999877
Q ss_pred EEee-cCCCeEE-------------------EEEecCCCCEEEEE-----ECCCeEEEEeCCCceEEEEecCCCCEEEEE
Q 002086 589 KLFA-HNDYVTC-------------------IQFNPMDDDYFISG-----SLDAKVRIWSISDRLVVDWTDLHEMVTAAC 643 (969)
Q Consensus 589 ~~~~-h~~~V~s-------------------v~fsp~~~~~L~sg-----s~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~ 643 (969)
.... +...... +.|+| +++.++.+ ..+..|++||+.+++...+..+...+..+.
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~ 194 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPI 194 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccce
Confidence 6664 3332222 24455 55554433 356789999999988777777777899999
Q ss_pred Ecc-CCCEEEEEeCC------CcEEEEEcCCCceeeeeeeeecccccCC-CCCeEEEEEcCCCCceEEEEeCC-----Cc
Q 002086 644 YTP-DGQNALIGSHK------GSCRLYSIEDSKLHQLNQVDFQTKKKSS-TRKITGFQFSPSNPSEVLVTSAD-----SR 710 (969)
Q Consensus 644 fsp-dg~~Lasgs~d------g~I~IwDl~~~~~~~~~~~~~~~~~~~h-~~~It~l~fspd~~~~l~sgs~D-----g~ 710 (969)
|+| ++..|+..+.+ ..|.+||+.+++..... ... ...+..+.|+|++ ..|+.++.+ +.
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--------~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK--------EHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRV 265 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS--------CCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEE
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee--------ccCCCccccceEECCCC-CEEEEEecCCCCccce
Confidence 999 78877776543 36888898765532211 111 2357889999998 555554433 44
Q ss_pred EEEEeCCcceEE-EEeecCCCCeEEEEEeC-CCCEEEEEe----------------CCCcEEEEEcCCC
Q 002086 711 IRILDGLDIVHK-FRGFRNTSSQISAAFNA-DGKYIISAS----------------EDSQVYVWKREEH 761 (969)
Q Consensus 711 I~IwD~~~~~~~-~~~~~~~~~V~sl~fsp-dg~~LaSgs----------------~Dg~I~IWdl~t~ 761 (969)
|++||....... +.... ... +.|+| ||++|++++ .++.|++||+.++
T Consensus 266 l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 266 IYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred EEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 999997653322 22111 123 89999 999988765 3478999999874
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.3e-12 Score=136.09 Aligned_cols=241 Identities=9% Similarity=0.030 Sum_probs=170.6
Q ss_pred eeeEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
.+..+..+.....+++|+|+|+ +++++..++.|.+|+..++ ..
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---------------------------------- 62 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---------------------------------- 62 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE----------------------------------
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE----------------------------------
Confidence 3445666777889999999998 8888888999999998765 22
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-----cCC
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA-----HND 595 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-----h~~ 595 (969)
.+..+...+.++++++ +.++++...++.|.+||..+++...... ...
T Consensus 63 ---------------------------~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 115 (296)
T 3e5z_A 63 ---------------------------PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLN 115 (296)
T ss_dssp ---------------------------EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECC
T ss_pred ---------------------------EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCC
Confidence 2223456688999998 6666666667999999998888765542 224
Q ss_pred CeEEEEEecCCCCEEEEE----E-------------CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC
Q 002086 596 YVTCIQFNPMDDDYFISG----S-------------LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG 658 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sg----s-------------~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg 658 (969)
.+..++++| +++++++. . ..+.|..++.. +++.........+..++|+|+++.+++.+.++
T Consensus 116 ~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~ 193 (296)
T 3e5z_A 116 SPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDN 193 (296)
T ss_dssp CCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTT
T ss_pred CCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCC
Confidence 567899999 88888873 2 13467777766 66666666667789999999999997777889
Q ss_pred cEEEEEcC-CCce-eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEE
Q 002086 659 SCRLYSIE-DSKL-HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAA 736 (969)
Q Consensus 659 ~I~IwDl~-~~~~-~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~ 736 (969)
.|.+|++. ++.+ ..... + ..+...+.++++++++ .++++. ++.|.+|+..... ......+.. +.+++
T Consensus 194 ~i~~~~~~~~g~~~~~~~~--~----~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~g~~-~~~~~~~~~-~~~~~ 262 (296)
T 3e5z_A 194 ATHRYCLNARGETEYQGVH--F----TVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPDGDE-LGRVLTPQT-TSNLC 262 (296)
T ss_dssp EEEEEEECSSSCEEEEEEE--E----CCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTTSCE-EEEEECSSC-CCEEE
T ss_pred eEEEEEECCCCcCcCCCeE--e----eCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCCCCE-EEEEECCCC-ceeEE
Confidence 99999997 4443 11111 1 1134456789999988 444444 8899999965322 112222333 78899
Q ss_pred E-eCCCCEEEEEeCCCcEEEEEcCC
Q 002086 737 F-NADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 737 f-spdg~~LaSgs~Dg~I~IWdl~t 760 (969)
| .|+++.|++++.+ .|..++.++
T Consensus 263 f~~~d~~~L~v~t~~-~l~~~~~~~ 286 (296)
T 3e5z_A 263 FGGPEGRTLYMTVST-EFWSIETNV 286 (296)
T ss_dssp EESTTSCEEEEEETT-EEEEEECSC
T ss_pred EECCCCCEEEEEcCC-eEEEEEccc
Confidence 9 5899999998876 455556655
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-12 Score=146.29 Aligned_cols=198 Identities=9% Similarity=0.094 Sum_probs=138.1
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECC-CCcEEEEeecC--CCeEEEEEecCCCCE--EEEEE-------------C
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDME-TKSCLKLFAHN--DYVTCIQFNPMDDDY--FISGS-------------L 615 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~-t~~~i~~~~h~--~~V~sv~fsp~~~~~--L~sgs-------------~ 615 (969)
..+..++|+| +++|++++.+ .|.+|++. +++......+. +.+.+++|+| ++++ ++++. .
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 3567899999 7888888888 99999997 78776554332 3466789999 8884 44543 6
Q ss_pred CCeEEEEeCC-CceEEEEe-----cCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcC-CCceeeeeeeeecccccCCCC
Q 002086 616 DAKVRIWSIS-DRLVVDWT-----DLHEMVTAACYTPDGQNALIGSH-KGSCRLYSIE-DSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 616 Dg~I~IWDl~-~~~~~~~~-----~~~~~V~sv~fspdg~~Lasgs~-dg~I~IwDl~-~~~~~~~~~~~~~~~~~~h~~ 687 (969)
+|.+.+|++. .+++.... .+...+.+++|+|+|++|+++.. ++.|++|++. +++......+. ...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~----~~~~g~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD----APDPGD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE----CSSTTC
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe----cCCCCC
Confidence 8999999997 45543222 24467999999999998887764 6899999998 66653222111 012356
Q ss_pred CeEEEEEcCCCCceEEEEe-CCCcEEEEeCC--cceE-----EEEeecC-----CC------CeEEEE-EeCCCCEEEEE
Q 002086 688 KITGFQFSPSNPSEVLVTS-ADSRIRILDGL--DIVH-----KFRGFRN-----TS------SQISAA-FNADGKYIISA 747 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~--~~~~-----~~~~~~~-----~~------~V~sl~-fspdg~~LaSg 747 (969)
.+..++|+|++ +++++++ .++.|.+|+.. +... .+..... .. .+..++ |+|||++|+++
T Consensus 194 ~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 194 HPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 68999999998 5666655 57899999743 2211 1221111 11 478899 99999998877
Q ss_pred eCCC------cEEEEEcC
Q 002086 748 SEDS------QVYVWKRE 759 (969)
Q Consensus 748 s~Dg------~I~IWdl~ 759 (969)
+.+. .|.+|++.
T Consensus 273 ~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEESSTTSCCEEEEEEEC
T ss_pred CCCCCCCCCCeEEEEEEC
Confidence 6533 89999996
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-13 Score=162.71 Aligned_cols=255 Identities=9% Similarity=0.026 Sum_probs=169.2
Q ss_pred eEecccccCEEEEEEeCCCCEEEEE--eCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASA--GEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTg--s~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
..+.+|...|..++|++++-++++. +.++...||....+.....+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-------------------------- 70 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNV-------------------------- 70 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCB--------------------------
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccc--------------------------
Confidence 3467899999999999887777777 668899999864332222111100000
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEec--C-CcE-EEEEeC-CCcEEEEECC--C-CcEEEEee--
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS--R-SHL-LLSSSM-DKTVRLWDME--T-KSCLKLFA-- 592 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs--~-~~~-L~Sgs~-DgtV~IWDl~--t-~~~i~~~~-- 592 (969)
......+.+. ...|+ | ++. |+.++. +..|.+|++. . ++......
T Consensus 71 ------------------------~~~~~~~~~~--~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~ 124 (662)
T 3azo_A 71 ------------------------RNRVFEYSGF--PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS 124 (662)
T ss_dssp ------------------------CCCGGGTCCC--CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC
T ss_pred ------------------------cccccccCCc--cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc
Confidence 0001111111 23343 7 566 555543 5677778876 3 55444444
Q ss_pred ---cCCCeEEEEEecCCCCEEEEEECC----------CeEEEEeCCC------ceEEEEe-cCCCCEEEEEEccCCCEEE
Q 002086 593 ---HNDYVTCIQFNPMDDDYFISGSLD----------AKVRIWSISD------RLVVDWT-DLHEMVTAACYTPDGQNAL 652 (969)
Q Consensus 593 ---h~~~V~sv~fsp~~~~~L~sgs~D----------g~I~IWDl~~------~~~~~~~-~~~~~V~sv~fspdg~~La 652 (969)
|...+.+++|+| +++.|++++.+ ..|++||+.+ +....+. .+...+..++|+|||++|+
T Consensus 125 ~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la 203 (662)
T 3azo_A 125 AVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAV 203 (662)
T ss_dssp CSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEE
T ss_pred cCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEE
Confidence 667889999999 99999998877 5899999998 7777766 6667788899999999999
Q ss_pred EEeCC--------CcEEEEEcC-CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC--cEEEEeCCcceE
Q 002086 653 IGSHK--------GSCRLYSIE-DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS--RIRILDGLDIVH 721 (969)
Q Consensus 653 sgs~d--------g~I~IwDl~-~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg--~I~IwD~~~~~~ 721 (969)
.++.+ ..|++||+. ++.......+ ...+...+..+.|+|++. +++++..++ .|++||......
T Consensus 204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l-----~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 204 WLAWDHPRMPWEGTELKTARVTEDGRFADTRTL-----LGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE-----EEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCE
T ss_pred EEECCCCCCCCCCcEEEEEEECCCCcccccEEe-----CCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCce
Confidence 87755 379999998 4622111111 123456789999999994 778888888 677777533221
Q ss_pred -EEEeecCCC-------CeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 722 -KFRGFRNTS-------SQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 722 -~~~~~~~~~-------~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.+....... .+..++|+++++++++++. +.++||.++
T Consensus 278 ~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 278 TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 111111110 1457899999999999999 999999543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=161.29 Aligned_cols=260 Identities=12% Similarity=0.117 Sum_probs=156.8
Q ss_pred cccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec-CCccCcccccccCCCCCccCCCCC
Q 002086 436 KDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE-GNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~-~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+++.+.++. .|..|.+.+...+|||||+.||.+. |+.|.+|++.+++...... +....
T Consensus 97 ~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------------- 155 (740)
T 4a5s_A 97 YDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------------- 155 (740)
T ss_dssp EETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------------
T ss_pred EECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------------
Confidence 455554433 4677889999999999999999985 7899999998877654211 11000
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCC---------CCEEEEEecC-CcEEEEEeCC----------
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHL---------DDVLDLSWSR-SHLLLSSSMD---------- 574 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~---------~~I~~l~fs~-~~~L~Sgs~D---------- 574 (969)
.+.++. +....+.|+| ++.|+.++.|
T Consensus 156 ----------------------------------~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~ 201 (740)
T 4a5s_A 156 ----------------------------------IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS 201 (740)
T ss_dssp ----------------------------------EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred ----------------------------------eecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEE
Confidence 011111 1112244444 3344433211
Q ss_pred --------------------------CcEEEEECCC---C---cEEEEee------cCCCeEEEEEecCCCCEEEEEEC-
Q 002086 575 --------------------------KTVRLWDMET---K---SCLKLFA------HNDYVTCIQFNPMDDDYFISGSL- 615 (969)
Q Consensus 575 --------------------------gtV~IWDl~t---~---~~i~~~~------h~~~V~sv~fsp~~~~~L~sgs~- 615 (969)
.+|++||+.+ + +...... |...+..++|+| +++.++....
T Consensus 202 ~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r 280 (740)
T 4a5s_A 202 FYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRR 280 (740)
T ss_dssp ECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEES
T ss_pred eecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCC
Confidence 2589999999 7 4544432 778899999999 8886665533
Q ss_pred ---CCeEEEEeCCCce----EE---EE--ecCCCCEE-----EEEEccCCCEEE-EEeC-CC--cEEEEEcCCCceeeee
Q 002086 616 ---DAKVRIWSISDRL----VV---DW--TDLHEMVT-----AACYTPDGQNAL-IGSH-KG--SCRLYSIEDSKLHQLN 674 (969)
Q Consensus 616 ---Dg~I~IWDl~~~~----~~---~~--~~~~~~V~-----sv~fspdg~~La-sgs~-dg--~I~IwDl~~~~~~~~~ 674 (969)
+..|++||+.+++ +. .+ ..+...|. .+.|+|||+.|+ ..+. +| .|++||+.++.....
T Consensus 281 ~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l- 359 (740)
T 4a5s_A 281 IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI- 359 (740)
T ss_dssp STTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEES-
T ss_pred CCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEec-
Confidence 3479999998876 21 11 33443333 688999999877 6653 33 688889887664332
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeC----CC--cEEEEeCCcceEEEEeec----CCCCeEEEEEeCCCCEE
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA----DS--RIRILDGLDIVHKFRGFR----NTSSQISAAFNADGKYI 744 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~----Dg--~I~IwD~~~~~~~~~~~~----~~~~V~sl~fspdg~~L 744 (969)
......+..+.. +++...++++.. .+ .|+..++........... .......+.|+|+++++
T Consensus 360 --------T~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~ 430 (740)
T 4a5s_A 360 --------TKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYY 430 (740)
T ss_dssp --------CCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEE
T ss_pred --------ccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEE
Confidence 222344555432 345455555554 23 344445443222111111 13457889999999987
Q ss_pred EEEeCC---CcEEEEEcCCC
Q 002086 745 ISASED---SQVYVWKREEH 761 (969)
Q Consensus 745 aSgs~D---g~I~IWdl~t~ 761 (969)
+..... ..+.+++..++
T Consensus 431 ~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 431 QLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp EEEECSBSSCEEEEEETTTT
T ss_pred EEEeCCCCCCEEEEEECCCC
Confidence 765543 36888888763
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-13 Score=149.15 Aligned_cols=251 Identities=12% Similarity=0.076 Sum_probs=157.3
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 454 IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 454 I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
+..+.|+|||++|+.++.++.|.+||+.+++........... .. ++.
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~------~~-------~g~-------------------- 129 (396)
T 3c5m_A 83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW------KG-------YGT-------------------- 129 (396)
T ss_dssp TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE------EE-------EEE--------------------
T ss_pred cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc------CC-------CCC--------------------
Confidence 344889999999999999999999999988765433211100 00 000
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEE-----eCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCC
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSS-----SMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDD 607 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sg-----s~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~ 607 (969)
.+.-........+ ....+.|+| ++.++.+ ..+..|.+||+.+++......+...+..+.|+|.++
T Consensus 130 ----~l~~~~~~~~~~~-----~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg 200 (396)
T 3c5m_A 130 ----WVANSDCTKLVGI-----EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDD 200 (396)
T ss_dssp ----EEECTTSSEEEEE-----EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEE
T ss_pred ----EEEeccCCccccc-----cccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCC
Confidence 0000000000000 001234566 4544433 456789999999999888878888999999998446
Q ss_pred CEEEEEECC------CeEEEEeCCCceEEEEecCC--CCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeee
Q 002086 608 DYFISGSLD------AKVRIWSISDRLVVDWTDLH--EMVTAACYTPDGQNALIGSHK-----GSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 608 ~~L~sgs~D------g~I~IWDl~~~~~~~~~~~~--~~V~sv~fspdg~~Lasgs~d-----g~I~IwDl~~~~~~~~~ 674 (969)
..|+.++.+ ..|.+||+.++....+..+. ..+..++|+|+|++|+.++.+ +.|++||+.+++.....
T Consensus 201 ~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 280 (396)
T 3c5m_A 201 STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM 280 (396)
T ss_dssp EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE
T ss_pred CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee
Confidence 666665543 46899999877665555432 357889999999988776544 44999999887654322
Q ss_pred eeeecccccCCCCCeEEEEEcC-CCCceEEEEe----------------CCCcEEEEeCCcce-EEEEeecCCC------
Q 002086 675 QVDFQTKKKSSTRKITGFQFSP-SNPSEVLVTS----------------ADSRIRILDGLDIV-HKFRGFRNTS------ 730 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fsp-d~~~~l~sgs----------------~Dg~I~IwD~~~~~-~~~~~~~~~~------ 730 (969)
.. . ... +.|+| ++ .+++.++ .+..|++||..... ..+..+....
T Consensus 281 ~~------~----~~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 348 (396)
T 3c5m_A 281 VM------P----PCS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGD 348 (396)
T ss_dssp EC------C----SEE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTB
T ss_pred eC------C----CCC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccc
Confidence 11 1 123 88999 88 5666544 34789999965432 2233222110
Q ss_pred ---CeEEEEEeCCCCEEEEEeC-CCcEEEEEc
Q 002086 731 ---SQISAAFNADGKYIISASE-DSQVYVWKR 758 (969)
Q Consensus 731 ---~V~sl~fspdg~~LaSgs~-Dg~I~IWdl 758 (969)
.+..++|+|||++|+.++. ++...||.+
T Consensus 349 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 349 RQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp SSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 2456789999998887765 455455544
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-11 Score=131.51 Aligned_cols=237 Identities=8% Similarity=0.043 Sum_probs=167.6
Q ss_pred CEEEEEEeCCCCEEE-EEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 453 SIWTIKFSLDARFLA-SAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 453 ~I~~l~fSpDg~~La-Tgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
...+|+++++|++++ +...++.|.+|+..++.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~------------------------------------------- 61 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------------------------------- 61 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-------------------------------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-------------------------------------------
Confidence 778999999999777 546789999998754332110
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCE
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDY 609 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~ 609 (969)
...+...+.++++.+ +.++++.. ++.|.+||.......... .....+.++++++ ++.+
T Consensus 62 ------------------~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l 121 (270)
T 1rwi_B 62 ------------------PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAV 121 (270)
T ss_dssp ------------------CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCE
T ss_pred ------------------eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCE
Confidence 001223456788887 55555444 889999998876544322 3336789999999 8888
Q ss_pred EEEEECCCeEEEEeCCCceEEEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC
Q 002086 610 FISGSLDAKVRIWSISDRLVVDWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK 688 (969)
Q Consensus 610 L~sgs~Dg~I~IWDl~~~~~~~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~ 688 (969)
+++...++.|.+|+..+....... .....+..++++++|+++++...++.|.+||.......... ......
T Consensus 122 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~ 193 (270)
T 1rwi_B 122 YVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP--------FTDITA 193 (270)
T ss_dssp EEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC--------CSSCCS
T ss_pred EEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec--------ccCCCC
Confidence 887777899999987665443322 22346788999999997777777889999998876543211 122367
Q ss_pred eEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 689 ITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 689 It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+.++++++++ .++++...++.|.+|+............+...+.+++++++|+++++...++.|++|++...
T Consensus 194 p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 194 PWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEEEECTTC-CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred ceEEEECCCC-CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 8899999987 67777777889999997654333322223356889999999999899999999999999874
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-11 Score=135.29 Aligned_cols=220 Identities=11% Similarity=0.148 Sum_probs=151.0
Q ss_pred cCEEEEEEeCCCCEEEEEeCC---C--cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 452 GSIWTIKFSLDARFLASAGED---R--VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~D---g--tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
..+..++|+|||++||.++.+ + .|.+|++.+++....
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l-------------------------------------- 100 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI-------------------------------------- 100 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE--------------------------------------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE--------------------------------------
Confidence 568899999999999988754 3 377777776654331
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC---------------------------CcEE
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD---------------------------KTVR 578 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D---------------------------gtV~ 578 (969)
..+.. +..+.|+| ++.|+.++.+ ..|.
T Consensus 101 ------------------------~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (347)
T 2gop_A 101 ------------------------LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW 155 (347)
T ss_dssp ------------------------EEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEE
T ss_pred ------------------------EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE
Confidence 11223 88899998 6777777632 5799
Q ss_pred EEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC---------eEEEEeCCCceEEEEecCCCCEEEEEEccCCC
Q 002086 579 LWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA---------KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQ 649 (969)
Q Consensus 579 IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg---------~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~ 649 (969)
+||+.+++.+..+... .+..++|+| ++ +++++..++ .|.++| +++...+..+ ..+..+ +|+|+
T Consensus 156 ~~d~~~~~~~~~l~~~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~ 227 (347)
T 2gop_A 156 IFDTESEEVIEEFEKP-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGE 227 (347)
T ss_dssp EEETTTTEEEEEEEEE-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSS
T ss_pred EEECCCCeEEeeecCC-CcccccCCC-Ce-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCC
Confidence 9999998874444224 889999999 78 777776542 355555 6666555554 455544 99999
Q ss_pred EEEEEeCC--------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEE-EEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 650 NALIGSHK--------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG-FQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 650 ~Lasgs~d--------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~-l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
+|+.++.+ ..|.+|| +++.... ...+...+.. +.|+ ++ ++++++.++.++|| .....
T Consensus 228 ~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l--------~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 228 RILLYGKPEKKYMSEHNKLYIYD--GKEVMGI--------LDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp CEEEEECCSSSCCCSSCEEEEEC--SSCEEES--------STTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSS
T ss_pred EEEEEEccccCCccccceEEEEC--CCceEec--------cccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCc
Confidence 98887754 3677787 4433211 1344566776 8998 65 88888999999998 65322
Q ss_pred EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcE-EEEEcC
Q 002086 721 HKFRGFRNTSSQISAAFNADGKYIISASEDSQV-YVWKRE 759 (969)
Q Consensus 721 ~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I-~IWdl~ 759 (969)
......+...|.+++|+| .++++++.++.. .||.++
T Consensus 294 -~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 294 -IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred -eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 222233466788999999 688888877765 777775
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-11 Score=150.92 Aligned_cols=242 Identities=11% Similarity=0.085 Sum_probs=167.3
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCC-----cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDR-----VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~Dg-----tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+|...+..++|||||++||.+..++ .|++||+.+++.+...
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~---------------------------------- 167 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV---------------------------------- 167 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE----------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc----------------------------------
Confidence 4666789999999999998776543 8999999988765410
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCc----------------EEEEECCCCc
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKT----------------VRLWDMETKS 586 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dgt----------------V~IWDl~t~~ 586 (969)
+. + ..+..++|+| ++.|+.++.++. |++|++.+++
T Consensus 168 --------------------------~~-~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~ 219 (710)
T 2xdw_A 168 --------------------------LE-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ 219 (710)
T ss_dssp --------------------------EE-E-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred --------------------------cc-C-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc
Confidence 11 1 1245689998 788888888766 9999999876
Q ss_pred E--EEEe---ecCCCeEEEEEecCCCCEEEEEEC-----CCeEEEEeCCC------c--eEEEEecCCCCEEEEEEccCC
Q 002086 587 C--LKLF---AHNDYVTCIQFNPMDDDYFISGSL-----DAKVRIWSISD------R--LVVDWTDLHEMVTAACYTPDG 648 (969)
Q Consensus 587 ~--i~~~---~h~~~V~sv~fsp~~~~~L~sgs~-----Dg~I~IWDl~~------~--~~~~~~~~~~~V~sv~fspdg 648 (969)
. ..++ .|...+..+.|+| ++.+|+.++. +..|++||+.+ + ....+..+...+.. .|+++|
T Consensus 220 ~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg 297 (710)
T 2xdw_A 220 SEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEG 297 (710)
T ss_dssp GGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEET
T ss_pred ccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccC
Confidence 2 2233 2456688999999 9998887765 56899999976 4 45556665555554 588999
Q ss_pred CEEEEEeCCC----cEEEEEcCCCceeeeeeeeecccccCCC-CCeEEEEEcCCCCceEEEEeCCCc--EEEEeCCcc--
Q 002086 649 QNALIGSHKG----SCRLYSIEDSKLHQLNQVDFQTKKKSST-RKITGFQFSPSNPSEVLVTSADSR--IRILDGLDI-- 719 (969)
Q Consensus 649 ~~Lasgs~dg----~I~IwDl~~~~~~~~~~~~~~~~~~~h~-~~It~l~fspd~~~~l~sgs~Dg~--I~IwD~~~~-- 719 (969)
+.|+..+..+ .|.+||+.++.......+ . .... ..+..+.|++++ .++++...++. |++|+....
T Consensus 298 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l--~---~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~~ 371 (710)
T 2xdw_A 298 TVFTFKTNRHSPNYRLINIDFTDPEESKWKVL--V---PEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGAL 371 (710)
T ss_dssp TEEEEEECTTCTTCEEEEEETTSCCGGGCEEE--E---CCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCCE
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCCcccceec--c---CCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCCE
Confidence 9888766533 699999987642100011 0 1112 357788998655 67778888875 566776332
Q ss_pred eEEEEeecCCCCeEEEEEeCCCCEEEEE-e---CCCcEEEEEcCCCC
Q 002086 720 VHKFRGFRNTSSQISAAFNADGKYIISA-S---EDSQVYVWKREEHR 762 (969)
Q Consensus 720 ~~~~~~~~~~~~V~sl~fspdg~~LaSg-s---~Dg~I~IWdl~t~~ 762 (969)
...+.. +...+..++++|++..|+.. + ..+.|++||+.+++
T Consensus 372 ~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 372 LKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 233332 35668889999998766633 2 24789999998754
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.40 E-value=9.9e-12 Score=151.30 Aligned_cols=205 Identities=11% Similarity=0.015 Sum_probs=136.2
Q ss_pred CCCCEEEEEecC-CcEEEEEeCC----------CcEEEEECCC------CcEEEEe-ecCCCeEEEEEecCCCCEEEEEE
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSMD----------KTVRLWDMET------KSCLKLF-AHNDYVTCIQFNPMDDDYFISGS 614 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~D----------gtV~IWDl~t------~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs 614 (969)
|...+.+++|+| ++.|++++.+ ..|++||+.+ ++..... .+...+..++|+| ++++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEE
Confidence 556788999999 7889988877 5899999998 7766666 6677888999999 999998877
Q ss_pred CC--------CeEEEEeCC-Cc---eEEEEecC-CCCEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeeeeec
Q 002086 615 LD--------AKVRIWSIS-DR---LVVDWTDL-HEMVTAACYTPDGQNALIGSHKG--SCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 615 ~D--------g~I~IWDl~-~~---~~~~~~~~-~~~V~sv~fspdg~~Lasgs~dg--~I~IwDl~~~~~~~~~~~~~~ 679 (969)
.+ ..|++||+. ++ +...+... ...+..++|+|||++++++..++ .|.+||+.+++..........
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 286 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE 286 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc
Confidence 55 379999999 56 55555543 57899999999999777888888 666667656654332211000
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE--eCCcceEEEEeecCCCCeEEE-EEeCCCCEEEEEeCCC--cEE
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL--DGLDIVHKFRGFRNTSSQISA-AFNADGKYIISASEDS--QVY 754 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw--D~~~~~~~~~~~~~~~~V~sl-~fspdg~~LaSgs~Dg--~I~ 754 (969)
.....-.-.+..++|+|++ .+++++.. +.++|| |..... ......+...+..+ +++.+.-++++++.+. .|+
T Consensus 287 ~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 287 FAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp SSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred ccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 0000000114568899887 68888888 999998 543222 12222334455555 4443333444555554 455
Q ss_pred EEEcCCC
Q 002086 755 VWKREEH 761 (969)
Q Consensus 755 IWdl~t~ 761 (969)
+||+.++
T Consensus 364 ~~d~~~g 370 (662)
T 3azo_A 364 ELDTVTG 370 (662)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 6666553
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-11 Score=135.63 Aligned_cols=201 Identities=13% Similarity=0.164 Sum_probs=145.1
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECC----CeEEEE
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLD----AKVRIW 622 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~D----g~I~IW 622 (969)
.+.++...+.+++|++ +.+++++..++.|.+||..+++..... .+...+.++++++ ++.++++...+ +.|.+|
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~ 117 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAA 117 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEE
Confidence 3445666778999998 666778888999999999998877655 5678899999999 88888777666 689999
Q ss_pred eCCCceEEEEe---cCCCCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE
Q 002086 623 SISDRLVVDWT---DLHEMVTAACYTPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 623 Dl~~~~~~~~~---~~~~~V~sv~fspdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
|..++...... .....+..++++|+|+++++... .+.|..||..+++..... .....+..++
T Consensus 118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~i~ 188 (333)
T 2dg1_A 118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII---------QNISVANGIA 188 (333)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE---------EEESSEEEEE
T ss_pred eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee---------cCCCcccceE
Confidence 99887765332 23456899999999987776653 356666766555443221 1123478899
Q ss_pred EcCCCCceEEEEeCCCcEEEEeCCc---ceEEE-----EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 694 FSPSNPSEVLVTSADSRIRILDGLD---IVHKF-----RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~-----~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
|+|++..++++...++.|++||... ....+ ........+..++++++|.++++...++.|.+|+.+
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 9999843555556788999999632 22211 111112356789999999988888888999999974
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.5e-11 Score=131.29 Aligned_cols=235 Identities=9% Similarity=0.015 Sum_probs=165.6
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 452 GSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
.....|.+. +++++++...++.|.+||..+++.+..+.
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~----------------------------------------- 81 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT----------------------------------------- 81 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-----------------------------------------
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-----------------------------------------
Confidence 456778875 45566666778999999999888765321
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEe-CCCcEEEEECCCCcEEEEeecCC------CeEEEEEec
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSS-MDKTVRLWDMETKSCLKLFAHND------YVTCIQFNP 604 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs-~DgtV~IWDl~t~~~i~~~~h~~------~V~sv~fsp 604 (969)
.......++++++..++.+. .++.|.+||..+++....+.... ....|++ .
T Consensus 82 ---------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~ 139 (328)
T 3dsm_A 82 ---------------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y 139 (328)
T ss_dssp ---------------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E
T ss_pred ---------------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E
Confidence 22456788887644555555 89999999999999887775444 6677888 3
Q ss_pred CCCCEEEEEE-CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC----------CcEEEEEcCCCceeee
Q 002086 605 MDDDYFISGS-LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK----------GSCRLYSIEDSKLHQL 673 (969)
Q Consensus 605 ~~~~~L~sgs-~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d----------g~I~IwDl~~~~~~~~ 673 (969)
++.++++.. .++.|.+||+.++++............++++|+|++++++..+ +.|.+||..+++....
T Consensus 140 -~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~ 218 (328)
T 3dsm_A 140 -GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ 218 (328)
T ss_dssp -TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE
T ss_pred -CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE
Confidence 444444443 4899999999999887766666667889999999877766554 7899999998876543
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe-ec-CCCCeEEEEEeC-CCCEEEEE---
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG-FR-NTSSQISAAFNA-DGKYIISA--- 747 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~-~~-~~~~V~sl~fsp-dg~~LaSg--- 747 (969)
..+ ........++|+|++ ..|+++.. .|.+||.......... .. .......++++| ++.++++.
T Consensus 219 ~~~-------~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~ 288 (328)
T 3dsm_A 219 FKF-------KLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAID 288 (328)
T ss_dssp EEC-------CTTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTT
T ss_pred Eec-------CCCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccc
Confidence 221 112368899999988 56666544 8999996543221111 11 134578899999 55666666
Q ss_pred -eCCCcEEEEEcCCCC
Q 002086 748 -SEDSQVYVWKREEHR 762 (969)
Q Consensus 748 -s~Dg~I~IWdl~t~~ 762 (969)
..++.|.+||.. ++
T Consensus 289 y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 289 YQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp SSSEEEEEEECTT-CC
T ss_pred cccCCEEEEECCC-CC
Confidence 578899999987 44
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.7e-12 Score=153.33 Aligned_cols=243 Identities=10% Similarity=0.008 Sum_probs=163.7
Q ss_pred ccccCEEEEEEeCCCCEEE-----EEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 449 AHEGSIWTIKFSLDARFLA-----SAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~La-----Tgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+|...+.+++|||||++|| .|+.+.+|++||+.+++.+. ..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~-------------------------------- 163 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VD-------------------------------- 163 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SC--------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--Cc--------------------------------
Confidence 5777899999999999998 45556799999999876430 00
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCc-------------EEEEECCCCcE--
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKT-------------VRLWDMETKSC-- 587 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dgt-------------V~IWDl~t~~~-- 587 (969)
.+.+. ....++|+| ++.|+.++.|.. |++|++.+++.
T Consensus 164 -------------------------~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~ 216 (695)
T 2bkl_A 164 -------------------------VIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD 216 (695)
T ss_dssp -------------------------CBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC
T ss_pred -------------------------ccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc
Confidence 00000 014588999 788999988876 99999998862
Q ss_pred EEEe---ecCCCeEEEEEecCCCCEEEEEECCC----eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC----
Q 002086 588 LKLF---AHNDYVTCIQFNPMDDDYFISGSLDA----KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH---- 656 (969)
Q Consensus 588 i~~~---~h~~~V~sv~fsp~~~~~L~sgs~Dg----~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~---- 656 (969)
..++ .|...+.++.|+| ++.+|+.++.++ .|++|+..++....+..+...+....+ ++|. |+..+.
T Consensus 217 ~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~ 293 (695)
T 2bkl_A 217 TVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAP 293 (695)
T ss_dssp EEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCT
T ss_pred eEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCC
Confidence 2333 3556889999999 888888877666 788888777777666666666666666 5666 555443
Q ss_pred CCcEEEEEcCCCceeeeeeeeecccccCC-CCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC-cceEEEEe-ecCCCCeE
Q 002086 657 KGSCRLYSIEDSKLHQLNQVDFQTKKKSS-TRKITGFQFSPSNPSEVLVTSADSRIRILDGL-DIVHKFRG-FRNTSSQI 733 (969)
Q Consensus 657 dg~I~IwDl~~~~~~~~~~~~~~~~~~~h-~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-~~~~~~~~-~~~~~~V~ 733 (969)
++.|.+||+.++.......+ + ..+ ...+..+.|+ ++ .++++...|+..+||... ........ ......+.
T Consensus 294 ~~~l~~~d~~~~~~~~~~~l-~----~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~ 366 (695)
T 2bkl_A 294 RQRVFEVDPAKPARASWKEI-V----PEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAAS 366 (695)
T ss_dssp TCEEEEEBTTBCSGGGCEEE-E----CCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEEC
T ss_pred CCEEEEEeCCCCCccCCeEE-e----cCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEE
Confidence 57899999977642100111 0 112 4457788887 33 688888889988877532 11111111 12245567
Q ss_pred EEEEeCCCCEEEEEe----CCCcEEEEEcCCCC
Q 002086 734 SAAFNADGKYIISAS----EDSQVYVWKREEHR 762 (969)
Q Consensus 734 sl~fspdg~~LaSgs----~Dg~I~IWdl~t~~ 762 (969)
.++++|+++.|+... ..+.|++||+.+++
T Consensus 367 ~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 367 NLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp CCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 788999998776332 34789999998753
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-09 Score=116.74 Aligned_cols=240 Identities=7% Similarity=0.055 Sum_probs=172.5
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
+..+...+.+|++.++|+++++...++.|.+||.. ++....
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~-------------------------------------- 50 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEY-------------------------------------- 50 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE--------------------------------------
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe--------------------------------------
Confidence 44566789999999999988877778899999987 543221
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEe
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFN 603 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fs 603 (969)
.+..+...+.++++.+ +.++++...++.|..||.. ++..... .....+.++++.
T Consensus 51 ----------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~ 107 (299)
T 2z2n_A 51 ----------------------PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEG 107 (299)
T ss_dssp ----------------------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred ----------------------cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEEC
Confidence 0011235678899988 5666666668899999987 4432222 245678999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 604 PMDDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 604 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
+ ++.++++...++.|.+||. ++...... .....+..+++.++|..+++...++.|.+||. +++..... .
T Consensus 108 ~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~---~--- 178 (299)
T 2z2n_A 108 P-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFK---I--- 178 (299)
T ss_dssp T-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE---C---
T ss_pred C-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEee---C---
Confidence 8 7888887777889999999 55544432 23456899999999988777777889999998 65543210 1
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
......+.++++.+++ .++++...++.|.+||.......+........+.+++++++|.++++...++.|.+||..
T Consensus 179 -~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 179 -PTPASGPVGITKGNDD-ALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp -SSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred -CCCCCcceeEEECCCC-CEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 2234568899999987 566666668899999973333333333344668899999999977777678899999983
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-10 Score=121.95 Aligned_cols=247 Identities=9% Similarity=0.102 Sum_probs=169.7
Q ss_pred cccccCEEEEEEeCCCCEEEE-------EeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 448 QAHEGSIWTIKFSLDARFLAS-------AGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaT-------gs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
...-....+++|+++|+++++ +..++.|.+||..+++......
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~------------------------------ 63 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK------------------------------ 63 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC------------------------------
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe------------------------------
Confidence 334456789999999998888 5778999999987766532100
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCC-cEEEEEeCCCcEEEEECCCCcEEEE-ee-----c
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS-HLLLSSSMDKTVRLWDMETKSCLKL-FA-----H 593 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~-~~L~Sgs~DgtV~IWDl~t~~~i~~-~~-----h 593 (969)
....++...+.+++++++ ..|+.++..+.|.+||.. ++.... .. .
T Consensus 64 ---------------------------~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~ 115 (314)
T 1pjx_A 64 ---------------------------PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRR 115 (314)
T ss_dssp ---------------------------CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCB
T ss_pred ---------------------------cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCcc
Confidence 011224456889999885 777777666689999998 776554 32 1
Q ss_pred CCCeEEEEEecCCCCEEEEEECC---------------CeEEEEeCCCceEEEEecCCCCEEEEEEc----cCCCEEEEE
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLD---------------AKVRIWSISDRLVVDWTDLHEMVTAACYT----PDGQNALIG 654 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~D---------------g~I~IWDl~~~~~~~~~~~~~~V~sv~fs----pdg~~Lasg 654 (969)
...+.++++++ +++++++...+ +.|..||.. ++.............++|+ ++++.|+++
T Consensus 116 ~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~ 193 (314)
T 1pjx_A 116 MQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVA 193 (314)
T ss_dssp CBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEE
T ss_pred ccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEE
Confidence 23588999999 88877776655 578888876 6555544444567889999 999766555
Q ss_pred -eCCCcEEEEEcC-CCceeeeeeeeecccccCCC-CCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEEeecCC
Q 002086 655 -SHKGSCRLYSIE-DSKLHQLNQVDFQTKKKSST-RKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNT 729 (969)
Q Consensus 655 -s~dg~I~IwDl~-~~~~~~~~~~~~~~~~~~h~-~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~ 729 (969)
..++.|.+||+. .++......+ .....+. ..+..+++++++ .++++...++.|.+||..+ ....+. .+.
T Consensus 194 ~~~~~~i~~~~~~~~g~~~~~~~~---~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~ 267 (314)
T 1pjx_A 194 ETPTKKLWSYDIKGPAKIENKKVW---GHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIR--CPF 267 (314)
T ss_dssp ETTTTEEEEEEEEETTEEEEEEEE---EECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEE--CSS
T ss_pred ECCCCeEEEEECCCCCccccceEE---EECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEe--CCC
Confidence 567899999986 4433211111 1112222 567889999987 6777777889999999762 233332 233
Q ss_pred CCeEEEEEeCCCCEEE-EEeCCCcEEEEEcCC
Q 002086 730 SSQISAAFNADGKYII-SASEDSQVYVWKREE 760 (969)
Q Consensus 730 ~~V~sl~fspdg~~La-Sgs~Dg~I~IWdl~t 760 (969)
..+.+++|+++|++|+ +...++.|..|++..
T Consensus 268 ~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 268 EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 5688999999999554 555568999999875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-10 Score=128.87 Aligned_cols=183 Identities=13% Similarity=0.129 Sum_probs=125.6
Q ss_pred CCEEEEEecC-CcEEEEEeCC---C--cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC------------
Q 002086 555 DDVLDLSWSR-SHLLLSSSMD---K--TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD------------ 616 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~D---g--tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D------------ 616 (969)
..+..+.|+| ++.|+.++.+ + .|.+||+.+++......+.. +..++|+| +++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 3467899999 7788877654 2 48888999988877776555 99999999 88888887632
Q ss_pred ---------------CeEEEEeCCCceE-EEEecCCCCEEEEEEccCCCEEEEEeCCC-------cEEEEEcCCCceeee
Q 002086 617 ---------------AKVRIWSISDRLV-VDWTDLHEMVTAACYTPDGQNALIGSHKG-------SCRLYSIEDSKLHQL 673 (969)
Q Consensus 617 ---------------g~I~IWDl~~~~~-~~~~~~~~~V~sv~fspdg~~Lasgs~dg-------~I~IwDl~~~~~~~~ 673 (969)
..|++||+.+++. ..+.. . .+..++|+|+| +++++..++ ...||.+.+++....
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l 213 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKM 213 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEe
Confidence 5799999998877 44444 3 78899999999 777776542 345554444443221
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC--------CcEEEEeCCcceEEEEeecCCCCeEE-EEEeCCCCEE
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD--------SRIRILDGLDIVHKFRGFRNTSSQIS-AAFNADGKYI 744 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D--------g~I~IwD~~~~~~~~~~~~~~~~V~s-l~fspdg~~L 744 (969)
. .+ ..+..+ +|++ ..|+.++.+ ..|++|| .... ......+...+.. +.|+ |+ ++
T Consensus 214 ~---------~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 214 F---------EK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD-GKEV-MGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp E---------EE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC-SSCE-EESSTTCCSEEEEEEEET-TE-EE
T ss_pred c---------cC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC-CCce-EeccccCCcccCCccEEc-Cc-EE
Confidence 1 11 334444 8988 556555533 4688898 3222 1111223455665 8999 98 99
Q ss_pred EEEeCCCcEEEEEcCC
Q 002086 745 ISASEDSQVYVWKREE 760 (969)
Q Consensus 745 aSgs~Dg~I~IWdl~t 760 (969)
++++.++.++|| +.+
T Consensus 277 ~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWD 291 (347)
T ss_dssp EEEEETTEEEEE-EES
T ss_pred EEEecCCcEEEE-EcC
Confidence 999999999999 874
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=7.9e-11 Score=133.08 Aligned_cols=257 Identities=9% Similarity=0.044 Sum_probs=165.6
Q ss_pred EEEecC-CcEEEEEe----------CCCcEEEEECCCCcEEEEee-------cCCCeEEEEEecCCCCEEEEEEC--CCe
Q 002086 559 DLSWSR-SHLLLSSS----------MDKTVRLWDMETKSCLKLFA-------HNDYVTCIQFNPMDDDYFISGSL--DAK 618 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs----------~DgtV~IWDl~t~~~i~~~~-------h~~~V~sv~fsp~~~~~L~sgs~--Dg~ 618 (969)
.++|+| +++|+++. .+++|.+||+.+++.+..+. +......++|+| ++++|+++.. ++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCe
Confidence 789999 77888876 36789999999999887763 235678899999 9999988864 589
Q ss_pred EEEEeCCCceEEEE-ecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCC-CceeeeeeeeecccccCCCCCeEEEEEc
Q 002086 619 VRIWSISDRLVVDW-TDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIED-SKLHQLNQVDFQTKKKSSTRKITGFQFS 695 (969)
Q Consensus 619 I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~-~~~~~~~~~~~~~~~~~h~~~It~l~fs 695 (969)
|.+||+.+++++.. ...... ..+.+.|++ ..+++.+.||.+.+|++.. ++....... .........++ .+.+.
T Consensus 133 v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~--~~~~~~~~~~~-~~~~~ 208 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS--KQMFSVKDDPI-FIAPA 208 (361)
T ss_dssp EEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC--CCCSCTTTSCB-CSCCE
T ss_pred EEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc--cceEcCCCCce-EEEec
Confidence 99999999988876 655443 335677766 6778889999999999865 443311100 00001111121 22335
Q ss_pred CCCCceEEEEeCCCcEEEEeCCcce-EEEEee---c----C----CCCeEEEEEeCCCCEEEEEeC-----------CCc
Q 002086 696 PSNPSEVLVTSADSRIRILDGLDIV-HKFRGF---R----N----TSSQISAAFNADGKYIISASE-----------DSQ 752 (969)
Q Consensus 696 pd~~~~l~sgs~Dg~I~IwD~~~~~-~~~~~~---~----~----~~~V~sl~fspdg~~LaSgs~-----------Dg~ 752 (969)
+++ ..++..+.++.|+++|..... ...... . . ......++|+||+++++.+.. .+.
T Consensus 209 ~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 209 LDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp ECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred ccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 555 456666788999999965321 111110 0 0 011112689999888877653 347
Q ss_pred EEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcccc
Q 002086 753 VYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG 832 (969)
Q Consensus 753 I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~ 832 (969)
|.+||+.+. +.+..... +. +....++|++.++++.
T Consensus 288 v~viD~~t~------~~v~~i~~--------------------------------------~~-p~~ia~spdg~~l~v~ 322 (361)
T 2oiz_A 288 IWVMDTKTK------QRVARIPG--------------------------------------RD-ALSMTIDQQRNLMLTL 322 (361)
T ss_dssp EEEEETTTT------EEEEEEEC--------------------------------------TT-CCEEEEETTTTEEEEE
T ss_pred EEEEECCCC------cEEEEEec--------------------------------------CC-eeEEEECCCCCEEEEe
Confidence 999999873 21111100 01 3344568888888877
Q ss_pred CCCCccccCCCCCC--ccccCCCCCCCCccccccCCC
Q 002086 833 HSRRLLPPLPKKTN--KVERVPSPPEEELSLISHDPG 867 (969)
Q Consensus 833 ~~~~~L~~~~~~s~--~~~~~l~~pee~l~~is~hP~ 867 (969)
+. ..+..|...++ ++.+.+...-+.+..+..+|.
T Consensus 323 n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 323 DG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp CS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred CC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence 76 88999988887 666654344455555655554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.7e-09 Score=111.85 Aligned_cols=237 Identities=5% Similarity=0.020 Sum_probs=167.7
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.+...+.+|++.++|.++++...++.|..||.. ++....
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~---------------------------------------- 92 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEY---------------------------------------- 92 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE----------------------------------------
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEE----------------------------------------
Confidence 355789999999999988887778889999875 332110
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPM 605 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~ 605 (969)
.+..+...+.++++.+ +.++++...++.|.+||. +++..... .....+.++++.+
T Consensus 93 --------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~- 150 (299)
T 2z2n_A 93 --------------------TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS- 150 (299)
T ss_dssp --------------------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-
T ss_pred --------------------eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-
Confidence 0011234578899988 666666667889999999 66554433 3456789999998
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
++.++++...++.|..||. ++++.... .....+..++++++|.++++...++.|.+||. +++.... . ..
T Consensus 151 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~------~~ 221 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEF-K------IP 221 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-E------CS
T ss_pred CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEE-E------CC
Confidence 7887777777789999999 66655432 23456889999999987777667889999999 6554321 1 12
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.....+.++++.+++ .++++...++.|.+||.......+....+...+.++++ ++|.+.++.. .+.|..++.++
T Consensus 222 ~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 222 TPNARPHAITAGAGI-DLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp STTCCEEEEEECSTT-CEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCceeEEECCCC-CEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 345678999999987 55555557889999997443333333333456889999 8888777665 56788888765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-09 Score=119.56 Aligned_cols=266 Identities=10% Similarity=-0.050 Sum_probs=172.8
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEe----------CCCcEEEEecccceEEEeecCCccCcccccccCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG----------EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs----------~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~ 504 (969)
+.|..+++.+.++.....+ .++|+|||++|+.+. .++.|.+||..+++.+.......
T Consensus 51 v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~----------- 117 (373)
T 2mad_H 51 VLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD----------- 117 (373)
T ss_pred EEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC-----------
Confidence 4466677777778765555 999999999988876 36889999998877765432100
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC--CCcEEEEE
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM--DKTVRLWD 581 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~--DgtV~IWD 581 (969)
.. .+. +...-..+.|+| +++|+++.. ++.|.++|
T Consensus 118 ---------------------------------------~~---~~~-~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD 154 (373)
T 2mad_H 118 ---------------------------------------AP---RFD-VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred ---------------------------------------cc---ccc-cCCCccceEECCCCCEEEEEecCCCCeEEEEE
Confidence 00 000 012234788999 788888774 57899999
Q ss_pred CCCCcEEEE-eecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec------CCCC-EEEEEEccCCCEEEE
Q 002086 582 METKSCLKL-FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD------LHEM-VTAACYTPDGQNALI 653 (969)
Q Consensus 582 l~t~~~i~~-~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~------~~~~-V~sv~fspdg~~Las 653 (969)
.+++.+.. +..... +.+.|.....+++.+.||.+.++|. +++...... ...+ .....+.+++..++.
T Consensus 155 -~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 229 (373)
T 2mad_H 155 -QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred -CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEE
Confidence 99998887 654433 4555634567788889999999999 776653221 1122 233566777666655
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeeeccc----ccCCCCCeEEEEEcCCCCceEEEEe---------CCCcEEEEeCCcce
Q 002086 654 GSHKGSCRLYSIEDSKLHQLNQVDFQTK----KKSSTRKITGFQFSPSNPSEVLVTS---------ADSRIRILDGLDIV 720 (969)
Q Consensus 654 gs~dg~I~IwDl~~~~~~~~~~~~~~~~----~~~h~~~It~l~fspd~~~~l~sgs---------~Dg~I~IwD~~~~~ 720 (969)
.+..+.+.+.|+..........+.+... ..........+.++|++...+++.. ..+.|.++|..+..
T Consensus 230 ~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~ 309 (373)
T 2mad_H 230 PVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ 309 (373)
T ss_pred EcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE
Confidence 5578899999997654322222211110 0111233455789998844444332 23579999976544
Q ss_pred EEEEeecCCCCeEEEEEeCCCC-EEEEEe-CCCcEEEEEcCCCC
Q 002086 721 HKFRGFRNTSSQISAAFNADGK-YIISAS-EDSQVYVWKREEHR 762 (969)
Q Consensus 721 ~~~~~~~~~~~V~sl~fspdg~-~LaSgs-~Dg~I~IWdl~t~~ 762 (969)
..-... .......+.|+|||+ +|+++. .++.|.+||+.+.+
T Consensus 310 vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 310 TSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 433322 233567999999999 788877 48999999999854
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-10 Score=121.23 Aligned_cols=210 Identities=10% Similarity=-0.022 Sum_probs=154.3
Q ss_pred CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeee
Q 002086 462 DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFS 541 (969)
Q Consensus 462 Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 541 (969)
.+++|++++.|+.|.+||.++|+.+..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--------------------------------------------------- 32 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--------------------------------------------------- 32 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE---------------------------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC---------------------------------------------------
Confidence 46789999999999999998998876432
Q ss_pred cCCCceeEeccCC-CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeec--CCCeEEEEEecCCCCEEEEEEC-C
Q 002086 542 LSEKPFCSFIGHL-DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAH--NDYVTCIQFNPMDDDYFISGSL-D 616 (969)
Q Consensus 542 ~~~k~~~~l~gH~-~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h--~~~V~sv~fsp~~~~~L~sgs~-D 616 (969)
.+. ..+.++.+.| +++|+ +.++.|..||. +++.+..+.. ...+.++.+.+ +++++++.+. +
T Consensus 33 ----------~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~ 98 (276)
T 3no2_A 33 ----------LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGHP 98 (276)
T ss_dssp ----------CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEESTT
T ss_pred ----------CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCCC
Confidence 122 3456788888 66666 56788999999 8888888753 35788999999 9999999887 7
Q ss_pred CeEEEEeCCCceEEEEec-------CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCe
Q 002086 617 AKVRIWSISDRLVVDWTD-------LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI 689 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~-------~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I 689 (969)
+.|..+|. +++.+.... .......+++.++|+++++...++.|..||.. ++....... ...+
T Consensus 99 ~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~---------~~~~ 167 (276)
T 3no2_A 99 STILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL---------SGTP 167 (276)
T ss_dssp EEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC---------SSCC
T ss_pred CEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC---------CCCc
Confidence 88888887 454443222 11234566789999999999999999999998 776544321 1345
Q ss_pred EEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecC------CCCeEEEEEeCCCCEEEEEe
Q 002086 690 TGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRN------TSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 690 t~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~------~~~V~sl~fspdg~~LaSgs 748 (969)
.++.+.+++ ..++++..++.|..+|..+.....+.... ...+..+...++|.++++..
T Consensus 168 ~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 168 FSSAFLDNG-DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEECTTS-CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred cceeEcCCC-CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 567778877 67777788889999997654444443221 22367888899999988874
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-09 Score=117.28 Aligned_cols=199 Identities=8% Similarity=0.157 Sum_probs=143.7
Q ss_pred ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-------cCCCeEEEEEecCCCCEEEEEEC-CCeEEE
Q 002086 551 IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA-------HNDYVTCIQFNPMDDDYFISGSL-DAKVRI 621 (969)
Q Consensus 551 ~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-------h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~I 621 (969)
.+|...+.++++++ +.++++...++.|.+||.. ++.+..+. +...+.++++.+.++.++++... ++.|++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 35667899999998 7777777889999999987 66666653 33578999995425555555533 899999
Q ss_pred EeCCCceEEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 622 WSISDRLVVDWTD--LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 622 WDl~~~~~~~~~~--~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
||. +++.+.... ....+..++++++|+++++...++.|.+||.... ...... ...+...+.++++++++
T Consensus 105 ~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~------~~~~~~~p~~i~~~~~g- 175 (286)
T 1q7f_A 105 YNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFG------CSKHLEFPNGVVVNDKQ- 175 (286)
T ss_dssp ECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEE------CTTTCSSEEEEEECSSS-
T ss_pred ECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEeC------CCCccCCcEEEEECCCC-
Confidence 994 555554443 2356899999999998888778899999997543 222111 01344568999999987
Q ss_pred ceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEEcC
Q 002086 700 SEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDS-QVYVWKRE 759 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg-~I~IWdl~ 759 (969)
.++++...++.|++||.... ...+....+...+..++++++|.++++...++ .|.+|+..
T Consensus 176 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred CEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 66777778999999996432 22222222235678999999999999888886 99999964
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.3e-10 Score=123.61 Aligned_cols=220 Identities=8% Similarity=0.079 Sum_probs=154.0
Q ss_pred ccccceeeeEec-ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce-EEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 437 DLSALHLCQEIQ-AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE-VMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 437 dl~~~~l~~~L~-gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
+..+.+++..+. ++-....+|+++++|+++++...++.|++||..... .+..+..... .+
T Consensus 75 d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~----------------~g-- 136 (329)
T 3fvz_A 75 DPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ----------------PG-- 136 (329)
T ss_dssp CTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB----------------CC--
T ss_pred ECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC----------------CC--
Confidence 333344444443 556689999999999999999889999999976431 1211110000 00
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEe-CCCcEEEEECCCCcEEEEe
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSS-MDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs-~DgtV~IWDl~t~~~i~~~ 591 (969)
.-.++......|++++ +.++++.+ .++.|++|| ..+..+..+
T Consensus 137 ----------------------------------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 137 ----------------------------------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp ----------------------------------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred ----------------------------------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 0013455688999998 45666665 599999999 567777776
Q ss_pred ec-----------CCCeEEEEEecCC-CCEEEEEECCCeEEEEeCCCceEEEEec---CCCCEEEEEEccCCCEEEE---
Q 002086 592 AH-----------NDYVTCIQFNPMD-DDYFISGSLDAKVRIWSISDRLVVDWTD---LHEMVTAACYTPDGQNALI--- 653 (969)
Q Consensus 592 ~h-----------~~~V~sv~fsp~~-~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---~~~~V~sv~fspdg~~Las--- 653 (969)
+. -.....|+++| + +.++++...++.|++||..+++.+.... +...+..++|+| +..+++
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence 32 23489999999 6 7777888889999999999777766553 346788999999 333333
Q ss_pred ----EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 654 ----GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 654 ----gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
...+..|++|++.+++...... ....+...+..|+++|++ .++++...++.|++|+..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~-----~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFK-----PVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEEC-----CSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEc-----CCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCC
Confidence 3345589999999888654421 113566778999999998 788888899999999843
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-09 Score=128.72 Aligned_cols=258 Identities=11% Similarity=0.135 Sum_probs=177.6
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecc--cceEEEeecCCccCcccccccCCCCCccCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQ--ECEVMSMSEGNLTPIHPSLCNSSDKASSLDG 512 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~--tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g 512 (969)
+.|..+.+.+.++... ..+..+.|+|||++|++++.|+.|.+||+. +++.+..+
T Consensus 181 viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i----------------------- 236 (567)
T 1qks_A 181 LIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI----------------------- 236 (567)
T ss_dssp EEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE-----------------------
T ss_pred EEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE-----------------------
Confidence 3466666777777643 356799999999999999999999999995 55554321
Q ss_pred CCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEec----C-CcEEEEEe-CCCcEEEEECCCCc
Q 002086 513 SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS----R-SHLLLSSS-MDKTVRLWDMETKS 586 (969)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs----~-~~~L~Sgs-~DgtV~IWDl~t~~ 586 (969)
.. ......++|+ | +++++++. .+++|.|+|..+.+
T Consensus 237 --------------------------------------~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 237 --------------------------------------KI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 277 (567)
T ss_dssp --------------------------------------EC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred --------------------------------------ec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence 11 1224678999 5 66766665 56999999999999
Q ss_pred EEEEee-----------cCC-CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE--EEEecCCCCEEEEEEccCCCEEE
Q 002086 587 CLKLFA-----------HND-YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV--VDWTDLHEMVTAACYTPDGQNAL 652 (969)
Q Consensus 587 ~i~~~~-----------h~~-~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~~~~~~V~sv~fspdg~~La 652 (969)
.+..+. |.. .+..+.+++....+++....+|.|.++|...... +...........+.|+|+|++|+
T Consensus 278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~ 357 (567)
T 1qks_A 278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI 357 (567)
T ss_dssp EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEE
T ss_pred EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEE
Confidence 988763 112 6788888883344566666779999999987532 23334455678899999999988
Q ss_pred EEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCc---------ceE
Q 002086 653 IGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLD---------IVH 721 (969)
Q Consensus 653 sgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~---------~~~ 721 (969)
++. .++.|.++|+.++++.....+ . ....|.+.-..+ ++|++...++++. .++.|.++|... .+.
T Consensus 358 va~~~sn~V~ViD~~t~kl~~~i~v--g-g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 358 TAANARNKLVVIDTKEGKLVAIEDT--G-GQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEEC--S-SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred EEeCCCCeEEEEECCCCcEEEEEec--c-CcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence 766 578999999999886544321 0 123444322223 6787645555554 568999999654 233
Q ss_pred EEEeecCCCCeEEEEEeCCCCEEEEEeC-------CCcEEEEEcCCC
Q 002086 722 KFRGFRNTSSQISAAFNADGKYIISASE-------DSQVYVWKREEH 761 (969)
Q Consensus 722 ~~~~~~~~~~V~sl~fspdg~~LaSgs~-------Dg~I~IWdl~t~ 761 (969)
.+... ...-..+.++|++++|..... .+.|.++|+.+.
T Consensus 434 ~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 434 SFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 33322 122234678999999998773 359999999874
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-08 Score=109.00 Aligned_cols=239 Identities=7% Similarity=0.015 Sum_probs=171.0
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
......+.+|++.++|+++++...++.|.+||.. ++....
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~--------------------------------------- 55 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF--------------------------------------- 55 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE---------------------------------------
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE---------------------------------------
Confidence 3456789999999999988887778999999977 544321
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEec
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNP 604 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp 604 (969)
.+..+...+.++++.+ +.++++...++.|..||.. ++..... .....+.++++.+
T Consensus 56 ---------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~ 113 (300)
T 2qc5_A 56 ---------------------EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL 113 (300)
T ss_dssp ---------------------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS
T ss_pred ---------------------ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC
Confidence 0111234577888888 5666666667899999988 6654322 2346789999998
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVDWTD--LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~--~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
++.++++...++.|..||.. ++...... ....+..+++.++|+++++...++.|..||. +++.... . .
T Consensus 114 -~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~------~ 183 (300)
T 2qc5_A 114 -NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEY-P------L 183 (300)
T ss_dssp -TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-E------C
T ss_pred -CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEe-e------C
Confidence 78888877778899999998 65554322 3456899999999996666666789999998 5544321 1 1
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
......+.++++.+++ .++++....+.|.+|+.......+........+.+++++++|.+.++...++.|.+|+..
T Consensus 184 ~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 184 PTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp SSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 2334578899999987 566665667789999974333333333344567899999999977777677899999873
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-10 Score=139.96 Aligned_cols=239 Identities=13% Similarity=0.091 Sum_probs=157.3
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCC-----CcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 449 AHEGSIWTIKFSLDARFLASAGED-----RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~D-----gtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+|...+..++|||||++||.++.+ .+|++||+.+++.+...
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~---------------------------------- 205 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE---------------------------------- 205 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE----------------------------------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc----------------------------------
Confidence 455678999999999999887654 46999999988764310
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCc--------------EEEEECCCCcE--
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKT--------------VRLWDMETKSC-- 587 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~Dgt--------------V~IWDl~t~~~-- 587 (969)
+ +...+..++|+|++.|+.++.++. |++|++.++..
T Consensus 206 --------------------------~--~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~ 257 (741)
T 1yr2_A 206 --------------------------L--KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD 257 (741)
T ss_dssp --------------------------E--EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGC
T ss_pred --------------------------C--CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC
Confidence 0 001123567887666666666544 99999988762
Q ss_pred EEEee---cCCCeEEEEEecCCCCEEEEEECCC-----eEEEEeCCCc--e-EEEEecCCCCEEEEEEccCCCEEEEEeC
Q 002086 588 LKLFA---HNDYVTCIQFNPMDDDYFISGSLDA-----KVRIWSISDR--L-VVDWTDLHEMVTAACYTPDGQNALIGSH 656 (969)
Q Consensus 588 i~~~~---h~~~V~sv~fsp~~~~~L~sgs~Dg-----~I~IWDl~~~--~-~~~~~~~~~~V~sv~fspdg~~Lasgs~ 656 (969)
..++. +...+..+.|+| ++.+|+..+.++ .|++||+.++ + ...+..+...+.... +|+|+.|+..+.
T Consensus 258 ~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~ 335 (741)
T 1yr2_A 258 QPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSG 335 (741)
T ss_dssp EEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEEC
T ss_pred EEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEEC
Confidence 23332 334689999999 999888777544 8999999877 5 556655555555443 489998888776
Q ss_pred C----CcEEEEEcCCCc--eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe--CCcc-eEEEEeec
Q 002086 657 K----GSCRLYSIEDSK--LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDI-VHKFRGFR 727 (969)
Q Consensus 657 d----g~I~IwDl~~~~--~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD--~~~~-~~~~~~~~ 727 (969)
+ +.|.+||+.++. ..... ..+...+..+.+. +..++++...|+..+||. .... ...+. ..
T Consensus 336 ~~~~~~~l~~~d~~~~~~~~~~l~--------~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-~~ 404 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGSTPRFDTVV--------PESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVS-LP 404 (741)
T ss_dssp TTCTTCEEEEEECSSSSCEEEEEE--------CCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECB-CS
T ss_pred CCCCCCEEEEEeCCCCccccEEEe--------cCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeecc-CC
Confidence 4 459999998742 21111 2233456677777 336788888888877664 3222 22211 22
Q ss_pred CCCCeEEEEEeCCCCEEEEE-e---CCCcEEEEEcCCCC
Q 002086 728 NTSSQISAAFNADGKYIISA-S---EDSQVYVWKREEHR 762 (969)
Q Consensus 728 ~~~~V~sl~fspdg~~LaSg-s---~Dg~I~IWdl~t~~ 762 (969)
....+..++++|+++.|+.. + ..+.|++||+.+++
T Consensus 405 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 405 GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 35667889999998766532 2 34789999998753
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-09 Score=120.50 Aligned_cols=214 Identities=9% Similarity=0.011 Sum_probs=151.8
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
|..+++.+.++. .......|+++++++++++...++.|.+||..+++....+.....
T Consensus 70 D~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~---------------------- 126 (328)
T 3dsm_A 70 DINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM---------------------- 126 (328)
T ss_dssp ETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC----------------------
T ss_pred ECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc----------------------
Confidence 555566666664 346789999999996666655899999999999887654321100
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEe--CCCcEEEEECCCCcEEEEeecC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSS--MDKTVRLWDMETKSCLKLFAHN 594 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs--~DgtV~IWDl~t~~~i~~~~h~ 594 (969)
.++......+++ .+..|+.+. .++.|.+||+.+++.+..+...
T Consensus 127 ----------------------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 127 ----------------------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp ----------------------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred ----------------------------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence 001112223444 334444444 4899999999999998888666
Q ss_pred CCeEEEEEecCCCCEEEEEECC----------CeEEEEeCCCceEEEEecC--CCCEEEEEEccCCCEEEEEeCCCcEEE
Q 002086 595 DYVTCIQFNPMDDDYFISGSLD----------AKVRIWSISDRLVVDWTDL--HEMVTAACYTPDGQNALIGSHKGSCRL 662 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~D----------g~I~IWDl~~~~~~~~~~~--~~~V~sv~fspdg~~Lasgs~dg~I~I 662 (969)
.....++++| ++++++++..+ +.|.+||..++++...... ...+..++|+|+++.|+++.. .|.+
T Consensus 172 ~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~ 248 (328)
T 3dsm_A 172 IQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWR 248 (328)
T ss_dssp SCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEE
T ss_pred CCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEE
Confidence 6678899998 78777776554 7899999999987765543 346899999999999888765 8999
Q ss_pred EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE----eCCCcEEEEeCC
Q 002086 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT----SADSRIRILDGL 717 (969)
Q Consensus 663 wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg----s~Dg~I~IwD~~ 717 (969)
||+.+++......+ ........+++++|++..++++. ..++.|.+||..
T Consensus 249 ~d~~t~~~~~~~~~------~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 249 MPVEADRVPVRPFL------EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EETTCSSCCSSCSB------CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EECCCCceeeeeee------cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99988775321100 11246788999999765666666 678899999965
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-08 Score=105.55 Aligned_cols=236 Identities=5% Similarity=0.039 Sum_probs=164.7
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.+...+.+|++.++|+++++...++.|.+||.. ++....
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~---------------------------------------- 97 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY---------------------------------------- 97 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE----------------------------------------
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe----------------------------------------
Confidence 445789999999999988887778889999877 543221
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPM 605 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~ 605 (969)
.+......+.++++.+ +.++++...++.|..||.. ++..... .....+.++++.+
T Consensus 98 --------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~- 155 (300)
T 2qc5_A 98 --------------------PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS- 155 (300)
T ss_dssp --------------------ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-
T ss_pred --------------------cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-
Confidence 0111224577888887 6666666668899999998 6655332 2456789999998
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
+++++++...++.|..||. +++...+. .....+..+++.++|.++++....+.|.+|+. ++...... ..
T Consensus 156 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-------~~ 226 (300)
T 2qc5_A 156 DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-------IP 226 (300)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-------CS
T ss_pred CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-------CC
Confidence 7887777666889999998 55554432 23356899999999987777667788999998 44432211 12
Q ss_pred CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 684 SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 684 ~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.....+.++++.+++ .++++...++.|..|+.......+........+.+++++++|.+.++.. . .|..++.+
T Consensus 227 ~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 227 TPNARPHAITAGKNS-EIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp STTCCEEEEEECSTT-CEEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CCCCCceEEEECCCC-CEEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 345678999999987 5555555678999999754444443333345578899999998666655 4 77777653
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.8e-09 Score=113.39 Aligned_cols=197 Identities=11% Similarity=0.029 Sum_probs=142.0
Q ss_pred ceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 546 PFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.+..+..+.....+++|++ ++ +++++..++.|..||..++ ......+...+.++++++ ++.++++...++.|.+||
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEEC
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEc
Confidence 3345666777889999998 55 7888889999999999988 333335677899999999 888887777778999999
Q ss_pred CCCceEEEEecC-----CCCEEEEEEccCCCEEEEE----e-------------CCCcEEEEEcCCCceeeeeeeeeccc
Q 002086 624 ISDRLVVDWTDL-----HEMVTAACYTPDGQNALIG----S-------------HKGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 624 l~~~~~~~~~~~-----~~~V~sv~fspdg~~Lasg----s-------------~dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
..+++...+... ...+..++++|+|+++++. + ..+.|..++.. ++....
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-------- 167 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP-------- 167 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE--------
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe--------
Confidence 988776554322 1346679999999988873 3 13456666554 332211
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC-c--c---eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL-D--I---VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~-~--~---~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
..+......++|+|++ ..+++.+.++.|++|+.. . . ...+ ......+..++++++|+++++. ++.|.+
T Consensus 168 -~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~ 241 (296)
T 3e5z_A 168 -IRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHV 241 (296)
T ss_dssp -ECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEE
T ss_pred -ecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEE
Confidence 2344567899999998 555777888999999964 2 1 1222 2234456689999999877766 889999
Q ss_pred EEcC
Q 002086 756 WKRE 759 (969)
Q Consensus 756 Wdl~ 759 (969)
|+.+
T Consensus 242 ~~~~ 245 (296)
T 3e5z_A 242 LTPD 245 (296)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 9976
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-08 Score=116.90 Aligned_cols=243 Identities=12% Similarity=0.111 Sum_probs=164.4
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
-.....|+|+++++++++...++.|++||..++++.....
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~---------------------------------------- 169 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP---------------------------------------- 169 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec----------------------------------------
Confidence 3468899999999988888888999999998776644211
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC--cEEEEECCCCcEEEEe----e-cCCCeEEEEE
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK--TVRLWDMETKSCLKLF----A-HNDYVTCIQF 602 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg--tV~IWDl~t~~~i~~~----~-h~~~V~sv~f 602 (969)
. ..... ++|++ ++.|+++..++ .|.+|+...+.....+ . ....+.++++
T Consensus 170 ---------------------~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav 226 (409)
T 3hrp_A 170 ---------------------G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVAL 226 (409)
T ss_dssp ---------------------T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEE
T ss_pred ---------------------c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEE
Confidence 0 11122 77888 67888888766 7999998876654444 3 4567889999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCceEEEE----ec-CCCCE-E-EEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDW----TD-LHEMV-T-AACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 603 sp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~----~~-~~~~V-~-sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
+| ++..|+.+..++.|+.||..++....+ .. ..... . .++|+|+ +.++++-..++.|+.|+...... ...
T Consensus 227 ~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~-~~~ 304 (409)
T 3hrp_A 227 DE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE-WFC 304 (409)
T ss_dssp CT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEE
T ss_pred eC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE-EEE
Confidence 99 566666677789999999987764443 11 11111 3 8999995 55555566788999999865421 110
Q ss_pred eee-ecc-----cccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCc-ceEEEEeec-------------CCCCeE
Q 002086 675 QVD-FQT-----KKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLD-IVHKFRGFR-------------NTSSQI 733 (969)
Q Consensus 675 ~~~-~~~-----~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~-~~~~~~~~~-------------~~~~V~ 733 (969)
... ... ...........+++++++ .++++-. .++.|+.|+... ....+.+.. ......
T Consensus 305 g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~ 383 (409)
T 3hrp_A 305 GSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPY 383 (409)
T ss_dssp ECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEE
T ss_pred eCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCce
Confidence 000 000 000113457899999998 5666767 789999999443 333333321 023578
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 734 SAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 734 sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.++++++|.++++-..++.|+.++++
T Consensus 384 giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 384 DICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 89999998888888888889888763
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-09 Score=114.25 Aligned_cols=190 Identities=12% Similarity=0.080 Sum_probs=142.6
Q ss_pred cCCcEEEEEeCCCcEEEEECCCCcEEEEeecC--CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--CC
Q 002086 563 SRSHLLLSSSMDKTVRLWDMETKSCLKLFAHN--DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--EM 638 (969)
Q Consensus 563 s~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~--~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--~~ 638 (969)
+|+++|++++.|+.|.+||.++++.+..+... ..+.++.+.| ++++|+ +.++.|+.||. +++++..+... ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 46899999999999999999999999888543 4789999999 888888 45788999999 67666554433 46
Q ss_pred EEEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 639 VTAACYTPDGQNALIGSH-KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 639 V~sv~fspdg~~Lasgs~-dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
+.++.+.++|+++++.+. ++.|..+|. +++.+....+. .....+......+.+.+++ .++++...++.|..||..
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~--~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFE--TGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEEC--CSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTT
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEecc--CCCCcccccccCceECCCC-CEEEEecCCCEEEEECCC
Confidence 889999999999999887 788888886 55554433321 1111122234455778887 788888999999999976
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
......... .....++.+.++|.+|++++.++.|..+|..+++
T Consensus 155 -G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 155 -GQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp -SCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred -CCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 444333322 2345577889999999999988899999998844
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.4e-09 Score=122.98 Aligned_cols=197 Identities=12% Similarity=0.119 Sum_probs=150.3
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC--CceEEEEecCCCCEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS--DRLVVDWTDLHEMVTAA 642 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~--~~~~~~~~~~~~~V~sv 642 (969)
+.++++...+++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+. +.+++...........+
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~i 245 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 245 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCcee
Confidence 3566777889999999999999999988777888999999 99999999999999999995 77776666656668899
Q ss_pred EEc----cCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeeeccc--ccCC-CCCeEEEEEcCCCCceEEEEeCCCcEEEE
Q 002086 643 CYT----PDGQNALIGSH-KGSCRLYSIEDSKLHQLNQVDFQTK--KKSS-TRKITGFQFSPSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 643 ~fs----pdg~~Lasgs~-dg~I~IwDl~~~~~~~~~~~~~~~~--~~~h-~~~It~l~fspd~~~~l~sgs~Dg~I~Iw 714 (969)
+|+ |+|++++++.. ++.|.|+|..+.+........-... ...| ...+..+.++++++.+++....+|.|.++
T Consensus 246 a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v 325 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 325 (567)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence 999 69999887664 5899999999888765433211000 0011 23688899999887777777888999999
Q ss_pred eCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCCC
Q 002086 715 DGLDIV-HKFRGFRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREEHR 762 (969)
Q Consensus 715 D~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t~~ 762 (969)
|..... ..............+.|+|||++|++++ .++.|.++|+.+++
T Consensus 326 d~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 326 DYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp ETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred ecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 966432 1122223334566889999999987766 57889999999843
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=8.9e-09 Score=126.75 Aligned_cols=201 Identities=8% Similarity=0.028 Sum_probs=137.3
Q ss_pred cCCCCEEEEEecC-CcEEEEEeCCC-----cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCe-------
Q 002086 552 GHLDDVLDLSWSR-SHLLLSSSMDK-----TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAK------- 618 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~Sgs~Dg-----tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~------- 618 (969)
+|...+..++|+| +++|+.++.++ +|++||+.+++.+........+..++|+| +++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCcccccccc
Confidence 3555688999999 78887766543 89999999999876442223377899999 9999999888766
Q ss_pred ---------EEEEeCCCce---EEEEec--CCCCEEEEEEccCCCEEEEEeC-----CCcEEEEEcCC------Cceeee
Q 002086 619 ---------VRIWSISDRL---VVDWTD--LHEMVTAACYTPDGQNALIGSH-----KGSCRLYSIED------SKLHQL 673 (969)
Q Consensus 619 ---------I~IWDl~~~~---~~~~~~--~~~~V~sv~fspdg~~Lasgs~-----dg~I~IwDl~~------~~~~~~ 673 (969)
|++|++.+++ .+.... +...+..+.|+|||++|+.++. +..|++||+.+ +... .
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~ 279 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK-W 279 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC-C
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc-e
Confidence 9999998765 222222 3455789999999999988765 56899999976 4210 0
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC---CcEEEEeCCcce----EEEEeecCCCCeEEEEEeCCCCEEEE
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD---SRIRILDGLDIV----HKFRGFRNTSSQISAAFNADGKYIIS 746 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D---g~I~IwD~~~~~----~~~~~~~~~~~V~sl~fspdg~~LaS 746 (969)
..+ ..+...+.. .|+|++..+++.+..+ +.|++||..... ..+..+.....+..++|++++.++++
T Consensus 280 ~~l------~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 280 VKL------IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (710)
T ss_dssp EEE------ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred EEe------eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence 111 122333443 4788885455554433 369999976532 33333333235778999988888899
Q ss_pred EeCCCc--EEEEEcCCC
Q 002086 747 ASEDSQ--VYVWKREEH 761 (969)
Q Consensus 747 gs~Dg~--I~IWdl~t~ 761 (969)
...|+. |++|++.++
T Consensus 353 ~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATG 369 (710)
T ss_dssp EEETTEEEEEEEETTTC
T ss_pred EEECCEEEEEEEECCCC
Confidence 988985 566676553
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-08 Score=109.49 Aligned_cols=235 Identities=9% Similarity=0.075 Sum_probs=155.7
Q ss_pred eEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 445 QEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
..|..+.....+..|+++|+ ++++...++.|..|+. +++..
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~------------------------------------- 79 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD------------------------------------- 79 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-------------------------------------
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-------------------------------------
Confidence 34455666778999999998 6777778899999987 33321
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeec-----CCCe
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAH-----NDYV 597 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h-----~~~V 597 (969)
.+..+...+..+++.+ ++++++...++.|.+|+.. ++......+ ...+
T Consensus 80 -------------------------~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~ 133 (305)
T 3dr2_A 80 -------------------------VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSP 133 (305)
T ss_dssp -------------------------EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCC
T ss_pred -------------------------EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCC
Confidence 1223445678899998 5555444456889999986 664443321 2356
Q ss_pred EEEEEecCCCCEEEE----EEC-------------CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC---
Q 002086 598 TCIQFNPMDDDYFIS----GSL-------------DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK--- 657 (969)
Q Consensus 598 ~sv~fsp~~~~~L~s----gs~-------------Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d--- 657 (969)
..+++.+ ++.++++ |.. .+.|..||..++++.... .......++|+|+++.|+++...
T Consensus 134 ~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~ 211 (305)
T 3dr2_A 134 NDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQG 211 (305)
T ss_dssp CCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC--
T ss_pred CCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcC
Confidence 7899999 8888886 332 256888888777655544 44567889999999988877665
Q ss_pred ---CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeE
Q 002086 658 ---GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQI 733 (969)
Q Consensus 658 ---g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~ 733 (969)
+.|.+|++....+.....+ . .........+++.+++ . |.++..+ .|.+|+.... ...+.. ...+.
T Consensus 212 ~~~~~i~~~~~~~~~l~~~~~~-~----~~~~~~pdgi~~d~~G-~-lwv~~~~-gv~~~~~~g~~~~~~~~---~~~~~ 280 (305)
T 3dr2_A 212 HGSVEITAFAWRDGALHDRRHF-A----SVPDGLPDGFCVDRGG-W-LWSSSGT-GVCVFDSDGQLLGHIPT---PGTAS 280 (305)
T ss_dssp -CCCEEEEEEEETTEEEEEEEE-E----CCSSSCCCSEEECTTS-C-EEECCSS-EEEEECTTSCEEEEEEC---SSCCC
T ss_pred CCCCEEEEEEecCCCccCCeEE-E----ECCCCCCCeEEECCCC-C-EEEecCC-cEEEECCCCCEEEEEEC---CCcee
Confidence 7899999876552111111 1 1123345678899988 4 5555544 5999996432 222222 22478
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 734 SAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 734 sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
+++|+++++.|..++.++ |+.++
T Consensus 281 ~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 281 NCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp EEEECTTSCEEEEEETTE-EEEEE
T ss_pred EEEEeCCCCEEEEEcCCe-EEEEE
Confidence 899999999888888754 44444
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.10 E-value=7.3e-08 Score=105.18 Aligned_cols=232 Identities=10% Similarity=0.045 Sum_probs=151.4
Q ss_pred ecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCC
Q 002086 447 IQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKG 525 (969)
Q Consensus 447 L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 525 (969)
+..+..---+..|+++ +.++++...++.|..||..+++...
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-------------------------------------- 49 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-------------------------------------- 49 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------------------------
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------------------------
Confidence 3344455668899995 4566777778999999988654321
Q ss_pred CCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeec-----CCCeEE
Q 002086 526 KHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAH-----NDYVTC 599 (969)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h-----~~~V~s 599 (969)
+ .....+.++++++ ++ |+.+. ++.|.+||..+++....... ...+..
T Consensus 50 ------------------------~-~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~d 102 (297)
T 3g4e_A 50 ------------------------V-TMDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFND 102 (297)
T ss_dssp ------------------------E-ECSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEE
T ss_pred ------------------------E-eCCCceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCC
Confidence 0 1234678899998 55 44454 56899999998876554432 235789
Q ss_pred EEEecCCCCEEEEEEC-----------CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEEc--
Q 002086 600 IQFNPMDDDYFISGSL-----------DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALI-GSHKGSCRLYSI-- 665 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~-----------Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Las-gs~dg~I~IwDl-- 665 (969)
++++| +++++++... .+.|..++.. +..............++|+|+++.|++ .+.++.|.+|++
T Consensus 103 i~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~ 180 (297)
T 3g4e_A 103 GKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL 180 (297)
T ss_dssp EEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECT
T ss_pred EEECC-CCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccC
Confidence 99999 8887665432 2345555543 444444444456789999999987754 556789999997
Q ss_pred CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe-CCCCEE
Q 002086 666 EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN-ADGKYI 744 (969)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs-pdg~~L 744 (969)
.++.+.....+ ............+++.+++ .++++....+.|.+||..+.............+++++|. ||++.|
T Consensus 181 ~~G~~~~~~~~---~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L 256 (297)
T 3g4e_A 181 QTGQISNRRSV---YKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEM 256 (297)
T ss_dssp TTCCEEEEEEE---EECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEE
T ss_pred CCCcccCcEEE---EECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEE
Confidence 45543221111 0111223567889999988 677777778889999976333222223334568999998 888877
Q ss_pred EEEeC
Q 002086 745 ISASE 749 (969)
Q Consensus 745 aSgs~ 749 (969)
+.++.
T Consensus 257 ~vt~~ 261 (297)
T 3g4e_A 257 YVTCA 261 (297)
T ss_dssp EEEEB
T ss_pred EEEcC
Confidence 65554
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-08 Score=115.27 Aligned_cols=267 Identities=15% Similarity=0.067 Sum_probs=169.7
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEe----------CCCcEEEEecccceEEEeecCCccCcccccccCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG----------EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs----------~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~ 504 (969)
+.|..+++.+.++..-..+ .++++|||++|+.+. .++.|.+||..+++.+..+.....
T Consensus 63 ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g---------- 130 (386)
T 3sjl_D 63 VIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA---------- 130 (386)
T ss_dssp EEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC----------
T ss_pred EEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc----------
Confidence 4477778888888866666 499999999887765 367899999999888764321000
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC--CCcEEEEE
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM--DKTVRLWD 581 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~--DgtV~IWD 581 (969)
+. . .....-..+.|+| +++|+++.. ++.|.++|
T Consensus 131 ----------------------------------------~r---~-~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID 166 (386)
T 3sjl_D 131 ----------------------------------------PR---F-LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVD 166 (386)
T ss_dssp ----------------------------------------CC---C-CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred ----------------------------------------cc---c-ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEE
Confidence 00 0 0011223588898 778777764 68999999
Q ss_pred CCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-ceEEEEec-CC----CCEE-EEEEc-cCCCEEEE
Q 002086 582 METKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-RLVVDWTD-LH----EMVT-AACYT-PDGQNALI 653 (969)
Q Consensus 582 l~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-~~~~~~~~-~~----~~V~-sv~fs-pdg~~Las 653 (969)
+.+++.+..+.-.+. ..+.|.....|++.+.||++.+.++.. +++..... .. ..+. ...|. ++|++++
T Consensus 167 ~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~- 242 (386)
T 3sjl_D 167 LEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW- 242 (386)
T ss_dssp TTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-
T ss_pred CCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-
Confidence 999999988854332 223353567888999999999999976 55432111 11 1221 24554 5775444
Q ss_pred EeCCCcEEEEEcCCCceeeeeeeeecc----cccCCCCCeEEEEEcCCCCceEEEEeC---------CCcEEEEeCCcce
Q 002086 654 GSHKGSCRLYSIEDSKLHQLNQVDFQT----KKKSSTRKITGFQFSPSNPSEVLVTSA---------DSRIRILDGLDIV 720 (969)
Q Consensus 654 gs~dg~I~IwDl~~~~~~~~~~~~~~~----~~~~h~~~It~l~fspd~~~~l~sgs~---------Dg~I~IwD~~~~~ 720 (969)
.+.+|.|++.|+.+........+.+.. ........+..+++++++...+++... ...|.++|..+..
T Consensus 243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 566899999999876543222222100 011112334457778888444444321 2569999976544
Q ss_pred EEEEeecCCCCeEEEEEeCCCC-EEEEEe-CCCcEEEEEcCCCC
Q 002086 721 HKFRGFRNTSSQISAAFNADGK-YIISAS-EDSQVYVWKREEHR 762 (969)
Q Consensus 721 ~~~~~~~~~~~V~sl~fspdg~-~LaSgs-~Dg~I~IWdl~t~~ 762 (969)
....... ...+..|.|++|++ +|++.. .++.|.++|..+++
T Consensus 323 v~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 323 RLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 3322221 22567899999997 666654 58999999999843
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-07 Score=105.44 Aligned_cols=226 Identities=11% Similarity=-0.016 Sum_probs=146.4
Q ss_pred CEEEEEEeCCC-CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 453 SIWTIKFSLDA-RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 453 ~I~~l~fSpDg-~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
-..+..|+|++ .++++...++.|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-------------------------------------------- 85 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-------------------------------------------- 85 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------------------------------
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------------------------------
Confidence 34678899975 466677678899999988765321
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeec-----CCCeEEEEEecCC
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAH-----NDYVTCIQFNPMD 606 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h-----~~~V~sv~fsp~~ 606 (969)
+ .+...+.++.|.++..++.++.+ .|.+||..+++....... ...+.+++++| +
T Consensus 86 ------------------~-~~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~ 144 (326)
T 2ghs_A 86 ------------------H-ALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-S 144 (326)
T ss_dssp ------------------E-ECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-T
T ss_pred ------------------E-ECCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-C
Confidence 0 01246788999884444445544 499999998887554422 23588999999 8
Q ss_pred CCEEEEEEC------CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcC--CC-ceeeeeee
Q 002086 607 DDYFISGSL------DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIG-SHKGSCRLYSIE--DS-KLHQLNQV 676 (969)
Q Consensus 607 ~~~L~sgs~------Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasg-s~dg~I~IwDl~--~~-~~~~~~~~ 676 (969)
++++++... .+.|..++ ++++..+.........++|+|+++.++++ +.++.|.+|++. ++ .......+
T Consensus 145 G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~ 222 (326)
T 2ghs_A 145 GALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF 222 (326)
T ss_dssp SCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE
T ss_pred CCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEE
Confidence 887665542 25566666 56555444434557899999999877655 457899999986 44 32111111
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe-CCCCEEEEEeCC
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN-ADGKYIISASED 750 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs-pdg~~LaSgs~D 750 (969)
.........+..+++.+++ .++++...++.|.+|+..... ..........+.+++|+ ++++.|+.++..
T Consensus 223 ---~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~g~~-~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 223 ---IDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTDGNH-IARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ---EECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTTCCE-EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ---EECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCCCCE-EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 0011223456789999988 566666667899999974322 11222233468899998 888877655543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-09 Score=121.32 Aligned_cols=188 Identities=11% Similarity=0.036 Sum_probs=134.1
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
.++.|++++...+|++|+.|+ ++||++.......... . +.
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~-~-------------------~~------------------- 78 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD-S-------------------TP------------------- 78 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS-S-------------------CC-------------------
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc-c-------------------cc-------------------
Confidence 689999999999999999986 5669987532100000 0 00
Q ss_pred ccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEE-eecCCCeEEEEEecCCCCEEE
Q 002086 533 VHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKL-FAHNDYVTCIQFNPMDDDYFI 611 (969)
Q Consensus 533 ~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~-~~h~~~V~sv~fsp~~~~~L~ 611 (969)
.++. ....+.+ |+.|+| .+..|+++ .++.|++||+.+...... ..|...+.++.+.+ . .++
T Consensus 79 -----------~~~~-~~~~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~a 140 (388)
T 1xip_A 79 -----------LTFK-WEKEIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLV 140 (388)
T ss_dssp -----------CCCS-EEEECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEE
T ss_pred -----------ccce-EEeeCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEE
Confidence 0011 1223556 999999 77888888 889999999987664443 36788898888876 2 388
Q ss_pred EEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc---cCCCCC
Q 002086 612 SGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK---KSSTRK 688 (969)
Q Consensus 612 sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~---~~h~~~ 688 (969)
++..||.|.+||+.++.... +...|+|++|+|+| +++|..||.+++|+...........+...... ..|...
T Consensus 141 v~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~ 215 (388)
T 1xip_A 141 ILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS 215 (388)
T ss_dssp EEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE
T ss_pred EEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCee
Confidence 89999999999999877654 34679999999999 78899999999999887764211112111111 246789
Q ss_pred eEEEEEcCCCCceEEE
Q 002086 689 ITGFQFSPSNPSEVLV 704 (969)
Q Consensus 689 It~l~fspd~~~~l~s 704 (969)
|.+|.|.+++ .++++
T Consensus 216 V~sI~wl~~~-~flv~ 230 (388)
T 1xip_A 216 PLSVTILSPQ-DFLAV 230 (388)
T ss_dssp EEEEEESSSS-EEEEE
T ss_pred EEEEEEecCC-eEEEE
Confidence 9999999976 45554
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-08 Score=110.36 Aligned_cols=248 Identities=13% Similarity=0.095 Sum_probs=157.8
Q ss_pred cCEEEEEEeCCCCEEEEEe--CCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 452 GSIWTIKFSLDARFLASAG--EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs--~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
..+..|+++++|+++++.. .++.++||.+.++++.. +... .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~-~p~~------------~------------------------ 59 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIP-FPPQ------------S------------------------ 59 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEE-SCCC------------C------------------------
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeec-CCCc------------c------------------------
Confidence 7899999999999999864 23446777765554321 1000 0
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEe-C-----CCcEEEEECCCCcEEEEeec-------CCC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSS-M-----DKTVRLWDMETKSCLKLFAH-------NDY 596 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs-~-----DgtV~IWDl~t~~~i~~~~h-------~~~ 596 (969)
....+|...+.++++.+...|+... . ++.|.+||+.+++.+..+.. ...
T Consensus 60 ------------------~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~ 121 (343)
T 2qe8_A 60 ------------------GNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSF 121 (343)
T ss_dssp ------------------SSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCC
T ss_pred ------------------cCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccc
Confidence 0012356789999999844444443 3 58999999999997776632 245
Q ss_pred eEEEEEecCCCCE-EEEEE---CCCeEEEEeCCCceEEEEecC------------------------------CCCEEEE
Q 002086 597 VTCIQFNPMDDDY-FISGS---LDAKVRIWSISDRLVVDWTDL------------------------------HEMVTAA 642 (969)
Q Consensus 597 V~sv~fsp~~~~~-L~sgs---~Dg~I~IWDl~~~~~~~~~~~------------------------------~~~V~sv 642 (969)
+..+++++ ++.. +++-. .++.|.+||+.+++....... ...+..|
T Consensus 122 ~~~v~vd~-~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gi 200 (343)
T 2qe8_A 122 VNDLAVDL-IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGI 200 (343)
T ss_dssp CCEEEEET-TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEE
T ss_pred cceEEEec-CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceeccccee
Confidence 78999997 4444 45544 578999999988776654422 0236889
Q ss_pred EEccCCCEEEEEeCCC-cEEEEEcC---CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC-C
Q 002086 643 CYTPDGQNALIGSHKG-SCRLYSIE---DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG-L 717 (969)
Q Consensus 643 ~fspdg~~Lasgs~dg-~I~IwDl~---~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~-~ 717 (969)
+|+|+|+.|+++...+ .+..++.. .+..... .+.......++......+++++++ .++++...++.|.+||. .
T Consensus 201 a~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~ 278 (343)
T 2qe8_A 201 VLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA-ELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSAD 278 (343)
T ss_dssp EECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH-HHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTT
T ss_pred EeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh-hhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCC
Confidence 9999999888887666 44444432 1110000 000000001223356678999987 78888888899999997 3
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
.....+..........+++|.++|.++++.+..+.+.+|.
T Consensus 279 G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 279 RAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp TEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 3222222222345678999999999888887665554444
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-09 Score=127.02 Aligned_cols=241 Identities=12% Similarity=0.133 Sum_probs=153.0
Q ss_pred ccccCEEEEEEeCCCCEEEE-----EeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 449 AHEGSIWTIKFSLDARFLAS-----AGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaT-----gs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+|...|..++|||||++||- |+.+.+|+|||+.+++.+...
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~---------------------------------- 171 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP---------------------------------- 171 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE----------------------------------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc----------------------------------
Confidence 46678999999999998883 333468999999988765410
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCC-------------cEEEEECCCCcE--E
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDK-------------TVRLWDMETKSC--L 588 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~Dg-------------tV~IWDl~t~~~--i 588 (969)
+.+. ....++|+.++.|+.++.+. .|++|++.++.. .
T Consensus 172 --------------------------~~~~--k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~ 223 (693)
T 3iuj_A 172 --------------------------LKDV--KFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR 223 (693)
T ss_dssp --------------------------EEEE--ESCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCE
T ss_pred --------------------------cCCc--eeccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccce
Confidence 0000 01234566445666666653 499999988653 3
Q ss_pred EEe---e-cCCCeEEEEEecCCCCEEEEEEC----CCeEEEEeCCCc--eEEEEecCCCCEEEEEEccCCCEEEEEeC--
Q 002086 589 KLF---A-HNDYVTCIQFNPMDDDYFISGSL----DAKVRIWSISDR--LVVDWTDLHEMVTAACYTPDGQNALIGSH-- 656 (969)
Q Consensus 589 ~~~---~-h~~~V~sv~fsp~~~~~L~sgs~----Dg~I~IWDl~~~--~~~~~~~~~~~V~sv~fspdg~~Lasgs~-- 656 (969)
.++ . |...+..+.|+| ++.+|+.... ...|+++|+.++ ....+..+....... ++++|..|+..+.
T Consensus 224 ~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~ 301 (693)
T 3iuj_A 224 LVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRD 301 (693)
T ss_dssp EEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTT
T ss_pred EEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCC
Confidence 333 2 345678999999 8887755432 258999999776 556666665555554 6677776665543
Q ss_pred --CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC--cEEEEeCCcceEEEEeecCCCCe
Q 002086 657 --KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS--RIRILDGLDIVHKFRGFRNTSSQ 732 (969)
Q Consensus 657 --dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg--~I~IwD~~~~~~~~~~~~~~~~V 732 (969)
.+.|.++|+.++.......+ ..+...+. .|++++..++++...++ .|++|+................+
T Consensus 302 ~~~~~l~~~d~~~~~~~~~~~l------~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~ 373 (693)
T 3iuj_A 302 APNRRLVTVDAANPGPAHWRDL------IPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSV 373 (693)
T ss_dssp CTTCEEEEEETTSCCGGGCEEE------ECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEE
T ss_pred CCCCEEEEEeCCCCCccccEEE------ecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceE
Confidence 35799999987653111111 22333343 78888744444445555 68889865433222223344567
Q ss_pred EEEEEeCCCCEEEEEeCC----CcEEEEEcCCC
Q 002086 733 ISAAFNADGKYIISASED----SQVYVWKREEH 761 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~D----g~I~IWdl~t~ 761 (969)
..+.+++++..|+....+ +.|+.||+.++
T Consensus 374 ~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 374 SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 777888888776655544 78999999874
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.2e-09 Score=127.85 Aligned_cols=194 Identities=11% Similarity=0.061 Sum_probs=133.3
Q ss_pred cCCCCEEEEEecC-CcEEE-----EEeCCCcEEEEECCCCcEEEEeecCCCe--EEEEEecCCCCEEEEEECCCe-----
Q 002086 552 GHLDDVLDLSWSR-SHLLL-----SSSMDKTVRLWDMETKSCLKLFAHNDYV--TCIQFNPMDDDYFISGSLDAK----- 618 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~-----Sgs~DgtV~IWDl~t~~~i~~~~h~~~V--~sv~fsp~~~~~L~sgs~Dg~----- 618 (969)
+|...+..++|+| +++|+ .|+.+.+|++||+.+++.+. ..+...+ ..++|+| ++..|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEec-CCCEEEEEEecCCCCCcc
Confidence 4666788999999 77777 34445789999999998651 1122222 6889999 9999999988776
Q ss_pred --------EEEEeCCCce---EEEEe--cCCCCEEEEEEccCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeeeccc
Q 002086 619 --------VRIWSISDRL---VVDWT--DLHEMVTAACYTPDGQNALIGSHKG----SCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 619 --------I~IWDl~~~~---~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg----~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
|++|++.++. .+... .+...+..+.|+|+|++|+.++.++ .|++|+..++.....
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l-------- 267 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLL-------- 267 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEE--------
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEe--------
Confidence 9999998765 22222 2335788999999999998877665 677776655443221
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEe---CCCcEEEEeCCcce----EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTS---ADSRIRILDGLDIV----HKFRGFRNTSSQISAAFNADGKYIISASEDSQVY 754 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs---~Dg~I~IwD~~~~~----~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~ 754 (969)
..+...+....+ +++. +++.+. .++.|++||..... ..+..+.....+..++|+ ++.++++...|+..+
T Consensus 268 -~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 268 -VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp -EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred -ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 123334555556 6664 555444 35789999975432 333333324457788888 778889999999988
Q ss_pred EEEcC
Q 002086 755 VWKRE 759 (969)
Q Consensus 755 IWdl~ 759 (969)
||.++
T Consensus 344 l~~~~ 348 (695)
T 2bkl_A 344 VRVAT 348 (695)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-08 Score=107.33 Aligned_cols=194 Identities=8% Similarity=0.024 Sum_probs=136.9
Q ss_pred CEEEEEecC-CcEEE-EEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 556 DVLDLSWSR-SHLLL-SSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~-Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
...++++.+ +.+++ +...++.|.+||..+....... .+...+.+|++.+ ++.++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678899988 56555 4477899999998765543222 3445788999998 777666655 88999999987765444
Q ss_pred ec-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcE
Q 002086 633 TD-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRI 711 (969)
Q Consensus 633 ~~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I 711 (969)
.. ....+..++++++|+++++...++.|.+|+..+...... .......+.++++++++ .++++...++.|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i 173 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--------PFTGLNDPDGVAVDNSG-NVYVTDTDNNRV 173 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--------CCCSCCSCCCEEECTTC-CEEEEEGGGTEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--------ccccCCCceeEEEeCCC-CEEEEECCCCEE
Confidence 32 225789999999999777777788999997655432211 01223467889999988 566666678899
Q ss_pred EEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 712 RILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 712 ~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
++||................+..++++++|.++++...++.|.+|+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 9999765443332223335678999999998888877789999999865
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-08 Score=115.62 Aligned_cols=268 Identities=11% Similarity=0.028 Sum_probs=174.6
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEe----------CCCcEEEEecccceEEEeecCCccCcccccccCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG----------EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs----------~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~ 504 (969)
+.|+.+++.+.++..-..+ .++++|||++|+.+. .++.|.++|..+++.+..+......
T Consensus 103 VID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~--------- 171 (426)
T 3c75_H 103 VIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP--------- 171 (426)
T ss_dssp EEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC---------
T ss_pred EEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc---------
Confidence 4577888888888866666 899999999877765 4679999999998887643210000
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC--CCcEEEEE
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM--DKTVRLWD 581 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~--DgtV~IWD 581 (969)
.+ ........+.|+| +++|+++.. ++.|.+.|
T Consensus 172 --------------------------------------------r~-~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID 206 (426)
T 3c75_H 172 --------------------------------------------RF-LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVD 206 (426)
T ss_dssp --------------------------------------------CC-CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEE
T ss_pred --------------------------------------------cc-ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEE
Confidence 00 0001123467888 778888764 68999999
Q ss_pred CCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe----cC-CCC-EEEEEEccCCCEEEEEe
Q 002086 582 METKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT----DL-HEM-VTAACYTPDGQNALIGS 655 (969)
Q Consensus 582 l~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~----~~-~~~-V~sv~fspdg~~Lasgs 655 (969)
+.+++.+..+.-.+. ....|.....+++.+.||++.+.++.++++.... .. ..+ ...+.|.+++..++...
T Consensus 207 ~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s 283 (426)
T 3c75_H 207 LEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT 283 (426)
T ss_dssp TTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB
T ss_pred CCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe
Confidence 999999888754332 3344423467788888999999998666655321 11 111 12357899999888888
Q ss_pred CCCcEEEEEcCCCceeeeeeeeeccc----ccCCCCCeEEEEEcCCCCceEEEEe---------CCCcEEEEeCCcceEE
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTK----KKSSTRKITGFQFSPSNPSEVLVTS---------ADSRIRILDGLDIVHK 722 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~----~~~h~~~It~l~fspd~~~~l~sgs---------~Dg~I~IwD~~~~~~~ 722 (969)
..+.+.+.|+..........+.+... ..........++++|++...+++.. ..+.|.++|..+....
T Consensus 284 ~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv 363 (426)
T 3c75_H 284 YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI 363 (426)
T ss_dssp TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE
Confidence 88999999997665432222111100 0001112223689998854444433 1357999997654333
Q ss_pred EEeecCCCCeEEEEEeCCCC-EEEEEe-CCCcEEEEEcCCCC
Q 002086 723 FRGFRNTSSQISAAFNADGK-YIISAS-EDSQVYVWKREEHR 762 (969)
Q Consensus 723 ~~~~~~~~~V~sl~fspdg~-~LaSgs-~Dg~I~IWdl~t~~ 762 (969)
-.... ......+.|+|||+ +|++.. .++.|.++|+.+.+
T Consensus 364 ~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 364 NKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 22211 12366899999999 888888 59999999999843
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.94 E-value=4.3e-07 Score=99.03 Aligned_cols=198 Identities=13% Similarity=0.126 Sum_probs=135.3
Q ss_pred ccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce
Q 002086 551 IGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL 628 (969)
Q Consensus 551 ~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~ 628 (969)
..+..-..+..|++ +.++++...++.|..||..+++. ..+.....+.++++++ +++++++ . ++.|.+||..+++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCc
Confidence 33444566888988 45666777789999999998876 4556678899999999 8885554 4 5689999999887
Q ss_pred EEEEecC-----CCCEEEEEEccCCCEEEEEeCC---------CcEEEEEcCC-CceeeeeeeeecccccCCCCCeEEEE
Q 002086 629 VVDWTDL-----HEMVTAACYTPDGQNALIGSHK---------GSCRLYSIED-SKLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 629 ~~~~~~~-----~~~V~sv~fspdg~~Lasgs~d---------g~I~IwDl~~-~~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
...+... ...+..++++|+|+++++.... ....||.+.. ++.... .........++
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~---------~~~~~~pngi~ 155 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY---------FDQVDISNGLD 155 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE---------EEEESBEEEEE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE---------eeccccccceE
Confidence 6554432 2347899999999976654322 2344555443 222111 11223467899
Q ss_pred EcCCCCceEEEEeCCCcEEEEeCC--cce----EEEEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 694 FSPSNPSEVLVTSADSRIRILDGL--DIV----HKFRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg~I~IwD~~--~~~----~~~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|+|++..++++.+.++.|.+|+.. ... ..+... ........++++++|.+.++....+.|.+||.+++
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 999985556666778999999852 211 112211 22345678999999998888888889999999873
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-07 Score=101.32 Aligned_cols=200 Identities=7% Similarity=0.094 Sum_probs=135.9
Q ss_pred eccCCCCEEEEEecC-CcEEEE-------EeCCCcEEEEECCCCcEEEEee-----cCCCeEEEEEecCCCCEEEEEECC
Q 002086 550 FIGHLDDVLDLSWSR-SHLLLS-------SSMDKTVRLWDMETKSCLKLFA-----HNDYVTCIQFNPMDDDYFISGSLD 616 (969)
Q Consensus 550 l~gH~~~I~~l~fs~-~~~L~S-------gs~DgtV~IWDl~t~~~i~~~~-----h~~~V~sv~fsp~~~~~L~sgs~D 616 (969)
+........+++|.+ +.++++ +..++.|.+||..+++...... +...+.++++++ ++..|+.+...
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~~ 91 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMR 91 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETT
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEECC
Confidence 344455678999998 566666 5778999999998888765433 557799999998 62344444445
Q ss_pred CeEEEEeCCCceEEEE-ecC-----CCCEEEEEEccCCCEEEEEeCC---------------CcEEEEEcCCCceeeeee
Q 002086 617 AKVRIWSISDRLVVDW-TDL-----HEMVTAACYTPDGQNALIGSHK---------------GSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~-~~~-----~~~V~sv~fspdg~~Lasgs~d---------------g~I~IwDl~~~~~~~~~~ 675 (969)
+.|.+||.. ++...+ ... ...+..++++++|+++++...+ +.|..|+.. ++.....
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~- 168 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD- 168 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-
Confidence 579999998 776554 321 1347899999999887776655 567777765 4432211
Q ss_pred eeecccccCCCCCeEEEEEc----CCCCceEEEEeCCCcEEEEeCC-cce----EEEEeec-CC-CCeEEEEEeCCCCEE
Q 002086 676 VDFQTKKKSSTRKITGFQFS----PSNPSEVLVTSADSRIRILDGL-DIV----HKFRGFR-NT-SSQISAAFNADGKYI 744 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fs----pd~~~~l~sgs~Dg~I~IwD~~-~~~----~~~~~~~-~~-~~V~sl~fspdg~~L 744 (969)
.+......++|+ |++..++++...++.|++||.. ... ..+.... +. .....++++++|.++
T Consensus 169 --------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 169 --------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp --------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred --------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence 112346788999 9873344445678899999854 211 1122111 11 457789999999999
Q ss_pred EEEeCCCcEEEEEcCCC
Q 002086 745 ISASEDSQVYVWKREEH 761 (969)
Q Consensus 745 aSgs~Dg~I~IWdl~t~ 761 (969)
++...++.|.+||..++
T Consensus 241 v~~~~~~~i~~~d~~~g 257 (314)
T 1pjx_A 241 VANWGSSHIEVFGPDGG 257 (314)
T ss_dssp EEEETTTEEEEECTTCB
T ss_pred EEEcCCCEEEEEcCCCC
Confidence 98888999999998753
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.93 E-value=6.6e-08 Score=109.71 Aligned_cols=133 Identities=9% Similarity=0.012 Sum_probs=106.3
Q ss_pred ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
.+.+ |+.|+| |+++|+++ .++.|++||+.+.....
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~----------------------------------------- 120 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFR----------------------------------------- 120 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEE-----------------------------------------
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccC-----------------------------------------
Confidence 4667 999999 99999999 88999999987533111
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDD 608 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~ 608 (969)
....|...|.++.+.+.+ +++++.||.|.+||+.++.... +...|+|++|+| ++
T Consensus 121 --------------------~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG- 174 (388)
T 1xip_A 121 --------------------TVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ- 174 (388)
T ss_dssp --------------------EEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE-
T ss_pred --------------------ccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc-
Confidence 223455667777777643 8889999999999999888754 456899999999 66
Q ss_pred EEEEEECCCeEEEEeCCCceE--EEEe----------cCCCCEEEEEEccCCCEEEE
Q 002086 609 YFISGSLDAKVRIWSISDRLV--VDWT----------DLHEMVTAACYTPDGQNALI 653 (969)
Q Consensus 609 ~L~sgs~Dg~I~IWDl~~~~~--~~~~----------~~~~~V~sv~fspdg~~Las 653 (969)
++.|..||+|++|+...+.+ ...+ .+...|.+|+|.+++.++++
T Consensus 175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp -EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred -eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 78899999999999988875 3333 25678999999999988886
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.92 E-value=8.8e-07 Score=100.37 Aligned_cols=239 Identities=8% Similarity=-0.037 Sum_probs=148.5
Q ss_pred EEEecC-CcEEEEEe----------CCCcEEEEECCCCcEEEEeecC--------CCeEEEEEecCCCCEEEEEEC--CC
Q 002086 559 DLSWSR-SHLLLSSS----------MDKTVRLWDMETKSCLKLFAHN--------DYVTCIQFNPMDDDYFISGSL--DA 617 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs----------~DgtV~IWDl~t~~~i~~~~h~--------~~V~sv~fsp~~~~~L~sgs~--Dg 617 (969)
.+.++| +++|+.+. .++.|.+||..+.+.+..+.-. .....++|+| ++++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 688998 67777765 3678999999998888766322 3456899999 9999998874 57
Q ss_pred eEEEEeCCCceEEEE-ecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC-eEEEEE
Q 002086 618 KVRIWSISDRLVVDW-TDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK-ITGFQF 694 (969)
Q Consensus 618 ~I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~-It~l~f 694 (969)
.|.++| .+++++.. ...... +.+.|++ ..+++.+.||.+.++|. +++........ ... ....+ .....+
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~--~~~-~~~~p~~~~~~~ 220 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG--AML-TAAQNLLTQPAQ 220 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc--ccc-cCCcceeeccee
Confidence 899999 99988776 655443 4455655 45567778999999999 77654221100 000 11112 223456
Q ss_pred cCCCCceEEEEeCCCcEEEEeCCcce----EEEEeec--------CCCCeEEEEEeCCCCEEEEEeC----------CCc
Q 002086 695 SPSNPSEVLVTSADSRIRILDGLDIV----HKFRGFR--------NTSSQISAAFNADGKYIISASE----------DSQ 752 (969)
Q Consensus 695 spd~~~~l~sgs~Dg~I~IwD~~~~~----~~~~~~~--------~~~~V~sl~fspdg~~LaSgs~----------Dg~ 752 (969)
.+++..++++ +..+.+.+.|..... ..+.... .......+.++||++.|+.+.. .+.
T Consensus 221 ~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 221 ANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred EecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 6666444444 467899999964321 1111100 1122334778998888777653 346
Q ss_pred EEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCC-Cccc
Q 002086 753 VYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKE-GSPA 831 (969)
Q Consensus 753 I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~-~i~~ 831 (969)
|.++|+.+.+.+ .... .+..+....++|++. .++.
T Consensus 300 V~VID~~t~~vv------~~i~--------------------------------------~g~~p~~i~~s~Dg~~~l~v 335 (373)
T 2mad_H 300 VTSVTGLVGQTS------SQIS--------------------------------------LGHDVDAISVAQDGGPDLYA 335 (373)
T ss_pred EEEEECCCCEEE------EEEE--------------------------------------CCCCcCeEEECCCCCeEEEE
Confidence 888888773211 1110 011233445677877 5555
Q ss_pred cC-CCCccccCCCCCCccccC
Q 002086 832 GH-SRRLLPPLPKKTNKVERV 851 (969)
Q Consensus 832 ~~-~~~~L~~~~~~s~~~~~~ 851 (969)
.. .+..+..+...+.+..++
T Consensus 336 ~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 336 LSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EcCCCCeEEEEECCCCCEEee
Confidence 55 467788888777766655
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-07 Score=115.89 Aligned_cols=192 Identities=13% Similarity=0.088 Sum_probs=126.6
Q ss_pred CCCCEEEEEecC-CcEEEEEeCC-----CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCe--------
Q 002086 553 HLDDVLDLSWSR-SHLLLSSSMD-----KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAK-------- 618 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sgs~D-----gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~-------- 618 (969)
|...+..+.|+| +++|+.++.+ .+|++||+.+++.+....+...+..++|+| + +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence 444678899999 7788776644 469999999999876533333346789999 7 88888776654
Q ss_pred ------EEEEeCCCce---EEEEecC--CCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCCC--c-eeeeeeeeec
Q 002086 619 ------VRIWSISDRL---VVDWTDL--HEMVTAACYTPDGQNALIGSHKG-----SCRLYSIEDS--K-LHQLNQVDFQ 679 (969)
Q Consensus 619 ------I~IWDl~~~~---~~~~~~~--~~~V~sv~fspdg~~Lasgs~dg-----~I~IwDl~~~--~-~~~~~~~~~~ 679 (969)
|++|++.++. .+..... ...+..+.|+|||++|+..+.++ .|++||+.++ + ....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l------ 312 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL------ 312 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE------
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe------
Confidence 8999997764 2222222 23588999999999998877544 8999999876 3 2111
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeC----CCcEEEEeCCcc---eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSA----DSRIRILDGLDI---VHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~----Dg~I~IwD~~~~---~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
..+...+.... +|++ ..|+..+. ++.|++||.... ...+. ..+...+..++|+ ++.++++...|+.
T Consensus 313 ---~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 313 ---IPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp ---ECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred ---cCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 12223334443 4777 45555544 345999997652 12222 2233345677787 6678888899998
Q ss_pred EEEEEcC
Q 002086 753 VYVWKRE 759 (969)
Q Consensus 753 I~IWdl~ 759 (969)
.+||.++
T Consensus 386 ~~l~~~~ 392 (741)
T 1yr2_A 386 SQVLAFD 392 (741)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8777664
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-08 Score=113.31 Aligned_cols=260 Identities=10% Similarity=-0.070 Sum_probs=159.7
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEe----------CCCcEEEEecccceEEEeecCCccCcccccccCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG----------EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs----------~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~ 504 (969)
+.|..+++.+.++..-..+ .+.|+|||++|+.+. .+++|.+||+.+++.+..+......-
T Consensus 50 vID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-------- 119 (368)
T 1mda_H 50 VSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-------- 119 (368)
T ss_dssp EEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--------
T ss_pred EEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--------
Confidence 5688888899998876677 899999999888876 37899999999998887543110000
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC--CCcEEE--
Q 002086 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM--DKTVRL-- 579 (969)
Q Consensus 505 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~--DgtV~I-- 579 (969)
...+ .....+.++| +++|+++.. +..|.+
T Consensus 120 --------------------------------------------~~~g--~~P~~ia~SpDGk~lyVan~~~~~~v~V~~ 153 (368)
T 1mda_H 120 --------------------------------------------FSVG--PRVHIIGNCASSACLLFFLFGSSAAAGLSV 153 (368)
T ss_dssp --------------------------------------------CCBS--CCTTSEEECTTSSCEEEEECSSSCEEEEEE
T ss_pred --------------------------------------------cccC--CCcceEEEcCCCCEEEEEccCCCCeEEEEE
Confidence 0000 1123578898 777887764 467888
Q ss_pred EECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC-----ceEEEE----ec-CCCCEEEEEEccCCC
Q 002086 580 WDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD-----RLVVDW----TD-LHEMVTAACYTPDGQ 649 (969)
Q Consensus 580 WDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~-----~~~~~~----~~-~~~~V~sv~fspdg~ 649 (969)
+|+.+ +..+.-.+. +.+.|.....+++.+.||.+.+.|+.+ +++... .. ...+. . .+++.
T Consensus 154 iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~ 223 (368)
T 1mda_H 154 PGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPG 223 (368)
T ss_dssp TTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTT
T ss_pred Echhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCC
Confidence 99987 444432221 223342345677778899999999987 443311 11 12233 3 66667
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeeeccc----ccCCCCCeEEEEEcCCCCceEEEEe---C-----CCcEEEEeCC
Q 002086 650 NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK----KKSSTRKITGFQFSPSNPSEVLVTS---A-----DSRIRILDGL 717 (969)
Q Consensus 650 ~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~----~~~h~~~It~l~fspd~~~~l~sgs---~-----Dg~I~IwD~~ 717 (969)
.++..+. +.+.+.|+..........+.+... ..........++|+|++...+++.. . ++.+.++|..
T Consensus 224 ~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~ 302 (368)
T 1mda_H 224 MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302 (368)
T ss_dssp EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECC
Confidence 7666666 999999997643222111111100 0001111122679999854444433 2 2456699976
Q ss_pred cceEEEEeecCCCCeEEEEEeCCCC-EEEEEe-CCCcEEEEEcCCCC
Q 002086 718 DIVHKFRGFRNTSSQISAAFNADGK-YIISAS-EDSQVYVWKREEHR 762 (969)
Q Consensus 718 ~~~~~~~~~~~~~~V~sl~fspdg~-~LaSgs-~Dg~I~IWdl~t~~ 762 (969)
+......... ......+.|+|||+ ++++.. .++.|.++|+.+.+
T Consensus 303 t~~vv~~i~v-g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 303 VGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCeEEEEEEC-CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 5443222211 12467899999997 566666 59999999999843
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-07 Score=105.54 Aligned_cols=200 Identities=9% Similarity=0.044 Sum_probs=142.0
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC--eEEEEeCCCceEEE
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA--KVRIWSISDRLVVD 631 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg--~I~IWDl~~~~~~~ 631 (969)
.....|+|++ +.++++...++.|++||..++............. ++|++ +++.|+++..++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4578899998 5666666677999999999888777665444444 99999 888888888766 79999987654432
Q ss_pred Ee----c-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCC--eEEEEEcCCCCceEEE
Q 002086 632 WT----D-LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRK--ITGFQFSPSNPSEVLV 704 (969)
Q Consensus 632 ~~----~-~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~--It~l~fspd~~~~l~s 704 (969)
.. . ....+.+++++|++..|+++..++.|+.||..++.......... ...... ...++|+|++..++++
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~----~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLEL----SGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCC----CSCCCCSSCCEEEEETTTTEEEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccc----cCCCCCCccccEEEeCCCCEEEEE
Confidence 22 2 34567889999965566667778899999998776432211100 111111 2399999976567777
Q ss_pred EeCCCcEEEEeCCcceEEEEeec-------------CCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 705 TSADSRIRILDGLDIVHKFRGFR-------------NTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~~~~~~~~~-------------~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
-..++.|+.|+.......+.+.. .......++|+++|.++++-. .++.|+.|++.+
T Consensus 285 d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 285 DQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp ETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred eCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 77889999999665444443332 023467899999999888877 889999999765
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.79 E-value=5.2e-07 Score=102.05 Aligned_cols=233 Identities=11% Similarity=0.055 Sum_probs=152.1
Q ss_pred EEeCCCCEEEEEeC-----CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 458 KFSLDARFLASAGE-----DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 458 ~fSpDg~~LaTgs~-----DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
...|+++.++.... ++.|.+.|..+++.+..+.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~------------------------------------------ 76 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID------------------------------------------ 76 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE------------------------------------------
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE------------------------------------------
Confidence 34688887777765 6899999999988876432
Q ss_pred ccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe----------CCCcEEEEECCCCcEEEEeec--------
Q 002086 533 VHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS----------MDKTVRLWDMETKSCLKLFAH-------- 593 (969)
Q Consensus 533 ~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs----------~DgtV~IWDl~t~~~i~~~~h-------- 593 (969)
.-..+ . +.++| +++|+++. .++.|.+||..+++.+..+.-
T Consensus 77 -------------------vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~ 135 (386)
T 3sjl_D 77 -------------------GGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 135 (386)
T ss_dssp -------------------ECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred -------------------CCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence 11223 3 88998 66666654 467899999999999887732
Q ss_pred CCCeEEEEEecCCCCEEEEEEC--CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-Cce
Q 002086 594 NDYVTCIQFNPMDDDYFISGSL--DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED-SKL 670 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~--Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~-~~~ 670 (969)
......++|+| ++++++++.. ++.|.++|+.+++++........ ...+....+.+++.+.||.+.+.++.. ++.
T Consensus 136 g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 136 GTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp SCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred CCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 22567899999 9998888864 68999999999998877765442 223333456777888899999999976 554
Q ss_pred eeeeeeeecccccCCCCCeE-EEEEc-CCCCceEEEEeCCCcEEEEeCCcce----EEEEeec--------CCCCeEEEE
Q 002086 671 HQLNQVDFQTKKKSSTRKIT-GFQFS-PSNPSEVLVTSADSRIRILDGLDIV----HKFRGFR--------NTSSQISAA 736 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It-~l~fs-pd~~~~l~sgs~Dg~I~IwD~~~~~----~~~~~~~--------~~~~V~sl~ 736 (969)
..... ........++. ...|. +++ .++..+.++.|++.|..... ..+..+. .......++
T Consensus 213 ~~~~~----~~~~~~~~~~~~~~~~~~~dG--~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a 286 (386)
T 3sjl_D 213 EITHT----EVFHPEDEFLINHPAYSQKAG--RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 286 (386)
T ss_dssp EEEEC----CCCSCTTSCBCSCCEEETTTT--EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred EEeec----ceeccccccccccceeEcCCC--cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence 22110 00011112222 23554 555 34446668999999975322 1121000 011223467
Q ss_pred EeCCCCEEEEEeC----------CCcEEEEEcCCCC
Q 002086 737 FNADGKYIISASE----------DSQVYVWKREEHR 762 (969)
Q Consensus 737 fspdg~~LaSgs~----------Dg~I~IWdl~t~~ 762 (969)
++++++.|+.... .+.|.+.|+.+.+
T Consensus 287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 7999988887643 2468899998843
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=4.2e-06 Score=92.55 Aligned_cols=190 Identities=11% Similarity=0.040 Sum_probs=129.6
Q ss_pred CCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 555 DDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 555 ~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
.-..+..|++ +.++++...++.|..||..+++.. .+.....+.+++|.+ ++.++++. .+ .|.+||..++++..+
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 3456788998 456667777899999999987654 345567899999999 77766654 44 499999988876554
Q ss_pred ecC-----CCCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 633 TDL-----HEMVTAACYTPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 633 ~~~-----~~~V~sv~fspdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
... ...+..++++|+|+++++... .+.|..++ +++..... ........++|+|++..+
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~---------~~~~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF---------ADISIPNSICFSPDGTTG 193 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE---------EEESSEEEEEECTTSCEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee---------CCCcccCCeEEcCCCCEE
Confidence 432 135889999999997665442 24555565 44432211 112346789999998445
Q ss_pred EEEEeCCCcEEEEeCC--cc-e----EEEEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 702 VLVTSADSRIRILDGL--DI-V----HKFRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~--~~-~----~~~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
+++.+.++.|.+|+.. .. . ..+... ........++++++|.+.++...++.|.+|+..
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 5555667899999964 22 1 222222 123456789999999988887777899999873
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-06 Score=96.79 Aligned_cols=190 Identities=13% Similarity=0.125 Sum_probs=127.7
Q ss_pred EEEEecCCcEEEEEeCC------CcEEEEECCCCcEEEEeecC----CCeEEEEEecCCCCEEEEEE-------------
Q 002086 558 LDLSWSRSHLLLSSSMD------KTVRLWDMETKSCLKLFAHN----DYVTCIQFNPMDDDYFISGS------------- 614 (969)
Q Consensus 558 ~~l~fs~~~~L~Sgs~D------gtV~IWDl~t~~~i~~~~h~----~~V~sv~fsp~~~~~L~sgs------------- 614 (969)
..+...|+.+++++..+ +.|.+.|..+.+.+..+... ..-+.+-|+| +++.+++..
T Consensus 141 h~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 141 HTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred cceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence 45566674466666555 78999999999999988422 2344678899 888888874
Q ss_pred ------CCCeEEEEeCCCceEEEEecCC---CCEEEEEE--ccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeee
Q 002086 615 ------LDAKVRIWSISDRLVVDWTDLH---EMVTAACY--TPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 615 ------~Dg~I~IWDl~~~~~~~~~~~~---~~V~sv~f--spdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~ 677 (969)
.+.+|.+||+.+++++..+... .....+.| +|+++++.+++. +++|.+|....+.......+.
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence 3689999999998877766654 34556666 999999888774 668888777665543333322
Q ss_pred ecccc-cC-----------CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEEEEeecC--------------
Q 002086 678 FQTKK-KS-----------STRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---IVHKFRGFRN-------------- 728 (969)
Q Consensus 678 ~~~~~-~~-----------h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~~~~~~~-------------- 728 (969)
+.... .. .......|.+++++..++++.-..+.|.+||+.. ....-.....
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~ 379 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKL 379 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCC
T ss_pred CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccC
Confidence 21110 00 0245788999999955555555678999999642 1211111111
Q ss_pred CCCeEEEEEeCCCCEEEEEe
Q 002086 729 TSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 729 ~~~V~sl~fspdg~~LaSgs 748 (969)
...-..+.++|||++|+++.
T Consensus 380 ~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 380 TGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEcCCCCEEEEEc
Confidence 01246789999999999998
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5e-06 Score=89.24 Aligned_cols=213 Identities=10% Similarity=0.034 Sum_probs=145.2
Q ss_pred cceeeeEecccccC--EEEEEEeCCCCEEEEEeC--CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCC
Q 002086 440 ALHLCQEIQAHEGS--IWTIKFSLDARFLASAGE--DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSP 515 (969)
Q Consensus 440 ~~~l~~~L~gH~~~--I~~l~fSpDg~~LaTgs~--DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~ 515 (969)
+.+.++++. |... ...|.|++|+.++++.+. ++.|++.|+.+++.+......
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~----------------------- 63 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD----------------------- 63 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-----------------------
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-----------------------
Confidence 345666664 5543 689999999876666654 689999999999987743210
Q ss_pred CCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecC-
Q 002086 516 NPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHN- 594 (969)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~- 594 (969)
. ......+++..+...++.-.++.|.++|..+.+.+..+...
T Consensus 64 ------------------------------------~-~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~ 106 (266)
T 2iwa_A 64 ------------------------------------D-SYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQM 106 (266)
T ss_dssp ------------------------------------T-TCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCS
T ss_pred ------------------------------------C-CcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCC
Confidence 0 00112355554455556667899999999999999988544
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~ 668 (969)
..-.. +.+ ++..++++..++.|.++|..+.++....... ..++.+.|. +|..++....++.|.+.|..++
T Consensus 107 ~~g~g--lt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg 182 (266)
T 2iwa_A 107 KDGWG--LAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG 182 (266)
T ss_dssp SSCCE--EEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC
T ss_pred CCeEE--EEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCC
Confidence 33333 445 5666666667899999999998766544422 236788888 6755555556889999999999
Q ss_pred ceeeeeeeeec-----ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 669 KLHQLNQVDFQ-----TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 669 ~~~~~~~~~~~-----~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
+......+.-. ...........+|+|+|++..+++++.....|+..++.
T Consensus 183 ~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 183 TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 88665543210 01112234678999999987778888888888888743
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.8e-06 Score=100.68 Aligned_cols=189 Identities=12% Similarity=0.112 Sum_probs=123.1
Q ss_pred CCCcEEEEECCCCcEEEEeecC--------------------------------CCeEEEEEecCCCCEEEEEECCCe--
Q 002086 573 MDKTVRLWDMETKSCLKLFAHN--------------------------------DYVTCIQFNPMDDDYFISGSLDAK-- 618 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~--------------------------------~~V~sv~fsp~~~~~L~sgs~Dg~-- 618 (969)
.++.|+.||..+|+.+-.+... .....++++| +..+++.+..++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w 259 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLW 259 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCcc
Confidence 3789999999999988766311 0112578888 7788888887764
Q ss_pred -----------------EEEEeCCCceEEEEecC--C--------CCEEEEEEccCCC---EEEEEeCCCcEEEEEcCCC
Q 002086 619 -----------------VRIWSISDRLVVDWTDL--H--------EMVTAACYTPDGQ---NALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 619 -----------------I~IWDl~~~~~~~~~~~--~--------~~V~sv~fspdg~---~Lasgs~dg~I~IwDl~~~ 668 (969)
|..||..+++.+-.+.. . ..+....+..+|+ .++.++.+|.++++|..++
T Consensus 260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG 339 (689)
T 1yiq_A 260 DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG 339 (689)
T ss_dssp CHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred ccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence 99999999987754332 1 1222233334665 7888999999999999999
Q ss_pred ceeeeeeeeec---cc-----------------ccCCC-----------CCeEEEEEcCCCCceEEEEeC----------
Q 002086 669 KLHQLNQVDFQ---TK-----------------KKSST-----------RKITGFQFSPSNPSEVLVTSA---------- 707 (969)
Q Consensus 669 ~~~~~~~~~~~---~~-----------------~~~h~-----------~~It~l~fspd~~~~l~sgs~---------- 707 (969)
+++....+... .. ..... ..-..++|+|+. .++++...
T Consensus 340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~ 418 (689)
T 1yiq_A 340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHIP 418 (689)
T ss_dssp CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT-TEEEEEEEECCEEEECCS
T ss_pred CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC-CEEEEeccccceeeeecc
Confidence 88633221100 00 00000 011236788876 45555421
Q ss_pred -----------------------------------CCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 708 -----------------------------------DSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 708 -----------------------------------Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
++.|+.||..+.........+ .......+...+.+|+.|+.||.
T Consensus 419 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~ 497 (689)
T 1yiq_A 419 EAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGR 497 (689)
T ss_dssp SCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSE
T ss_pred ccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCc
Confidence 377999998776655554332 22333456677889999999999
Q ss_pred EEEEEcCCCCcc
Q 002086 753 VYVWKREEHRNA 764 (969)
Q Consensus 753 I~IWdl~t~~~~ 764 (969)
|+.||.++++.+
T Consensus 498 l~a~D~~tG~~l 509 (689)
T 1yiq_A 498 VIAYAADTGEKL 509 (689)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCccc
Confidence 999999995443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.8e-06 Score=91.72 Aligned_cols=198 Identities=13% Similarity=0.113 Sum_probs=131.4
Q ss_pred ceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 546 PFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.+..+..+........|++ ++ +++++..++.|..|+. +++......+...+..+++++ +++++++...++.|.+|+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEEC
Confidence 4445666667788999998 55 6777778899999998 455443345667899999999 888666655668899999
Q ss_pred CCCceEEEEecC-----CCCEEEEEEccCCCEEEE----EeC-------------CCcEEEEEcCCCceeeeeeeeeccc
Q 002086 624 ISDRLVVDWTDL-----HEMVTAACYTPDGQNALI----GSH-------------KGSCRLYSIEDSKLHQLNQVDFQTK 681 (969)
Q Consensus 624 l~~~~~~~~~~~-----~~~V~sv~fspdg~~Las----gs~-------------dg~I~IwDl~~~~~~~~~~~~~~~~ 681 (969)
.. +....+... ...+..+++.++|.++++ |.. .+.|+.||..+++.....
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------- 185 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------- 185 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-------
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-------
Confidence 86 554433221 134678999999998876 332 256777777666543321
Q ss_pred ccCCCCCeEEEEEcCCCCceEEEEeCC------CcEEEEeCCcce-EEEEee--cCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 682 KKSSTRKITGFQFSPSNPSEVLVTSAD------SRIRILDGLDIV-HKFRGF--RNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 682 ~~~h~~~It~l~fspd~~~~l~sgs~D------g~I~IwD~~~~~-~~~~~~--~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
.......++|+|++ ..|+++... +.|++|+..... .....+ ........++++++|++.++. .+ .
T Consensus 186 ---~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-g 259 (305)
T 3dr2_A 186 ---DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-G 259 (305)
T ss_dssp ---EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-E
T ss_pred ---cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-c
Confidence 12346789999998 555555444 789999854321 111111 122334568899999955544 44 4
Q ss_pred EEEEEcC
Q 002086 753 VYVWKRE 759 (969)
Q Consensus 753 I~IWdl~ 759 (969)
|++|+..
T Consensus 260 v~~~~~~ 266 (305)
T 3dr2_A 260 VCVFDSD 266 (305)
T ss_dssp EEEECTT
T ss_pred EEEECCC
Confidence 9999874
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.4e-06 Score=96.84 Aligned_cols=194 Identities=12% Similarity=0.084 Sum_probs=124.7
Q ss_pred EEEecC-CcEEEEEe----------CCCcEEEEECCCCcEEEEeec--------CCCeEEEEEecCCCCEEEEEEC--CC
Q 002086 559 DLSWSR-SHLLLSSS----------MDKTVRLWDMETKSCLKLFAH--------NDYVTCIQFNPMDDDYFISGSL--DA 617 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs----------~DgtV~IWDl~t~~~i~~~~h--------~~~V~sv~fsp~~~~~L~sgs~--Dg 617 (969)
.+.++| +++|+++. .++.|.++|..+++.+..+.- ......+.|+| ++++++++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence 688898 66666664 477999999999999887643 23456889999 9999998874 57
Q ss_pred eEEEEeCCCceEEEEecCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCe-EEEEEc
Q 002086 618 KVRIWSISDRLVVDWTDLHEMVTAACYTPDG-QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI-TGFQFS 695 (969)
Q Consensus 618 ~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg-~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I-t~l~fs 695 (969)
.|.+.|+.+++++..+..... ....|++ ..+++.+.||.+.+.++.+++...... ........++ ..+.|.
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~----~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT----EVFHTEDELLINHPAFS 273 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC----CCCSCTTSCBCSCCEEC
T ss_pred eEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee----eeeccCCCceeeEeeec
Confidence 899999999998876665442 2334443 566677788888888885555432110 0001111111 235678
Q ss_pred CCCCceEEEEeCCCcEEEEeCCcceEE----EEeec--------CCCCeEEEEEeCCCCEEEEEeC----------CCcE
Q 002086 696 PSNPSEVLVTSADSRIRILDGLDIVHK----FRGFR--------NTSSQISAAFNADGKYIISASE----------DSQV 753 (969)
Q Consensus 696 pd~~~~l~sgs~Dg~I~IwD~~~~~~~----~~~~~--------~~~~V~sl~fspdg~~LaSgs~----------Dg~I 753 (969)
+++ ..++..+..+.|++.|....... +.... .......++|+||+++|+.... ++.|
T Consensus 274 ~dg-~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~V 352 (426)
T 3c75_H 274 LRS-GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFV 352 (426)
T ss_dssp TTT-CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEE
T ss_pred CCC-CEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEE
Confidence 887 45555567889999996432211 11000 0111123689999987777642 3479
Q ss_pred EEEEcCCC
Q 002086 754 YVWKREEH 761 (969)
Q Consensus 754 ~IWdl~t~ 761 (969)
.+.|+.+.
T Consensus 353 sVID~~T~ 360 (426)
T 3c75_H 353 VVLNAETG 360 (426)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 99999884
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.4e-06 Score=103.21 Aligned_cols=188 Identities=10% Similarity=0.057 Sum_probs=124.9
Q ss_pred CCcEEEEECCCCcEEEEeecCCC---------------------------------eEEEEEecCCCCEEEEEECCC---
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDY---------------------------------VTCIQFNPMDDDYFISGSLDA--- 617 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~---------------------------------V~sv~fsp~~~~~L~sgs~Dg--- 617 (969)
++.|+.||..+|+.+..+..... ...++++| +.++++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 79999999999999877632111 13578888 778888877664
Q ss_pred ----------------eEEEEeCCCceEEEEecC--C--------CCEEEEEEccCC---CEEEEEeCCCcEEEEEcCCC
Q 002086 618 ----------------KVRIWSISDRLVVDWTDL--H--------EMVTAACYTPDG---QNALIGSHKGSCRLYSIEDS 668 (969)
Q Consensus 618 ----------------~I~IWDl~~~~~~~~~~~--~--------~~V~sv~fspdg---~~Lasgs~dg~I~IwDl~~~ 668 (969)
.|..+|..+++++-.+.. + .....+....+| ..+++++.+|.++++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999987754332 1 123334444577 67889999999999999999
Q ss_pred ceeeeeeeeecc---cccCCCCC------------------------eEEEEEcCCCCceEEEEeC--------------
Q 002086 669 KLHQLNQVDFQT---KKKSSTRK------------------------ITGFQFSPSNPSEVLVTSA-------------- 707 (969)
Q Consensus 669 ~~~~~~~~~~~~---~~~~h~~~------------------------It~l~fspd~~~~l~sgs~-------------- 707 (969)
+++....+.... ........ -..++|+|+. .++++...
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~ 426 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT-GLVYLPAQNVPVNLMDDKKWEF 426 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT-TEEEEEEEECCCEEEECTTCCT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC-CEEEEeChhcceeeeccccccc
Confidence 886543321100 00000000 1256788877 45555432
Q ss_pred -----------------------------CCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 708 -----------------------------DSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 708 -----------------------------Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
.+.|..||..+........ +...+....+..++.+++.++.||.|++||+
T Consensus 427 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 427 NQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp TCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred ccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 2779999987766555443 2233445556778889999999999999999
Q ss_pred CCCCcc
Q 002086 759 EEHRNA 764 (969)
Q Consensus 759 ~t~~~~ 764 (969)
.+++.+
T Consensus 506 ~tG~~l 511 (677)
T 1kb0_A 506 ATGEKL 511 (677)
T ss_dssp TTCCEE
T ss_pred CCCcee
Confidence 995443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-07 Score=107.93 Aligned_cols=219 Identities=11% Similarity=0.015 Sum_probs=114.6
Q ss_pred CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeee
Q 002086 462 DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFS 541 (969)
Q Consensus 462 Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 541 (969)
++.+|++++.|+.|..||..+|+.+-.+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------------------- 37 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------------------- 37 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence 577899999999999999999988764321
Q ss_pred cCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecC--CCeEE-EEEecCCCCEEEEEECCC
Q 002086 542 LSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHN--DYVTC-IQFNPMDDDYFISGSLDA 617 (969)
Q Consensus 542 ~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~--~~V~s-v~fsp~~~~~L~sgs~Dg 617 (969)
+.+.+..+.. +..+++++.|+.|+.||..+++.+..+... ..+.+ ..+. .+..+++++.|+
T Consensus 38 -------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg 102 (369)
T 2hz6_A 38 -------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQD 102 (369)
T ss_dssp -------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEE
T ss_pred -------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCCC
Confidence 0011111112 456777789999999999998876655321 11110 0111 345788888899
Q ss_pred eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 618 KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 618 ~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
.|+.||..+++.+....... ...++|++..+++++.++.|+.||..+++......... .....+..+
T Consensus 103 ~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~----------~~~~~~~~~ 169 (369)
T 2hz6_A 103 IWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD----------YAASLPEDD 169 (369)
T ss_dssp EEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE----------ECCBCCCCC
T ss_pred EEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc----------ccCccccCC
Confidence 99999999998775544433 23456788899999999999999999987644322110 011122221
Q ss_pred C--CceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEE-EEEeCCCCEE----EEEeCCCcEEEEEcCCC
Q 002086 698 N--PSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQIS-AAFNADGKYI----ISASEDSQVYVWKREEH 761 (969)
Q Consensus 698 ~--~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~s-l~fspdg~~L----aSgs~Dg~I~IWdl~t~ 761 (969)
. ...+++++.++.|+.||..+........ ...++.. ..++++|... +.+ ++.++++|..++
T Consensus 170 ~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG 237 (369)
T 2hz6_A 170 VDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSG 237 (369)
T ss_dssp TTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHH
T ss_pred ccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCceEeccceeec--ccceeeeehhcC
Confidence 1 1367788999999999977655544433 2333432 3444555432 111 334555555443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-05 Score=88.59 Aligned_cols=180 Identities=8% Similarity=0.025 Sum_probs=118.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeE------EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCC
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVT------CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEM 638 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~------sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~ 638 (969)
+..++.++.++.|..+|..+++.+..+.....+. .... .+..++.+..++.|..+|..+++.+........
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~ 219 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA 219 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence 4678888999999999999999887775443332 2222 246788888899999999999887654433211
Q ss_pred E-----E---EEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 639 V-----T---AACYTP--DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 639 V-----~---sv~fsp--dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
. . .+...| .+..+++++.++.+..+|..+++...... ......+... + ..+++++.+
T Consensus 220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~----------~~~~~~~~~~--~-~~l~~~~~~ 286 (376)
T 3q7m_A 220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE----------LGSVNDFIVD--G-NRIYLVDQN 286 (376)
T ss_dssp ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC----------CCCEEEEEEE--T-TEEEEEETT
T ss_pred CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc----------CCCCCCceEE--C-CEEEEEcCC
Confidence 0 0 010111 35678888889999999999988653321 1223444443 3 578888899
Q ss_pred CcEEEEeCCcceEEEEeec-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 709 SRIRILDGLDIVHKFRGFR-NTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 709 g~I~IwD~~~~~~~~~~~~-~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+.|+.+|..+......... ....+..... .+..|+.++.+|.|+++|..+++
T Consensus 287 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 287 DRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp CCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred CeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 9999999776655544331 1112222222 35688899999999999998843
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3e-06 Score=103.98 Aligned_cols=195 Identities=17% Similarity=0.159 Sum_probs=124.9
Q ss_pred cCCCCEEEEEecC-CcEEEEE-----eCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC--------
Q 002086 552 GHLDDVLDLSWSR-SHLLLSS-----SMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA-------- 617 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~Sg-----s~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg-------- 617 (969)
+|...+..++|+| +++|+.+ +...+|++||+.+++.+...-+......++|+ +++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL--GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE--TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe--CCCEEEEEEecCcccccccc
Confidence 3556788899999 6767643 33357999999999976543221123567898 678787777764
Q ss_pred -----eEEEEeCCCceE--EEEec----CCCCEEEEEEccCCCEEEEEeC----CCcEEEEEcCCCceeeeeeeeecccc
Q 002086 618 -----KVRIWSISDRLV--VDWTD----LHEMVTAACYTPDGQNALIGSH----KGSCRLYSIEDSKLHQLNQVDFQTKK 682 (969)
Q Consensus 618 -----~I~IWDl~~~~~--~~~~~----~~~~V~sv~fspdg~~Lasgs~----dg~I~IwDl~~~~~~~~~~~~~~~~~ 682 (969)
.|++|++.+... ..+.. +...+..+.|+|||++|+.... ...|+++|+.++..... .+
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-~l------ 276 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-TV------ 276 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-EE------
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-EE------
Confidence 399999977531 22222 2345788999999998876443 34899999977632111 00
Q ss_pred cCCCCCeEEEEEcCCCCceEEEEeCC---CcEEEEeCCcce----EEEEeecCCCCeEEEEEeCCCCEEEEEeCCC---c
Q 002086 683 KSSTRKITGFQFSPSNPSEVLVTSAD---SRIRILDGLDIV----HKFRGFRNTSSQISAAFNADGKYIISASEDS---Q 752 (969)
Q Consensus 683 ~~h~~~It~l~fspd~~~~l~sgs~D---g~I~IwD~~~~~----~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg---~ 752 (969)
..+....... +++++..+++.+..+ +.|..+|..... ..+..+ ...+. .|++++++|+....++ .
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--RQQVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--CSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--CCCEE--EEEEECCEEEEEEEECCeeE
Confidence 1223334443 666665666666554 578999976432 233333 33344 8999998887766544 6
Q ss_pred EEEEEcCC
Q 002086 753 VYVWKREE 760 (969)
Q Consensus 753 I~IWdl~t 760 (969)
|++|++..
T Consensus 352 l~~~d~~g 359 (693)
T 3iuj_A 352 VEQFDYEG 359 (693)
T ss_dssp EEEECTTS
T ss_pred EEEEECCC
Confidence 88998875
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.45 E-value=3.9e-05 Score=81.60 Aligned_cols=199 Identities=10% Similarity=0.068 Sum_probs=132.7
Q ss_pred ceeeeEecccccC--EEEEEEeCCCCEEEEEeCCC--cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 441 LHLCQEIQAHEGS--IWTIKFSLDARFLASAGEDR--VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 441 ~~l~~~L~gH~~~--I~~l~fSpDg~~LaTgs~Dg--tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
.+.++++ .|... ...|.|+ ++.++.+.+.+| .|+++|+.+++.+.......
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----------------------- 85 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK----------------------- 85 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-----------------------
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-----------------------
Confidence 4556666 45544 4889999 778888888776 99999999999887532110
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY 596 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~ 596 (969)
..---.+.+..+.+.+..-.++.+.++|..+.+.+..+.....
T Consensus 86 -------------------------------------~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e 128 (262)
T 3nol_A 86 -------------------------------------RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE 128 (262)
T ss_dssp -------------------------------------TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred -------------------------------------ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC
Confidence 0001123333344444555689999999999999999976554
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
-+.+++ ++..|+....++.|.++|..+.+++...... ..++.+.|. +|+.++..-.++.|.+.|..+++.
T Consensus 129 G~glt~---dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 129 GWGLTH---NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKV 204 (262)
T ss_dssp CCCEEE---CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBE
T ss_pred ceEEec---CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcE
Confidence 455554 5566666556788999999998776554331 335567776 676555555788999999999998
Q ss_pred eeeeeeeeccc----ccCCCCCeEEEEEcCCCCceEEEE
Q 002086 671 HQLNQVDFQTK----KKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 671 ~~~~~~~~~~~----~~~h~~~It~l~fspd~~~~l~sg 705 (969)
.....+.-... ......-.++|+|+|++..++++|
T Consensus 205 ~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 205 TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 76654421111 112235678999999885555554
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-08 Score=112.85 Aligned_cols=179 Identities=15% Similarity=0.115 Sum_probs=101.7
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC--CCEE-E
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH--EMVT-A 641 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~--~~V~-s 641 (969)
+..+++++.|+.|+.||..+|+.+..+.. +.+.+..+.. ++..+++++.||.|+.||..+++.+...... ..+. .
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 68999999999999999999999988765 6666655655 6667888889999999999888765433222 1110 0
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE
Q 002086 642 ACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH 721 (969)
Q Consensus 642 v~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~ 721 (969)
..+. .+..+++++.++.|+.||..+++....... +. ...++|++ ..+++++.|+.|+.||..+...
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~--------~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS--------AF----ADSLSPST-SLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC--------CC----cccccccC-CEEEEEecCCEEEEEECCCCCE
Confidence 0111 345778888999999999999886543211 11 13455655 6888899999999999654332
Q ss_pred --EEEeecCCCCeEEEEEeCCC---CEEEEEeCCCcEEEEEcCCCCc
Q 002086 722 --KFRGFRNTSSQISAAFNADG---KYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 722 --~~~~~~~~~~V~sl~fspdg---~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
.+..... ....+..+. ..+++++.||.|+.||..+++.
T Consensus 153 ~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 153 RWNATYFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEeEecccc----cCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 2221111 122333332 5677788999999999998543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.2e-05 Score=83.50 Aligned_cols=197 Identities=9% Similarity=0.056 Sum_probs=135.1
Q ss_pred eeeeEecccccC--EEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 442 HLCQEIQAHEGS--IWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 442 ~l~~~L~gH~~~--I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
+.++++ .|... ...|.|+ ++.++++.+.+|.|+++|+.+++.+... ..
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--------------------------- 93 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL--------------------------- 93 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC---------------------------
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC---------------------------
Confidence 455666 35443 5789998 4678888889999999999998876632 00
Q ss_pred ccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEE
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTC 599 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~s 599 (969)
...---.+++..+.+.+..-.++.+.+||..+.+.+..+.....-+.
T Consensus 94 ---------------------------------~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwG 140 (268)
T 3nok_A 94 ---------------------------------GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWG 140 (268)
T ss_dssp ---------------------------------TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCC
T ss_pred ---------------------------------CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeE
Confidence 00001124444455555666789999999999999999976655566
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
+++ ++..|+.+..++.|.++|..+.+++...... ..++.+.|. +|+.++..-.++.|.+.|..+++....
T Consensus 141 Lt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 141 LCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV 216 (268)
T ss_dssp EEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred Eec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence 665 5677777777899999999998776544332 245677777 675554444688999999999998766
Q ss_pred eeeeeccc-----ccCCCCCeEEEEEcCCCCceEEEE
Q 002086 674 NQVDFQTK-----KKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 674 ~~~~~~~~-----~~~h~~~It~l~fspd~~~~l~sg 705 (969)
..+.-... ......-.++|+|+|++..++++|
T Consensus 217 Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 217 IDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 55431110 122345678999999886666665
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00016 Score=77.08 Aligned_cols=195 Identities=8% Similarity=0.037 Sum_probs=125.3
Q ss_pred CCEEEEEecC-CcEEE-EEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCC-EEEEEECCCeEEEEeCCCceEE
Q 002086 555 DDVLDLSWSR-SHLLL-SSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDD-YFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~-Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~-~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
..+.+++|++ ++.|+ +-...+.|..+++........+. .......+++++ ++. ++++-...+.|.++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH-LGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEe-cCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 3567899987 55444 55567899999998766544443 235789999998 544 4555556789999998765433
Q ss_pred EEecC-CCCEEEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 631 DWTDL-HEMVTAACYTPDGQNALIGSH---KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 631 ~~~~~-~~~V~sv~fspdg~~Lasgs~---dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
.+... ......++++|++..|+++.. .+.|..+++......... .........+++++++..++++-.
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~--------~~~~~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA--------QDNLGLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE--------CTTCSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE--------ECCCCCCcEEEEcCCCCEEEEEEC
Confidence 33322 256789999997666665553 468888888654321110 122346789999998755666667
Q ss_pred CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCCC
Q 002086 707 ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREEH 761 (969)
Q Consensus 707 ~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t~ 761 (969)
..+.|.++|.......... ........+++. +.+|+.+. ..+.|.++|..++
T Consensus 187 ~~~~I~~~~~~g~~~~~~~-~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVL-EGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp TTTEEEEEETTEEEEEEEE-ECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred CCCEEEEEecCCCceEEEe-cCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence 7789999997643221111 122234566654 44555444 5688999998873
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.38 E-value=5.4e-05 Score=84.83 Aligned_cols=181 Identities=12% Similarity=0.054 Sum_probs=119.1
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEE-EEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEE---
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTC-IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVT--- 640 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~s-v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~--- 640 (969)
+..++.++.++.|..+|..+++.+..+.....+.+ ... .+..+++++.++.|..+|..+++.+........+.
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 57888899999999999999998877644433322 222 25688888999999999999998776555433321
Q ss_pred ---EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccc-------cCCCCCeEEEEEcCCCCceEEEEeCCCc
Q 002086 641 ---AACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK-------KSSTRKITGFQFSPSNPSEVLVTSADSR 710 (969)
Q Consensus 641 ---sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~-------~~h~~~It~l~fspd~~~~l~sgs~Dg~ 710 (969)
..... +..+++++.++.+..+|..+++............. .....++ +. + ..+++++.++.
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~----~~--~-~~v~~~~~~g~ 250 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV----VV--N-GVVFALAYNGN 250 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE----EE--T-TEEEEECTTSC
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE----EE--C-CEEEEEecCcE
Confidence 12222 45788888899999999999887544332110000 0001111 11 2 47888888999
Q ss_pred EEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 711 IRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 711 I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
|+.+|..+......... .....+.. ++..|+.++.++.|+.+|..++
T Consensus 251 l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 251 LTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp EEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred EEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence 99999776554444321 22333333 4678888889999999999884
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.37 E-value=9.6e-06 Score=90.29 Aligned_cols=202 Identities=8% Similarity=0.027 Sum_probs=130.9
Q ss_pred ccccCEEEEEEeCCCCEEEEEeC-----CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 449 AHEGSIWTIKFSLDARFLASAGE-----DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs~-----DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+|-..+.+|+|+++|+++++-.. ++.|.+||+.+++++..+.....
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~----------------------------- 114 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP----------------------------- 114 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT-----------------------------
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh-----------------------------
Confidence 56778999999999987666543 57899999999887654321100
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEe---CCCcEEEEECCCCcEEEEee-c----
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSS---MDKTVRLWDMETKSCLKLFA-H---- 593 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs---~DgtV~IWDl~t~~~i~~~~-h---- 593 (969)
...+...+..+++.+ +. .+++.. .++.|.+||+.+++....+. |
T Consensus 115 --------------------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 115 --------------------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA 168 (343)
T ss_dssp --------------------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred --------------------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence 001223456788875 34 445554 67899999999888766542 1
Q ss_pred -------------------------CCCeEEEEEecCCCCEEEEEECCC-eEEEEeCC---Cce--------EEEEecCC
Q 002086 594 -------------------------NDYVTCIQFNPMDDDYFISGSLDA-KVRIWSIS---DRL--------VVDWTDLH 636 (969)
Q Consensus 594 -------------------------~~~V~sv~fsp~~~~~L~sgs~Dg-~I~IWDl~---~~~--------~~~~~~~~ 636 (969)
...+..|+|+| ++..|+.+..++ .|..++.. .+. .+...+..
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 247 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEK 247 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEEC
T ss_pred ccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccC
Confidence 02368899999 888888877766 55555431 110 01122223
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEE
Q 002086 637 EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714 (969)
Q Consensus 637 ~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~Iw 714 (969)
.....++++++|.++++...++.|.+||..+++...... ........+++|.+++ .++++.+..+.+.+|
T Consensus 248 g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-------~~~~~~p~~va~~~~g-~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 248 PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-------DEKLSWTDSFNFGSDG-YLYFDCNQLHHSAPL 317 (343)
T ss_dssp CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-------CGGGSCEEEEEECTTS-CEEEEECCGGGSGGG
T ss_pred CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-------CCceecCCeeEECCCC-cEEEEeCcccccccc
Confidence 345678999999999998899999999985555322211 1124568899999876 566666555444333
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.1e-05 Score=83.41 Aligned_cols=258 Identities=9% Similarity=0.001 Sum_probs=150.3
Q ss_pred cCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCC
Q 002086 452 GSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPD 531 (969)
Q Consensus 452 ~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 531 (969)
....+++|.++|++|+++..++.|..|+..+++......... . . ......+..
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~--~-----~---~~~~~~g~~----------------- 71 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASP--Y-----W---NKAFCENST----------------- 71 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCT--T-----C---CHHHHTTCC-----------------
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccc--c-----c---ccccccccc-----------------
Confidence 345678899999978888889999999887654432110000 0 0 000000000
Q ss_pred cccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-----cCCCeEEEEEecC
Q 002086 532 YVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA-----HNDYVTCIQFNPM 605 (969)
Q Consensus 532 ~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-----h~~~V~sv~fsp~ 605 (969)
..........+.++++.+ +..|+.+...+.|..+|..++....... .......+++.+.
T Consensus 72 ---------------~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~ 136 (322)
T 2fp8_A 72 ---------------DAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR 136 (322)
T ss_dssp ---------------CGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTT
T ss_pred ---------------chhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecC
Confidence 000001123467889986 6677777666668899987654322221 1235788999863
Q ss_pred CCCEEEEEEC-----------------CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCC
Q 002086 606 DDDYFISGSL-----------------DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIG-SHKGSCRLYSIED 667 (969)
Q Consensus 606 ~~~~L~sgs~-----------------Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasg-s~dg~I~IwDl~~ 667 (969)
+++++++-.. ++.|..||..++++............++++++|+.|+++ +..+.|.+|++..
T Consensus 137 ~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 137 TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred CCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 4555555322 367999998877655443333445679999999876665 5568999999886
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC----------CCcEEEEeCCcc-eEEEEeecC--CCCeEE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA----------DSRIRILDGLDI-VHKFRGFRN--TSSQIS 734 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~----------Dg~I~IwD~~~~-~~~~~~~~~--~~~V~s 734 (969)
........+ . . ... ...+++.+++ .++++... .+.|..+|.... ...+..... ...+..
T Consensus 217 ~~~~~~~~~--~---~-~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~ 288 (322)
T 2fp8_A 217 PKKGTAEVL--V---K-IPN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQ 288 (322)
T ss_dssp TTTTCEEEE--E---E-CSS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCE
T ss_pred CcCCccceE--E---e-CCC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceE
Confidence 422111111 0 0 112 7889999988 45555443 467888885432 223332211 234556
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 735 AAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 735 l~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+++ .++.++++....+.|.++++..
T Consensus 289 ~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 289 IQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEE-eCCEEEEeecCCCceEEEeccc
Confidence 666 4666666666788899999875
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00013 Score=76.78 Aligned_cols=199 Identities=10% Similarity=0.048 Sum_probs=133.1
Q ss_pred ceeeeEecccccC--EEEEEEeCCCCEEEEEeCCC--cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 441 LHLCQEIQAHEGS--IWTIKFSLDARFLASAGEDR--VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 441 ~~l~~~L~gH~~~--I~~l~fSpDg~~LaTgs~Dg--tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
.+.++++ .|... ...|.|+. +.++.+.+.+| .|+++|+.+++.+.......
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~----------------------- 63 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP----------------------- 63 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-----------------------
T ss_pred eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-----------------------
Confidence 4556666 46544 66999986 67777777754 89999999999887532110
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY 596 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~ 596 (969)
+ .---.+++..+.+.+..-.++.+.++|..+.+.+..+.....
T Consensus 64 ------------------------------------~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~ 106 (243)
T 3mbr_X 64 ------------------------------------P-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE 106 (243)
T ss_dssp ------------------------------------T-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSC
T ss_pred ------------------------------------C-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC
Confidence 0 000123333345555556789999999999999999976655
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL 670 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~ 670 (969)
-+.++. ++..|+.+..++.|.++|..+.+++...... ..++.+.+. +|+.++..-.+..|.+.|..+++.
T Consensus 107 Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 107 GWALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKV 182 (243)
T ss_dssp CCEEEE---CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBE
T ss_pred ceEEee---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCE
Confidence 566664 4555555566889999999998776544332 345667766 666554454688999999999998
Q ss_pred eeeeeeeecccc-----cCCCCCeEEEEEcCCCCceEEEE
Q 002086 671 HQLNQVDFQTKK-----KSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 671 ~~~~~~~~~~~~-----~~h~~~It~l~fspd~~~~l~sg 705 (969)
.....+.-.... .....-.++|+++|++..++++|
T Consensus 183 ~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 183 VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 766544311111 12234678999999885555555
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-05 Score=86.08 Aligned_cols=180 Identities=14% Similarity=0.109 Sum_probs=114.1
Q ss_pred EecCCcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE-EEecCCCC
Q 002086 561 SWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV-DWTDLHEM 638 (969)
Q Consensus 561 ~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~-~~~~~~~~ 638 (969)
...++..|+.++.++.|..+|.. ++.+..+. ....+.++.+.+ ++.++ .++ +.|..|| .+++.. ........
T Consensus 143 ~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~ 216 (330)
T 3hxj_A 143 IVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWT 216 (330)
T ss_dssp EECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSCEEEEECCSSCC
T ss_pred EEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcc
Confidence 34444567778888999999999 77766653 345567777765 55544 444 7899999 565544 33333456
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc
Q 002086 639 VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718 (969)
Q Consensus 639 V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~ 718 (969)
+.++.+.++|. |.+++.++.+..+|.. ++...... .....+..+.+.+++ .|.+++.++.|..+|. +
T Consensus 217 ~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~~~~~~~--------~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~ 283 (330)
T 3hxj_A 217 VTRPAISEDGT-IYVTSLDGHLYAINPD-GTEKWRFK--------TGKRIESSPVIGNTD--TIYFGSYDGHLYAINP-D 283 (330)
T ss_dssp CSCCEECTTSC-EEEEETTTEEEEECTT-SCEEEEEE--------CSSCCCSCCEECTTS--CEEEECTTCEEEEECT-T
T ss_pred eeceEECCCCe-EEEEcCCCeEEEECCC-CCEeEEee--------CCCCccccceEcCCC--eEEEecCCCCEEEECC-C
Confidence 77888888774 5667778888888753 33322111 111222334455444 7888899999999995 3
Q ss_pred ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 719 IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 719 ~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.............+.++...++|. |..++.+|.+++...+.
T Consensus 284 g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 284 GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 332232222334455677777776 55688899999988765
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.26 E-value=0.001 Score=72.50 Aligned_cols=239 Identities=10% Similarity=0.045 Sum_probs=144.0
Q ss_pred cccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 438 LSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 438 l~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
....+.+.+|..+ ....+++|+++|+++++-..++.|..||.... .....
T Consensus 19 ~~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~---------------------------- 68 (306)
T 2p4o_A 19 LAPAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA---------------------------- 68 (306)
T ss_dssp CCCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE----------------------------
T ss_pred CCCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE----------------------------
Confidence 3445556666543 56789999999998888777888988887642 21100
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCC--CcEEEEECCCCcEEEEee--
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMD--KTVRLWDMETKSCLKLFA-- 592 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~D--gtV~IWDl~t~~~i~~~~-- 592 (969)
.-......+++.+ ++++++.... ..|..+|..+++......
T Consensus 69 ----------------------------------~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~ 114 (306)
T 2p4o_A 69 ----------------------------------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP 114 (306)
T ss_dssp ----------------------------------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred ----------------------------------eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC
Confidence 0112467888988 5554444332 247777888887655442
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce--EEEEe---------cCCCCEEEEEEccCCCEEEEE-eCCCcE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL--VVDWT---------DLHEMVTAACYTPDGQNALIG-SHKGSC 660 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~--~~~~~---------~~~~~V~sv~fspdg~~Lasg-s~dg~I 660 (969)
.......++..+ .+..+++-..++.|+++|...+. +.... ........+ +++++.|+++ ...+.|
T Consensus 115 ~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I 191 (306)
T 2p4o_A 115 DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLL 191 (306)
T ss_dssp TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEE
T ss_pred CccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEE
Confidence 223345566554 44444444468999999987653 22111 011234555 7888766655 457899
Q ss_pred EEEEcCC-CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee-cCCCCeEEEEEe
Q 002086 661 RLYSIED-SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF-RNTSSQISAAFN 738 (969)
Q Consensus 661 ~IwDl~~-~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~-~~~~~V~sl~fs 738 (969)
..|++.. +.......+ . .......+++.+++ .++++....+.|.+++........... ......++++|.
T Consensus 192 ~~~~~~~~g~~~~~~~~--~-----~~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 192 LRIPVDSTDKPGEPEIF--V-----EQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp EEEEBCTTSCBCCCEEE--E-----ESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEEC
T ss_pred EEEEeCCCCCCCccEEE--e-----ccCCCCCeEECCCC-CEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEe
Confidence 9999875 332111110 0 01345668899988 566666677899999965332222222 223557899998
Q ss_pred ---CCCCEEEEEeCCC
Q 002086 739 ---ADGKYIISASEDS 751 (969)
Q Consensus 739 ---pdg~~LaSgs~Dg 751 (969)
||++.|+.++..+
T Consensus 264 g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 264 QTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CSTTTTTEEEEEECTT
T ss_pred cccCCCCEEEEECCCC
Confidence 8888777766544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-05 Score=93.75 Aligned_cols=186 Identities=9% Similarity=0.048 Sum_probs=121.7
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC-----------------------------------
Q 002086 573 MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA----------------------------------- 617 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg----------------------------------- 617 (969)
.++.|.+.|..+.+.+..+.-.+....++++| ++.++++.+.+.
T Consensus 173 ~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 173 YVNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EEEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred cCceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 34678999999998888875544667788999 888888887553
Q ss_pred ---eEEEEeCCC--ceE-EEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeee---cccccCCCC
Q 002086 618 ---KVRIWSISD--RLV-VDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDF---QTKKKSSTR 687 (969)
Q Consensus 618 ---~I~IWDl~~--~~~-~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~---~~~~~~h~~ 687 (969)
.|.|.|..+ +.. +..........++.++|||+++++++ .+.+|.++|+.+.+......+.. ......-..
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~ 331 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL 331 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred EECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence 366777766 333 34444445667899999999888765 68899999998653100000000 000122345
Q ss_pred CeEEEEEcCCCCceEEEEeCCCcEEEEeCCc------------ceEEEEeecCCCCe---EEEEEeCCCCEEEEEeC---
Q 002086 688 KITGFQFSPSNPSEVLVTSADSRIRILDGLD------------IVHKFRGFRNTSSQ---ISAAFNADGKYIISASE--- 749 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~------------~~~~~~~~~~~~~V---~sl~fspdg~~LaSgs~--- 749 (969)
....++|+|+| ..+++.-.|++|.+||... .+.++..+...+.. ..+.++|||++|+++..
T Consensus 332 gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk 410 (595)
T 1fwx_A 332 GPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK 410 (595)
T ss_dssp CEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred CcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence 68899999999 7777888999999999543 22233322111101 12345899999999865
Q ss_pred CCcE----------EEEEcCC
Q 002086 750 DSQV----------YVWKREE 760 (969)
Q Consensus 750 Dg~I----------~IWdl~t 760 (969)
|+.+ .++|+..
T Consensus 411 dr~~~~gp~~~~~~ql~dis~ 431 (595)
T 1fwx_A 411 DRFLNVGPLKPENDQLIDISG 431 (595)
T ss_dssp TSSCCCCSSCCEEEEEEECSS
T ss_pred cccccCCCCCCCcceEEEcCC
Confidence 4331 8899965
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00016 Score=77.43 Aligned_cols=197 Identities=10% Similarity=0.033 Sum_probs=131.4
Q ss_pred CEEEEEecC-CcEEEEEeC--CCcEEEEECCCCcEEEEeecC--CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 556 DVLDLSWSR-SHLLLSSSM--DKTVRLWDMETKSCLKLFAHN--DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs~--DgtV~IWDl~t~~~i~~~~h~--~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
....+.|++ +.++++.+. ++.|.+.|+.+++.+..+... .....+++. .+.++++.-.++.+.++|..+.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 367999998 544444443 689999999999999887432 233456665 2445555556789999999999887
Q ss_pred EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc
Q 002086 631 DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR 710 (969)
Q Consensus 631 ~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~ 710 (969)
..+... .-....++++|+.++++..++.|.++|..+.+......+... ......+..+.|. ++ ..++....++.
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~---~~p~~~~nele~~-dg-~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN---GHRVIRLNELEYI-NG-EVWANIWQTDC 173 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET---TEECCCEEEEEEE-TT-EEEEEETTSSE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC---CcccccceeEEEE-CC-EEEEecCCCCe
Confidence 766443 111244666888888777889999999999877654433210 1122346778887 45 45555556789
Q ss_pred EEEEeCCcce--EEEEeec-----------CCCCeEEEEEeCCCCE-EEEEeCCCcEEEEEcCC
Q 002086 711 IRILDGLDIV--HKFRGFR-----------NTSSQISAAFNADGKY-IISASEDSQVYVWKREE 760 (969)
Q Consensus 711 I~IwD~~~~~--~~~~~~~-----------~~~~V~sl~fspdg~~-LaSgs~Dg~I~IWdl~t 760 (969)
|.+.|..+.. ..+.... .......++|+|+++. ++++...+.|++-++..
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 9999976543 3333211 1124579999999865 55666788899998876
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=3.6e-05 Score=94.06 Aligned_cols=192 Identities=10% Similarity=-0.027 Sum_probs=118.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecC------CCeEEEEEecCCCCEEEEEEC------CCeEEEEeCCCceEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHN------DYVTCIQFNPMDDDYFISGSL------DAKVRIWSISDRLVVDW 632 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~------~~V~sv~fsp~~~~~L~sgs~------Dg~I~IWDl~~~~~~~~ 632 (969)
+..|+.++.|+.|..+|..+|+.+..+... ..+.+.-.. .+..+++++. +|.|+.||..+++++-.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 478888899999999999999998877432 122221111 2455555543 79999999999987754
Q ss_pred ecCCC---------------------------------CEEEEEEccCCCEEEEEeCCC-------------------cE
Q 002086 633 TDLHE---------------------------------MVTAACYTPDGQNALIGSHKG-------------------SC 660 (969)
Q Consensus 633 ~~~~~---------------------------------~V~sv~fspdg~~Lasgs~dg-------------------~I 660 (969)
..... ....++++|++..|++++.++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 33211 113578899999999887764 59
Q ss_pred EEEEcCCCceeeeeeeeeccc-ccCCCCCeEEEEEcCCCC--ceEEEEeCCCcEEEEeCCcceEEEEeecCC--------
Q 002086 661 RLYSIEDSKLHQLNQVDFQTK-KKSSTRKITGFQFSPSNP--SEVLVTSADSRIRILDGLDIVHKFRGFRNT-------- 729 (969)
Q Consensus 661 ~IwDl~~~~~~~~~~~~~~~~-~~~h~~~It~l~fspd~~--~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~-------- 729 (969)
..+|..+++..-..+...... ..........+....++. ..++.++.+|.|+++|..+...........
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 999999998765443211000 000012222233333442 478888999999999976544433221110
Q ss_pred ---CCe------------------------EEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 730 ---SSQ------------------------ISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 730 ---~~V------------------------~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
..+ ..++|+|++.+|++...+-...+|..
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~ 421 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDD 421 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEEC
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecc
Confidence 000 14688999989888776644444443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00065 Score=84.41 Aligned_cols=199 Identities=8% Similarity=0.192 Sum_probs=134.6
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee--------cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA--------HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~--------h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
..|.++...++..|..|+.++-|.+||..+++...... ....|.++...+ ++.+.+ |+.+ -|.+||..+
T Consensus 215 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~ 291 (795)
T 4a2l_A 215 KQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLWI-GTFN-DLNIYHEGT 291 (795)
T ss_dssp CCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEEE-EESS-CEEEEETTT
T ss_pred CeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEEE-EeCC-hhheEcCCC
Confidence 45777777665667777766569999998876554331 135699999987 565544 4455 589999988
Q ss_pred ceEEEEec--------CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 627 RLVVDWTD--------LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 627 ~~~~~~~~--------~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
+....... ....|.++...++|. |.+|+.++-|.+|+............. .........|.++...+++
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~--~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIP--YKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCT--TSSSCSCSSEEEEEECTTS
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCC--CCCCCCCCeeEEEEECCCC
Confidence 87665532 125699999999886 556778888999987665433221110 0111234569999988876
Q ss_pred CceEEEEeCCCcEEEEeCCcce-EEEEee-------cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 699 PSEVLVTSADSRIRILDGLDIV-HKFRGF-------RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 699 ~~~l~sgs~Dg~I~IwD~~~~~-~~~~~~-------~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.|.+|+.++.|..|+..... ..+... .....|.++...++|.+|..|+.++-|.+||..++
T Consensus 369 --~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 369 --NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp --CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred --CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 67778888889999965432 222211 12356889999999986777887788999998764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-05 Score=87.70 Aligned_cols=174 Identities=17% Similarity=0.087 Sum_probs=113.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe-cCCCCEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT-DLHEMVTAA 642 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-~~~~~V~sv 642 (969)
+..|..++.++.|..+|.. ++....+. ....+.++...+ ++ .|+.++.++.|..||.. ++.+... .....+.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 5778888999999999998 77665553 444566667765 44 46667888999999999 6554333 334456677
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE
Q 002086 643 CYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK 722 (969)
Q Consensus 643 ~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~ 722 (969)
.+.+++..+ +++ +.|..|| .+++..... ......+.++.+.+++ .|.+++.++.|..+|..... .
T Consensus 183 ~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~--------~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~g~~-~ 247 (330)
T 3hxj_A 183 SIGKDGTIY-FGS--DKVYAIN-PDGTEKWNF--------YAGYWTVTRPAISEDG--TIYVTSLDGHLYAINPDGTE-K 247 (330)
T ss_dssp EECTTCCEE-EES--SSEEEEC-TTSCEEEEE--------CCSSCCCSCCEECTTS--CEEEEETTTEEEEECTTSCE-E
T ss_pred EEcCCCEEE-EEe--CEEEEEC-CCCcEEEEE--------ccCCcceeceEECCCC--eEEEEcCCCeEEEECCCCCE-e
Confidence 777777644 444 8899999 555543221 1223457777787765 67778888889999843222 2
Q ss_pred EEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 723 FRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 723 ~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
.........+..+.+.+++ .|..++.+|.|+.+|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 248 WRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred EEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 2222222223345555555 5667788888999985
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.2e-05 Score=90.20 Aligned_cols=186 Identities=13% Similarity=0.140 Sum_probs=128.9
Q ss_pred CcEEEEE-eCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEe--cCCCCEEEEEE------------------CCCeEEE
Q 002086 565 SHLLLSS-SMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFN--PMDDDYFISGS------------------LDAKVRI 621 (969)
Q Consensus 565 ~~~L~Sg-s~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fs--p~~~~~L~sgs------------------~Dg~I~I 621 (969)
+++|... ..+..|.+.|+.+.++.+++ .....+..+++. | ++.++++++ .++.+.+
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 3454444 45677999999999998855 455678899984 7 888888885 2467999
Q ss_pred EeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC--------------------------------------cEEEE
Q 002086 622 WSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG--------------------------------------SCRLY 663 (969)
Q Consensus 622 WDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg--------------------------------------~I~Iw 663 (969)
+|..+.++............++++|+|+++++.+.+. .|.+.
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 9999998877665544567788999999999988553 24444
Q ss_pred EcCC--Cce-eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce-----------EEEEeecCC
Q 002086 664 SIED--SKL-HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV-----------HKFRGFRNT 729 (969)
Q Consensus 664 Dl~~--~~~-~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~-----------~~~~~~~~~ 729 (969)
|..+ ++. .... .-.....++.++|||...++++..+.+|.++|..+.. .......-.
T Consensus 260 D~~~~~~~~~~~~I---------pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 260 DGRKEASSLFTRYI---------PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp ECSGGGCCSSEEEE---------EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred eCcccCCceeEEEE---------ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence 4443 111 1110 0123456789999996566666788999999977542 122222333
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 730 SSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 730 ~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.....++|+++|...++.-.|+.|.+||+++
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 4567899999994445566799999999976
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0022 Score=79.69 Aligned_cols=244 Identities=10% Similarity=0.093 Sum_probs=160.8
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
...|.+|...++|.+.+. ..+ -|.+||..+++..........
T Consensus 262 ~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~------------------------------------ 303 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVE------------------------------------ 303 (795)
T ss_dssp CSBEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTS------------------------------------
T ss_pred CCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCC------------------------------------
Confidence 457999999998885543 344 488999877665432110000
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-------cCCCeEEEEEe
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA-------HNDYVTCIQFN 603 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-------h~~~V~sv~fs 603 (969)
...-....|.++...+...|..|+.++-|.+|+..++....... ....|.++...
T Consensus 304 ------------------~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 304 ------------------NGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp ------------------TTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred ------------------CCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 00012356889988887778889988889999987665433221 23569999988
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEEEEec---------CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 002086 604 PMDDDYFISGSLDAKVRIWSISDRLVVDWTD---------LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLN 674 (969)
Q Consensus 604 p~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---------~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~ 674 (969)
+ ++. |-.|+.++-|..||..++....+.. ....|.+++..++|..|.+|+.++.|.+||..+++.....
T Consensus 366 ~-~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~ 443 (795)
T 4a2l_A 366 K-DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN 443 (795)
T ss_dssp T-TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC
T ss_pred C-CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee
Confidence 6 555 5557777779999998877655431 1356999999988886778888888999999887654321
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEee------cCCCCeEEEEEeCCCCEEEEEe
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGF------RNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~------~~~~~V~sl~fspdg~~LaSgs 748 (969)
.. ........|.++...+++ .|.+|+. +.|.+||........... .....|.++...++|.+.+...
T Consensus 444 ~~----~~~l~~~~v~~i~~d~~g--~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 516 (795)
T 4a2l_A 444 QR----NSQLVNENVYAILPDGEG--NLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE 516 (795)
T ss_dssp TT----TSCCSCSCEEEEEECSSS--CEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred cC----CCCcCCCeeEEEEECCCC--CEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC
Confidence 10 001234578999988876 4555665 568889865433221111 1235688899999988666554
Q ss_pred CCCcEEEEEcCCC
Q 002086 749 EDSQVYVWKREEH 761 (969)
Q Consensus 749 ~Dg~I~IWdl~t~ 761 (969)
+.|++|+..+.
T Consensus 517 --~Gl~~~~~~~~ 527 (795)
T 4a2l_A 517 --EGLSVFKQEGL 527 (795)
T ss_dssp --SCEEEEEEETT
T ss_pred --CceEEEeCCCC
Confidence 56888887653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=6.9e-05 Score=91.42 Aligned_cols=187 Identities=12% Similarity=0.160 Sum_probs=118.8
Q ss_pred CCcEEEEECCCCcEEEEeecC--C------------------------------CeEEEEEecCCCCEEEEEECCC----
Q 002086 574 DKTVRLWDMETKSCLKLFAHN--D------------------------------YVTCIQFNPMDDDYFISGSLDA---- 617 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~--~------------------------------~V~sv~fsp~~~~~L~sgs~Dg---- 617 (969)
+|.|..+|..+|+.+-.+... . ....+++.| ..++++.+..++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 589999999999988776321 0 112468888 678888887776
Q ss_pred ---------------eEEEEeCCCceEEEEecCC----------CCEEEEEEccCCC---EEEEEeCCCcEEEEEcCCCc
Q 002086 618 ---------------KVRIWSISDRLVVDWTDLH----------EMVTAACYTPDGQ---NALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 618 ---------------~I~IWDl~~~~~~~~~~~~----------~~V~sv~fspdg~---~Lasgs~dg~I~IwDl~~~~ 669 (969)
.|..+|..+++++-.+... .++....+..+|+ .+++++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 3999999999877544321 2333334444665 68889999999999999998
Q ss_pred eeeeeeeeec---cccc-CCCC------------------------CeEEEEEcCCCCceEEEE----------------
Q 002086 670 LHQLNQVDFQ---TKKK-SSTR------------------------KITGFQFSPSNPSEVLVT---------------- 705 (969)
Q Consensus 670 ~~~~~~~~~~---~~~~-~h~~------------------------~It~l~fspd~~~~l~sg---------------- 705 (969)
++....+... .... .... .-..++++|+.. .+++.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~ 414 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDFV 414 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC-EEEEeccccceEeeeeccccc
Confidence 7633221100 0000 0000 011256777653 33321
Q ss_pred --------------------eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 706 --------------------SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 706 --------------------s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
..++.|+.||..+.....+.... .......+...+.+|+.++.||.|++||.++++.
T Consensus 415 ~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 12478999998776665544322 2233334555788999999999999999998544
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00015 Score=88.72 Aligned_cols=180 Identities=11% Similarity=0.114 Sum_probs=115.0
Q ss_pred EEEecC-CcEEEEEeCCCc-------------------EEEEECCCCcEEEEee---cC-------CCeEEEEEecCCCC
Q 002086 559 DLSWSR-SHLLLSSSMDKT-------------------VRLWDMETKSCLKLFA---HN-------DYVTCIQFNPMDDD 608 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs~Dgt-------------------V~IWDl~t~~~i~~~~---h~-------~~V~sv~fsp~~~~ 608 (969)
.+++.+ .++|+.+..++. |..||..+|+.+-.+. |. ..+....... ++.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCc
Confidence 466776 678888877763 9999999999987773 21 1222222222 443
Q ss_pred ---EEEEEECCCeEEEEeCCCceEEEEecCCC--C--------------------------------------EEEEEEc
Q 002086 609 ---YFISGSLDAKVRIWSISDRLVVDWTDLHE--M--------------------------------------VTAACYT 645 (969)
Q Consensus 609 ---~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~--~--------------------------------------V~sv~fs 645 (969)
.++.++.+|.|+++|..+++++....... . -..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999998863221110 0 1126889
Q ss_pred cCCCEEEEEeC---------------------------------------------CCcEEEEEcCCCceeeeeeeeecc
Q 002086 646 PDGQNALIGSH---------------------------------------------KGSCRLYSIEDSKLHQLNQVDFQT 680 (969)
Q Consensus 646 pdg~~Lasgs~---------------------------------------------dg~I~IwDl~~~~~~~~~~~~~~~ 680 (969)
|+..++++... +|.|..||+.+++........
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--- 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--- 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---
Confidence 98888877632 377999999999876443221
Q ss_pred cccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCC-CCeEEEEEeCCCC-EEEEEeC
Q 002086 681 KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNT-SSQISAAFNADGK-YIISASE 749 (969)
Q Consensus 681 ~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~-~~V~sl~fspdg~-~LaSgs~ 749 (969)
.++..-.+...+ .++++++.|+.|+.||..+.....+..... ....-+.|..+|+ |+++.+.
T Consensus 475 ------~~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 475 ------TIFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp ------SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ------CCccCccceECC-CEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 111222333344 588899999999999987766555443222 1123466778886 4454433
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00025 Score=75.42 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=122.5
Q ss_pred EEEEEecCCcEEEEEeCCC--cEEEEECCCCcEEEEeecCCCeEE--EEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 557 VLDLSWSRSHLLLSSSMDK--TVRLWDMETKSCLKLFAHNDYVTC--IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 557 I~~l~fs~~~~L~Sgs~Dg--tV~IWDl~t~~~i~~~~h~~~V~s--v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
...|.|+.+.++.+.+.+| .|+++|+.+++.+....-...... +++. .+.+++..-.++.+.+||..+.+++..
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4788888666667777766 999999999999988855554443 4553 334444455688999999999988876
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEE
Q 002086 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIR 712 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~ 712 (969)
+.....- ..++++++.|+....++.|.++|..+.+......+... ......+..+.|. ++ ..++..-.+..|.
T Consensus 123 i~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~---g~~~~~lNELe~~-~G-~lyan~w~~~~I~ 195 (262)
T 3nol_A 123 FNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH---GEELPELNELEWV-DG-EIFANVWQTNKIV 195 (262)
T ss_dssp EECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET---TEECCCEEEEEEE-TT-EEEEEETTSSEEE
T ss_pred EECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC---CccccccceeEEE-CC-EEEEEEccCCeEE
Confidence 6654322 33446778787777788999999999887655443210 1112345567776 44 5555555688899
Q ss_pred EEeCCcc--eEEEEee----------cCCCCeEEEEEeCCCCEEEEEeC
Q 002086 713 ILDGLDI--VHKFRGF----------RNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 713 IwD~~~~--~~~~~~~----------~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
+.|..+. ...+... ......+.++|+|+++.|+..+.
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9996653 3333321 11124578999998877776664
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0022 Score=68.07 Aligned_cols=176 Identities=5% Similarity=-0.085 Sum_probs=107.2
Q ss_pred CCEEEEEecC-CcE-EEEEeCCCcEEEEECCCCcEEEEeec-CCCeEEEEEecCCCCEEEEEEC---CCeEEEEeCCCce
Q 002086 555 DDVLDLSWSR-SHL-LLSSSMDKTVRLWDMETKSCLKLFAH-NDYVTCIQFNPMDDDYFISGSL---DAKVRIWSISDRL 628 (969)
Q Consensus 555 ~~I~~l~fs~-~~~-L~Sgs~DgtV~IWDl~t~~~i~~~~h-~~~V~sv~fsp~~~~~L~sgs~---Dg~I~IWDl~~~~ 628 (969)
.....+++.+ +.. +++-...+.|.++++........... ......++++| ++..|+.+.. .+.|..+++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence 3467888887 444 44555678999999876543333322 25678999998 6666555544 3689888886543
Q ss_pred EEEEe-cCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 629 VVDWT-DLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 629 ~~~~~-~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
...+. ........+++++++..|.++. ..+.|.++|+......... . .......+++. +..++++..
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~--------~-~~~~P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL--------E-GLQYPFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE--------E-CCCSEEEEEEE--TTEEEEEET
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe--------c-CCCCceEEEEe--CCEEEEEEC
Confidence 33222 2235688999999877666554 5679999999754322111 1 12234566654 334555555
Q ss_pred CCCcEEEEeCCcceEEEEeecCC-CCeEEEEEeCCCC
Q 002086 707 ADSRIRILDGLDIVHKFRGFRNT-SSQISAAFNADGK 742 (969)
Q Consensus 707 ~Dg~I~IwD~~~~~~~~~~~~~~-~~V~sl~fspdg~ 742 (969)
..+.|.++|.............. .....+++.|++.
T Consensus 227 ~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 67899999976543332222221 1345677777753
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00011 Score=83.97 Aligned_cols=188 Identities=9% Similarity=0.057 Sum_probs=125.2
Q ss_pred CcEEEEEeCCCcEEEEECCCC----cEEEEee-------cC-CCeEEEEEecCCCCEEEEEECC------CeEEEEeCCC
Q 002086 565 SHLLLSSSMDKTVRLWDMETK----SCLKLFA-------HN-DYVTCIQFNPMDDDYFISGSLD------AKVRIWSISD 626 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~----~~i~~~~-------h~-~~V~sv~fsp~~~~~L~sgs~D------g~I~IWDl~~ 626 (969)
..+++++..++.|.++|+.+. +..+++. .. .....+.+.| ++ +++++..+ |.|.++|..+
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 356666778899999999765 5666662 11 2455678888 77 77776655 7899999999
Q ss_pred ceEEEEecCC----CCEEEEEEccCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeeeeeeccccc
Q 002086 627 RLVVDWTDLH----EMVTAACYTPDGQNALIGS-------------------HKGSCRLYSIEDSKLHQLNQVDFQTKKK 683 (969)
Q Consensus 627 ~~~~~~~~~~----~~V~sv~fspdg~~Lasgs-------------------~dg~I~IwDl~~~~~~~~~~~~~~~~~~ 683 (969)
.+++...... ...+.+.|+|+++.+++.. ...+|.+||+.+++......+ .
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v------g 247 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL------G 247 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES------C
T ss_pred CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec------C
Confidence 9888766532 2234688899999888874 378999999998765543322 1
Q ss_pred CCCCCeEEEEE--cCCCCceEEEEe-----CCCcEEEEeCCcc----eEEEEeec----C------------CCCeEEEE
Q 002086 684 SSTRKITGFQF--SPSNPSEVLVTS-----ADSRIRILDGLDI----VHKFRGFR----N------------TSSQISAA 736 (969)
Q Consensus 684 ~h~~~It~l~f--spd~~~~l~sgs-----~Dg~I~IwD~~~~----~~~~~~~~----~------------~~~V~sl~ 736 (969)
........+.| +|++...++++- .+++|.+|..... ...+.... . ......+.
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 11123445555 999854455555 6778877652211 11110000 0 23466889
Q ss_pred EeCCCCEEEEEeC-CCcEEEEEcCC
Q 002086 737 FNADGKYIISASE-DSQVYVWKREE 760 (969)
Q Consensus 737 fspdg~~LaSgs~-Dg~I~IWdl~t 760 (969)
+++||++|.++.. .+.|.+||+..
T Consensus 328 lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 328 ISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp ECTTSCEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecC
Confidence 9999999988876 67899999975
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00038 Score=74.03 Aligned_cols=183 Identities=10% Similarity=0.004 Sum_probs=125.2
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeE--EEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe
Q 002086 556 DVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVT--CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT 633 (969)
Q Consensus 556 ~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~--sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~ 633 (969)
-...|.|+.+.++++.+.+|.|+++|+.+++.+..+ -..... .+++. .+.+++..-.++.+.+||..+.+++..+
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 347889987788888899999999999999988776 444443 35554 3556666667899999999999888766
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE
Q 002086 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713 (969)
Q Consensus 634 ~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I 713 (969)
.....-..++ ++++.|+++..++.|.++|..+.+......+... ......++.+.|. ++ ..++..-.+..|.+
T Consensus 133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~---g~~v~~lNeLe~~-dG-~lyanvw~s~~I~v 205 (268)
T 3nok_A 133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR---GQPVELINELECA-NG-VIYANIWHSSDVLE 205 (268)
T ss_dssp ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET---TEECCCEEEEEEE-TT-EEEEEETTCSEEEE
T ss_pred eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC---CcccccccccEEe-CC-EEEEEECCCCeEEE
Confidence 6544333343 5788888888899999999999887655443221 1122345677777 44 55554556788999
Q ss_pred EeCCcc--eEEEEee-----------cCCCCeEEEEEeCCCCEEEEEe
Q 002086 714 LDGLDI--VHKFRGF-----------RNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 714 wD~~~~--~~~~~~~-----------~~~~~V~sl~fspdg~~LaSgs 748 (969)
.|..+. ...+... ......+.++|+|+++.|+..+
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 996653 3333321 1123467899999765555444
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-05 Score=88.65 Aligned_cols=101 Identities=10% Similarity=-0.099 Sum_probs=77.3
Q ss_pred CcEEEEEeCCC----cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEE----------CCCeEEEEeCCCceEE
Q 002086 565 SHLLLSSSMDK----TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGS----------LDAKVRIWSISDRLVV 630 (969)
Q Consensus 565 ~~~L~Sgs~Dg----tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs----------~Dg~I~IWDl~~~~~~ 630 (969)
...+++-..++ +|.+.|..+++.+..+.-...- .+.++| ++.+++++. .++.|.+||+.+++++
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 34455555555 8889999999999988433333 899999 888877775 3688999999999888
Q ss_pred EEecCC--------CCEEEEEEccCCCEEEEEeC--CCcEEE--EEcCC
Q 002086 631 DWTDLH--------EMVTAACYTPDGQNALIGSH--KGSCRL--YSIED 667 (969)
Q Consensus 631 ~~~~~~--------~~V~sv~fspdg~~Lasgs~--dg~I~I--wDl~~ 667 (969)
...... .....++|+|||++++++.. ...+.+ +|+.+
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 765432 33568999999999998875 457888 88866
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0013 Score=69.22 Aligned_cols=186 Identities=13% Similarity=0.012 Sum_probs=123.9
Q ss_pred CCEEEEEecCCcEEEEEeCCC--cEEEEECCCCcEEEEeecCCCeE--EEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 555 DDVLDLSWSRSHLLLSSSMDK--TVRLWDMETKSCLKLFAHNDYVT--CIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~Dg--tV~IWDl~t~~~i~~~~h~~~V~--sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
.-...+.|+++.++.+.+.+| .|+.+|+.+++.+....-..... .+++. .+.+++..-.++.+.+||..+.+++
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEE
Confidence 346689999877777777754 89999999999998885544443 34443 3455555667899999999999888
Q ss_pred EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc
Q 002086 631 DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR 710 (969)
Q Consensus 631 ~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~ 710 (969)
..+.....-..+ .+++..|+++..++.|.++|..+.+......+... ......++.+.+. ++ ..++..-.+..
T Consensus 99 ~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~---g~~~~~lNeLe~~-~G-~lyanvw~s~~ 171 (243)
T 3mbr_X 99 ARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG---GRPLDNLNELEWV-NG-ELLANVWLTSR 171 (243)
T ss_dssp EEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEET---TEECCCEEEEEEE-TT-EEEEEETTTTE
T ss_pred EEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC---CcccccceeeEEe-CC-EEEEEECCCCe
Confidence 776655433344 45777777777789999999999887655443211 1112345666665 34 44544446778
Q ss_pred EEEEeCCcce--EEEEee-----------cCCCCeEEEEEeCCCCEEEEEeC
Q 002086 711 IRILDGLDIV--HKFRGF-----------RNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 711 I~IwD~~~~~--~~~~~~-----------~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
|.+.|..+.. ..+... ......+.++++|+++.|+..+.
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9999966533 333321 11234578999998776666553
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.002 Score=68.48 Aligned_cols=207 Identities=12% Similarity=0.205 Sum_probs=135.8
Q ss_pred EeccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEECCCCcEEEEeec--CCCeEEEEEecCCCCEEEEEECCCeEEEEeC
Q 002086 549 SFIGHLDDVLDLSWSR-S-HLLLSSSMDKTVRLWDMETKSCLKLFAH--NDYVTCIQFNPMDDDYFISGSLDAKVRIWSI 624 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~-~~L~Sgs~DgtV~IWDl~t~~~i~~~~h--~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl 624 (969)
.+.+-...+..++|+| + .++++...++.|...|.. ++.+..+.. ....-.|++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 3455667899999998 4 456667889999999998 888877633 35788899987 6666666556788999987
Q ss_pred CCce---EEEEe-------cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec--ccccCCCCCeEEE
Q 002086 625 SDRL---VVDWT-------DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ--TKKKSSTRKITGF 692 (969)
Q Consensus 625 ~~~~---~~~~~-------~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~--~~~~~h~~~It~l 692 (969)
.... .+... ..+.....++|+|.++.|+++.+.....||.+..........+... .........+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 6533 12222 1224468999999998888888776666666652100000111000 0112234568999
Q ss_pred EEcCCCCceEEEEeCCCcEEEEeCCcce-EEEEeecC-------CCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 693 QFSPSNPSEVLVTSADSRIRILDGLDIV-HKFRGFRN-------TSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 693 ~fspd~~~~l~sgs~Dg~I~IwD~~~~~-~~~~~~~~-------~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
+++|....+++.......|.++|..... ..+..... ...-..|+|.++|++.++ ++-+.+++|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 9999887788888888889999965433 22322211 124568999999985555 77776666643
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00091 Score=73.26 Aligned_cols=195 Identities=11% Similarity=0.029 Sum_probs=125.0
Q ss_pred ccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee--------------------cCCCeEEEEEecCCCCE
Q 002086 551 IGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA--------------------HNDYVTCIQFNPMDDDY 609 (969)
Q Consensus 551 ~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~--------------------h~~~V~sv~fsp~~~~~ 609 (969)
.+.-....+++|.+ +.+++++..++.|..||..++....... ....+.+|++.+ ++..
T Consensus 15 ~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~ 93 (322)
T 2fp8_A 15 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQ 93 (322)
T ss_dssp ECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTE
T ss_pred CCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCc
Confidence 33334456788887 5668888899999999988765443221 113578999986 4556
Q ss_pred EEEEECCCeEEEEeCCCceEEEEecC-----CCCEEEEEEcc-CCCEEEEEeC-----------------CCcEEEEEcC
Q 002086 610 FISGSLDAKVRIWSISDRLVVDWTDL-----HEMVTAACYTP-DGQNALIGSH-----------------KGSCRLYSIE 666 (969)
Q Consensus 610 L~sgs~Dg~I~IWDl~~~~~~~~~~~-----~~~V~sv~fsp-dg~~Lasgs~-----------------dg~I~IwDl~ 666 (969)
|+.+...+.|..+|..++.+..+... ......+++.+ +|.++++-.. ++.|..||..
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 66666666689999887654333211 13478899999 9977666432 3678888887
Q ss_pred CCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc----ceEEEEeecCCCCeEEEEEeCCCC
Q 002086 667 DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD----IVHKFRGFRNTSSQISAAFNADGK 742 (969)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~----~~~~~~~~~~~~~V~sl~fspdg~ 742 (969)
+++...... .......++|+|++..++++-...+.|++|+... ....+.. ... ...++++++|.
T Consensus 174 ~~~~~~~~~---------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 174 TKETTLLLK---------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGH 241 (322)
T ss_dssp TTEEEEEEE---------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSC
T ss_pred CCEEEEecc---------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCC
Confidence 665432210 1123457899998833445556678999998653 1222221 223 67899999998
Q ss_pred EEEEEeC----------CCcEEEEEc
Q 002086 743 YIISASE----------DSQVYVWKR 758 (969)
Q Consensus 743 ~LaSgs~----------Dg~I~IWdl 758 (969)
+.++... .+.|..++.
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDE 267 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred EEEEecCcccccccCCCccEEEEECC
Confidence 7777654 355666664
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00091 Score=79.91 Aligned_cols=195 Identities=12% Similarity=0.082 Sum_probs=116.9
Q ss_pred cEEEEEeC------CCcEEEEECCCCcEEEEeecCCCe---------------------------------------EEE
Q 002086 566 HLLLSSSM------DKTVRLWDMETKSCLKLFAHNDYV---------------------------------------TCI 600 (969)
Q Consensus 566 ~~L~Sgs~------DgtV~IWDl~t~~~i~~~~h~~~V---------------------------------------~sv 600 (969)
..++.++. ++.|..+|..+|+.+-.+...... ..+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 45555554 799999999999988776332211 235
Q ss_pred EEecCCCCEEEEEECC----------------CeEEEEeCCCceEEEEecCC----------CCEEEEEEccCCC---EE
Q 002086 601 QFNPMDDDYFISGSLD----------------AKVRIWSISDRLVVDWTDLH----------EMVTAACYTPDGQ---NA 651 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~D----------------g~I~IWDl~~~~~~~~~~~~----------~~V~sv~fspdg~---~L 651 (969)
++.+ ....++.+..+ +.|..+|..+++++-..... ....-+....+|+ .+
T Consensus 241 a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v 319 (571)
T 2ad6_A 241 AYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL 319 (571)
T ss_dssp EEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred EEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEE
Confidence 6776 55666666532 36999999999877544321 1112233335774 57
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeeecc----ccc-CCCCCe--------------------------EEEEEcCCCCc
Q 002086 652 LIGSHKGSCRLYSIEDSKLHQLNQVDFQT----KKK-SSTRKI--------------------------TGFQFSPSNPS 700 (969)
Q Consensus 652 asgs~dg~I~IwDl~~~~~~~~~~~~~~~----~~~-~h~~~I--------------------------t~l~fspd~~~ 700 (969)
++++.+|.++++|..+++.+....+.... ... ....++ ..++|+|+. .
T Consensus 320 ~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~-g 398 (571)
T 2ad6_A 320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES-R 398 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT-T
T ss_pred EEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC-C
Confidence 78899999999999999876543321100 000 000011 235677766 3
Q ss_pred eEEEEe-------------------------------------CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCE
Q 002086 701 EVLVTS-------------------------------------ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKY 743 (969)
Q Consensus 701 ~l~sgs-------------------------------------~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~ 743 (969)
++++.. .++.|+.||..+.....+.... ..+....+...+.+
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~ 477 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGL 477 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCE
Confidence 444432 3578999997765544443221 12222233335667
Q ss_pred EEEEeCCCcEEEEEcCCCCc
Q 002086 744 IISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~t~~~ 763 (969)
++.++.||.|+.||.++++.
T Consensus 478 v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 478 VWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp EEEECTTSEEEEEETTTCCE
T ss_pred EEEEcCCCeEEEEECCCCCE
Confidence 88899999999999998543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0089 Score=67.53 Aligned_cols=201 Identities=7% Similarity=-0.005 Sum_probs=129.8
Q ss_pred cCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce
Q 002086 552 GHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL 628 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~ 628 (969)
.....+..++|.+ ++ ++++-...+.|..+++........+. .......+++.+..+.++++-...+.|.+.++....
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH 192 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc
Confidence 3445688999986 44 55555577889999998876555543 234567889987445556666667889999987655
Q ss_pred EEEEec-CCCCEEEEEEccCCCEEEEEe-CC-CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE
Q 002086 629 VVDWTD-LHEMVTAACYTPDGQNALIGS-HK-GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 629 ~~~~~~-~~~~V~sv~fspdg~~Lasgs-~d-g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg 705 (969)
...+.. .......+++.|.+..|+... .. +.|..+++......... .........|+|+|++..++++-
T Consensus 193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--------~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA--------DTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--------CSSCSCEEEEEEEGGGTEEEEEE
T ss_pred eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE--------ECCCCCeeeEEEeCCCCEEEEEE
Confidence 443333 336689999999777666554 34 68888888764332211 12234578999998775666666
Q ss_pred eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 706 SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 706 s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
...+.|..++...................+++ ..+.++++-...+.|..++..++
T Consensus 265 ~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 265 AKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 77788999986532221112222334567777 34555666666778888885553
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.013 Score=65.16 Aligned_cols=199 Identities=7% Similarity=0.005 Sum_probs=127.9
Q ss_pred CCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE
Q 002086 553 HLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV 629 (969)
Q Consensus 553 H~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~ 629 (969)
....+..++|.+ ++ ++++-...+.|..+++.......... .......+++.+..+.++++-...+.|.+.++.....
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 150 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 150 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence 345578999986 44 44455567889999998776554442 2345678999874455566666678999999886654
Q ss_pred EEEe-cCCCCEEEEEEccCCCEEEEEe-CC-CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 630 VDWT-DLHEMVTAACYTPDGQNALIGS-HK-GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 630 ~~~~-~~~~~V~sv~fspdg~~Lasgs-~d-g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
..+. ........++++|.+..|+... .. +.|..+++......... .........|+++|++..++++-.
T Consensus 151 ~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--------~~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA--------DTHLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC--------CSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE--------ECCCCCcceEEEeCCCCEEEEEEC
Confidence 4333 2335689999999666655544 44 78888888764332111 123445789999987756666667
Q ss_pred CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 707 ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 707 ~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..+.|..++...................+++. ++.++++-...+.|..++..+
T Consensus 223 ~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 223 KHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred CCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccC
Confidence 77889999865322211111223345677773 455555655677788887555
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0033 Score=68.31 Aligned_cols=198 Identities=11% Similarity=0.011 Sum_probs=122.7
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC--CeEEEEeCCCceEEE
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD--AKVRIWSISDRLVVD 631 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D--g~I~IWDl~~~~~~~ 631 (969)
.....++|.+ +.++++-..++.|..||... .....+.....+..|++.+ +++++++.... ..|..+|..++++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 5677899988 56666666889999999876 4444555556789999999 78866665433 247778888877654
Q ss_pred EecC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee-ecc-cccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 632 WTDL--HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD-FQT-KKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 632 ~~~~--~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~-~~~-~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
+... ......++..+++..+++-..++.|+++|...+......... ... ...........+ ++++..++++-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 4332 233455666655544444446889999998764321100000 000 001122344555 7777455666677
Q ss_pred CCcEEEEeCCc-c----eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 708 DSRIRILDGLD-I----VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 708 Dg~I~IwD~~~-~----~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.+.|+.|+... . ...+... .....++++++|+++++....+.|.+++..
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 88999999542 1 1122111 234468899999887777778889999864
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.016 Score=63.43 Aligned_cols=200 Identities=10% Similarity=0.015 Sum_probs=126.4
Q ss_pred CCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCC----CcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 002086 553 HLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMET----KSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625 (969)
Q Consensus 553 H~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t----~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~ 625 (969)
....+.+++|.+ ++ ++++-...+.|..+++.. ......+. .......|++.+..++++++-...+.|.++++.
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC
Confidence 455678999987 44 455555678999999886 22222332 224568899987345555665677899999998
Q ss_pred CceEEEEec-CCCCEEEEEEccCCCEEEEEeC-C-CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 626 DRLVVDWTD-LHEMVTAACYTPDGQNALIGSH-K-GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 626 ~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~-d-g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
......+.. .......++++|.+..|+.... . +.|..+++......... .........+++++++..++
T Consensus 108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~--------~~~~~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--------TENIQWPNGITLDLLSGRLY 179 (316)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE--------CSSCSCEEEEEEETTTTEEE
T ss_pred CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE--------ECCCCCceEEEEeccCCEEE
Confidence 765444433 3356889999997666665543 2 68888888654322111 12345678999999875666
Q ss_pred EEEeCCCcEEEEeCCcc-eEEEEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 703 LVTSADSRIRILDGLDI-VHKFRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~-~~~~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++-...+.|..+|.... ...+... ........+++. .+.++++-...+.|..++..++
T Consensus 180 ~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 66667789999996532 2222221 122345677775 3555666666788998887664
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0049 Score=70.93 Aligned_cols=203 Identities=12% Similarity=0.086 Sum_probs=114.5
Q ss_pred CCEEEEEecC-CcEEEEEeCCC----c-EEEEECCCCcE-EEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDK----T-VRLWDMETKSC-LKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~Dg----t-V~IWDl~t~~~-i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~ 627 (969)
....+|++++ ++ |+.+...+ . +...+...+.. ...+........++++|.++.++++-..++.|+.+|..++
T Consensus 182 ~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 182 GQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp SCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred CCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 3467888888 56 44444321 1 33333222111 1222334556778898855566666667788999999877
Q ss_pred eE-EEEec--CCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCC--Cceeeeeeeeec--c-------cccCCCCCeEEE
Q 002086 628 LV-VDWTD--LHEMVTAACYTPDGQNALIG-SHKGSCRLYSIED--SKLHQLNQVDFQ--T-------KKKSSTRKITGF 692 (969)
Q Consensus 628 ~~-~~~~~--~~~~V~sv~fspdg~~Lasg-s~dg~I~IwDl~~--~~~~~~~~~~~~--~-------~~~~h~~~It~l 692 (969)
.+ ..+.. .......++|+|++++|+++ ...+.|+.++... +.+.....+.-. . ...........+
T Consensus 261 ~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gi 340 (433)
T 4hw6_A 261 TLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQG 340 (433)
T ss_dssp CEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEE
T ss_pred eEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccE
Confidence 65 22222 22334579999999965554 4567899988753 322110000000 0 001123446778
Q ss_pred EE---------cCCCCceEEEEeCCCcEEEEeCCcceEEEEeecC----------------CCCeEEEEEe-CCCCEEEE
Q 002086 693 QF---------SPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRN----------------TSSQISAAFN-ADGKYIIS 746 (969)
Q Consensus 693 ~f---------spd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~----------------~~~V~sl~fs-pdg~~LaS 746 (969)
++ .+++ .++++-...+.|+.++.......+.+... ......++++ ++|.++++
T Consensus 341 av~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 419 (433)
T 4hw6_A 341 IFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG 419 (433)
T ss_dssp EEEECGGGTTSSCCE-EEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred EEEccccccccCCCC-cEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence 88 5554 55666567788999985443333332211 1235678898 56666666
Q ss_pred EeCCCcEEEEEcC
Q 002086 747 ASEDSQVYVWKRE 759 (969)
Q Consensus 747 gs~Dg~I~IWdl~ 759 (969)
=.....|+.++++
T Consensus 420 D~~n~rIr~i~~e 432 (433)
T 4hw6_A 420 DCDNHRVRKIAPE 432 (433)
T ss_dssp EGGGTEEEEEEEC
T ss_pred eCCCCEEEEEecC
Confidence 6667778887764
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.012 Score=72.61 Aligned_cols=197 Identities=8% Similarity=0.045 Sum_probs=128.8
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe----ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF----AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~----~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
..|.++...++..|..|+.++-|.+||..++...... .....|.++...+ ++. |..|+.++-|..+|..+++..
T Consensus 363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSSCEEE
T ss_pred cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCCCcEE
Confidence 4688888887667778887777999998765433211 1346789998876 555 455777777999999888766
Q ss_pred EEec---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 631 DWTD---LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 631 ~~~~---~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
.... ....|.++...++|. |.+|+. +.|.+||..+++....... .........|.++...+++ .|.+|+.
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~---~~~~~~~~~i~~i~~d~~g--~lWigt~ 513 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDT---SNSQLLENFVRSIAQDSEG--RFWIGTF 513 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECT---TTSSCSCSCEEEEEECTTC--CEEEEES
T ss_pred EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccC---cccccccceeEEEEEcCCC--CEEEEEc
Confidence 5542 246799999888875 555565 5688999887654332110 0001124678999988876 5666776
Q ss_pred CCcEEEEeCCcceE-EEEee--cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 708 DSRIRILDGLDIVH-KFRGF--RNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 708 Dg~I~IwD~~~~~~-~~~~~--~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++.|..||...... .+... .....|.++...++|.+.++.. +|.|..||..+.
T Consensus 514 ~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 514 GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF 569 (781)
T ss_dssp SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC
T ss_pred CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC
Confidence 55688888654322 22111 1234678898888888665544 665588887763
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0073 Score=69.36 Aligned_cols=203 Identities=13% Similarity=0.137 Sum_probs=113.2
Q ss_pred CCEEEEEecC-CcEEEEEeC-CC----cEEEEECCCCcEE--EEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 555 DDVLDLSWSR-SHLLLSSSM-DK----TVRLWDMETKSCL--KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~-Dg----tV~IWDl~t~~~i--~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
.....|+|++ +++|+.+.. ++ .+.+.+.. +... ..+........++++|.++.++++-..++.|..++..+
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 4467888988 664555543 22 23334432 2211 23333445678889985566666666778999999987
Q ss_pred ceEEEEec--CCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcCCC--ceeeeeeeeec--cc-------ccCCCCCeE-E
Q 002086 627 RLVVDWTD--LHEMVTAACYTPDGQNALI-GSHKGSCRLYSIEDS--KLHQLNQVDFQ--TK-------KKSSTRKIT-G 691 (969)
Q Consensus 627 ~~~~~~~~--~~~~V~sv~fspdg~~Las-gs~dg~I~IwDl~~~--~~~~~~~~~~~--~~-------~~~h~~~It-~ 691 (969)
+....+.. .......++|+|+|++|++ -...+.|..++.... .+.....+.-. .. ......... .
T Consensus 258 ~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~g 337 (430)
T 3tc9_A 258 QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQG 337 (430)
T ss_dssp TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEE
T ss_pred CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcce
Confidence 76533322 2245789999999995555 456788999887642 22111100000 00 000112233 4
Q ss_pred EEEcC--------CCCceEEEEeCCCcEEEEeCCcceEEEEeec-----C-----------CCCeEEEEEeCC-CCEEEE
Q 002086 692 FQFSP--------SNPSEVLVTSADSRIRILDGLDIVHKFRGFR-----N-----------TSSQISAAFNAD-GKYIIS 746 (969)
Q Consensus 692 l~fsp--------d~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~-----~-----------~~~V~sl~fspd-g~~LaS 746 (969)
++..+ ++ .++++-...+.|+.++.......+.+.. . ......++++++ +.++++
T Consensus 338 v~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 416 (430)
T 3tc9_A 338 TFVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG 416 (430)
T ss_dssp EEEECGGGTTSSCCE-EEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred EEEccccccccCCCC-eEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE
Confidence 55532 23 4444445677888888543333333220 0 124678999994 555555
Q ss_pred EeCCCcEEEEEcC
Q 002086 747 ASEDSQVYVWKRE 759 (969)
Q Consensus 747 gs~Dg~I~IWdl~ 759 (969)
-.....|+.++++
T Consensus 417 D~~n~rIr~i~~e 429 (430)
T 3tc9_A 417 DRENRRIRKIGYE 429 (430)
T ss_dssp EGGGTEEEEEEEC
T ss_pred ECCCCeEEEEccC
Confidence 5556778887764
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.028 Score=69.46 Aligned_cols=200 Identities=9% Similarity=0.091 Sum_probs=125.3
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee--------cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA--------HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~--------h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
..|.++...+...|..|+.+ -|.+||..+++...... ....|.++...+ + ..|..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~-g~lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-D-NKLWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECT-T-SEEEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-C-CCEEEEeCCCCeEEECCCC
Confidence 46788888775556666666 69999988776543321 245699998876 4 4566666656689999887
Q ss_pred ceEEEEec---------------CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee-cccccCCCCCeE
Q 002086 627 RLVVDWTD---------------LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF-QTKKKSSTRKIT 690 (969)
Q Consensus 627 ~~~~~~~~---------------~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~-~~~~~~h~~~It 690 (969)
+....... ....|.++....+|. |.+|+.++-|..|+.............. ..........|.
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 76443221 235689999998875 6677878889999887665432211000 001122345689
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-E--eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-R--GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-~--~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++...+++ .|.+|+.++.|.+|+........ . .......|.++...++|.+.+ |+.++.|.+++..++
T Consensus 367 ~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~ 437 (781)
T 3v9f_A 367 SVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK 437 (781)
T ss_dssp EEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC
T ss_pred EEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC
Confidence 99888766 57778877889999965432111 0 011235688888888887555 666677888887653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.67 E-value=0.051 Score=61.61 Aligned_cols=209 Identities=11% Similarity=0.033 Sum_probs=132.7
Q ss_pred CCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCC----cEEEEee-cCCCeEEEEEecCCCCEEEEEECC
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETK----SCLKLFA-HNDYVTCIQFNPMDDDYFISGSLD 616 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~----~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~D 616 (969)
......+......+.+|+|.+ ++.| ++-...+.|+.+++... .....+. .......|++.+..++++++-...
T Consensus 101 ~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~ 180 (400)
T 3p5b_L 101 RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 180 (400)
T ss_dssp SCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCC
Confidence 333334444567789999997 4544 44456788999998762 2333333 445678999987455666666677
Q ss_pred CeEEEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE
Q 002086 617 AKVRIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSH--KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~--dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
+.|.+.++.......+.. .......|++.|.+.+|+.... .+.|...++......... .........|+
T Consensus 181 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~--------~~~l~~P~gla 252 (400)
T 3p5b_L 181 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--------TENIQWPNGIT 252 (400)
T ss_dssp TEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE--------CSSCSCEEEEE
T ss_pred CeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE--------ECCCCceEEEE
Confidence 899999998765554443 3356899999997766666542 478999988765432211 12335678999
Q ss_pred EcCCCCceEEEEeCCCcEEEEeCCcce-EEE-EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 694 FSPSNPSEVLVTSADSRIRILDGLDIV-HKF-RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg~I~IwD~~~~~-~~~-~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+++++..++++-...+.|..+|..... ..+ ...........+++. .+.++++-...+.|..++..++
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 253 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred EEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 998875555665677889999864322 222 221223344567763 3445566666788988886664
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00062 Score=82.73 Aligned_cols=202 Identities=12% Similarity=0.095 Sum_probs=111.4
Q ss_pred EEEecC-CcEEEEEe-CCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEE-CC-----CeEEEEeCCCce
Q 002086 559 DLSWSR-SHLLLSSS-MDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGS-LD-----AKVRIWSISDRL 628 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs-~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs-~D-----g~I~IWDl~~~~ 628 (969)
++++.. +.+++.|+ .+..+.+||..+.+....- .....-.++++.+ ++.+++.|+ .+ ..+.+||..++.
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 455554 77888887 4568999999887655432 1222223455555 788888888 44 569999998876
Q ss_pred EEEEec-----CCCCEEEEEEccCCCEEEEEeCCC---------cEEEEEcCCCceeeeeeeeecc-cccCCCCCeEEEE
Q 002086 629 VVDWTD-----LHEMVTAACYTPDGQNALIGSHKG---------SCRLYSIEDSKLHQLNQVDFQT-KKKSSTRKITGFQ 693 (969)
Q Consensus 629 ~~~~~~-----~~~~V~sv~fspdg~~Lasgs~dg---------~I~IwDl~~~~~~~~~~~~~~~-~~~~h~~~It~l~ 693 (969)
-..... ....-....+..++..++.|+.+| .+..||..+............. ........-.++.
T Consensus 326 W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 326 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 444311 000000112234555566665544 4678888776543211110000 0000111234455
Q ss_pred EcCCCCceEEEEeCCC-----------cEEEEeCCcceEEEE---eecCCCCeEEEEEeCCCCEEEEEeCC---------
Q 002086 694 FSPSNPSEVLVTSADS-----------RIRILDGLDIVHKFR---GFRNTSSQISAAFNADGKYIISASED--------- 750 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg-----------~I~IwD~~~~~~~~~---~~~~~~~V~sl~fspdg~~LaSgs~D--------- 750 (969)
|...+..++++|+.++ .|.+||.....-... .......-.+++..|+|++++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 5444447778877542 577888654322221 11111222355677899999999865
Q ss_pred --CcEEEEEcCCC
Q 002086 751 --SQVYVWKREEH 761 (969)
Q Consensus 751 --g~I~IWdl~t~ 761 (969)
..+.+||..+.
T Consensus 486 ~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 486 PVFTPEIYVPEQD 498 (656)
T ss_dssp BCCCCEEEEGGGT
T ss_pred cccceEEEcCCCC
Confidence 46889998763
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0034 Score=75.20 Aligned_cols=101 Identities=10% Similarity=0.005 Sum_probs=69.0
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCe---------------------------------------EEEEEecCCCCEEEEE
Q 002086 573 MDKTVRLWDMETKSCLKLFAHNDYV---------------------------------------TCIQFNPMDDDYFISG 613 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~~~V---------------------------------------~sv~fsp~~~~~L~sg 613 (969)
.++.|+.+|..+|+.+-.+...... ..+++.+ ...+++.+
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g 258 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG 258 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence 3899999999999998776332211 1346666 66777777
Q ss_pred ECC----------------CeEEEEeCCCceEEEEecCC-C---------CEEEEEEc-cCC---CEEEEEeCCCcEEEE
Q 002086 614 SLD----------------AKVRIWSISDRLVVDWTDLH-E---------MVTAACYT-PDG---QNALIGSHKGSCRLY 663 (969)
Q Consensus 614 s~D----------------g~I~IWDl~~~~~~~~~~~~-~---------~V~sv~fs-pdg---~~Lasgs~dg~I~Iw 663 (969)
..+ +.|..+|..+++++-.+... . ...-+... .+| ..++.++.+|.++++
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEE
Confidence 655 37999999999887543321 1 11112232 567 467778999999999
Q ss_pred EcCCCceeeee
Q 002086 664 SIEDSKLHQLN 674 (969)
Q Consensus 664 Dl~~~~~~~~~ 674 (969)
|..+++.+...
T Consensus 339 D~~tG~~lw~~ 349 (599)
T 1w6s_A 339 DRTDGALVSAN 349 (599)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCCEeecc
Confidence 99999876543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0026 Score=78.61 Aligned_cols=147 Identities=12% Similarity=0.072 Sum_probs=82.7
Q ss_pred EEEecC-CcEEEEEeCC-----CcEEEEECCCCcE--EEEe--ecCCCeEEEEEecCCCCEEEEEEC---CCeEEEEeCC
Q 002086 559 DLSWSR-SHLLLSSSMD-----KTVRLWDMETKSC--LKLF--AHNDYVTCIQFNPMDDDYFISGSL---DAKVRIWSIS 625 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs~D-----gtV~IWDl~t~~~--i~~~--~h~~~V~sv~fsp~~~~~L~sgs~---Dg~I~IWDl~ 625 (969)
.+.|+| ++.|+....| ..|+++++.+++. ..++ ........+.|+| ++.+|+..+. ...|+++|+.
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECC
Confidence 467888 5666666654 3688899987642 2333 3334567889999 8888776553 3468889998
Q ss_pred Cc--eE--EEEecC-CCCEEEEEEccCCCEEEEEe-CC--C--cEEEEEcCCC-ceee-eeeeeecccccCCCCCeEEEE
Q 002086 626 DR--LV--VDWTDL-HEMVTAACYTPDGQNALIGS-HK--G--SCRLYSIEDS-KLHQ-LNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 626 ~~--~~--~~~~~~-~~~V~sv~fspdg~~Lasgs-~d--g--~I~IwDl~~~-~~~~-~~~~~~~~~~~~h~~~It~l~ 693 (969)
++ .. ..+... ......+.|+. |..|+..+ .+ + .|..+++.+. .... . + . ......+..+.
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l--i--~---~~~~~~l~~~~ 375 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL--V--D---HSEDVFMESIA 375 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE--E--C---CCSSEEEEEEE
T ss_pred CCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE--E--C---CCCCcEEEEEE
Confidence 75 33 333332 24445555544 55555444 33 2 5666676542 2111 1 0 0 11111345555
Q ss_pred EcCCCCceEEEEeCCCc--EEEEeC
Q 002086 694 FSPSNPSEVLVTSADSR--IRILDG 716 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg~--I~IwD~ 716 (969)
+. +..++++...++. |++++.
T Consensus 376 ~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 376 VR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EE--CCEEEEEEEeCCEEEEEEEec
Confidence 54 4356677777776 455564
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.015 Score=63.53 Aligned_cols=179 Identities=8% Similarity=-0.054 Sum_probs=114.9
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC----ceEEEEec-CCCCEEEEEEccCC
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD----RLVVDWTD-LHEMVTAACYTPDG 648 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~----~~~~~~~~-~~~~V~sv~fspdg 648 (969)
...|+..|+.+.+....+.....+.+++|++.++.++++-...+.|..+++.+ ........ ....+..+++.+.+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 35689999998877776666677899999983344555555678999999876 22222222 22456789998755
Q ss_pred CEEE-EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-CcEEEEeCCcceEEEEee
Q 002086 649 QNAL-IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-SRIRILDGLDIVHKFRGF 726 (969)
Q Consensus 649 ~~La-sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-g~I~IwD~~~~~~~~~~~ 726 (969)
..|+ +-...+.|.++++......... .........+++.|.+..++++.... +.|..++...........
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~--------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLF--------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEE--------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEE--------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 5554 5556789999998765432211 12234678999999774455554443 688888854332222222
Q ss_pred cCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 727 RNTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
........+++++++..|+.+. ..+.|..++++.
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 2334567899999877666554 567899999874
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.018 Score=66.97 Aligned_cols=207 Identities=8% Similarity=0.074 Sum_probs=119.1
Q ss_pred CEEEEEe-------cC-CcEEEEEeCCC-------cEEEEECCC-CcEE-----EEeecCCCeEEEEEecCCCCEEEEEE
Q 002086 556 DVLDLSW-------SR-SHLLLSSSMDK-------TVRLWDMET-KSCL-----KLFAHNDYVTCIQFNPMDDDYFISGS 614 (969)
Q Consensus 556 ~I~~l~f-------s~-~~~L~Sgs~Dg-------tV~IWDl~t-~~~i-----~~~~h~~~V~sv~fsp~~~~~L~sgs 614 (969)
....|+| ++ ++.|+.+...+ .|.+.+... +... ..+.--.....++++|.++.++++-.
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~ 266 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSY 266 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEET
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEEC
Confidence 4677888 77 56555555443 266666443 1221 22222234457788985566677777
Q ss_pred CCCeEEEEeCC-------CceE--------------EEEecCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCC--Cce
Q 002086 615 LDAKVRIWSIS-------DRLV--------------VDWTDLHEMVTAACYTPDGQNALIG-SHKGSCRLYSIED--SKL 670 (969)
Q Consensus 615 ~Dg~I~IWDl~-------~~~~--------------~~~~~~~~~V~sv~fspdg~~Lasg-s~dg~I~IwDl~~--~~~ 670 (969)
.++.|..+|+. ++.+ +...........|+|+|+|++|.++ +....|+.++... +.+
T Consensus 267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~ 346 (496)
T 3kya_A 267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEF 346 (496)
T ss_dssp TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCccee
Confidence 88899999997 4443 1122233456899999999965554 4677888866543 222
Q ss_pred eeeeeeeec--cc-------ccCCCCCeE-EEEEc-------CCCCceEEEEeCCCcEEEEeCCcceEEEEeecC-----
Q 002086 671 HQLNQVDFQ--TK-------KKSSTRKIT-GFQFS-------PSNPSEVLVTSADSRIRILDGLDIVHKFRGFRN----- 728 (969)
Q Consensus 671 ~~~~~~~~~--~~-------~~~h~~~It-~l~fs-------pd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~----- 728 (969)
.....+.-. .. ......... .++.. +.+ .++++-...++|+.++....+..+.+...
T Consensus 347 ~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~ 425 (496)
T 3kya_A 347 ITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLA 425 (496)
T ss_dssp CCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHH
T ss_pred cccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCCCEEEEeccccccccc
Confidence 100000000 00 011122344 45554 333 55666677889999985544444443211
Q ss_pred -----------------CCCeEEEEEeCC-CCEEEEEeCCCcEEEEEcCCCCc
Q 002086 729 -----------------TSSQISAAFNAD-GKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 729 -----------------~~~V~sl~fspd-g~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
......|+++++ |.++++=.....|+.++++....
T Consensus 426 ~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 426 DGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp HSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred CccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 123568899997 76666666678899999887443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.031 Score=62.09 Aligned_cols=195 Identities=9% Similarity=-0.026 Sum_probs=125.8
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-
Q 002086 557 VLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL- 635 (969)
Q Consensus 557 I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~- 635 (969)
..|....+..+|+.+. ...|+..++..............+..++|++.++.++++-...+.|..+++.......+...
T Consensus 36 ~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 36 RSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp SCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred CcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence 3455555544554443 45688889887777666655567899999983444555555678899999987765444332
Q ss_pred CCCEEEEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-CcEEE
Q 002086 636 HEMVTAACYTPDGQNA-LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-SRIRI 713 (969)
Q Consensus 636 ~~~V~sv~fspdg~~L-asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-g~I~I 713 (969)
......+++.+.+..| ++-...+.|.++++......... .........+++.|.+..++++-... +.|..
T Consensus 115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~--------~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--------CTTCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE--------eCCCCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 2456789999865555 45556789999998765422111 22335578999999775556665555 78888
Q ss_pred EeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 714 LDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 714 wD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
++...................++|+|++..|..+. ..+.|..++++.
T Consensus 187 ~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 187 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 88553322222122334467899998766665554 467799999874
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.016 Score=69.15 Aligned_cols=191 Identities=7% Similarity=-0.078 Sum_probs=114.6
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCC-----CeEE-EEEecCCCCEEEEEEC------CCeEEEEeCCCceEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHND-----YVTC-IQFNPMDDDYFISGSL------DAKVRIWSISDRLVVDW 632 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~-----~V~s-v~fsp~~~~~L~sgs~------Dg~I~IWDl~~~~~~~~ 632 (969)
+..++.++.|+.|..+|..+|+.+-.+.... .+.+ ..+ .+..+++++. ++.|..+|..+++++-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 4678888899999999999999887663222 2221 112 1345666554 79999999999987754
Q ss_pred ecCCCCE---------------------------------------EEEEEccCCCEEEEEeCC----------------
Q 002086 633 TDLHEMV---------------------------------------TAACYTPDGQNALIGSHK---------------- 657 (969)
Q Consensus 633 ~~~~~~V---------------------------------------~sv~fspdg~~Lasgs~d---------------- 657 (969)
....... ..+++.++...++.++.+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 3322111 235677777777776642
Q ss_pred CcEEEEEcCCCceeeeeeeeeccc--ccCCCCCeEEEEEcCCCC--ceEEEEeCCCcEEEEeCCcceEEEEeecCC----
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQTK--KKSSTRKITGFQFSPSNP--SEVLVTSADSRIRILDGLDIVHKFRGFRNT---- 729 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~~~--~~~h~~~It~l~fspd~~--~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~---- 729 (969)
+.|..+|..+++..-..+...... ......++. +....++. ..++.++.+|.++++|..+...........
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 359999999998764433210000 001122222 22223442 256778889999999966544333221110
Q ss_pred ---------CCe--------------------------EEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 730 ---------SSQ--------------------------ISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 730 ---------~~V--------------------------~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.++ ..++|+|+..+|+....+....++...
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~ 415 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFM 415 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccc
Confidence 011 236789988899888877666665543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.46 E-value=0.041 Score=60.32 Aligned_cols=197 Identities=5% Similarity=-0.006 Sum_probs=127.4
Q ss_pred CCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEE-EEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 555 DDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCL-KLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 555 ~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i-~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
..+.++.|.+ +.++.+-...+.|..+++..+... ..+ ..-.....+++.+..+.++++-...+.|.++++......
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 4567889987 455555567788999998876421 122 233456789998745556666666789999999865444
Q ss_pred EEe-cCCCCEEEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 631 DWT-DLHEMVTAACYTPDGQNALIGS--HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 631 ~~~-~~~~~V~sv~fspdg~~Lasgs--~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
.+. ........+++.|.+..|+... ..+.|..+++......... .........|++++++..++++-+.
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~--------~~~l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII--------NSEIYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE--------CSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE--------ECCCCCccEEEEeccCCEEEEEECC
Confidence 333 3446689999999766666655 3578888888754322111 1223456899999977566666677
Q ss_pred CCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 708 DSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 708 Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+.|..+|.... ...+. .........+++.. +.++++-...+.|..++..++
T Consensus 187 ~~~I~~~d~dG~~~~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 187 LNFIHKSNLDGTNRQAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp TTEEEEEETTSCSCEEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEcCCCCceEEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 888999986532 22222 12233456777753 345556556788999988764
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0091 Score=71.37 Aligned_cols=145 Identities=10% Similarity=0.085 Sum_probs=84.2
Q ss_pred CeEEEEeCCCceEEEEecC--CC--------CEEEEEEc-cCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeeecc--
Q 002086 617 AKVRIWSISDRLVVDWTDL--HE--------MVTAACYT-PDGQ---NALIGSHKGSCRLYSIEDSKLHQLNQVDFQT-- 680 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~~--~~--------~V~sv~fs-pdg~---~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~-- 680 (969)
+.|..+|..+++++-.+.. +. ...-+... .+|+ .++.++.+|.++++|..+++.+....+....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 6899999999988754432 11 11112222 4674 6788999999999999999876543321100
Q ss_pred --c-------------cc---------CCCC-----------CeEEEEEcCCCCceEEEEe-------------------
Q 002086 681 --K-------------KK---------SSTR-----------KITGFQFSPSNPSEVLVTS------------------- 706 (969)
Q Consensus 681 --~-------------~~---------~h~~-----------~It~l~fspd~~~~l~sgs------------------- 706 (969)
. .. .... .-..++++|+.. ++++..
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTSC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCCc
Confidence 0 00 0000 011345666553 333322
Q ss_pred --------------CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 707 --------------ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 707 --------------~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
.++.|+.||..+.....+.... ..+..-.....+.+++.++.||.|+.||.++++.
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 2578889997765554443222 1222112223567888899999999999998543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.088 Score=55.78 Aligned_cols=206 Identities=10% Similarity=0.145 Sum_probs=124.3
Q ss_pred eEecccccCEEEEEEeCCCC-EEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 445 QEIQAHEGSIWTIKFSLDAR-FLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~-~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
+.|.+-.+.+..|+|+|++. +++....++.|...|.. ++.+..+.
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~--------------------------------- 65 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP--------------------------------- 65 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE---------------------------------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe---------------------------------
Confidence 35667778899999999766 44556778888888887 66655321
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcE---EEEe-------e
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSC---LKLF-------A 592 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~---i~~~-------~ 592 (969)
+.+ ....-.|++.+ +.++++.-.++.+.++++..... +... .
T Consensus 66 --------------------------l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~ 118 (255)
T 3qqz_A 66 --------------------------LDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESP 118 (255)
T ss_dssp --------------------------CSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCC
T ss_pred --------------------------cCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccccccc
Confidence 011 13456677777 44445555677888888765442 1222 2
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC----c--eEEEE-----ecCCCCEEEEEEccCCCE-EEEEeCCCcE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD----R--LVVDW-----TDLHEMVTAACYTPDGQN-ALIGSHKGSC 660 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~----~--~~~~~-----~~~~~~V~sv~fspdg~~-Lasgs~dg~I 660 (969)
.+.....|+|+| .++.|+++.......||.+.. . .+... ......+..++++|.... ++.......+
T Consensus 119 ~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L 197 (255)
T 3qqz_A 119 TNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRAL 197 (255)
T ss_dssp CSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeE
Confidence 345579999999 666666665554444554431 1 12111 011235789999997554 4556667788
Q ss_pred EEEEcCCCceeeeeeeeec-ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 661 RLYSIEDSKLHQLNQVDFQ-TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 661 ~IwDl~~~~~~~~~~~~~~-~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.++|.... ......+... .........--.|+|.++| . |++.+.-..++.+.
T Consensus 198 ~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 198 QEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASG-N-IYIVSEPNRFYRFT 250 (255)
T ss_dssp EEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTC-C-EEEEETTTEEEEEE
T ss_pred EEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCC-C-EEEEcCCceEEEEE
Confidence 89997654 4433332210 0011223467899999988 4 55557777777665
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.027 Score=63.52 Aligned_cols=193 Identities=9% Similarity=-0.017 Sum_probs=123.9
Q ss_pred EEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-CC
Q 002086 559 DLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-HE 637 (969)
Q Consensus 559 ~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-~~ 637 (969)
|.+..+..+|+.+. ...|+..++..............+..++|++.++.++++-...+.|..+++.......+... ..
T Consensus 81 C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 159 (386)
T 3v65_B 81 CKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 159 (386)
T ss_dssp EEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS
T ss_pred ECCccccceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC
Confidence 44444444444443 46788899988776666665667899999984445555556678899999987765544332 23
Q ss_pred CEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-CcEEEEe
Q 002086 638 MVTAACYTPDGQNAL-IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-SRIRILD 715 (969)
Q Consensus 638 ~V~sv~fspdg~~La-sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-g~I~IwD 715 (969)
....+++.+.+..|+ +-...+.|.++++......... .........+++.|.+..++++-... +.|+.++
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~--------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL--------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE--------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee--------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 457788987655554 4555778888888754322111 22335678999999775555555555 7888888
Q ss_pred CCcceEEEEeecCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCC
Q 002086 716 GLDIVHKFRGFRNTSSQISAAFNADGKYIISA-SEDSQVYVWKREE 760 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSg-s~Dg~I~IWdl~t 760 (969)
...................++|+|++..|..+ ...+.|..++++.
T Consensus 232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 65433222222233446789999876666555 4467799998864
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.14 Score=63.31 Aligned_cols=206 Identities=11% Similarity=0.029 Sum_probs=128.4
Q ss_pred eeEeccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEECCCC----cEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeE
Q 002086 547 FCSFIGHLDDVLDLSWSR-S-HLLLSSSMDKTVRLWDMETK----SCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKV 619 (969)
Q Consensus 547 ~~~l~gH~~~I~~l~fs~-~-~~L~Sgs~DgtV~IWDl~t~----~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I 619 (969)
+..+......+.+|+|.+ + .++++-...+.|+.+++... ....++. .......|++.+..++++++-...+.|
T Consensus 416 ~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 416 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeE
Confidence 334444566788999987 4 45555566788999998753 2233333 445678899988444566666677899
Q ss_pred EEEeCCCceEEEEec-CCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 620 RIWSISDRLVVDWTD-LHEMVTAACYTPDGQNALIGSH--KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 620 ~IWDl~~~~~~~~~~-~~~~V~sv~fspdg~~Lasgs~--dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
.+.++.......+.. .......|++.|.+.+|+.... .+.|.+.++......... .........|++.+
T Consensus 496 ~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv--------~~~l~~P~GLavD~ 567 (791)
T 3m0c_C 496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--------TENIQWPNGITLDL 567 (791)
T ss_dssp EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE--------CSSCSCEEEEEEET
T ss_pred EEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE--------eCCCCCceEEEEec
Confidence 999998766554443 3356899999998666666543 368999988765443221 22345688999998
Q ss_pred CCCceEEEEeCCCcEEEEeCCcce--EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIV--HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~--~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+..++++-.....|..++..... ..............|++.. +.++++-...+.|...+..++
T Consensus 568 ~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 568 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 775555555667789998864322 2222212223345666643 234444445677888876664
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.27 E-value=0.046 Score=61.99 Aligned_cols=186 Identities=8% Similarity=-0.047 Sum_probs=119.9
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEec-CCCCEE
Q 002086 566 HLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTD-LHEMVT 640 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~-~~~~V~ 640 (969)
.+|+.+. ...|+..++..............+..|+|++.++.++++-...+.|+.+++... ....... ......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 3444443 467899999888777777777789999999844445555556788999998762 2233333 345678
Q ss_pred EEEEccCCCEE-EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC-CCcEEEEeCCc
Q 002086 641 AACYTPDGQNA-LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA-DSRIRILDGLD 718 (969)
Q Consensus 641 sv~fspdg~~L-asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~-Dg~I~IwD~~~ 718 (969)
.+++.+.+..| ++-...+.|.+.++......... .........|++.|.++.++++-.. .+.|...+...
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~--------~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE--------ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE--------eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 99999854444 45556789999998766433221 1234457899999976444444433 47888888654
Q ss_pred ceEEEEeecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 719 IVHKFRGFRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 719 ~~~~~~~~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
................|++++++..|+.+. ..+.|..+|++.
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 332222222334568899998777776664 457899999875
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.011 Score=72.78 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=110.0
Q ss_pred CEEEEEec-C-CcEEEEEe-CCC----cEEEEECCCC-cEEEE-eecCCCeEEEEEecCCCCEEEEEECC-----CeEEE
Q 002086 556 DVLDLSWS-R-SHLLLSSS-MDK----TVRLWDMETK-SCLKL-FAHNDYVTCIQFNPMDDDYFISGSLD-----AKVRI 621 (969)
Q Consensus 556 ~I~~l~fs-~-~~~L~Sgs-~Dg----tV~IWDl~t~-~~i~~-~~h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~I 621 (969)
.+....|+ | +++|+.+. .+| +|+++|+.++ +.+.. +. .....+.|+| +++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGP-DHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECS-STTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEec-CCCEEEEEEECCCCCCCEEEE
Confidence 67889999 8 66666543 333 5999999998 63211 11 1135678999 88777766655 36888
Q ss_pred EeCCCce---EEEEe-cCCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcCCCceee-eeeeeecccccCCCCCeEEEE
Q 002086 622 WSISDRL---VVDWT-DLHEMVTAACYTPDGQNALIGSH---KGSCRLYSIEDSKLHQ-LNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 622 WDl~~~~---~~~~~-~~~~~V~sv~fspdg~~Lasgs~---dg~I~IwDl~~~~~~~-~~~~~~~~~~~~h~~~It~l~ 693 (969)
+++.++. .+.+. ........+.|+|||++|+.... ...|+++|+.++.... ... + ..........+.
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~--l---~~~~~~~~~s~~ 326 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI--V---RPREKGVRYDVQ 326 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE--S---SCCCTTCCEEEE
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE--e---ecCCCCceEEEe
Confidence 8987753 22222 22345678899999999887653 3468888887652110 000 0 022234455555
Q ss_pred EcCCCCceEEEEeCC----CcEEEEeCCc--ceEE-EEeecCCCCeEEEEEeCCCCEEEEEeCCCc--EEEEEc
Q 002086 694 FSPSNPSEVLVTSAD----SRIRILDGLD--IVHK-FRGFRNTSSQISAAFNADGKYIISASEDSQ--VYVWKR 758 (969)
Q Consensus 694 fspd~~~~l~sgs~D----g~I~IwD~~~--~~~~-~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~--I~IWdl 758 (969)
|+. +..+++.+..+ ..|..++... .... +..+.....+..+.+. .+.++++...++. |+++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 544 43555555544 3577777643 1122 2222222234455554 3345566777776 455554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.35 Score=52.85 Aligned_cols=187 Identities=7% Similarity=0.083 Sum_probs=101.1
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee----cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA----HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~----h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
..+.+|.|.++..++ ++.++.|.. ....++...... +...+..|.+.+ ++..++ ++.+|.|.. ....++.-
T Consensus 80 ~~~~~i~~~~~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~-~~~~g~v~~-S~DgG~tW 154 (327)
T 2xbg_A 80 YRFNSVSFQGNEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEM-ITNVGAIYR-TKDSGKNW 154 (327)
T ss_dssp CEEEEEEEETTEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEE-EETTCCEEE-ESSTTSSE
T ss_pred ccEEEEEecCCeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEE-EeCCccEEE-EcCCCCCC
Confidence 356778887644444 455665443 333344333321 335578888876 454444 445665432 22223211
Q ss_pred --EEecCCCCEEEEEEccCCCEEEEEeCCCcEEE-EEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 631 --DWTDLHEMVTAACYTPDGQNALIGSHKGSCRL-YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 631 --~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~I-wDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
........+..+.+.+++.+++++. .|.+.. .|- .+..-.... ......+..+.+.+++ .+++++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~-gG~tW~~~~-------~~~~~~~~~~~~~~~g--~~~~~~~ 223 (327)
T 2xbg_A 155 QALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP-GQTAWEPHN-------RTTSRRLHNMGFTPDG--RLWMIVN 223 (327)
T ss_dssp EEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECT-TCSSCEEEE-------CCSSSCEEEEEECTTS--CEEEEET
T ss_pred EEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC-CCCceeECC-------CCCCCccceeEECCCC--CEEEEeC
Confidence 1223345688999999988777665 454443 332 122111110 2234578889998876 4556667
Q ss_pred CCcEEEEeCCcceEEEEeec-----CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 708 DSRIRILDGLDIVHKFRGFR-----NTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 708 Dg~I~IwD~~~~~~~~~~~~-----~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+|.+++.+.. .-..+.... ....+..+.+.+++.+++++. +|.| ++..+.
T Consensus 224 ~G~~~~s~~D-~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~Dg 278 (327)
T 2xbg_A 224 GGKIAFSDPD-NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDG 278 (327)
T ss_dssp TTEEEEEETT-EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESST
T ss_pred CceEEEecCC-CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCC
Confidence 8888877411 111121111 223478899998887776655 6766 444554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.06 Score=58.97 Aligned_cols=199 Identities=9% Similarity=0.115 Sum_probs=124.4
Q ss_pred CEEEEEecC-CcEEEEEe-CCCcEEEEECCCCcEEEE-eec-----C--CCeEEEEE---ecCCCCEEEEEE--------
Q 002086 556 DVLDLSWSR-SHLLLSSS-MDKTVRLWDMETKSCLKL-FAH-----N--DYVTCIQF---NPMDDDYFISGS-------- 614 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~t~~~i~~-~~h-----~--~~V~sv~f---sp~~~~~L~sgs-------- 614 (969)
--.++.|.+ ...|+.++ ..++|..||...+....+ +.. . ..+..|.| .| ++.++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 344788987 55666665 799999999986655444 222 1 14689999 57 666666543
Q ss_pred -----CCCeEEEEeCC---CceEEEEecC--------------CCCEEEEEEccCCCEEEEEeCC-CcEEEEEcCCCcee
Q 002086 615 -----LDAKVRIWSIS---DRLVVDWTDL--------------HEMVTAACYTPDGQNALIGSHK-GSCRLYSIEDSKLH 671 (969)
Q Consensus 615 -----~Dg~I~IWDl~---~~~~~~~~~~--------------~~~V~sv~fspdg~~Lasgs~d-g~I~IwDl~~~~~~ 671 (969)
.+..|..||+. +++.+..... ......++..++|+..++++.. +.|..++.......
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 26779999999 6665543332 1247899999999999999888 88888877655332
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE-EEEee--c---CCCCeEEE-EEeCCCCE-
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH-KFRGF--R---NTSSQISA-AFNADGKY- 743 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~-~~~~~--~---~~~~V~sl-~fspdg~~- 743 (969)
.. . ............+.|+++|++ ..|++....+.|..+|+..... .+... . .......+ ..-.+|+.
T Consensus 173 ~~-~--~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 173 TF-A--WESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp EE-E--ECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred ee-e--ecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 11 1 111112234557899999998 5666665599999999775433 12111 1 11122332 33347777
Q ss_pred EEEEeCCCcEEEEEcC
Q 002086 744 IISASEDSQVYVWKRE 759 (969)
Q Consensus 744 LaSgs~Dg~I~IWdl~ 759 (969)
|++.+..+.+.+.+-+
T Consensus 249 lV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 249 LVGARAPYAISFRSWD 264 (334)
T ss_dssp EEEEETTEEEEEECSS
T ss_pred EEEcCCCCEEEEECCC
Confidence 5555556555555443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0079 Score=73.19 Aligned_cols=194 Identities=14% Similarity=0.098 Sum_probs=123.3
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCC-----------e-EEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY-----------V-TCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~-----------V-~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
+..|+.++.++.|..+|..+|+.+-.+..... + ..+++ .+..+++++.|+.|..+|..+++++-.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 67888888899999999999999887732211 1 12333 356788888999999999999987754
Q ss_pred ecCC-----CCEEE-EEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeeccccc-----------------
Q 002086 633 TDLH-----EMVTA-ACYTPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQTKKK----------------- 683 (969)
Q Consensus 633 ~~~~-----~~V~s-v~fspdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~~~~----------------- 683 (969)
.... ..+.. ..+ .+..++++.. +|.|+.||..+++..-...........
T Consensus 143 ~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 4331 11111 111 1345666543 589999999999876544321000000
Q ss_pred ------CCCCCeEEEEEcCCCCceEEEEeCCC-------------------cEEEEeCCcceEEEEeec--CC-------
Q 002086 684 ------SSTRKITGFQFSPSNPSEVLVTSADS-------------------RIRILDGLDIVHKFRGFR--NT------- 729 (969)
Q Consensus 684 ------~h~~~It~l~fspd~~~~l~sgs~Dg-------------------~I~IwD~~~~~~~~~~~~--~~------- 729 (969)
........+++.|.. ..+++++.++ .|..+|..+......... +.
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 011122346788876 5777777665 388999776655554332 11
Q ss_pred CCeEEEEEeCCCC---EEEEEeCCCcEEEEEcCCCCcc
Q 002086 730 SSQISAAFNADGK---YIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 730 ~~V~sl~fspdg~---~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
.......+..+|+ +|+.++.+|.|+++|..+++.+
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 2233333445775 7899999999999999996544
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.019 Score=65.83 Aligned_cols=157 Identities=11% Similarity=0.150 Sum_probs=100.2
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeC-CC----cEEEEEcCCCce
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH-KG----SCRLYSIEDSKL 670 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~-dg----~I~IwDl~~~~~ 670 (969)
....|+++|.++..|+++...+.|+.+|+.++.+..+.........++|+++|++|+++.. ++ .+.+++.. +..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence 5578899872134455554448899999998887777666677899999999996666654 22 23334432 222
Q ss_pred eeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE-EEEeecCCCCeEEEEEeCCCCEEE-EEe
Q 002086 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH-KFRGFRNTSSQISAAFNADGKYII-SAS 748 (969)
Q Consensus 671 ~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~-~~~~~~~~~~V~sl~fspdg~~La-Sgs 748 (969)
.....+ . .......++++|++..++++-..++.|+.++...... .+...........++|+|+|++|+ +-.
T Consensus 217 ~~~~~l--~-----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 217 KVITEL--T-----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp CSEEEE--E-----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred eeeeee--c-----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 111111 0 1234567889995436666666788999999764433 222222223467899999999554 445
Q ss_pred CCCcEEEEEcCC
Q 002086 749 EDSQVYVWKREE 760 (969)
Q Consensus 749 ~Dg~I~IWdl~t 760 (969)
..+.|+.++.+.
T Consensus 290 ~~~~I~~~~~d~ 301 (430)
T 3tc9_A 290 NQHYILRSDYDW 301 (430)
T ss_dssp TTTEEEEEEEET
T ss_pred CCCEEEEEeCCc
Confidence 577899988764
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.082 Score=58.41 Aligned_cols=187 Identities=13% Similarity=0.221 Sum_probs=117.8
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecC---CCC---EEEEEEC---CCeEEEEeC--CCceEEEEe
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM---DDD---YFISGSL---DAKVRIWSI--SDRLVVDWT 633 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~---~~~---~L~sgs~---Dg~I~IWDl--~~~~~~~~~ 633 (969)
..+++.....+-+.+||+ .|+.+..+.. +.++.+..-|. .+. ++++... +++|.+|++ .++.+....
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 356777788889999999 8888887754 66777777660 111 2333333 578999976 455543332
Q ss_pred c------CC-CCEEEEEE--ccC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 634 D------LH-EMVTAACY--TPD-GQ-NALIGSHKGSCRLYSIED---SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 634 ~------~~-~~V~sv~f--spd-g~-~Lasgs~dg~I~IwDl~~---~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
. .. ..+..+|+ +|. +. ++++...+|.+..|++.. +.......-. ......+-.+...+..
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~-----f~lgsq~EgcvvDd~~- 191 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA-----FKMNSQTEGMAADDEY- 191 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE-----EECSSCEEEEEEETTT-
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE-----ecCCCCcceEEEcCCC-
Confidence 1 11 45667787 674 44 678888899999999843 2221111111 1123468888898866
Q ss_pred ceEEEEeCCCcEEEEeCC--c--ceEEEEee--cC-CCCeEEEEE--eCCCC-EEEEEe-CCCcEEEEEcC
Q 002086 700 SEVLVTSADSRIRILDGL--D--IVHKFRGF--RN-TSSQISAAF--NADGK-YIISAS-EDSQVYVWKRE 759 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~--~--~~~~~~~~--~~-~~~V~sl~f--spdg~-~LaSgs-~Dg~I~IWdl~ 759 (969)
..|+++-.+..|..++.. . ........ .+ ...+..|++ .++++ ||++++ .+..+.+||..
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 689999998777777733 1 11122221 11 235777777 55666 677666 57799999996
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0091 Score=72.40 Aligned_cols=233 Identities=9% Similarity=0.006 Sum_probs=125.0
Q ss_pred cccCEEEEEEeCCCCEEEEEeC-CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGE-DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHS 528 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~-DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 528 (969)
+.....++++..++++++.||. +..+.+||..+++-.....
T Consensus 241 ~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~-------------------------------------- 282 (656)
T 1k3i_A 241 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD-------------------------------------- 282 (656)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCC--------------------------------------
T ss_pred CCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCC--------------------------------------
Confidence 3334446788899999999984 5689999988764332100
Q ss_pred CCCcccccceeeecCCCceeEeccCCCCEEEEEec-CCcEEEEEe-CC-----CcEEEEECCCCcEEEEe-----ecCCC
Q 002086 529 SPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS-RSHLLLSSS-MD-----KTVRLWDMETKSCLKLF-----AHNDY 596 (969)
Q Consensus 529 ~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs-~~~~L~Sgs-~D-----gtV~IWDl~t~~~i~~~-----~h~~~ 596 (969)
+...... .+++.. .+++++.|+ .+ ..+.+||..+.+....- .....
T Consensus 283 ---------------------~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~ 340 (656)
T 1k3i_A 283 ---------------------MQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA 340 (656)
T ss_dssp ---------------------CSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCC
T ss_pred ---------------------CCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccc
Confidence 0000001 123334 467778877 34 57999999987755431 00000
Q ss_pred eEEEEEecCCCCEEEEEECC---------CeEEEEeCCCceEEEEecC----------CCCEEEEEEcc-CCCEEEEEeC
Q 002086 597 VTCIQFNPMDDDYFISGSLD---------AKVRIWSISDRLVVDWTDL----------HEMVTAACYTP-DGQNALIGSH 656 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~D---------g~I~IWDl~~~~~~~~~~~----------~~~V~sv~fsp-dg~~Lasgs~ 656 (969)
-....+.. ++..++.|+.+ ..+..||..+..-...... ...-.++.|.. +++.+++|+.
T Consensus 341 ~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 341 DKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp CTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred cccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 00011112 34445555444 3567888877653322111 11234455543 6777788875
Q ss_pred CC-----------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-----------CcEEEE
Q 002086 657 KG-----------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-----------SRIRIL 714 (969)
Q Consensus 657 dg-----------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-----------g~I~Iw 714 (969)
++ .|.+||..+........ ........-.+++..|++ .++++|+.+ ..+.+|
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~-----~~mp~~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~y 493 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPNTVFAS-----NGLYFARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIY 493 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEECT-----TCCSSCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCeeEEcc-----CCCCCCcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEE
Confidence 43 67788887765433210 001111222344566777 678887754 458899
Q ss_pred eCCcceEEEEe-ec-CCCCeEEEEEeCCCCEEEEEeC
Q 002086 715 DGLDIVHKFRG-FR-NTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 715 D~~~~~~~~~~-~~-~~~~V~sl~fspdg~~LaSgs~ 749 (969)
|.....-.... .. .......+.+.+||+.++.|+.
T Consensus 494 dp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 494 VPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 96543322111 11 1112234556789999999985
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.034 Score=63.77 Aligned_cols=196 Identities=9% Similarity=0.037 Sum_probs=117.4
Q ss_pred CEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC---C-eEEEEeCCCce
Q 002086 556 DVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD---A-KVRIWSISDRL 628 (969)
Q Consensus 556 ~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D---g-~I~IWDl~~~~ 628 (969)
....|+|.+ +..|+.+...+.|+.+|..++.............+|+|++ +++++++.... . .+..++...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence 345788886 3566666655899999999888777766666789999999 78844444321 1 23333332221
Q ss_pred E-EEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 629 V-VDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 629 ~-~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
. ............++++| +|.++++-..++.|+.+|..++....... . ......-..++|+|++..++++-.
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~-----~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-M-----MDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-E-----CSCCSSCEEEEECTTSSEEEEEET
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-c-----cCCCCCcccEEEeCCCCEEEEEeC
Confidence 1 01111223456788999 66666666677889999998666521110 0 111223357999999844566666
Q ss_pred CCCcEEEEeCCc--c----eEEEEee-c------------CCCCeEEEEE---------eCCCCEEEEEeCCCcEEEEEc
Q 002086 707 ADSRIRILDGLD--I----VHKFRGF-R------------NTSSQISAAF---------NADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 707 ~Dg~I~IwD~~~--~----~~~~~~~-~------------~~~~V~sl~f---------spdg~~LaSgs~Dg~I~IWdl 758 (969)
..+.|+.++... . ...+.+. . .......+++ .++|.++++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 778999977331 1 1122221 1 0122456788 666666666666667777763
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.15 Score=56.25 Aligned_cols=142 Identities=12% Similarity=0.175 Sum_probs=92.4
Q ss_pred CCcEEEEEC--CCCcEEEEee-------cC-CCeEEEEE--ecCCCC-EEEEEECCCeEEEEeCC-------CceEEEEe
Q 002086 574 DKTVRLWDM--ETKSCLKLFA-------HN-DYVTCIQF--NPMDDD-YFISGSLDAKVRIWSIS-------DRLVVDWT 633 (969)
Q Consensus 574 DgtV~IWDl--~t~~~i~~~~-------h~-~~V~sv~f--sp~~~~-~L~sgs~Dg~I~IWDl~-------~~~~~~~~ 633 (969)
+++|.+|++ .++. +..++ .. ..+..+|+ +|..+. ++++...+|.+..|++. +.+++..+
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 588999966 4444 44442 22 56777888 663343 68888889999999982 33566677
Q ss_pred cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEE--cCCCCceEEEEe-CCCc
Q 002086 634 DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQF--SPSNPSEVLVTS-ADSR 710 (969)
Q Consensus 634 ~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~f--spd~~~~l~sgs-~Dg~ 710 (969)
.....+..+.+.+....|+++-++..|..|+.+...-.....+... ....-...+..|++ .+++..+|++++ .+.+
T Consensus 177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~-~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA-DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB-SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe-cCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 7778899999999999999999997777777553221000001000 01222236888887 455533666665 5678
Q ss_pred EEEEeCC
Q 002086 711 IRILDGL 717 (969)
Q Consensus 711 I~IwD~~ 717 (969)
..+||..
T Consensus 256 ~~Vydr~ 262 (355)
T 3amr_A 256 YAIYDRQ 262 (355)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 9999964
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.82 E-value=0.17 Score=55.30 Aligned_cols=179 Identities=7% Similarity=-0.069 Sum_probs=110.9
Q ss_pred CCcEEEEECCCCc--EEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceE--EEEecCCCCEEEEEEccCCC
Q 002086 574 DKTVRLWDMETKS--CLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV--VDWTDLHEMVTAACYTPDGQ 649 (969)
Q Consensus 574 DgtV~IWDl~t~~--~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~--~~~~~~~~~V~sv~fspdg~ 649 (969)
...|+..++.... ....+.....+.+++|++.++.++.+-...+.|..+++..+.. ......-.....+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4678889988763 2233333456778999984445555656678899999877631 11222224467789987555
Q ss_pred EE-EEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe-CCCcEEEEeCCcceEEEEeec
Q 002086 650 NA-LIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-ADSRIRILDGLDIVHKFRGFR 727 (969)
Q Consensus 650 ~L-asgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg~I~IwD~~~~~~~~~~~~ 727 (969)
.| ++-...+.|.++++......... .........+++.|.++.++++-. ..+.|+..+............
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~--------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLF--------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEE--------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEE--------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 44 45556789999998765332111 123456789999987644444432 357888888543222211122
Q ss_pred CCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 728 NTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 728 ~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
....-..++|++++..|..+. ..+.|..++++.
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 234457899999766665554 567899999874
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.23 Score=61.25 Aligned_cols=180 Identities=8% Similarity=-0.059 Sum_probs=116.9
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc----eEEEEec-CCCCEEEEEEccC
Q 002086 573 MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR----LVVDWTD-LHEMVTAACYTPD 647 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~----~~~~~~~-~~~~V~sv~fspd 647 (969)
....|+..++.......+......+..|+|++..+.++++-...+.|+.+++... ....+.. .......|++.+.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 3456888888877766666667788999999844455556566788999998753 2222332 3355778999987
Q ss_pred CCEEE-EEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-CcEEEEeCCcceEEEEe
Q 002086 648 GQNAL-IGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-SRIRILDGLDIVHKFRG 725 (969)
Q Consensus 648 g~~La-sgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-g~I~IwD~~~~~~~~~~ 725 (969)
+..|+ +-...+.|.+.++......... .........|++.|.++.++++-... +.|...++.........
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~--------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLF--------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEE--------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEE--------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence 76555 4456789999999865432221 12344588999999764444444333 67888886544333333
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 726 FRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 726 ~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
.........|++++.+..|+.+. ....|...+++.
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 33345678999998766666554 456788888865
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.56 Score=56.32 Aligned_cols=197 Identities=7% Similarity=0.026 Sum_probs=128.5
Q ss_pred CCEEEEEecC-C-cEEEEEeCCCcEEEEECCCCcEEEEeec-CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE
Q 002086 555 DDVLDLSWSR-S-HLLLSSSMDKTVRLWDMETKSCLKLFAH-NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD 631 (969)
Q Consensus 555 ~~I~~l~fs~-~-~~L~Sgs~DgtV~IWDl~t~~~i~~~~h-~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~ 631 (969)
..+.+|+|.+ + .++++-..++.|..+++........+.. ......|++.+..++++++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 4577899987 4 4555556788999999887655444432 24578899987445566666667889999997654433
Q ss_pred Ee-cCCCCEEEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 632 WT-DLHEMVTAACYTPDGQNALIGS--HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 632 ~~-~~~~~V~sv~fspdg~~Lasgs--~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
+. ..-.....|++.|....|+... ..+.|...++......... ........|++++++..++++-...
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~---------~~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV---------PNVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE---------CSCSSEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE---------CCCCCcceEEEccccCEEEEEECCC
Confidence 33 3345689999999666666554 2568888888765432221 1345678999999875666666777
Q ss_pred CcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 709 SRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 709 g~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
+.|..+|.......... ........+++.. +.++++-...+.|...|..+++
T Consensus 188 ~~I~~~d~dG~~~~v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 188 NLIESSNMLGLNREVIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TEEEEEETTSCSCEEEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEcCCCCceEEee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 88999986432222211 1223345777765 4455555557889888876643
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.038 Score=65.98 Aligned_cols=60 Identities=17% Similarity=0.071 Sum_probs=43.1
Q ss_pred CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 616 DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 616 Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
+|.|..||+.+++++-.......+..-.+...+.++++|+.||.++.||.++++.+....
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 688999999999877544433333222222346788889999999999999999875543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.053 Score=59.42 Aligned_cols=166 Identities=7% Similarity=0.054 Sum_probs=108.3
Q ss_pred cCCCeEEEEEecCCCCEEEEEE-CCCeEEEEeCCCceEEEE-ecC-----C--CCEEEEEE---ccCCCEEEEEeC----
Q 002086 593 HNDYVTCIQFNPMDDDYFISGS-LDAKVRIWSISDRLVVDW-TDL-----H--EMVTAACY---TPDGQNALIGSH---- 656 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IWDl~~~~~~~~-~~~-----~--~~V~sv~f---spdg~~Lasgs~---- 656 (969)
......+++|++ ....|+.++ ..++|..||...+..... ... . ..+..+.| .|+++++++...
T Consensus 11 ~~~yPE~~~wd~-~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDR-TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEET-TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred cccCCcCccCcC-CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 344566789988 555555555 789999999986654443 221 1 13689999 688777776442
Q ss_pred ---------CCcEEEEEcC---CCceeeeeeeeeccc----ccC-CCCCeEEEEEcCCCCceEEEEeCC-CcEEEEeCCc
Q 002086 657 ---------KGSCRLYSIE---DSKLHQLNQVDFQTK----KKS-STRKITGFQFSPSNPSEVLVTSAD-SRIRILDGLD 718 (969)
Q Consensus 657 ---------dg~I~IwDl~---~~~~~~~~~~~~~~~----~~~-h~~~It~l~fspd~~~~l~sgs~D-g~I~IwD~~~ 718 (969)
+..+..||+. +++......+.-... ..+ .......++..++| +.+++++.. +.|...+...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCC
Confidence 6789999999 666543322210000 001 22358899999988 677777777 8888887543
Q ss_pred c-eEEEEe-e---cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 719 I-VHKFRG-F---RNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 719 ~-~~~~~~-~---~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
. ...+.. . ......+.++++|+|.+|++....|.|..+|+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2 222211 1 1122356899999999999887799999999984
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.98 Score=49.20 Aligned_cols=190 Identities=8% Similarity=0.040 Sum_probs=100.2
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEE-EEeC--CCceEEE
Q 002086 557 VLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVR-IWSI--SDRLVVD 631 (969)
Q Consensus 557 I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~-IWDl--~~~~~~~ 631 (969)
+..+.+.++..++.++.++.|.. ....++..... .....+..+++.+ ++.+++++ .+|.|. -+|- .+=+.+.
T Consensus 124 ~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~G~~~~S~d~gG~tW~~~~ 200 (327)
T 2xbg_A 124 PRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVS-SRGSFYSTWEPGQTAWEPHN 200 (327)
T ss_dssp EEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEE-TTSSEEEEECTTCSSCEEEE
T ss_pred eEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEE-CCCcEEEEeCCCCCceeECC
Confidence 45566654333444445665432 22234333222 4556789999998 67666655 445444 3442 1112222
Q ss_pred EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcE
Q 002086 632 WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRI 711 (969)
Q Consensus 632 ~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I 711 (969)
......+..+.+.+++..+ +++.+|.+++.+...++.-.... .........+..+.+.+++ .+++++.++.|
T Consensus 201 -~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~----~~~~~~~~~~~~v~~~~~~--~~~~~g~~g~i 272 (327)
T 2xbg_A 201 -RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELL----SPLRRNSVGFLDLAYRTPN--EVWLAGGAGAL 272 (327)
T ss_dssp -CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCB----CTTSSCCSCEEEEEESSSS--CEEEEESTTCE
T ss_pred -CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEecc----CCcccCCcceEEEEecCCC--EEEEEeCCCeE
Confidence 2344678899999988765 44567887776433232211110 0000123458899998865 44555567777
Q ss_pred EEE-eCCcceEEEEee-cCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 712 RIL-DGLDIVHKFRGF-RNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 712 ~Iw-D~~~~~~~~~~~-~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
+.- |....-...... .....+.++.|.+++ .++.++.+|.|.-++-
T Consensus 273 ~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 273 LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 443 222111111111 123456788887555 4666777998776653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.069 Score=63.85 Aligned_cols=196 Identities=13% Similarity=0.118 Sum_probs=118.7
Q ss_pred CcEEEEEeC-CCcEEEEEC-CCCcEEEEeecCCC------------eEEEEEecCCCCE----EEEEECCCeEEEEeCCC
Q 002086 565 SHLLLSSSM-DKTVRLWDM-ETKSCLKLFAHNDY------------VTCIQFNPMDDDY----FISGSLDAKVRIWSISD 626 (969)
Q Consensus 565 ~~~L~Sgs~-DgtV~IWDl-~t~~~i~~~~h~~~------------V~sv~fsp~~~~~----L~sgs~Dg~I~IWDl~~ 626 (969)
+..|+.++. ++.|.-+|. .+|+.+-.+..... ...+++.| .+.. |+.++.|+.|..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP-GDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC-CCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe-cCCcceeEEEEEcCCCEEEEEECCC
Confidence 577777887 899999999 99999877743221 12355644 3344 88888999999999999
Q ss_pred ceEEEEecCCC-----CEEE-EEEccCCCEEEEEe------CCCcEEEEEcCCCceeeeeeeeecccc------------
Q 002086 627 RLVVDWTDLHE-----MVTA-ACYTPDGQNALIGS------HKGSCRLYSIEDSKLHQLNQVDFQTKK------------ 682 (969)
Q Consensus 627 ~~~~~~~~~~~-----~V~s-v~fspdg~~Lasgs------~dg~I~IwDl~~~~~~~~~~~~~~~~~------------ 682 (969)
++++-...... .+.+ ..+ .+ ..+++++ .+|.|+-+|..+++..-..........
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v-~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYV-VK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEE-ET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCEEEeecCCCCCccceeecCCEE-EC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 98875443322 1211 111 13 3566655 379999999999987644332110000
Q ss_pred -----------------cCCCCCe-EEEEEcCCCCceEEEEeCC----------------CcEEEEeCCcceEEEEeecC
Q 002086 683 -----------------KSSTRKI-TGFQFSPSNPSEVLVTSAD----------------SRIRILDGLDIVHKFRGFRN 728 (969)
Q Consensus 683 -----------------~~h~~~I-t~l~fspd~~~~l~sgs~D----------------g~I~IwD~~~~~~~~~~~~~ 728 (969)
......+ ..+++.+.. ..++.+..+ +.|..+|..+..........
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 0000001 134555655 466666554 37888887765554443221
Q ss_pred CC---------CeEEEEEe-CCC---CEEEEEeCCCcEEEEEcCCCCcc
Q 002086 729 TS---------SQISAAFN-ADG---KYIISASEDSQVYVWKREEHRNA 764 (969)
Q Consensus 729 ~~---------~V~sl~fs-pdg---~~LaSgs~Dg~I~IWdl~t~~~~ 764 (969)
.. ...-+... .+| ..|+.++.+|.|+++|..+++.+
T Consensus 298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 11 11112332 577 57888999999999999985443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0053 Score=75.07 Aligned_cols=197 Identities=10% Similarity=0.003 Sum_probs=117.4
Q ss_pred CCEEEEEecC-CcEEEEE-eCCCcEEEEECCC----CcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc
Q 002086 555 DDVLDLSWSR-SHLLLSS-SMDKTVRLWDMET----KSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR 627 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~t----~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~ 627 (969)
..+.+|+|.+ ++.|+.+ ...+.|+.+++.. ......+. .......|++.+..++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4566788887 5555544 4568899999875 22222221 22345678887635556666566788999999876
Q ss_pred eEEEEecC-CCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 628 LVVDWTDL-HEMVTAACYTPDGQNALIGSH--KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 628 ~~~~~~~~-~~~V~sv~fspdg~~Lasgs~--dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
....+... ......|++.|.+.+|+.... .+.|.++++......... .........|+|+|++..++++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~--------~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--------TENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES--------CSSCSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE--------eCCCCCccEEEEeccCCEEEEE
Confidence 65554432 245678899997665555432 367888877653321110 1123456789999987666676
Q ss_pred EeCCCcEEEEeCCcc-eEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 705 TSADSRIRILDGLDI-VHKFRG-FRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~-~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
-...+.|..++.... ...+.. .........|++..+ .++++....+.|..++..+
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 677888999986432 222211 111122334555544 4455555667888888765
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.44 Score=57.18 Aligned_cols=201 Identities=6% Similarity=-0.009 Sum_probs=121.4
Q ss_pred CCCCEEEEEecC-CcEEEEE-eCCCcEEEEECCCCcE-EEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce
Q 002086 553 HLDDVLDLSWSR-SHLLLSS-SMDKTVRLWDMETKSC-LKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL 628 (969)
Q Consensus 553 H~~~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~t~~~-i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~ 628 (969)
......+|+|++ ++.|+.+ ...+.|..+++..... ...+. .-.....|++.+..++++++-...+.|.+.++....
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence 445678899987 5555544 4567899999876532 22332 225789999998445555666667899999998765
Q ss_pred EEEEe-cCCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE
Q 002086 629 VVDWT-DLHEMVTAACYTPDGQNALIGSH--KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 629 ~~~~~-~~~~~V~sv~fspdg~~Lasgs~--dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg 705 (969)
...+. ..-.....|++.|.+.+|+.... .+.|...++......... ........+|++++++..++++-
T Consensus 118 ~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~--------~~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 118 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII--------NSEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--------CSSCSSEEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE--------eCCCCCCcEEEEEccCCEEEEEe
Confidence 44443 33455788999997666665553 467777777654332211 12345678999999875666666
Q ss_pred eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 706 SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 706 s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
...+.|..++...................+++..+ .++++-...+.|...|..+++
T Consensus 190 ~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 190 AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp TTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred CCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 67788999886432221111101112235666655 444444456789888887654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.21 E-value=1.4 Score=48.62 Aligned_cols=190 Identities=9% Similarity=-0.036 Sum_probs=94.3
Q ss_pred CCEEEEEecCC----cEEEEEeC-C-----CcEEEEECCCCcE-----E-EEeec----CCCeEEEEEecCCCCEEEEEE
Q 002086 555 DDVLDLSWSRS----HLLLSSSM-D-----KTVRLWDMETKSC-----L-KLFAH----NDYVTCIQFNPMDDDYFISGS 614 (969)
Q Consensus 555 ~~I~~l~fs~~----~~L~Sgs~-D-----gtV~IWDl~t~~~-----i-~~~~h----~~~V~sv~fsp~~~~~L~sgs 614 (969)
.....|+|+|+ ..|+.+.. . ..|..|+...+.. + ..+.. ......|+|.| ++.++++.+
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 45678888885 45544433 2 6688888765421 1 11221 12346899999 887666643
Q ss_pred C-------------CCeEEEEeCCCc-------------e-EEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcE------
Q 002086 615 L-------------DAKVRIWSISDR-------------L-VVDWTDLHEMVTAACYTP-DGQNALIGSHKGSC------ 660 (969)
Q Consensus 615 ~-------------Dg~I~IWDl~~~-------------~-~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I------ 660 (969)
. .|.|.-++.... . .+...++ .....++|+| ++.++++-...+.+
T Consensus 154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~d 232 (352)
T 2ism_A 154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHD 232 (352)
T ss_dssp CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCC
T ss_pred CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence 2 256666665431 1 1111222 3367789999 66655553333321
Q ss_pred EEEEcCCCceeee---------e-eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce------EEEE
Q 002086 661 RLYSIEDSKLHQL---------N-QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV------HKFR 724 (969)
Q Consensus 661 ~IwDl~~~~~~~~---------~-~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~------~~~~ 724 (969)
.|.-+..+...-. . ....... ..+......++|. ++ .++++....+.|...+..... ....
T Consensus 233 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~-~~~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~ 309 (352)
T 2ism_A 233 EVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF-WPQGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVET 309 (352)
T ss_dssp EEEEECTTCBCCTTTCCSCCCCTTSCCCSEE-CTTCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEeccCCcCCCCcccCCCCCCCCcCCeEe-cCCCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchhe
Confidence 2222222220000 0 0000000 1122345677773 34 455555556677776643211 0111
Q ss_pred eecCCCCeEEEEEeCCCCEEEEEeC
Q 002086 725 GFRNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 725 ~~~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
.......+..+++.|||.++++...
T Consensus 310 ~~~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 310 ALSGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp EEESSCCEEEEEECTTSCEEEEECS
T ss_pred ecccCCCeeEEEECCCCcEEEEEeC
Confidence 1123456889999999987776543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.3 Score=56.73 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=95.7
Q ss_pred CEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEEEEeec----CCCeEEEEE-------ecCCCCEEEEEECCC----
Q 002086 556 DVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCLKLFAH----NDYVTCIQF-------NPMDDDYFISGSLDA---- 617 (969)
Q Consensus 556 ~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h----~~~V~sv~f-------sp~~~~~L~sgs~Dg---- 617 (969)
....|+|.| ++++++-...+.|++.|+.++.......- ......|+| ++ ++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467889987 23444444457799999998887776632 235899999 98 788666665554
Q ss_pred ---eEEEEeCCC-ceEE-----EEecCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcC-------CCcee-e-------
Q 002086 618 ---KVRIWSISD-RLVV-----DWTDLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIE-------DSKLH-Q------- 672 (969)
Q Consensus 618 ---~I~IWDl~~-~~~~-----~~~~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~-------~~~~~-~------- 672 (969)
.|.+++... +... ...........++++|+ +.++++-..++.|..+|+. ++... .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266775443 1211 11111123457788995 4555566678889999997 45430 0
Q ss_pred -eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 673 -LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 673 -~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
...+ + ..........|+|+|++..++++-+..+.|+.++
T Consensus 299 ~~~~l-~---~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 299 TFKQL-F---TIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp TEEEE-E---ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cccee-E---ecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 0000 0 0122345689999999843555557778899866
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.021 Score=69.70 Aligned_cols=178 Identities=7% Similarity=-0.084 Sum_probs=104.8
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEE-ECCCeEEEEeCCC----ceEEEEec-CCCCEEEEEEccC
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISG-SLDAKVRIWSISD----RLVVDWTD-LHEMVTAACYTPD 647 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sg-s~Dg~I~IWDl~~----~~~~~~~~-~~~~V~sv~fspd 647 (969)
.+.|+..++.+.+...++.....+..|+|++ ....|+.+ ...+.|+.+++.+ .....+.. .......|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 3577888888777666555556678899998 55555444 4567899999875 22222221 1223556888865
Q ss_pred CC-EEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC-CcEEEEeCCcceEEEEe
Q 002086 648 GQ-NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD-SRIRILDGLDIVHKFRG 725 (969)
Q Consensus 648 g~-~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D-g~I~IwD~~~~~~~~~~ 725 (969)
+. ++++-...+.|.++++......... .........|++.|.+..++++-... +.|+++++.........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~--------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLF--------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEEC--------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEE--------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 44 4444456788999998765432221 11223456788998764444444333 67888775432221111
Q ss_pred ecCCCCeEEEEEeCCCCEE-EEEeCCCcEEEEEcCC
Q 002086 726 FRNTSSQISAAFNADGKYI-ISASEDSQVYVWKREE 760 (969)
Q Consensus 726 ~~~~~~V~sl~fspdg~~L-aSgs~Dg~I~IWdl~t 760 (969)
.........|+|+|++..| ++-...+.|.+++++.
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 1122335679999876544 4545567899999864
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=2.5 Score=46.65 Aligned_cols=189 Identities=14% Similarity=0.033 Sum_probs=96.5
Q ss_pred CCEEEEEecCC----cEEEEEeC----C----CcEEEEECCCC--c-----EE-EEee--cCCCeEEEEEecCCCCEEEE
Q 002086 555 DDVLDLSWSRS----HLLLSSSM----D----KTVRLWDMETK--S-----CL-KLFA--HNDYVTCIQFNPMDDDYFIS 612 (969)
Q Consensus 555 ~~I~~l~fs~~----~~L~Sgs~----D----gtV~IWDl~t~--~-----~i-~~~~--h~~~V~sv~fsp~~~~~L~s 612 (969)
.....|+++|+ ..|+.+.. + ..|..|+.... . .+ ..+. .......|+|.| ++.++++
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt 151 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYIT 151 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEE
Confidence 34677888874 45554433 2 56777776654 1 11 1121 122356799999 8887776
Q ss_pred EEC-------------CCeEEEEeCCCc---------eEEEEecCCCCEEEEEEcc-CCCEEEEEeCCC---cEEEEEcC
Q 002086 613 GSL-------------DAKVRIWSISDR---------LVVDWTDLHEMVTAACYTP-DGQNALIGSHKG---SCRLYSIE 666 (969)
Q Consensus 613 gs~-------------Dg~I~IWDl~~~---------~~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg---~I~IwDl~ 666 (969)
.+. .|.|.-++.... ..+...++ .....++|+| +|.++++-...+ .|.+. .
T Consensus 152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~ 228 (354)
T 3a9g_A 152 TGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNII--L 228 (354)
T ss_dssp CCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--C
T ss_pred ECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--c
Confidence 442 245666665432 11222223 3356799999 666555432221 23332 2
Q ss_pred CCceee---------ee-eeeecccccCCCCCeEEEEEc-------CCCCceEEEEeCCCcEEEEeCCcc--eE-EEEee
Q 002086 667 DSKLHQ---------LN-QVDFQTKKKSSTRKITGFQFS-------PSNPSEVLVTSADSRIRILDGLDI--VH-KFRGF 726 (969)
Q Consensus 667 ~~~~~~---------~~-~~~~~~~~~~h~~~It~l~fs-------pd~~~~l~sgs~Dg~I~IwD~~~~--~~-~~~~~ 726 (969)
.+...- .. .................++|. .++ .++++.-..+.|...+.... .. .....
T Consensus 229 ~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~ 307 (354)
T 3a9g_A 229 KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFF 307 (354)
T ss_dssp TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEEC
T ss_pred CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeec
Confidence 221000 00 000000000123467888884 334 55555566677888775532 11 11222
Q ss_pred c-CCCCeEEEEEeCCCCEEEEEe
Q 002086 727 R-NTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 727 ~-~~~~V~sl~fspdg~~LaSgs 748 (969)
. ....+..+++.|||.++++..
T Consensus 308 ~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 308 KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCCeeEEEECCCCcEEEEEe
Confidence 1 245688999999998777664
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=2.1 Score=51.21 Aligned_cols=197 Identities=9% Similarity=-0.010 Sum_probs=121.3
Q ss_pred CCEEEEEecC-CcEEEEE-eCCCcEEEEECCCCcEEEEee-------cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 002086 555 DDVLDLSWSR-SHLLLSS-SMDKTVRLWDMETKSCLKLFA-------HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~t~~~i~~~~-------h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~ 625 (969)
..+.+|+|.+ ++.|+.+ ...+.|+.+++........+. ....+..|++....++++++-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 4578899987 5555444 456788888887554333332 234688999998445566677778899999987
Q ss_pred CceEEEEe-cCCCCEEEEEEcc-CCCEEEEEeCCC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 626 DRLVVDWT-DLHEMVTAACYTP-DGQNALIGSHKG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 626 ~~~~~~~~-~~~~~V~sv~fsp-dg~~Lasgs~dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
......+. ........|++.| .|.++++-.... .|...++......... .........|++.+.+..+
T Consensus 420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~--------~~~l~~P~gla~D~~~~~L 491 (628)
T 4a0p_A 420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLF--------FSGLSKPIALALDSRLGKL 491 (628)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEE--------CSSCSCEEEEEEETTTTEE
T ss_pred CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEE--------eccCCCccEEEEeCCCCEE
Confidence 65433333 2346789999999 455445533332 5777777654332211 2234567899999987455
Q ss_pred EEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 702 VLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 702 l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+++-+..+.|...+.... ...+. .........+++.. +.++.+=.....|...|..++
T Consensus 492 Yw~D~~~~~I~~~~~dG~~r~~~~-~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G 550 (628)
T 4a0p_A 492 FWADSDLRRIESSDLSGANRIVLE-DSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGR 550 (628)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEE-CSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSS
T ss_pred EEEeCCCCEEEEEeCCCCceEEEE-cCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCC
Confidence 555566788999986432 22222 12233456677654 444555555667777777653
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.81 E-value=2.7 Score=46.25 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=39.4
Q ss_pred CCeEEEEEcCC------CCceEEEEeCCCcEEEEeCCcc--eEEEEee-cCCCCeEEEEEeCCCCEEEEEe-CCCcEEEE
Q 002086 687 RKITGFQFSPS------NPSEVLVTSADSRIRILDGLDI--VHKFRGF-RNTSSQISAAFNADGKYIISAS-EDSQVYVW 756 (969)
Q Consensus 687 ~~It~l~fspd------~~~~l~sgs~Dg~I~IwD~~~~--~~~~~~~-~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IW 756 (969)
..+..+.|... ...++++....+.|...+.... ....... .....+..+++.|||.++++.. .+| +||
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ 348 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELL 348 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEE
Confidence 35677888642 1255665566677777664432 1111112 1234688999999998766543 344 344
Q ss_pred Ec
Q 002086 757 KR 758 (969)
Q Consensus 757 dl 758 (969)
.+
T Consensus 349 ri 350 (353)
T 2g8s_A 349 KV 350 (353)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=3 Score=46.08 Aligned_cols=191 Identities=11% Similarity=0.134 Sum_probs=109.6
Q ss_pred CEEEEEecCCcEEEEEe-------------CCCcEEEEECCC--CcEEE--Eee-----cCCCeEEEEEecC-CCC-EEE
Q 002086 556 DVLDLSWSRSHLLLSSS-------------MDKTVRLWDMET--KSCLK--LFA-----HNDYVTCIQFNPM-DDD-YFI 611 (969)
Q Consensus 556 ~I~~l~fs~~~~L~Sgs-------------~DgtV~IWDl~t--~~~i~--~~~-----h~~~V~sv~fsp~-~~~-~L~ 611 (969)
..-++...++..+++++ .+|.|.++|..+ .+... ..+ .......|.+.+. ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34456666755556655 799999999984 33222 112 1236778887662 232 444
Q ss_pred EEE-C--CCeEEEEeCCC--ceEE--EEecC--CCCEEEEEEccCCCEEEEEeC-----------------CCcEEEEEc
Q 002086 612 SGS-L--DAKVRIWSISD--RLVV--DWTDL--HEMVTAACYTPDGQNALIGSH-----------------KGSCRLYSI 665 (969)
Q Consensus 612 sgs-~--Dg~I~IWDl~~--~~~~--~~~~~--~~~V~sv~fspdg~~Lasgs~-----------------dg~I~IwDl 665 (969)
++. . +.+|.+|++.. +... ....+ -...+.+.+.++|.++++... .|.|+.||.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 442 2 46677877654 3222 22222 256889999999987776541 234444544
Q ss_pred CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeC-CCC
Q 002086 666 EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNA-DGK 742 (969)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fsp-dg~ 742 (969)
++.... .......+.++|+|++..++++-+..+.|+.|+... .......+......-.+++.+ +|.
T Consensus 211 --~~~~~~---------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 211 --NDVRVV---------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD 279 (355)
T ss_dssp --TCCEEE---------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC
T ss_pred --CeEEEe---------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCc
Confidence 322111 112345789999999855666667788999998542 111111222244566788999 598
Q ss_pred EEEEEeCC-CcEEEEE
Q 002086 743 YIISASED-SQVYVWK 757 (969)
Q Consensus 743 ~LaSgs~D-g~I~IWd 757 (969)
+.+++..+ +.|..|+
T Consensus 280 lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEEEEESCHHHHHSCC
T ss_pred EEEEecCCceEEEEEC
Confidence 88877644 3444443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.58 Score=52.78 Aligned_cols=149 Identities=11% Similarity=0.179 Sum_probs=91.6
Q ss_pred CCCEEEEEECCCeEEEEeCCCce---EEEEec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee--------
Q 002086 606 DDDYFISGSLDAKVRIWSISDRL---VVDWTD--LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ-------- 672 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~---~~~~~~--~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~-------- 672 (969)
++..++.+- ++.||.-++..+. .+.... ....|..+..+|+|.+||..+ +..|.|..+..+....
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 444444443 4667777766332 222221 123578899999999999886 5588998887432111
Q ss_pred --eeeeeecccccCCCCCeEEEEEcCCCC--ceEEEEeCCCcEEEEeCCc----ce------EEEEeecCCCCeEEEEEe
Q 002086 673 --LNQVDFQTKKKSSTRKITGFQFSPSNP--SEVLVTSADSRIRILDGLD----IV------HKFRGFRNTSSQISAAFN 738 (969)
Q Consensus 673 --~~~~~~~~~~~~h~~~It~l~fspd~~--~~l~sgs~Dg~I~IwD~~~----~~------~~~~~~~~~~~V~sl~fs 738 (969)
...+.+.........+|..+.|+|-+. ..|++-..|+.|++||+.. .. ..+........|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 111222111122467899999999653 4899999999999999653 11 111111122568899999
Q ss_pred CCCCEEEEEe--CCCcEEEE
Q 002086 739 ADGKYIISAS--EDSQVYVW 756 (969)
Q Consensus 739 pdg~~LaSgs--~Dg~I~IW 756 (969)
.++-.|...+ +.|.|+-.
T Consensus 189 ~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEE
T ss_pred CCCcEEEEEecCCCCCEEEE
Confidence 9887666655 77887753
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=4.6 Score=48.25 Aligned_cols=196 Identities=6% Similarity=0.003 Sum_probs=118.2
Q ss_pred CCEEEEEecC-CcEEE-EEeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE
Q 002086 555 DDVLDLSWSR-SHLLL-SSSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD 631 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~-Sgs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~ 631 (969)
..+.+|+|.+ ++.|+ +-...+.|+.+++........+. .-.....|++.+..++++++-...+.|.+.++.......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 4577899987 45544 44467889999987654444442 235678899987455666666677899999988764433
Q ss_pred Eec-CCCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 632 WTD-LHEMVTAACYTPDGQNALIGSH--KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 632 ~~~-~~~~V~sv~fspdg~~Lasgs~--dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
+.. .-.....|++.|...+|..... ...|...++......... .........|++++.+..++++-+..
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~--------~~~l~~P~GlalD~~~~~LY~aD~~~ 500 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV--------NTSLGWPNGLALDYDEGKIYWGDAKT 500 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--------CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE--------eCCCCCCeeeEEcccCCEEEEEECCC
Confidence 332 3366899999997555554442 367777777654322111 22345678999998774555555667
Q ss_pred CcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 709 SRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 709 g~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+.|..++.... ...+.. ........+++..+ .+.++-...+.|...+..+
T Consensus 501 ~~I~~~~~dG~~~~~~~~-~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~ 551 (619)
T 3s94_A 501 DKIEVMNTDGTGRRVLVE-DKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRS 551 (619)
T ss_dssp TEEEEEESSSCCCEEEEE-CCCCSSCCEEEETT-EEEEECTTSSCEEEEESSS
T ss_pred CEEEEEecCCCceEEEec-cCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCC
Confidence 78988885432 222211 11112234555433 3333333455677666665
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.89 Score=50.44 Aligned_cols=139 Identities=11% Similarity=0.093 Sum_probs=82.9
Q ss_pred CCCeEEEEeCCC--ceEE--EEecC-----CCCEEEEEEcc--CCC-EEEEE-eC--CCcEEEEEcCCCceeeeeeeeec
Q 002086 615 LDAKVRIWSISD--RLVV--DWTDL-----HEMVTAACYTP--DGQ-NALIG-SH--KGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 615 ~Dg~I~IWDl~~--~~~~--~~~~~-----~~~V~sv~fsp--dg~-~Lasg-s~--dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
.+|.|.++|+.+ .+.. ...+. .-....+.+.+ ++. +|+++ .. +.+|.+|++............+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999973 3332 23321 13567777766 454 34443 33 46788887765422111111111
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEe-----------------CCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCC
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTS-----------------ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGK 742 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs-----------------~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~ 742 (969)
.......+.+.+.+++ .++++.. ..+.|+.+|..+....... -..-+.++|+||++
T Consensus 161 ---g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~---l~~pNGia~spDg~ 233 (355)
T 3sre_A 161 ---HKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEG---FDFANGINISPDGK 233 (355)
T ss_dssp ---CTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEE---ESSEEEEEECTTSS
T ss_pred ---cCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecC---CcccCcceECCCCC
Confidence 2234578899999987 5555543 1356777776543332222 23457899999998
Q ss_pred EEEEEe-CCCcEEEEEcCC
Q 002086 743 YIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 743 ~LaSgs-~Dg~I~IWdl~t 760 (969)
+|+.+. ..+.|+.|++..
T Consensus 234 ~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 234 YVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEEGGGTEEEEEEECT
T ss_pred EEEEEeCCCCeEEEEEECC
Confidence 877665 467899999974
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.19 Score=51.76 Aligned_cols=182 Identities=9% Similarity=0.006 Sum_probs=102.9
Q ss_pred cEEEEEeCCCcEEEEECCCCc------EEEEeec--CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCC
Q 002086 566 HLLLSSSMDKTVRLWDMETKS------CLKLFAH--NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHE 637 (969)
Q Consensus 566 ~~L~Sgs~DgtV~IWDl~t~~------~i~~~~h--~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~ 637 (969)
.+|++...| +|+.=-...+. ....++. =..+..++|+| ++.+.++ .+|.++-.+..+.....+.....
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 456666666 66655555444 2344444 35788999999 8886666 67888777765532222222222
Q ss_pred C--------EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 638 M--------VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 638 ~--------V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
. -.++.|.|+|.+.++ .||.|+-++-.+........ .-.......-..+..|.|.|++ .|.+.. |+
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~-~a~~vg~~gw~~~~~lff~p~G--~Lyav~-dg 154 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIA-RATEVGSGGWSGFKFLFFHPNG--YLYAVH-GQ 154 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHH-HSEEEECSSGGGEEEEEECTTS--CEEEEE-TT
T ss_pred EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceec-cccEeccCCCCceEEEEECCCc--eEEEEe-CC
Confidence 2 378999999988888 56988877653321110000 0000001223567999999998 444444 88
Q ss_pred cEEEEeCC-cc------eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 710 RIRILDGL-DI------VHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 710 ~I~IwD~~-~~------~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.++-+..- .. .....+........-+.|+++|.+.+.. +| +||....+
T Consensus 155 ~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 155 QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESCC
T ss_pred cEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCCc
Confidence 76543311 00 1122222233334457799999877766 66 55665554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.01 E-value=3.5 Score=53.01 Aligned_cols=180 Identities=6% Similarity=0.068 Sum_probs=109.4
Q ss_pred CcEEEEEe----------CCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 565 SHLLLSSS----------MDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 565 ~~~L~Sgs----------~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
..+|+.|. ..|.|.++++..++..... ...++|++++-- .+ +|++|- ..+|++|++...+.+..
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g-~Lla~i-g~~l~vy~l~~~~~L~~ 919 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NG-KLLASI-NSTVRLYEWTTEKELRT 919 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TT-EEEEEE-TTEEEEEEECTTSCEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CC-EEEEEc-CCEEEEEECCCCceEEE
Confidence 47888886 3578999999755433332 567899999865 35 555443 57899999987643331
Q ss_pred -ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc--CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCC
Q 002086 633 -TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSI--EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADS 709 (969)
Q Consensus 633 -~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl--~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg 709 (969)
......|..+.....++++++|..-..|.++.. ..+++.... .......++++.|-.++ .++.+..+|
T Consensus 920 ~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a-------~D~~~~~vta~~~ld~~--t~l~aD~~g 990 (1158)
T 3ei3_A 920 ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA-------RDFNPNWMSAVEILDDD--NFLGAENAF 990 (1158)
T ss_dssp EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE-------ECCSCBCEEEEEEEETT--EEEEEETTS
T ss_pred EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE-------eecccccEEEEEEEccC--cEEEEcCCC
Confidence 111112333344446789999998877777544 333332211 14456778999887654 788899999
Q ss_pred cEEEEeCCc---------ceEEEEeecCCCCeEEEE---EeCC---------CCEEEEEeCCCcEEEEE
Q 002086 710 RIRILDGLD---------IVHKFRGFRNTSSQISAA---FNAD---------GKYIISASEDSQVYVWK 757 (969)
Q Consensus 710 ~I~IwD~~~---------~~~~~~~~~~~~~V~sl~---fspd---------g~~LaSgs~Dg~I~IWd 757 (969)
.|.++.... .......+.....|+++. +.+. ...++-++.+|.|.+.-
T Consensus 991 Nl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 991 NLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred cEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 999886211 111222222344566654 2222 23467777788877654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.72 E-value=6.3 Score=43.35 Aligned_cols=243 Identities=11% Similarity=0.032 Sum_probs=124.8
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
+-..-..-+.|+|.|||++|++--..|.|++++..+++........
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~---------------------------------- 72 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP---------------------------------- 72 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT----------------------------------
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC----------------------------------
Confidence 4444567789999999998887765899998876554432110000
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC----CcEEEEE---eCCCcEEEEECCCC----------cEEE
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR----SHLLLSS---SMDKTVRLWDMETK----------SCLK 589 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~----~~~L~Sg---s~DgtV~IWDl~t~----------~~i~ 589 (969)
..+.........|+++| +..|+.. ..++.|.-|.+..+ +.+.
T Consensus 73 ---------------------~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~ 131 (347)
T 3das_A 73 ---------------------GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVF 131 (347)
T ss_dssp ---------------------TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEE
T ss_pred ---------------------ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEE
Confidence 00112345678889987 2444432 23455666655441 1111
Q ss_pred -Ee--ecCCCeEEEEEecCCCCEEEEEEC-------------CCeEEEEeCCCc---------eEEEEecCCCCEEEEEE
Q 002086 590 -LF--AHNDYVTCIQFNPMDDDYFISGSL-------------DAKVRIWSISDR---------LVVDWTDLHEMVTAACY 644 (969)
Q Consensus 590 -~~--~h~~~V~sv~fsp~~~~~L~sgs~-------------Dg~I~IWDl~~~---------~~~~~~~~~~~V~sv~f 644 (969)
.+ ........|+|.| ++.++++.+. .|.|.-.+.... ..+...++ .....++|
T Consensus 132 ~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~ 209 (347)
T 3das_A 132 RGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAW 209 (347)
T ss_dssp EEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEE
T ss_pred EcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEE
Confidence 12 1223456799999 8887777543 355555555432 11222333 34567999
Q ss_pred ccCCCEEEEE-eCCCcEEEEEcCCCceeeeee---------e-eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEE
Q 002086 645 TPDGQNALIG-SHKGSCRLYSIEDSKLHQLNQ---------V-DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713 (969)
Q Consensus 645 spdg~~Lasg-s~dg~I~IwDl~~~~~~~~~~---------~-~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~I 713 (969)
+|+|.++++= +.++.-.|.-+..+...-... + ........+......++|.. + .+++..-..+.|..
T Consensus 210 dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~ 287 (347)
T 3das_A 210 DDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-G-SVWMAGLRGERLWR 287 (347)
T ss_dssp CTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-T-EEEEEESTTCSEEE
T ss_pred CCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-C-ceeeccccCCEEEE
Confidence 9988766553 233333333333322100000 0 00000011113556777764 3 45555555556655
Q ss_pred EeCCcce----EEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 714 LDGLDIV----HKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 714 wD~~~~~----~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
..+.... ...........+..+...|||.++++..
T Consensus 288 v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 288 IPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred EEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 5532211 0111112345688899999997666644
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.97 Score=48.10 Aligned_cols=184 Identities=11% Similarity=0.089 Sum_probs=98.9
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCc---EEEEe--ecCCCeEEEEEecCCCCEEEEEECC-----CeEEEEeCCCce
Q 002086 564 RSHLLLSSSMD-----KTVRLWDMETKS---CLKLF--AHNDYVTCIQFNPMDDDYFISGSLD-----AKVRIWSISDRL 628 (969)
Q Consensus 564 ~~~~L~Sgs~D-----gtV~IWDl~t~~---~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~~ 628 (969)
.+.+++.|+.+ ..+.+||..+.+ -...- .....-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 35677777754 468999998876 43332 111111222222 56677777654 358899998876
Q ss_pred EEEEecCC---CCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCc
Q 002086 629 VVDWTDLH---EMVTAACYTPDGQNALIGSHK-----GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS 700 (969)
Q Consensus 629 ~~~~~~~~---~~V~sv~fspdg~~Lasgs~d-----g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~ 700 (969)
-....... ....++.+ +++.++.|+.+ ..+.+||+.+.+........ ........+.+ ++ .
T Consensus 140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~ 208 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA------TKRSGAGVALL--ND-H 208 (301)
T ss_dssp EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS------SCCBSCEEEEE--TT-E
T ss_pred EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC------cccccceEEEE--CC-E
Confidence 44332222 11122222 66777777654 46889999887654432211 11111222333 23 6
Q ss_pred eEEEEeCC-----CcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 002086 701 EVLVTSAD-----SRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREEH 761 (969)
Q Consensus 701 ~l~sgs~D-----g~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t~ 761 (969)
+++.|+.+ ..+.+||..+..-... .......-.+++ .-++++++.|+.+ ..|.+||+.+.
T Consensus 209 i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 209 IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT-VLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE-EECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 77777664 4688999764332211 111111111222 2267788888765 35788888763
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.58 E-value=1.2 Score=47.37 Aligned_cols=185 Identities=9% Similarity=0.118 Sum_probs=98.8
Q ss_pred CCcEEEEEeCC-----CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECCC-----eEEEEeCCCceEEE
Q 002086 564 RSHLLLSSSMD-----KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDA-----KVRIWSISDRLVVD 631 (969)
Q Consensus 564 ~~~~L~Sgs~D-----gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~Dg-----~I~IWDl~~~~~~~ 631 (969)
.+.+++.|+.+ ..+.+||..+.+-...- .....-.+++.. ++.+++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 45667777654 35889999887655443 111111222222 567777777653 58889998876544
Q ss_pred EecCCCC--EEEEEEccCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 632 WTDLHEM--VTAACYTPDGQNALIGSHK-------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 632 ~~~~~~~--V~sv~fspdg~~Lasgs~d-------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
......+ -.+++. -+++.++.|+.+ ..+.+||+.+.+........ ........+.+ ++ .++
T Consensus 139 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~iy 208 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS------TRRSGAGVGVL--NN-LLY 208 (302)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS------SCCBSCEEEEE--TT-EEE
T ss_pred cCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc------cccccccEEEE--CC-EEE
Confidence 4322211 112222 256667776542 45889999887654432211 11111222223 23 677
Q ss_pred EEEeCC-----CcEEEEeCCcceEE-EEeecCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCC
Q 002086 703 LVTSAD-----SRIRILDGLDIVHK-FRGFRNTSSQISAAFNADGKYIISASEDS-----QVYVWKREEH 761 (969)
Q Consensus 703 ~sgs~D-----g~I~IwD~~~~~~~-~~~~~~~~~V~sl~fspdg~~LaSgs~Dg-----~I~IWdl~t~ 761 (969)
+.|+.+ ..+.+||..+..-. +........-..++ .-++++++.|+.++ .|.+||+.+.
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 777654 35888996643222 11111111111222 23677888887654 4888998863
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.50 E-value=12 Score=45.50 Aligned_cols=192 Identities=11% Similarity=0.155 Sum_probs=113.8
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT 633 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~ 633 (969)
..|.++....+..|..|+.+| +..||..+.+..... .....|.++... ++ .|..++.+ -|..||..+++...+.
T Consensus 63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~--~g-~lWigt~~-Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ--GD-TLWLGALN-GLYTYQLQSRKLTSFD 137 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE--TT-EEEEEETT-EEEEEETTTCCEEEEC
T ss_pred ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec--CC-cEEEEcCC-cceeEeCCCCeEEEec
Confidence 457777766667777887765 789998876543211 122357777543 34 55556665 6888998877665541
Q ss_pred c-----CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 634 D-----LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 634 ~-----~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
. ....|.++....+|.+.+ |+.. -+..|+..+.+..... ...........|.++....++ ..|.+|+.
T Consensus 138 ~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~---~~~~~~~~~~~i~~i~~d~~~-~~lWigt~- 210 (758)
T 3ott_A 138 TRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIP---LPVHSSQSNLFVNSLLEDTTR-QCVWIGTE- 210 (758)
T ss_dssp HHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEEC---CCCCTTCSSCCEEEEEEETTT-TEEEEEEE-
T ss_pred cCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEec---CCCccccccceeEEEEEECCC-CEEEEEEC-
Confidence 1 235688888888877555 5544 5778888776543211 110001123358888877655 44555553
Q ss_pred CcEEEEeCCcce-EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 709 SRIRILDGLDIV-HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 709 g~I~IwD~~~~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+.|..++..... ..+... ....|.++....+|.+.+. +. +-|.+++..+.
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAF-HNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTT 261 (758)
T ss_dssp EEEEEEETTTTEEEEEEEE-EEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTS
T ss_pred CCCeEEcCCCCeEEeccCC-CCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCC
Confidence 468888865432 222211 1234778888878776554 44 45788877653
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.44 E-value=8.4 Score=43.59 Aligned_cols=198 Identities=13% Similarity=0.140 Sum_probs=127.1
Q ss_pred EecCCcEEEEEeCCCcEEEEECCC-CcEEEEee-c----CCCeEEEEEecCCCCEEEEEE-------CCCeEEEEeCCCc
Q 002086 561 SWSRSHLLLSSSMDKTVRLWDMET-KSCLKLFA-H----NDYVTCIQFNPMDDDYFISGS-------LDAKVRIWSISDR 627 (969)
Q Consensus 561 ~fs~~~~L~Sgs~DgtV~IWDl~t-~~~i~~~~-h----~~~V~sv~fsp~~~~~L~sgs-------~Dg~I~IWDl~~~ 627 (969)
.|-..+.|+-.+ +..|+-|++.. ..+.+.|. | ...|..-..++ +.++++..+ ..|.+.+|..+.+
T Consensus 112 kWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 189 (494)
T 1bpo_A 112 KWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (494)
T ss_dssp EEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred EecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecccc
Confidence 343334443333 45799999864 35666663 2 35677777777 666655433 2477899999887
Q ss_pred eEEEEecCCCCEEEEEEccCC---CEEEEEeC---CCcEEEEEcCCC----ceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 628 LVVDWTDLHEMVTAACYTPDG---QNALIGSH---KGSCRLYSIEDS----KLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 628 ~~~~~~~~~~~V~sv~fspdg---~~Lasgs~---dg~I~IwDl~~~----~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
....+.+|...-..+.+..+. ..++.+.. .+.++|.++... ........++............++..++.
T Consensus 190 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k 269 (494)
T 1bpo_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 269 (494)
T ss_dssp CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT
T ss_pred ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc
Confidence 766666665443333332111 23333443 278999998543 11222223333333445666778888887
Q ss_pred CCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 698 NPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 698 ~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
. ..++.-+.-|.|++||+.+....+...-....|...+-.....=++.-...|.|.--.+++.
T Consensus 270 y-gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 270 H-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp T-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred C-CEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 6 68888999999999999999998888777777776666666566777778888888888764
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.36 E-value=8.8 Score=43.44 Aligned_cols=177 Identities=14% Similarity=0.177 Sum_probs=111.4
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEecC-----CCCEEEEEEcc
Q 002086 573 MDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWTDL-----HEMVTAACYTP 646 (969)
Q Consensus 573 ~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~-----~~~V~sv~fsp 646 (969)
...++.|+|+++.+.++.+.....|.-=.|-. .+.|+-.+ +..|+-|++... .+++.+.. ...|..-..++
T Consensus 84 ag~~lQiFnle~K~klks~~~~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~ 160 (494)
T 1bpo_A 84 AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA 160 (494)
T ss_dssp ETTEEEEEETTTTEEEEEEECSSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT
T ss_pred cCCeEEEEchHHhhhhcceecCCCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC
Confidence 37899999999999999998888887777764 56655554 567999999642 34444433 24577788889
Q ss_pred CCCEEEEEe-------CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC--CCceEEEEeC---CCcEEEE
Q 002086 647 DGQNALIGS-------HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS--NPSEVLVTSA---DSRIRIL 714 (969)
Q Consensus 647 dg~~Lasgs-------~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd--~~~~l~sgs~---Dg~I~Iw 714 (969)
+.++++..+ -.|.+.+|..+....... .+|......+.+.-. ...+++.+.. .+.+.|.
T Consensus 161 ~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i---------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~ 231 (494)
T 1bpo_A 161 KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII 231 (494)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEE---------CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEE
T ss_pred CCCeEEEEeecccCCcccceEEEeeccccccchh---------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEE
Confidence 999887533 246788998877654322 233322222222110 0012222222 2678888
Q ss_pred eCCcc--------eEEEEeec----CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 715 DGLDI--------VHKFRGFR----NTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 715 D~~~~--------~~~~~~~~----~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++... ......+- ...--.++..++.-..+..-+.-|.|++||++++
T Consensus 232 Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg 290 (494)
T 1bpo_A 232 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 290 (494)
T ss_dssp ECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred EcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc
Confidence 75321 11111111 1223457888888888999999999999999994
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.35 E-value=1.2 Score=47.45 Aligned_cols=185 Identities=9% Similarity=0.060 Sum_probs=98.8
Q ss_pred CCcEEEEEeCC----CcEEEEECCCCcEEEEee--cCCCeEEEEEecCCCCEEEEEECC------CeEEEEeCCCceEEE
Q 002086 564 RSHLLLSSSMD----KTVRLWDMETKSCLKLFA--HNDYVTCIQFNPMDDDYFISGSLD------AKVRIWSISDRLVVD 631 (969)
Q Consensus 564 ~~~~L~Sgs~D----gtV~IWDl~t~~~i~~~~--h~~~V~sv~fsp~~~~~L~sgs~D------g~I~IWDl~~~~~~~ 631 (969)
.+.+++.|+.+ ..+.+||..+.+-...-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 45677777754 678899999886554431 11111122222 56677777765 458999998876544
Q ss_pred EecCCCC--EEEEEEccCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCc
Q 002086 632 WTDLHEM--VTAACYTPDGQNALIGSH---------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS 700 (969)
Q Consensus 632 ~~~~~~~--V~sv~fspdg~~Lasgs~---------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~ 700 (969)
......+ -.+++. -+++.++.|+. -..+.+||+.+.+........ .....-..+.+ ++ .
T Consensus 133 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~ 202 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI------EARKNHGLVFV--KD-K 202 (306)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS------SCCBSCEEEEE--TT-E
T ss_pred CCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc------chhhcceEEEE--CC-E
Confidence 3222211 112222 25666677653 345889999888654432211 11111222222 33 5
Q ss_pred eEEEEeCC-----CcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 002086 701 EVLVTSAD-----SRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREEH 761 (969)
Q Consensus 701 ~l~sgs~D-----g~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t~ 761 (969)
+++.|+.+ ..+.+||..+..-... .......-.+++.. ++++++.|+.+ ..|.+||+.+.
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 77776643 3578888654322111 11111111122222 67788888854 45888888773
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.26 E-value=9.6 Score=43.51 Aligned_cols=34 Identities=6% Similarity=-0.029 Sum_probs=24.6
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccce
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECE 484 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~ 484 (969)
-..-++|+|.|||+++++--..+.|++++..+++
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc
Confidence 4467899999999988876544568887755443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.97 E-value=3.9 Score=44.94 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=61.3
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe------ecCCCeEEEEEecCC---CCEEEEEEC-C-----C
Q 002086 553 HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF------AHNDYVTCIQFNPMD---DDYFISGSL-D-----A 617 (969)
Q Consensus 553 H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~------~h~~~V~sv~fsp~~---~~~L~sgs~-D-----g 617 (969)
.-..-..++|.++..|+.+..+|.|++++ .++..... ........|+|+| + +..|+++.. . +
T Consensus 29 ~l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 29 GLEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CCSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEE
T ss_pred CCCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCcc
Confidence 34456799999944466667789999999 44422211 1245789999999 5 444444433 2 6
Q ss_pred eEEEEeCCCce------EEEEec----CCCCEEEEEEccCCCEEEEE
Q 002086 618 KVRIWSISDRL------VVDWTD----LHEMVTAACYTPDGQNALIG 654 (969)
Q Consensus 618 ~I~IWDl~~~~------~~~~~~----~~~~V~sv~fspdg~~Lasg 654 (969)
.|..|+...+. ++.... .......++|.|+|.++++.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 78888877531 222122 11234689999999766653
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=9 Score=42.08 Aligned_cols=100 Identities=10% Similarity=0.064 Sum_probs=62.0
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc-EEEEe----ecCCCeEEEEEecCC---CCEEEEEEC----C----
Q 002086 553 HLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS-CLKLF----AHNDYVTCIQFNPMD---DDYFISGSL----D---- 616 (969)
Q Consensus 553 H~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~-~i~~~----~h~~~V~sv~fsp~~---~~~L~sgs~----D---- 616 (969)
.-.....++|.++..|+.+..+|.|+++| ..++ .+..+ ........|+|+| + +..|+++.. +
T Consensus 27 ~l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcc
Confidence 34567899999855677777889999997 3454 22211 1235689999999 5 445544433 3
Q ss_pred CeEEEEeCCCc-------e-EEEEec--CCCCEEEEEEccCCCEEEEE
Q 002086 617 AKVRIWSISDR-------L-VVDWTD--LHEMVTAACYTPDGQNALIG 654 (969)
Q Consensus 617 g~I~IWDl~~~-------~-~~~~~~--~~~~V~sv~fspdg~~Lasg 654 (969)
..|..|+.... + ++.... .......++|.|+|.++++.
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence 56888887654 1 111111 11234679999999866663
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.05 E-value=2.6 Score=45.16 Aligned_cols=188 Identities=10% Similarity=0.061 Sum_probs=96.5
Q ss_pred EEecCCcEEEEEeC----C-------CcEEEEECCCCcEEEEeecCCC--eEEEEEecCCCCEEEEEECC--------Ce
Q 002086 560 LSWSRSHLLLSSSM----D-------KTVRLWDMETKSCLKLFAHNDY--VTCIQFNPMDDDYFISGSLD--------AK 618 (969)
Q Consensus 560 l~fs~~~~L~Sgs~----D-------gtV~IWDl~t~~~i~~~~h~~~--V~sv~fsp~~~~~L~sgs~D--------g~ 618 (969)
++...+.+++.|+. + ..+.+||..+++-...-....+ -.+++.. ++.+++.|+.+ ..
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence 33344677777773 1 1277889988765433211111 1122222 46666777632 45
Q ss_pred EEEEeCCCceEEEEecCCCC--EEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 619 VRIWSISDRLVVDWTDLHEM--VTAACYTPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 619 I~IWDl~~~~~~~~~~~~~~--V~sv~fspdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
+.+||+.+.+-........+ -.+++. .+++.++.|+. -..+.+||+.+.+........ .....-.
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p------~~r~~~~ 191 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ------TARSLFG 191 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS------SCCBSCE
T ss_pred EEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC------CchhceE
Confidence 89999988764433222211 112222 35667777765 246899999887654432211 1111122
Q ss_pred EEEEcCCCCceEEEEeCCC-----cEEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCC-------------
Q 002086 691 GFQFSPSNPSEVLVTSADS-----RIRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDS------------- 751 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg-----~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg------------- 751 (969)
.+.+ ++ .+++.|+.++ .+.+||..+..-.... ......-.+++. -++++++.|+.++
T Consensus 192 ~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~ 267 (315)
T 4asc_A 192 ATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTEL 267 (315)
T ss_dssp EEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEE
T ss_pred EEEE--CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCCcccccccc
Confidence 2223 33 6777777654 4788886543222111 111111112222 2667777777642
Q ss_pred -cEEEEEcCC
Q 002086 752 -QVYVWKREE 760 (969)
Q Consensus 752 -~I~IWdl~t 760 (969)
.|.+||+.+
T Consensus 268 ~~v~~yd~~~ 277 (315)
T 4asc_A 268 NDIWRYNEEE 277 (315)
T ss_dssp EEEEEEETTT
T ss_pred CcEEEecCCC
Confidence 367888876
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=92.86 E-value=1.1 Score=50.73 Aligned_cols=145 Identities=11% Similarity=0.187 Sum_probs=93.8
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecC-----CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce-----------
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHN-----DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL----------- 628 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~-----~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----------- 628 (969)
+..++.+- ++.||.-++......+.+... ..|..+..+| ++.+|+..+ +..|.|-.+..+.
T Consensus 32 ~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 32 GTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 44444433 477888888754434444322 2688899999 899888875 4678888886221
Q ss_pred --EEEEe-c-----CCCCEEEEEEccC---CCEEEEEeCCCcEEEEEcCCCceeeeeeeeec---ccccCCCCCeEEEEE
Q 002086 629 --VVDWT-D-----LHEMVTAACYTPD---GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ---TKKKSSTRKITGFQF 694 (969)
Q Consensus 629 --~~~~~-~-----~~~~V~sv~fspd---g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~---~~~~~h~~~It~l~f 694 (969)
+..+. + ....|..+.|+|- +..|++-..|+.|++||+......+. .+... .........|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 11111 1 2467999999994 56899999999999999986332222 11100 011233478999999
Q ss_pred cCCCCceEEEEe--CCCcEEEE
Q 002086 695 SPSNPSEVLVTS--ADSRIRIL 714 (969)
Q Consensus 695 spd~~~~l~sgs--~Dg~I~Iw 714 (969)
.+++ -.|.+.+ ..|.|+-.
T Consensus 188 g~~~-lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 SKDG-LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CTTS-SCEEEEECTTSCEEEEE
T ss_pred cCCC-cEEEEEecCCCCCEEEE
Confidence 9965 6666654 77888764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.70 E-value=2.1 Score=45.37 Aligned_cols=183 Identities=13% Similarity=0.061 Sum_probs=96.0
Q ss_pred CcEEEEEe-CC-----CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC-----CeEEEEeCCCce---
Q 002086 565 SHLLLSSS-MD-----KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD-----AKVRIWSISDRL--- 628 (969)
Q Consensus 565 ~~~L~Sgs-~D-----gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~~--- 628 (969)
+.+++.|+ .+ ..+.+||+.+.+-...- .....-.+++.. ++.+++.|+.+ ..+.+||+.+..
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 34555555 22 46889999887644432 111111222222 56777777755 458999998876
Q ss_pred EEEEecCC---CCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCc
Q 002086 629 VVDWTDLH---EMVTAACYTPDGQNALIGSHK-----GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS 700 (969)
Q Consensus 629 ~~~~~~~~---~~V~sv~fspdg~~Lasgs~d-----g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~ 700 (969)
-....... .....+.+ +++.++.|+.+ ..+.+||+.+.+........ .....-..+.+ ++ .
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~ 161 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ------TAREGAGLVVA--SG-V 161 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS------SCCBSCEEEEE--TT-E
T ss_pred eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC------CCcccceEEEE--CC-E
Confidence 33332221 11222222 56777777654 36889999887755433221 11111122222 33 6
Q ss_pred eEEEEeCC-----CcEEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 002086 701 EVLVTSAD-----SRIRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASED-----SQVYVWKREEH 761 (969)
Q Consensus 701 ~l~sgs~D-----g~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t~ 761 (969)
+++.|+.+ ..+.+||..+..-.... ......-.++. .-++++++.|+.+ ..|.+||+.+.
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 77777654 45888886543322211 11111111222 2267777787764 46888998763
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.46 E-value=3.7 Score=45.03 Aligned_cols=92 Identities=9% Similarity=0.000 Sum_probs=56.7
Q ss_pred eCCCcEEEEECCCCcEEEEee-----cCCCeEEEEEec--------CCCCEEEEEECCCeEEEEeCCCceEEEEecCCCC
Q 002086 572 SMDKTVRLWDMETKSCLKLFA-----HNDYVTCIQFNP--------MDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEM 638 (969)
Q Consensus 572 s~DgtV~IWDl~t~~~i~~~~-----h~~~V~sv~fsp--------~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~ 638 (969)
..||.|..++..+|.....+. ...++.. .-.| ..+..+++|+.+|.+...|+.+|+++..+.....
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 589999999998885554442 2222221 1000 0357889999999999999999999877665432
Q ss_pred E--------EEEEEc-----cCCCEEEEEeCCCcEEEEE
Q 002086 639 V--------TAACYT-----PDGQNALIGSHKGSCRLYS 664 (969)
Q Consensus 639 V--------~sv~fs-----pdg~~Lasgs~dg~I~IwD 664 (969)
. .|.... ..+..|+.|..+..+.+.+
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 1 111111 1235677777777777766
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.42 E-value=2 Score=46.94 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=90.5
Q ss_pred CCcEEEEEeC-C---------CcEEEEECCCCcEEEEee---cCCCeEEEEEecCCCCEEEEEECC--------------
Q 002086 564 RSHLLLSSSM-D---------KTVRLWDMETKSCLKLFA---HNDYVTCIQFNPMDDDYFISGSLD-------------- 616 (969)
Q Consensus 564 ~~~~L~Sgs~-D---------gtV~IWDl~t~~~i~~~~---h~~~V~sv~fsp~~~~~L~sgs~D-------------- 616 (969)
.+.+++.|+. + ..+.+||+.+.+-...-. ....-.+++. . ++.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhc
Confidence 3566666665 2 468899998876544322 1111122222 2 67778888765
Q ss_pred -------------------------CeEEEEeCCCceEEEEecCC--CCE-EEEEEccCCCEEEEEeC------CCcEEE
Q 002086 617 -------------------------AKVRIWSISDRLVVDWTDLH--EMV-TAACYTPDGQNALIGSH------KGSCRL 662 (969)
Q Consensus 617 -------------------------g~I~IWDl~~~~~~~~~~~~--~~V-~sv~fspdg~~Lasgs~------dg~I~I 662 (969)
..+.+||+.+.+-....... ..- .+++.. ++++++.|+. ...+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 221 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFE 221 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEE
Confidence 57999999887544332222 111 222222 5566666653 345777
Q ss_pred EEc--CCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC----------------------CcEEEEeCCc
Q 002086 663 YSI--EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD----------------------SRIRILDGLD 718 (969)
Q Consensus 663 wDl--~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D----------------------g~I~IwD~~~ 718 (969)
||+ .+.+........ . .........+.+ ++ .+++.|+.+ ..+.+||..+
T Consensus 222 ~d~d~~~~~W~~~~~~~--~--~~~~~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~ 294 (357)
T 2uvk_A 222 LDFTGNNLKWNKLAPVS--S--PDGVAGGFAGIS--ND-SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHN 294 (357)
T ss_dssp EECC---CEEEECCCSS--T--TTCCBSCEEEEE--TT-EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-
T ss_pred EEecCCCCcEEecCCCC--C--CcccccceEEEE--CC-EEEEEcCccccCCcccccccceeccccccceeeEEEEecCC
Confidence 877 444433221110 0 000011112222 33 567777632 2467888653
Q ss_pred ceE-EEEeecCCCCeEEEEEeCCCCEEEEEeCCC------cEEEEEcCCC
Q 002086 719 IVH-KFRGFRNTSSQISAAFNADGKYIISASEDS------QVYVWKREEH 761 (969)
Q Consensus 719 ~~~-~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg------~I~IWdl~t~ 761 (969)
..- .+........ ...++..++++++.|+.++ .|.+++++++
T Consensus 295 ~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 295 GKWDKSGELSQGRA-YGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp --CEEEEECSSCCB-SSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CC
T ss_pred CceeeCCCCCCCcc-cceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCc
Confidence 221 1111111111 1122334778888888653 3666788873
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=92.14 E-value=26 Score=42.41 Aligned_cols=182 Identities=9% Similarity=0.115 Sum_probs=108.4
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee-----cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE
Q 002086 556 DVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA-----HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV 630 (969)
Q Consensus 556 ~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-----h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~ 630 (969)
.|.++... +..|..++.+ -|..+|..+++...... ....|.++.... ++.+.+ |..+ -|..++..++...
T Consensus 104 ~i~~i~~~-~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~ 178 (758)
T 3ott_A 104 DVRTMALQ-GDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFE 178 (758)
T ss_dssp CEEEEEEE-TTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEE
T ss_pred eEEEEEec-CCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceE
Confidence 35555443 3456666666 58889988776554311 234688888876 555554 4544 4888898877654
Q ss_pred EEecC------CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 631 DWTDL------HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 631 ~~~~~------~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
..... ...|.++....++..|.+|+. +-+..||..+.+....... ....|.++....++ .|.+
T Consensus 179 ~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l--------~~~~i~~i~~d~~g--~lWi 247 (758)
T 3ott_A 179 GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF--------HNNSIKSLALDGNG--DLLA 247 (758)
T ss_dssp EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEE--------EEEEEEEEEECTTC--CEEE
T ss_pred EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCC--------CCCeEEEEEEcCCC--CEEE
Confidence 43221 124888888887776666764 4688899877654332111 12347788777765 5556
Q ss_pred EeCCCcEEEEeCCcce-EEEEee------cCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 705 TSADSRIRILDGLDIV-HKFRGF------RNTSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~~-~~~~~~------~~~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
|+. +-+.+++..... ..+... -....|.++....+|.+- .|+..| |.++
T Consensus 248 gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~G-l~~~ 303 (758)
T 3ott_A 248 GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGTDYG-ISLS 303 (758)
T ss_dssp EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEESSS-EEEE
T ss_pred EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCCc-cccc
Confidence 664 468888865422 222111 112357888888777644 455556 5544
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=91.99 E-value=4.7 Score=42.92 Aligned_cols=183 Identities=11% Similarity=0.071 Sum_probs=96.5
Q ss_pred CCcEEEEEeC----C-----CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC-----CeEEEEeCCCc
Q 002086 564 RSHLLLSSSM----D-----KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD-----AKVRIWSISDR 627 (969)
Q Consensus 564 ~~~~L~Sgs~----D-----gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~ 627 (969)
.+.+++.|+. + ..+.+||+.+.+-...- .....-.+++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 3556666654 2 46889999887654432 111111122222 46667776643 35889999887
Q ss_pred eEEEEecCC---CCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 628 LVVDWTDLH---EMVTAACYTPDGQNALIGSHK-----GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 628 ~~~~~~~~~---~~V~sv~fspdg~~Lasgs~d-----g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
+-....... ....++.+ ++..++.|+.+ ..+.+||+.+.+........ ........+.+ ++
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p------~~r~~~~~~~~--~~- 216 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN------TIRSGAGVCVL--HN- 216 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS------SCCBSCEEEEE--TT-
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC------CccccceEEEE--CC-
Confidence 654432222 11222222 56777777654 46899999887654432211 11111222333 33
Q ss_pred ceEEEEeCC-----CcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCC
Q 002086 700 SEVLVTSAD-----SRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREE 760 (969)
Q Consensus 700 ~~l~sgs~D-----g~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t 760 (969)
.+++.|+.+ ..+.+||.....-... .......-.+++. -++++++.|+.+ ..|.+||+.+
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence 677777654 4588999664332211 1111111112222 267777887754 3578888876
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.80 E-value=3.9 Score=43.44 Aligned_cols=181 Identities=8% Similarity=0.054 Sum_probs=96.6
Q ss_pred cEEEEEeC--CCcEEEEECCCCcEEEEe--ec-CCCeEEEEEecCCCCEEEEEECC----CeEEEEeCCCceEEEEecCC
Q 002086 566 HLLLSSSM--DKTVRLWDMETKSCLKLF--AH-NDYVTCIQFNPMDDDYFISGSLD----AKVRIWSISDRLVVDWTDLH 636 (969)
Q Consensus 566 ~~L~Sgs~--DgtV~IWDl~t~~~i~~~--~h-~~~V~sv~fsp~~~~~L~sgs~D----g~I~IWDl~~~~~~~~~~~~ 636 (969)
.+++.|+. ...+.+||..+++-...- .. ......+.+ ++.+++.|+.+ ..+.+||+.+.+-.......
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 45555654 367889999887755432 11 111222222 56677777755 66899999887654443322
Q ss_pred C---CEEEEEEccCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 637 E---MVTAACYTPDGQNALIGSHK------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 637 ~---~V~sv~fspdg~~Lasgs~d------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
. ....+.+ +++.++.|+.+ ..+.+||+.+.+......+. .....-..+.+ ++ .+++.|+.
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~iyv~GG~ 158 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML------TQRCSHGMVEA--NG-LIYVCGGS 158 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS------SCCBSCEEEEE--TT-EEEEECCE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc------CCcceeEEEEE--CC-EEEEECCC
Confidence 1 1222222 66777777765 46899999887654432211 11111122222 33 56666653
Q ss_pred ---------CCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 002086 708 ---------DSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREEH 761 (969)
Q Consensus 708 ---------Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t~ 761 (969)
-..+.+||..+..-... .......-.++... ++++++.|+.+ ..|.+||+.+.
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp ESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 34588888665332211 11111111122222 66777777654 35888888763
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.73 E-value=3.9 Score=43.32 Aligned_cols=181 Identities=11% Similarity=0.168 Sum_probs=93.8
Q ss_pred cEEEEEeCC----CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC-----CeEEEEeCCCceEEEEec
Q 002086 566 HLLLSSSMD----KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD-----AKVRIWSISDRLVVDWTD 634 (969)
Q Consensus 566 ~~L~Sgs~D----gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D-----g~I~IWDl~~~~~~~~~~ 634 (969)
.+++.|+.+ ..+.+||+.+.+-...- .....-.+++.. ++.+++.|+.+ ..+.+||..+.+-.....
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 445555533 45888998887644432 111111122222 56677777754 358899998876544433
Q ss_pred CCC---CEEEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 635 LHE---MVTAACYTPDGQNALIGSHKG-----SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 635 ~~~---~V~sv~fspdg~~Lasgs~dg-----~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
... ....+.+ ++..++.|+.++ .+.+||+.+.+........ ........+.+ ++ .+++.|+
T Consensus 95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~iyv~GG 163 (302)
T 2xn4_A 95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN------TRRSSVGVGVV--GG-LLYAVGG 163 (302)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS------SCCBSCEEEEE--TT-EEEEECC
T ss_pred CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC------CcccCceEEEE--CC-EEEEEeC
Confidence 221 1122222 567777777553 5788998887654432211 11111122222 23 5666665
Q ss_pred CC-------CcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCC
Q 002086 707 AD-------SRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDS-----QVYVWKREE 760 (969)
Q Consensus 707 ~D-------g~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg-----~I~IWdl~t 760 (969)
.+ ..+.+||.....-... .......-.+++. -++++++.|+.++ .+.+||+.+
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred CCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCC
Confidence 42 3488888654332211 1111111112222 2677788887653 588888876
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=91.32 E-value=5.3 Score=42.69 Aligned_cols=188 Identities=10% Similarity=0.117 Sum_probs=95.4
Q ss_pred EEecCCcEEEEEeC----CC-------cEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC-------CeE
Q 002086 560 LSWSRSHLLLSSSM----DK-------TVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD-------AKV 619 (969)
Q Consensus 560 l~fs~~~~L~Sgs~----Dg-------tV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D-------g~I 619 (969)
++...+.+++.|+. ++ .+.+||..+.+-...- .....-.+++.. ++.+++.|+.+ ..+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 33344677777773 11 2778898877654432 111111222222 56777777754 348
Q ss_pred EEEeCCCceEEEEecCCCCE--EEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEE
Q 002086 620 RIWSISDRLVVDWTDLHEMV--TAACYTPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITG 691 (969)
Q Consensus 620 ~IWDl~~~~~~~~~~~~~~V--~sv~fspdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~ 691 (969)
.+||+.+.+-........+. .+++. .+++.++.|+. -..+.+||+.+.+........ ........
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p------~~r~~~~~ 202 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK------TPRSMFGV 202 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS------SCCBSCEE
T ss_pred EEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC------CCcccceE
Confidence 88999887655443322221 11222 46667777764 246899999887654432211 11111122
Q ss_pred EEEcCCCCceEEEEeCC-----CcEEEEeCCcceEEE-EeecCCCCeEEEEEeCCCCEEEEEeCC--------------C
Q 002086 692 FQFSPSNPSEVLVTSAD-----SRIRILDGLDIVHKF-RGFRNTSSQISAAFNADGKYIISASED--------------S 751 (969)
Q Consensus 692 l~fspd~~~~l~sgs~D-----g~I~IwD~~~~~~~~-~~~~~~~~V~sl~fspdg~~LaSgs~D--------------g 751 (969)
+.+ ++ .+++.|+.+ ..+.+||..+..-.. ........-.+++ .-++++++.|+.+ .
T Consensus 203 ~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~ 278 (318)
T 2woz_A 203 AIH--KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVN 278 (318)
T ss_dssp EEE--TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCC
T ss_pred EEE--CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceee
Confidence 222 33 677777643 346778865432111 1111111111222 2356777777754 3
Q ss_pred cEEEEEcCC
Q 002086 752 QVYVWKREE 760 (969)
Q Consensus 752 ~I~IWdl~t 760 (969)
.|.+||+.+
T Consensus 279 ~v~~yd~~~ 287 (318)
T 2woz_A 279 DIWKYEDDK 287 (318)
T ss_dssp CEEEEETTT
T ss_pred eEEEEeCCC
Confidence 477888776
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=91.06 E-value=6.3 Score=43.40 Aligned_cols=109 Identities=12% Similarity=0.062 Sum_probs=63.0
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe-------cCCCCEEEEEEccC---CCEEEEE-e--CCCcE
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT-------DLHEMVTAACYTPD---GQNALIG-S--HKGSC 660 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-------~~~~~V~sv~fspd---g~~Lasg-s--~dg~I 660 (969)
-...+.|+|.| ++.+|++--..|.|++++..++...... ........|+|+|+ +..|.+. + .++.|
T Consensus 31 L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 45678999999 8887766655899999987665543221 22456899999995 3444443 2 34566
Q ss_pred EEEEcCCC-----ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE
Q 002086 661 RLYSIEDS-----KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 661 ~IwDl~~~-----~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg 705 (969)
.-|.+... .......+ +.............|.|.|++ .++++.
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i-~~~~p~~~~H~g~~l~fgpDG-~Lyvt~ 157 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTV-FRGIPKGVIHNGGRIAFGPDK-MLYAGT 157 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEE-EEEECCCSSCCCCCEEECTTS-CEEEEC
T ss_pred EEEEeCCCCcccccCCCcEEE-EEcCCCCCCccCccccCCCCC-CEEEEE
Confidence 66766552 11111111 110101222335678999998 444443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=91.02 E-value=44 Score=42.84 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=103.8
Q ss_pred CCCEEEEEecC-------CcEEEEEeC-CCcEEEEECCCCcEEEEeec--CCCeEEEEEecC-CCCEEEEEECCCeEEEE
Q 002086 554 LDDVLDLSWSR-------SHLLLSSSM-DKTVRLWDMETKSCLKLFAH--NDYVTCIQFNPM-DDDYFISGSLDAKVRIW 622 (969)
Q Consensus 554 ~~~I~~l~fs~-------~~~L~Sgs~-DgtV~IWDl~t~~~i~~~~h--~~~V~sv~fsp~-~~~~L~sgs~Dg~I~IW 622 (969)
...|.|+++.+ ..+++.|.. |++|+|+++.+.+.+....- .....++.+... ...+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 34688888875 368999996 99999999998777765532 335566655432 23578899999998655
Q ss_pred eC--CCceEEEE---ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCe-EEEEEcC
Q 002086 623 SI--SDRLVVDW---TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI-TGFQFSP 696 (969)
Q Consensus 623 Dl--~~~~~~~~---~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I-t~l~fsp 696 (969)
.+ .++.+... .-...++.-..+...|..-+.++.+....+|.-. +++. ...+ ....+ ....|+.
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~-~s~l--------~~~~v~~~~~F~s 702 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLV-FSNV--------NLKEVNYMCPLNS 702 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEE-EEEB--------SSSCCCEEEEECC
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceE-Eecc--------ChHHhceEeccCc
Confidence 54 44544321 2223455544455555555555556666666543 2221 1111 11122 2334543
Q ss_pred CC-CceEEEEeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 697 SN-PSEVLVTSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 697 d~-~~~l~sgs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
.. +.-++..+ ++.++|..+.+. ....+...-...+..++++|+.+.++.+.
T Consensus 703 e~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 703 DGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp SSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred ccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence 22 23344433 455888764321 11122223345678899999887766554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=90.52 E-value=6 Score=45.24 Aligned_cols=109 Identities=12% Similarity=0.151 Sum_probs=61.2
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEec---------CCCCEEEEEEccC---CCEEEEEeC-----
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTD---------LHEMVTAACYTPD---GQNALIGSH----- 656 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~---------~~~~V~sv~fspd---g~~Lasgs~----- 656 (969)
-...+.|+|.| ++.++++-...+.|++++..++....+.. ....+..|+|+|+ +..|.+...
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999 88866665444579988876554332221 2345779999995 555554432
Q ss_pred --------CCcEEEEEcCCC--ceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE
Q 002086 657 --------KGSCRLYSIEDS--KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 657 --------dg~I~IwDl~~~--~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg 705 (969)
...|.-|+.... .+.....+ +.............|+|.|++ .++++.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i-~~~~p~~~~H~~~~l~f~pDG-~Lyv~~ 161 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDL-LAGLPSSKDHQSGRLVIGPDQ-KIYYTI 161 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEE-EEEECCCSSCCEEEEEECTTS-CEEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEE-EEcCCCCCCCCCCeEeECCCC-eEEEEE
Confidence 235666665432 22111111 111111223457899999998 444443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=90.36 E-value=3.6 Score=43.86 Aligned_cols=183 Identities=9% Similarity=0.034 Sum_probs=95.9
Q ss_pred CcEEEEEeC----CCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEEC----C-----CeEEEEeCCCceE
Q 002086 565 SHLLLSSSM----DKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSL----D-----AKVRIWSISDRLV 629 (969)
Q Consensus 565 ~~~L~Sgs~----DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~----D-----g~I~IWDl~~~~~ 629 (969)
+.+++.|+. -..+.+||..+.+-...- .....-.+++.. ++.+++.|+. + ..+.+||+.+.+-
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 455666653 246889999887654432 111111122332 4667777665 2 4588999988765
Q ss_pred EEEecCC---CCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCce
Q 002086 630 VDWTDLH---EMVTAACYTPDGQNALIGSHK-----GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSE 701 (969)
Q Consensus 630 ~~~~~~~---~~V~sv~fspdg~~Lasgs~d-----g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~ 701 (969)
....... .....+.+ +++.++.|+.+ ..+.+||+.+.+......+. .....-..+.+ ++ .+
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~i 171 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML------TRRIGVGVAVL--NR-LL 171 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS------SCCBSCEEEEE--TT-EE
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC------ccccceEEEEE--CC-EE
Confidence 4433222 11222222 56677776643 46889999887654432211 11111222233 33 67
Q ss_pred EEEEeCC-----CcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEEcCCC
Q 002086 702 VLVTSAD-----SRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASED-----SQVYVWKREEH 761 (969)
Q Consensus 702 l~sgs~D-----g~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~D-----g~I~IWdl~t~ 761 (969)
++.|+.+ ..+.+||.....-... .......-.+++.. ++++++.|+.+ ..|.+||+.+.
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 7777654 4588888654322211 11111111122222 67777787765 45888998763
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.89 E-value=0.47 Score=52.29 Aligned_cols=195 Identities=8% Similarity=0.024 Sum_probs=103.1
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecC--CCeEEEEEec-CCCCEEEEE--ECCCeEEEEeCCCceEEEEecCC---
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHN--DYVTCIQFNP-MDDDYFISG--SLDAKVRIWSISDRLVVDWTDLH--- 636 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~--~~V~sv~fsp-~~~~~L~sg--s~Dg~I~IWDl~~~~~~~~~~~~--- 636 (969)
+.+++.++.||.|.-+|..+|+.+-.+... .++....-.. ..+..++.+ +.||.|..++..+|.........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 578999999999999999999999888544 3333221111 012244444 58999999999888544222211
Q ss_pred --CCEEE---EEE-c----cCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCC--CCeEEEE---EcC-CCCc
Q 002086 637 --EMVTA---ACY-T----PDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSST--RKITGFQ---FSP-SNPS 700 (969)
Q Consensus 637 --~~V~s---v~f-s----pdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~--~~It~l~---fsp-d~~~ 700 (969)
.++.. ..+ . ..+..+++|+.+|.+.-.|+.+++.......... ..+. ....|.. +.. ....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~---~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK---NGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB---CC--------------------CC
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC---cccccccccccccccccccccCCC
Confidence 11111 000 0 1456888999999999999999998765432110 0000 0000111 100 1114
Q ss_pred eEEEEeCCCcEEEEeCCcc--eEEEEeecCCCC---eE-EEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 701 EVLVTSADSRIRILDGLDI--VHKFRGFRNTSS---QI-SAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 701 ~l~sgs~Dg~I~IwD~~~~--~~~~~~~~~~~~---V~-sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
.++.+..+..+.+.+.... ...+........ +. .-.++.|+.+ +.++.||.|+-+|..+++.
T Consensus 167 ~v~ig~~~y~v~~~~~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 167 MIVIGKTIFELGIHSYDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp EEEEEEEEEECEECCTTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred eEEEecceEEEEEECCCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 5666666666666552110 001111100000 00 0001234666 4478899999999887543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.59 E-value=18 Score=38.35 Aligned_cols=181 Identities=13% Similarity=0.129 Sum_probs=93.7
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEe-ec-CCCeEEEEEecCCCCEEEEEEC----C-------CeEEEEeCCCceEEEEe
Q 002086 567 LLLSSSMDKTVRLWDMETKSCLKLF-AH-NDYVTCIQFNPMDDDYFISGSL----D-------AKVRIWSISDRLVVDWT 633 (969)
Q Consensus 567 ~L~Sgs~DgtV~IWDl~t~~~i~~~-~h-~~~V~sv~fsp~~~~~L~sgs~----D-------g~I~IWDl~~~~~~~~~ 633 (969)
+++.|+ ..+.+||..+++-...- .. ........... ++.+++.|+. + ..+.+||..+.+-....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 445555 57999999988754311 11 11222222223 6778888874 1 12788999887654433
Q ss_pred cCCCCE--EEEEEccCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 634 DLHEMV--TAACYTPDGQNALIGSHK--------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 634 ~~~~~V--~sv~fspdg~~Lasgs~d--------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
....+- .+++.. ++..++.|+.+ ..+.+||..+.+......++ .....-..+.+ ++ .+++
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p------~~r~~~~~~~~--~~-~iyv 153 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP------YVVYGHTVLSH--MD-LVYV 153 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS------SCCBSCEEEEE--TT-EEEE
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC------CcccceeEEEE--CC-EEEE
Confidence 222211 112222 56666776632 46899999887654332211 11111122222 23 5777
Q ss_pred EEeC-C-----CcEEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCC
Q 002086 704 VTSA-D-----SRIRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDS-----QVYVWKREEH 761 (969)
Q Consensus 704 sgs~-D-----g~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg-----~I~IWdl~t~ 761 (969)
.|+. + ..+.+||..+..-.... ......-.+++ .-++++++.|+.++ .+.+||+.+.
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCC
Confidence 7765 2 35888886543222111 11111111222 22677888887654 4888888763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=89.14 E-value=9.3 Score=49.42 Aligned_cols=202 Identities=13% Similarity=0.136 Sum_probs=111.7
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEECCC-CcEEEEe-ec----CCCeEEEEEecCCCCEEEEEE-------CCCeEEEEe
Q 002086 557 VLDLSWSRSHLLLSSSMDKTVRLWDMET-KSCLKLF-AH----NDYVTCIQFNPMDDDYFISGS-------LDAKVRIWS 623 (969)
Q Consensus 557 I~~l~fs~~~~L~Sgs~DgtV~IWDl~t-~~~i~~~-~h----~~~V~sv~fsp~~~~~L~sgs-------~Dg~I~IWD 623 (969)
|.-=.|-..+.|+-.+ +..|.-|++.. ..+.+.| .| ...|..-..++ +..+++..| ..|.+.+|.
T Consensus 108 VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS 185 (1630)
T 1xi4_A 108 VTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYS 185 (1630)
T ss_pred ceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeee
Confidence 4444454434433333 45699999964 3344444 22 45666667777 666555433 358899999
Q ss_pred CCCceEEEEecCCCCEEEEEEc--cC-CCEEEEEeC---CCcEEEEEcCCC----ceeeeeeeeecccccCCCCCeEEEE
Q 002086 624 ISDRLVVDWTDLHEMVTAACYT--PD-GQNALIGSH---KGSCRLYSIEDS----KLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 624 l~~~~~~~~~~~~~~V~sv~fs--pd-g~~Lasgs~---dg~I~IwDl~~~----~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
...+....+.+|......+.+. +. ...++.+.. .+.++|.++... .......+++............++.
T Consensus 186 ~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~ 265 (1630)
T 1xi4_A 186 VDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 265 (1630)
T ss_pred cccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEE
Confidence 8776544444443322222221 11 122222221 268888888543 1111111222222223344556677
Q ss_pred EcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 694 FSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.++.. ..+...+.-|.|.+||..+....+...-....|...+-.....=++.....|.|.--.+++.
T Consensus 266 vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 266 ISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred ecccc-CEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 77765 57888899999999998888777766555555554444443333455556777777777653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=88.62 E-value=2.3 Score=43.76 Aligned_cols=138 Identities=10% Similarity=-0.021 Sum_probs=77.2
Q ss_pred CCEEEEEECCCeEEEEeCCCceE------EEEecC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 607 DDYFISGSLDAKVRIWSISDRLV------VDWTDL--HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 607 ~~~L~sgs~Dg~I~IWDl~~~~~------~~~~~~--~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
+.+|++...| +|+.=....+.. ....+. -..+..++|+|+|.+.++ .+|.++-.+..+.....-...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-- 78 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-- 78 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH--
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc--
Confidence 4556666677 666555544331 122233 246779999999987777 677766666544221110000
Q ss_pred cccc-cCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--c-----eEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 679 QTKK-KSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--I-----VHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 679 ~~~~-~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~-----~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
.... ...-.....+.|.|++ .+.++ .||.|+-++..+ . .....+...-..+..|.|.|+|.+.+.. |
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--d 153 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--G 153 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--T
T ss_pred ccEecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--C
Confidence 0000 0011114678899987 44444 669998887421 0 1122222233567899999999877766 7
Q ss_pred CcEE
Q 002086 751 SQVY 754 (969)
Q Consensus 751 g~I~ 754 (969)
+.++
T Consensus 154 g~ly 157 (236)
T 1tl2_A 154 QQFY 157 (236)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 7754
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=87.66 E-value=6.4 Score=43.24 Aligned_cols=108 Identities=12% Similarity=0.160 Sum_probs=58.5
Q ss_pred CCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-E-------ecCCCCEEEEEEccC---CCEEEEEe-C-----
Q 002086 594 NDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-W-------TDLHEMVTAACYTPD---GQNALIGS-H----- 656 (969)
Q Consensus 594 ~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~-------~~~~~~V~sv~fspd---g~~Lasgs-~----- 656 (969)
-...+.|+|.| +++.|+++...|.|++++... .... + .........|+|+|+ +..|.+.. .
T Consensus 17 l~~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 17 LDHPWALAFLP-DNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp ESSEEEEEECS-TTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCcEEEEEcC-CCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 34568999999 887344556789999998543 2211 1 112345789999996 44554443 2
Q ss_pred --CCcEEEEEcCCC--ceeeeeeeeecccc--cCCCCCeEEEEEcCCCCceEEEE
Q 002086 657 --KGSCRLYSIEDS--KLHQLNQVDFQTKK--KSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 657 --dg~I~IwDl~~~--~~~~~~~~~~~~~~--~~h~~~It~l~fspd~~~~l~sg 705 (969)
...|..|++... .+.....+ +.... .........|+|.|++ .++++.
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i-~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~ 147 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTV-FRQMPKLSTGNHFGGRLVFDGKG-YLFIAL 147 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEE-EECSSCCBSSSCCCCCEEECSSS-EEEEEE
T ss_pred CceeEEEEEEECCCCCCCCceEEE-EEECCCCCCCcccCccEEECCCC-cEEEEE
Confidence 235666766543 22111111 11100 0111223569999998 444443
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=86.60 E-value=28 Score=38.30 Aligned_cols=158 Identities=10% Similarity=-0.014 Sum_probs=79.1
Q ss_pred CCEEEEEecC--CcEEEEEeCCC----cEEEEECCCCcEEEEee---------------cCCCeEEEEEecCC-CCEEEE
Q 002086 555 DDVLDLSWSR--SHLLLSSSMDK----TVRLWDMETKSCLKLFA---------------HNDYVTCIQFNPMD-DDYFIS 612 (969)
Q Consensus 555 ~~I~~l~fs~--~~~L~Sgs~Dg----tV~IWDl~t~~~i~~~~---------------h~~~V~sv~fsp~~-~~~L~s 612 (969)
..|.+|++.| ...|..+...| .|... ...++....+. ....|.+|++.|.+ ...|.+
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4588999987 55566665555 34433 22333222221 11257889998744 566666
Q ss_pred EECCCeEEEEeCCCceEEEEec-------------------CCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceee
Q 002086 613 GSLDAKVRIWSISDRLVVDWTD-------------------LHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 613 gs~Dg~I~IWDl~~~~~~~~~~-------------------~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
+...+.|...+-....-..... ....+.+|.++|. ...|+++..++.|...+-.......
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~ 213 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKP 213 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEE
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceE
Confidence 6666666555432222111110 1235789999884 4455666555544443222211111
Q ss_pred eeeeeeccc-cc----CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 673 LNQVDFQTK-KK----SSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 673 ~~~~~~~~~-~~----~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
.. ...... .. .....+.+|.+.|.++..|+++...+ |+..+
T Consensus 214 ~~-~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 214 LN-RGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp CC-TTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred CC-CCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 10 000000 00 00135889999997656777776554 44443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=86.27 E-value=19 Score=38.17 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=90.3
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEe-ec--CCCeEEEEEecCCCCEEEEEEC----CC-------eEEEEeCCCceEEEE
Q 002086 567 LLLSSSMDKTVRLWDMETKSCLKLF-AH--NDYVTCIQFNPMDDDYFISGSL----DA-------KVRIWSISDRLVVDW 632 (969)
Q Consensus 567 ~L~Sgs~DgtV~IWDl~t~~~i~~~-~h--~~~V~sv~fsp~~~~~L~sgs~----Dg-------~I~IWDl~~~~~~~~ 632 (969)
+++.|+. .+.+||..+++-...- .. ...-.+++. . ++.+++.|+. ++ .+.+||..+.+-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVT-Q-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEEC-S-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEE-E-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444443 3788999888755421 11 112223332 2 6778888873 12 277889888765443
Q ss_pred ecCCCC--EEEEEEccCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 633 TDLHEM--VTAACYTPDGQNALIGSHK-------GSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 633 ~~~~~~--V~sv~fspdg~~Lasgs~d-------g~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
.....+ -.+++.. ++..++.|+.+ ..+.+||+.+.+.......+ .....| ..+. .++ .+++
T Consensus 94 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~----~~~~--~~~-~iyv 163 (318)
T 2woz_A 94 PPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLP--IKVYGH----NVIS--HNG-MIYC 163 (318)
T ss_dssp SCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCS--SCEESC----EEEE--ETT-EEEE
T ss_pred CCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCC--Cccccc----EEEE--ECC-EEEE
Confidence 222211 1122222 56677777754 25888999887654432211 111111 1222 233 5666
Q ss_pred EEeC------CCcEEEEeCCcceEEEE-eecCCCCeEEEEEeCCCCEEEEEeCCC-----cEEEEEcCCC
Q 002086 704 VTSA------DSRIRILDGLDIVHKFR-GFRNTSSQISAAFNADGKYIISASEDS-----QVYVWKREEH 761 (969)
Q Consensus 704 sgs~------Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~fspdg~~LaSgs~Dg-----~I~IWdl~t~ 761 (969)
.|+. -..+.+||..+..-... .......-.+++. -++++++.|+.++ .+.+||+.+.
T Consensus 164 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 164 LGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp ECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred EcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 6653 23588899665332211 1111111112222 2667777776543 4678888763
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=85.40 E-value=42 Score=36.35 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=69.2
Q ss_pred CEEEEEec-CCcEEEEEeCCCcEEEEECC--CCc---------EEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 556 DVLDLSWS-RSHLLLSSSMDKTVRLWDME--TKS---------CLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 556 ~I~~l~fs-~~~~L~Sgs~DgtV~IWDl~--t~~---------~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.+..+... ..+.|+..+..|.+..+.+. .-. ....+.....|.++...+ .+.+|+.++..|.++.-.
T Consensus 147 ~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 147 ELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp CEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEEEEEETTSEEEEEE
T ss_pred EEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEE
Confidence 34444333 36778888888988888776 211 111124456777777765 567899999999999887
Q ss_pred CCC-------ceEEE---EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 002086 624 ISD-------RLVVD---WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 624 l~~-------~~~~~---~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~ 667 (969)
+.. +.-+. +....+.+..+....+...++..+.+|.+.-++...
T Consensus 226 l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 226 IEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp GGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred HHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 632 11111 112134455555444556788888888888887754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=84.35 E-value=16 Score=44.12 Aligned_cols=195 Identities=11% Similarity=0.149 Sum_probs=103.8
Q ss_pred cCCcEEEEEeCC----CcEEEEECCCCcEEEEe-e-------cC-CCeEEEEEecCCCCEEEEEECC------CeEEEEe
Q 002086 563 SRSHLLLSSSMD----KTVRLWDMETKSCLKLF-A-------HN-DYVTCIQFNPMDDDYFISGSLD------AKVRIWS 623 (969)
Q Consensus 563 s~~~~L~Sgs~D----gtV~IWDl~t~~~i~~~-~-------h~-~~V~sv~fsp~~~~~L~sgs~D------g~I~IWD 623 (969)
..+.+++.|+.+ ..+.+||..+++....- . .. ..-.++.+.. ++.+++.|+.+ ..+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 346677777753 46889998887655433 1 11 1122333321 35566777654 3588999
Q ss_pred CCCceEEEEecCCC--CEEEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 624 ISDRLVVDWTDLHE--MVTAACYTPDGQNALIGSHKG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 624 l~~~~~~~~~~~~~--~V~sv~fspdg~~Lasgs~dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
+.+..-........ .-.+++...++..++.|+.++ .+.+||+.+.......... ...........+.+.....
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g---~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD---EFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSS---GGGGSCCBSCEEEEETTTT
T ss_pred CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCC---CCCCcccceeEEEEeCCCC
Confidence 98875443322221 112333334788888887655 7999999987654332100 0011112223345555423
Q ss_pred ceEEEEeC--C-----CcEEEEeCCcce-------EEEEee-cCCCCeEEEEEeCCCCEEEEEeCC--------CcEEEE
Q 002086 700 SEVLVTSA--D-----SRIRILDGLDIV-------HKFRGF-RNTSSQISAAFNADGKYIISASED--------SQVYVW 756 (969)
Q Consensus 700 ~~l~sgs~--D-----g~I~IwD~~~~~-------~~~~~~-~~~~~V~sl~fspdg~~LaSgs~D--------g~I~IW 756 (969)
..++.|+. + ..+.+||..... ...... .....-.+++...++++++.|+.+ ..|.+|
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 67777765 2 348888854432 112111 111111233333347778888743 458888
Q ss_pred EcCCC
Q 002086 757 KREEH 761 (969)
Q Consensus 757 dl~t~ 761 (969)
|+.+.
T Consensus 632 d~~t~ 636 (695)
T 2zwa_A 632 DPLSE 636 (695)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 88773
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=81.65 E-value=48 Score=38.65 Aligned_cols=195 Identities=13% Similarity=0.144 Sum_probs=112.7
Q ss_pred CcEEEEEe-CCCcEEEEECCCCcEEEEe--ecCCCeEEEEEe--cCCCCEEEEEEC-------CCeE------------E
Q 002086 565 SHLLLSSS-MDKTVRLWDMETKSCLKLF--AHNDYVTCIQFN--PMDDDYFISGSL-------DAKV------------R 620 (969)
Q Consensus 565 ~~~L~Sgs-~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fs--p~~~~~L~sgs~-------Dg~I------------~ 620 (969)
+++|..-. ....|..-++...++-+++ .....+.++.|. | +..|+++++. ||.. .
T Consensus 142 GrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 142 GKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 45555555 5677888899988887766 567788888887 5 6678887765 2321 1
Q ss_pred EEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC---------------cEEEEEcC-------CCceeeee--ee
Q 002086 621 IWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG---------------SCRLYSIE-------DSKLHQLN--QV 676 (969)
Q Consensus 621 IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg---------------~I~IwDl~-------~~~~~~~~--~~ 676 (969)
..|..+.++............+...++|.+.++.+.+. .+.++++. .++..... .+
T Consensus 221 ~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv 300 (638)
T 3sbq_A 221 AIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKT 300 (638)
T ss_dssp EEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred EEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCe
Confidence 11222222221111122333455577888887766532 36666653 12211111 01
Q ss_pred eeccccc------------CCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE------------EEEeecCCCCe
Q 002086 677 DFQTKKK------------SSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH------------KFRGFRNTSSQ 732 (969)
Q Consensus 677 ~~~~~~~------------~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~------------~~~~~~~~~~V 732 (969)
.+..... .-.....++.++|+|...++.+-.+.++.++|..+... ...........
T Consensus 301 ~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP 380 (638)
T 3sbq_A 301 PVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP 380 (638)
T ss_dssp CEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE
T ss_pred eEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc
Confidence 1110000 11234456789999966666667889999999653211 11112223345
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 733 ISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 733 ~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
...+|.++|.-..|---|..|.-|++..
T Consensus 381 lHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 381 LHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred cEEEECCCCceEeeeeecceEEEEeccH
Confidence 6789999995555666899999999975
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=81.08 E-value=16 Score=47.22 Aligned_cols=194 Identities=13% Similarity=0.178 Sum_probs=111.7
Q ss_pred ecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEecC-----
Q 002086 562 WSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWTDL----- 635 (969)
Q Consensus 562 fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~----- 635 (969)
.+|...+++--...++.|+|+.+...++.+.....|.-=.|- +.+.|+-.+ +..|+.|++.+. .++..+..
T Consensus 73 MnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~ 149 (1630)
T 1xi4_A 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 149 (1630)
T ss_pred cCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcc
Confidence 345333333334789999999999999988877787777776 455555444 467999999642 33322222
Q ss_pred CCCEEEEEEccCCCEEEEEe-------CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEc--CCCCceEEEEe
Q 002086 636 HEMVTAACYTPDGQNALIGS-------HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFS--PSNPSEVLVTS 706 (969)
Q Consensus 636 ~~~V~sv~fspdg~~Lasgs-------~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fs--pd~~~~l~sgs 706 (969)
...|..-..+++.++++..+ -.|.+.+|.++....... .+|......+... +.....++.+.
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~i---------egha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---------EGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhh---------hHhHhhhheeccCCCCCCceEEEEEE
Confidence 24577777888888877533 357888888876543221 2222222222111 11101111111
Q ss_pred ---CCCcEEEEeCCcc---eEEE-----Eee-c---CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCC
Q 002086 707 ---ADSRIRILDGLDI---VHKF-----RGF-R---NTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTG 767 (969)
Q Consensus 707 ---~Dg~I~IwD~~~~---~~~~-----~~~-~---~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~ 767 (969)
..+.+.|.++... ...+ ..+ . ...--.++..++.-..+..-+.-|.|++||+.++.++-..
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 1256777775321 0111 000 0 1122345677777778888889999999999997655443
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=80.20 E-value=73 Score=34.81 Aligned_cols=189 Identities=7% Similarity=0.034 Sum_probs=92.6
Q ss_pred CcEEEEEeCCCcEEEEECC-CCcEEEE---eecCCCeEEEEEecCCCCEEEEEECCC----eEEEEeCCCceEEEEec--
Q 002086 565 SHLLLSSSMDKTVRLWDME-TKSCLKL---FAHNDYVTCIQFNPMDDDYFISGSLDA----KVRIWSISDRLVVDWTD-- 634 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~-t~~~i~~---~~h~~~V~sv~fsp~~~~~L~sgs~Dg----~I~IWDl~~~~~~~~~~-- 634 (969)
...|..|...| +.+++.. .+..... ......|.+|++.|.+...|.++...| .|...+ ..++......
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 45777777777 4444433 2322221 223457999999985556666665555 454432 2222111111
Q ss_pred -------------CCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeeeeeee-eccc---------ccCCCCCe
Q 002086 635 -------------LHEMVTAACYTPD--GQNALIGSHKGSCRLYSIEDSKLHQLNQVD-FQTK---------KKSSTRKI 689 (969)
Q Consensus 635 -------------~~~~V~sv~fspd--g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~-~~~~---------~~~h~~~I 689 (969)
....|.++++.|. ...|.++...+.|...+-............ .... .......+
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1124778899872 456666666666554432222221111000 0000 00123468
Q ss_pred EEEEEcCCCCceEEEEeCCCcEEEEeC-CcceEEEE-eecC----------CCCeEEEEEeCC-CCEEEEEeCCCcEEEE
Q 002086 690 TGFQFSPSNPSEVLVTSADSRIRILDG-LDIVHKFR-GFRN----------TSSQISAAFNAD-GKYIISASEDSQVYVW 756 (969)
Q Consensus 690 t~l~fspd~~~~l~sgs~Dg~I~IwD~-~~~~~~~~-~~~~----------~~~V~sl~fspd-g~~LaSgs~Dg~I~IW 756 (969)
.+|.+.|.++..|+++..++.|+..+- ...-..+. .... ...+.++.++|+ ...|..+...+ |+..
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 899999865456666665555555432 11111111 0000 124788999985 45666666444 4443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 969 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-24 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-23 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-12 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-17 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-15 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-13 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-13 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.004 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.004 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.004 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 103 bits (256), Expect = 2e-24
Identities = 59/350 (16%), Positives = 116/350 (33%), Gaps = 32/350 (9%)
Query: 410 REQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASA 469
R+ ++ + +S + G+ + + ++ H I+ + + D+R L SA
Sbjct: 19 RDARKACADATLSQITNNIDPVGRIQ-----MRTRRTLRGHLAKIYAMHWGTDSRLLVSA 73
Query: 470 GEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529
+D + +W+ + + + + +
Sbjct: 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSG--------------NYVACGGLD 118
Query: 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLK 589
+ + GH + + + +++SS D T LWD+ET
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 590 LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEM-VTAACYTPDG 648
F + D F+SG+ DA ++W + + + HE + A C+ P+G
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 649 QNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708
GS +CRL+ + +Q + IT FS S +L D
Sbjct: 239 NAFATGSDDATCRLFD------LRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDD 291
Query: 709 SRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVW 756
+ D L G + + DG + + S DS + +W
Sbjct: 292 FNCNVWDALKADRAGVLAG--HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.6 bits (179), Expect = 2e-14
Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 20/184 (10%)
Query: 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLC 501
H G + ++ + D R S D +W+V+E G+ + I+ ++C
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-AIC 233
Query: 502 NSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLS 561
+ + GS D + + E S + + +S
Sbjct: 234 FFPNGNAFATGSD----------------DATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 562 WSRS-HLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKV 619
+S+S LLL+ D +WD + H++ V+C+ D +GS D+ +
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFL 336
Query: 620 RIWS 623
+IW+
Sbjct: 337 KIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.8 bits (164), Expect = 1e-12
Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 6/127 (4%)
Query: 543 SEKPFCSFIGHLDDVLDLSWS-RSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDY---VT 598
+F GH D+ + + + + S D T RL+D+ L ++H++ +T
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 599 CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHE-MVTAACYTPDGQNALIGSHK 657
+ F+ ++G D +W H+ V+ T DG GS
Sbjct: 275 SVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 658 GSCRLYS 664
++++
Sbjct: 334 SFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.4 bits (137), Expect = 3e-09
Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 20/147 (13%)
Query: 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496
D+ Q HE I I F + A+ +D +++++ + + +
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 497 -HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLD 555
S+ S L G +V + L GH +
Sbjct: 272 GITSVSFSKSGRLLLAGYDDF---------------NCNVWDA---LKADRAGVLAGHDN 313
Query: 556 DVLDLSWSR-SHLLLSSSMDKTVRLWD 581
V L + + + S D +++W+
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.7 bits (122), Expect = 2e-07
Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 12/231 (5%)
Query: 537 ETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHN 594
+ V + + + GHL + + W S LL+S+S D + +WD T + + +
Sbjct: 38 DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS 97
Query: 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIG 654
+V + P + + S + + +
Sbjct: 98 SWVMTCAYAPSGN------YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151
Query: 655 SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRIL 714
S + + + QT + + + + D+ ++
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 715 DGLD--IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763
D + F G + S + F +G + S+D+ ++ +
Sbjct: 212 DVREGMCRQTFTG--HESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 99.0 bits (245), Expect = 4e-23
Identities = 54/329 (16%), Positives = 104/329 (31%), Gaps = 38/329 (11%)
Query: 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504
+ H + + F + SA ED I VW+ + + +G+ + +
Sbjct: 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD-- 68
Query: 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR 564
K S + + F E +
Sbjct: 69 ----------------HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 112
Query: 565 SHLLLSSSMDKTVRLWDMETKSCL-KLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623
++S+S DKT+++W+++T C+ H ++V ++ N D S S D VR+W
Sbjct: 113 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWV 171
Query: 624 I-SDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682
+ + + + +V + P+ + I GS S + D K
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231
Query: 683 ------------KSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRN 728
+ G F +L + D +R+ D + +
Sbjct: 232 WDVSTGMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNA--H 288
Query: 729 TSSQISAAFNADGKYIISASEDSQVYVWK 757
S F+ Y+++ S D V VW+
Sbjct: 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.0 bits (206), Expect = 5e-18
Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 5/226 (2%)
Query: 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLC 501
+ + H+ ++ ++ + + SA D+ I +WEVQ + G+ +
Sbjct: 92 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 151
Query: 502 NSSDK--ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLD 559
N AS + + K+ K ++ HV E + E + S
Sbjct: 152 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 211
Query: 560 LSWSRSHLLLSSSMDKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDDDYFISGSLDAK 618
S LLS S DKT+++WD+ T CL L H+++V + F+ + +S + D
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKT 270
Query: 619 VRIWSI-SDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLY 663
+R+W + R + VT+ + + GS + +++
Sbjct: 271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.2 bits (165), Expect = 7e-13
Identities = 34/240 (14%), Positives = 75/240 (31%), Gaps = 31/240 (12%)
Query: 549 SFIGHLDDVLDLSWSRS-HLLLSSSMDKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMD 606
+ GH V + + +++S+S D T+++WD ET + L H D V I F+
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 607 DDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIE 666
+ + V++ P+G + + S + +++ ++
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 667 DSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFR 724
+ + + + + + S D +R+ + + R
Sbjct: 132 TGY--------CVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELR 182
Query: 725 GFRNTSSQIS------------------AAFNADGKYIISASEDSQVYVWKREEHRNAST 766
R+ IS G +++S S D + +W T
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.6 bits (140), Expect = 1e-09
Identities = 30/190 (15%), Positives = 48/190 (25%), Gaps = 11/190 (5%)
Query: 578 RLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHE 637
+ W L H VT + F+P +S S DA +++W H
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHT 59
Query: 638 -MVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696
V + S + + Q +
Sbjct: 60 DSVQDISFDH---------SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 110
Query: 697 SNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVW 756
N ++ S D I++ + + N DG I S S D V VW
Sbjct: 111 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
Query: 757 KREEHRNAST 766
+
Sbjct: 171 VVATKECKAE 180
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWE 479
D + + AHE + ++ F A ++ + D+ + VWE
Sbjct: 275 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.6 bits (228), Expect = 2e-20
Identities = 61/329 (18%), Positives = 124/329 (37%), Gaps = 20/329 (6%)
Query: 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASS 509
H + +KFS D +LA+ G ++ V+ V + +++ + ++ + S
Sbjct: 61 HTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119
Query: 510 LDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLL 569
D + K + + + + D + L+
Sbjct: 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179
Query: 570 SSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV 629
S S D+TVR+WD+ T C + D VT + +P D Y +GSLD VR+W +
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239
Query: 630 VDWTDLHEM--------VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTK 681
V+ D V + +T DGQ+ + GS S +L++++++ ++
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299
Query: 682 KKSS----TRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQI-- 733
+ + + + N +L S D + D + +G RN+ +
Sbjct: 300 CEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358
Query: 734 --SAAFNADGKYIISASEDSQVYVWKREE 760
++ + + S D + +WK ++
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.3 bits (165), Expect = 2e-12
Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 56/210 (26%)
Query: 422 SNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQ 481
+ V+V S + + H+ S++++ F+ D + + S DR + +W +Q
Sbjct: 225 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284
Query: 482 ECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFS 541
S S+ +
Sbjct: 285 NANNKSDSKTPNSGTCE------------------------------------------- 301
Query: 542 LSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599
++IGH D VL ++ ++ +LS S D+ V WD ++ + L + H + V
Sbjct: 302 ------VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355
Query: 600 IQFNPM-----DDDYFISGSLDAKVRIWSI 624
+ + + F +GS D K RIW
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.4 bits (160), Expect = 6e-12
Identities = 47/316 (14%), Positives = 99/316 (31%), Gaps = 38/316 (12%)
Query: 502 NSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLS 561
+ LD S + P KK+ + Y+ + + + H V +
Sbjct: 13 SKPIPPFLLDLDSQSVPDALKKQT---NDYYILYNPALPREIDVELHKSLDHTSVVCCVK 69
Query: 562 WSRSHLLLSSSMDKTVRLWDMETKSCLKLF-------------------AHNDYVTCIQF 602
+S L++ +KT +++ + S + + + Y+ + F
Sbjct: 70 FSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 129
Query: 603 NPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL 662
+P + ++V+ + + + Y P G + GS + R+
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 663 YSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---- 718
+ + + ++ SP + + S D +R+ D
Sbjct: 190 WDLRTGQCSLTLSIEDGVTT---------VAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 719 ---IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTR 775
G + S S F DG+ ++S S D V +W + N S K T
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 776 NHEHFQCKDVSVAIPW 791
+ KD +++
Sbjct: 301 EVTYIGHKDFVLSVAT 316
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.6 bits (197), Expect = 8e-17
Identities = 46/350 (13%), Positives = 102/350 (29%), Gaps = 45/350 (12%)
Query: 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496
L + ++ H+ + T + S +D + VW + + G+ +
Sbjct: 2 RRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 497 HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDD 556
S + GS+ + TV + G D
Sbjct: 61 W-SSQMRDNIII--SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 557 VLDL---------------------SWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHND 595
L + ++S + D V++WD ET++CL +
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS 655
D + +SGSLD +R+W + + T + + G+
Sbjct: 178 NRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKDNILVSGN 234
Query: 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715
+ +++ I+ + Q Q + + N + V+ +S D +++ D
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSA--------VTCLQFNKNFVITSSDDGTVKLWD 286
Query: 716 GL--DIVHKFRGFRNTSSQ---ISAAFNADGKYIISASED----SQVYVW 756
+ + + S + S + +++ V
Sbjct: 287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 4e-12
Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 22/225 (9%)
Query: 545 KPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLK-LFAHNDYVTCIQFN 603
K GH D V+ + ++S S D T+++W T CL+ L H V Q
Sbjct: 7 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66
Query: 604 PMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLY 663
+ ++ T T C + + GS + R++
Sbjct: 67 DNIIISGS----TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122
Query: 664 SIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDIVH 721
IE + + + + V+ + D +++ D +H
Sbjct: 123 DIETGQCLHVLMGHVAA-----------VRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 171
Query: 722 KFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAST 766
+G N + DG +++S S D+ + VW E T
Sbjct: 172 TLQGHTNRVYSLQ----FDGIHVVSGSLDTSIRVWDVETGNCIHT 212
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (182), Expect = 4e-15
Identities = 40/297 (13%), Positives = 96/297 (32%), Gaps = 29/297 (9%)
Query: 442 HLCQEIQAHEGSIWTIK-FSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSL 500
H Q I + + D + + S D I +W+ E + G+ +
Sbjct: 3 HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62
Query: 501 CNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDL 560
+ + S+ + ++ + + + V D+
Sbjct: 63 YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122
Query: 561 SWSRS---------------------HLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTC 599
+ ++S+S D+T+++W+ T ++ N +
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL--NGHKRG 180
Query: 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGS 659
I D +SGS D +R+W I + + HE + + + G++ G
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIV-SGAYDGK 239
Query: 660 CRLYSIEDSKLHQLNQVDFQTKK-KSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715
+++ + + + + + ++ QF + +++ +S D I I D
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 1e-09
Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 20/238 (8%)
Query: 552 GHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYF 610
V L + ++S D T+++WD T C ++ H V C+Q++
Sbjct: 13 ETSKGVYCLQYD-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITG 71
Query: 611 ISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKL 670
S S + + + + + S + D
Sbjct: 72 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA-------VWDMAS 124
Query: 671 HQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRN 728
+ + + F + ++ S D I++ + + V G +
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDF-----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179
Query: 729 TSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVS 786
+ + + ++S S D+ + +W E + R + VS
Sbjct: 180 GIACLQ----YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS 233
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 4e-08
Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 14/160 (8%)
Query: 423 NHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKF-SLDARFLASAGEDRVIHVWEVQ 481
+ V SG + C+ ++ G I R + S D I +W+++
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 206
Query: 482 ECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFS 541
+ + EG+ + ++ S GK D V +
Sbjct: 207 CGACLRVLEGHEELVRCIRFDNKRIVSGAYD------------GKIKVWDLVAALDPRAP 254
Query: 542 LSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWD 581
+ + H V L + ++SSS D T+ +WD
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDDTILIWD 293
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.7 bits (179), Expect = 2e-14
Identities = 35/323 (10%), Positives = 70/323 (21%), Gaps = 15/323 (4%)
Query: 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHP--SLCNSSD 505
QA + I IK L D + V++ +L HP +
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 506 KASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRS 565
+ + K S + E + + D
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 566 HLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS 625
V+ + D + M++ L
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187
Query: 626 DRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS-------KLHQLNQVDF 678
+ +++ A + + S G + +D K
Sbjct: 188 EE----SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243
Query: 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN 738
K + + +FSP + +D I + L K + F +
Sbjct: 244 NLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWN-LQTRKKIKNFAKFNEDSVVKIA 301
Query: 739 ADGKYIISASEDSQVYVWKREEH 761
+ A+ D +
Sbjct: 302 CSDNILCLATSDDTFKTNAAIDQ 324
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.9 bits (177), Expect = 3e-14
Identities = 42/308 (13%), Positives = 92/308 (29%), Gaps = 23/308 (7%)
Query: 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASS 509
H + + S R + + G + VW++ S + S
Sbjct: 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNR------DNYIRS 102
Query: 510 LDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLL 569
P+ + + + S +
Sbjct: 103 CKLL-----PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 570 SSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV 629
S D + +WD+ ++ ++ F + D +G LD VR W + +
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217
Query: 630 VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI 689
+ D + + Y P G+ +G + + + +QL+ + +
Sbjct: 218 LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC---------V 268
Query: 690 TGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE 749
+F+ + T D+ + + +SS +S + D KYI++ S
Sbjct: 269 LSLKFAYCG-KWFVSTGKDNLLNAWR-TPYGASIFQSKESSSVLSCDISVDDKYIVTGSG 326
Query: 750 DSQVYVWK 757
D + V++
Sbjct: 327 DKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 6e-10
Identities = 28/245 (11%), Positives = 64/245 (26%), Gaps = 26/245 (10%)
Query: 446 EIQAHEGSIWTIKFSLDARFLASAGEDRVIHVW-------------EVQECEVMSMSEGN 492
+ + I + K D L GE + +W +++
Sbjct: 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 493 LTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFI- 551
+ + S C+ + A + + S D + +++
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 552 ----------GHLDDVLDLSWS-RSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCI 600
+ L + L V + + +L H V +
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271
Query: 601 QFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSC 660
+F +F+S D + W + + V + + D + + GS
Sbjct: 272 KFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330
Query: 661 RLYSI 665
+Y +
Sbjct: 331 TVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 2e-09
Identities = 37/276 (13%), Positives = 79/276 (28%), Gaps = 48/276 (17%)
Query: 551 IGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSC------LKLFAHNDYVTCIQFNP 604
+ H + V ++ S + + V++WD+ L ++Y+ + P
Sbjct: 48 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 605 MDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYS 664
D I G + + IW ++ +L A ++ + S +
Sbjct: 108 -DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 665 IEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS------------------------ 700
+ D L + +S I+
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ 226
Query: 701 ----------EVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED 750
E L +S + ++ K++ + S +S F GK+ +S +D
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286
Query: 751 SQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVS 786
+ + W G I ++ D+S
Sbjct: 287 NLLNAW------RTPYGAS-IFQSKESSSVLSCDIS 315
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD------R 627
D + + H + V + + + +G V++W IS
Sbjct: 31 DALIGPGIPRHARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPV 88
Query: 628 LVVDWTDLHEMVTAACYTPDGQNALIGSHKGSC 660
+D + + + PDG ++G +
Sbjct: 89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 69.1 bits (167), Expect = 6e-13
Identities = 30/337 (8%), Positives = 82/337 (24%), Gaps = 29/337 (8%)
Query: 449 AHEGSIWTIKFSLDARFLASAGED--RVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDK 506
I ++ D + G + +++ + + E ++ +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN--LGNVFAMGVDRNG 97
Query: 507 ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSH 566
++ + + + + + FI + + H
Sbjct: 98 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY-------GFPLKH 150
Query: 567 LLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626
+ + + ++DME + N + F+ S +
Sbjct: 151 GETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVV 209
Query: 627 RLVVDWTDLHEM--------VTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678
P + G + + + +
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN 738
+ SS + + + D V + ++ +
Sbjct: 270 IPLE-SSILIYSVPVHGE-FAAYYQGAPEKGVLLKYD----VKTRKVTEVKNNLTDLRLS 323
Query: 739 ADGKYIISASEDSQVYVW---KREEHRNASTGKRAII 772
AD K ++ +D ++Y + K E+ R T KR ++
Sbjct: 324 ADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 68.5 bits (165), Expect = 6e-13
Identities = 35/316 (11%), Positives = 84/316 (26%), Gaps = 26/316 (8%)
Query: 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCN 502
+ Q H +I + S D + L SA + I+ W++ + +H ++
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV----FPDVHATMIT 59
Query: 503 SSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSW 562
K S D++ V S + L L+
Sbjct: 60 GIK------------TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 107
Query: 563 SRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW 622
S + ++ K + ++ + + +C+ + + G
Sbjct: 108 SADGDIAVAACYKHIAIYSHGKLTE---VPISYNSSCVALSNDKQFVAVGGQDSKVHVYK 164
Query: 623 SISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682
+ T +H + + + N T
Sbjct: 165 LSGASVSEVKTIVHPAEITSVAFSNNGA-----FLVATDQSRKVIPYSVANNFELAHTNS 219
Query: 683 KSSTRKITGFQFSPSNPSEVLVTSADSRIRI--LDGLDIVHKFRGFRNTSSQISAAFNAD 740
+ + + S D+ + + ++ + S +++ +
Sbjct: 220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN 279
Query: 741 GKYIISASEDSQVYVW 756
I+SA +DS + W
Sbjct: 280 ETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.3 bits (123), Expect = 1e-07
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 562 WSRSHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDDDYFISGSLDAK 618
+ L + S+D +V +W+M S + AH ++ +S D+
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSN 291
Query: 619 VRIWSIS 625
++ W++
Sbjct: 292 IKFWNVP 298
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.1 bits (154), Expect = 3e-11
Identities = 32/253 (12%), Positives = 64/253 (25%), Gaps = 32/253 (12%)
Query: 552 GHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMET-------KSCLKLFAHN------DYVT 598
H D+ +S + +S S D +++WD + F H D +
Sbjct: 12 AHDADIFSVSAC-NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 599 CIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG 658
I+ + + + S + + I+ + K
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK----------LDLLDSDMKKH 120
Query: 659 SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD 718
S S L+ T K +T F+ + S L S ++
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180
Query: 719 IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHE 778
+ + S + G I + + V + + R + N
Sbjct: 181 MTP-------SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232
Query: 779 HFQCKDVSVAIPW 791
+ S
Sbjct: 233 SIRSVKFSPQGSL 245
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.1 bits (154), Expect = 3e-11
Identities = 42/396 (10%), Positives = 107/396 (27%), Gaps = 70/396 (17%)
Query: 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLT-PIHPSLCNSSDK 506
+AH+ I+++ F S D + VW+ + + + + + + +H S + D
Sbjct: 11 KAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 507 ASSLDGSSPNPPPEKKKKGKHSSPDYVHV-------PETVFSLSEKPFCSFIGHLDDVLD 559
+++ + S + +
Sbjct: 69 LQAIERDAFE----LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 560 LSWSRS------HLLLSSSMDKTVRLWDMET-------------------KSCLKLFAHN 594
L W S H L+++ + T +W + +
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 595 DYVTCIQFNPMDDDYFISGSLDAKVRI-------WSISDRLVVDWTDLHEMVTAACYTPD 647
+ T + + +G + V+I + + + + ++P
Sbjct: 185 QFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242
Query: 648 GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS--------TRKITGFQFSPSNP 699
G I S ++ +++ + S + + F+ S
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302
Query: 700 SEVLVTSADSRIRILD--GLDIVHKFRGFRN--TSSQISAAFNADGKYIISASEDSQVYV 755
+ D ++R D + + + + A + G + ++
Sbjct: 303 -TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 361
Query: 756 WKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPW 791
K G R+ + +E C + +I W
Sbjct: 362 KK---------GWRSGMGADLNESLCCVCLDRSIRW 388
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 35/223 (15%), Positives = 70/223 (31%), Gaps = 13/223 (5%)
Query: 431 SGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE 490
+ L + ++ S +A+ + + + E+ + E
Sbjct: 164 TLNWSPTLELQGTVESPMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFE 222
Query: 491 GNLTPIHPSLCNSSDKASS---LDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPF 547
+ I+ S S K S L + + + +V + S +
Sbjct: 223 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 282
Query: 548 CSFIGHLDDVLDLSWS-RSHLLLSSSMDKTVRLWDMETKSCLK-LFAHNDYV----TCIQ 601
H V+ LS++ L S+ D +R WD++TK + L H D + +
Sbjct: 283 LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILA 342
Query: 602 FNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACY 644
+ D + V+ R + DL+E + C
Sbjct: 343 VDE-HGDSLAEPGVF-DVKFLKKGWRSGM-GADLNESLCCVCL 382
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.7 bits (153), Expect = 4e-11
Identities = 42/331 (12%), Positives = 90/331 (27%), Gaps = 38/331 (11%)
Query: 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSS 504
E++ H G + + ++ D+ + + G DR +VW ++
Sbjct: 45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR-- 102
Query: 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR 564
P +K G S + E +
Sbjct: 103 ----------WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 152
Query: 565 SHLLLSSSMDKTVRLWDMETKS-------------------CLKLFAHNDYVTCIQFNPM 605
S LL + S D R++ K + + +V + F+
Sbjct: 153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 212
Query: 606 DDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSI 665
S D+ V + ++ V + A + + H L++
Sbjct: 213 -GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTY 271
Query: 666 EDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG 725
+ + K+SS R +T + + + + + LD +HK
Sbjct: 272 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS---LHKNSV 328
Query: 726 FRNTSSQISAAFNADGKYIISASEDSQVYVW 756
+ + + A + D + +W
Sbjct: 329 ---SQISVLSGGKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.6 bits (93), Expect = 7e-04
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF 692
+ L E ++ + D I + +Y +K Q++++ K ++TG
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL------KEHNGQVTGV 57
Query: 693 QFSPSNPSEVLVTSADSRIRILDGLDIVHKF 723
++P + + ++ D + K
Sbjct: 58 DWAPDS-NRIVTCGTDRNAYVWTLKGRTWKP 87
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.6 bits (150), Expect = 7e-11
Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 6/125 (4%)
Query: 549 SFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPMDD 607
+ GH+ V+ + +++ + DK +R++D K L L H+ V +++
Sbjct: 7 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--G 64
Query: 608 DYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNA---LIGSHKGSCRLYS 664
+SGS D VR+W I + H + +N + GS + ++
Sbjct: 65 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124
Query: 665 IEDSK 669
+
Sbjct: 125 LPKES 129
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 2e-10
Identities = 33/343 (9%), Positives = 100/343 (29%), Gaps = 37/343 (10%)
Query: 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDK 506
++ H S+ T + ++ + +D++I V++ + + G+ + +L +
Sbjct: 8 LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGG 65
Query: 507 --ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR 564
S S+ V V + F + + + +
Sbjct: 66 ILVSG------------------STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 107
Query: 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSI 624
+++ S D T+ +W + +S + + P ++ YF+ + ++
Sbjct: 108 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 167
Query: 625 SDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684
S + + ++ + I S +I D + + T +
Sbjct: 168 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 227
Query: 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG---------FRNTSSQISA 735
+ ++ + ++ S ++ + ++ +
Sbjct: 228 WDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI 287
Query: 736 AFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHE 778
I+ + ++Q ++ N +GK
Sbjct: 288 TTFYVSDNILVSGSENQFNIY------NLRSGKLVHANILKDA 324
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.7 bits (132), Expect = 1e-08
Identities = 6/68 (8%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 560 LSWSRSHLLLSSSMDKTVRLWDMETKSCLK--LFAHNDYVTCIQFNPMDDDYFISGSLDA 617
++ S +L S + ++++ + + + D + + F + D
Sbjct: 288 TTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDG 345
Query: 618 KVRIWSIS 625
+ + +
Sbjct: 346 QSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 7e-08
Identities = 44/328 (13%), Positives = 105/328 (32%), Gaps = 24/328 (7%)
Query: 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496
D ++ H+G +W +K++ ++ + + V + C N T
Sbjct: 39 DSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 98
Query: 497 HPSLCNSSDKASSLDGSSPNP-----PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFI 551
+ + + GS N P++ H + +
Sbjct: 99 CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 158
Query: 552 GHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI 611
GH+ V ++++S S D T+ +WD+ CL + + + + I
Sbjct: 159 GHMASV-RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI 217
Query: 612 SGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671
S S+D +RIW + + ++ H + + + D +
Sbjct: 218 SASMDTTIRIWDLENGELMYTLQGHTALVGLLR-----------LSDKFLVSAAADGSIR 266
Query: 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD---GLDIVHKFRGFRN 728
+ D+ K ++ + + +LV+ ++++ I + G + +
Sbjct: 267 GWDANDYSRKFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRSGKLVHANILK--D 323
Query: 729 TSSQISAAFNADGKYIISASEDSQVYVW 756
S F + + +D Q ++
Sbjct: 324 ADQIWSVNFKGKT-LVAAVEKDGQSFLE 350
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.9 bits (148), Expect = 1e-10
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 562 WSRSHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDDDYFISGSLDAK 618
W S + D T+R+WD+ T C++ + + + IS SLD
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319
Query: 619 VRIWSI 624
+ + +
Sbjct: 320 LNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 8e-07
Identities = 33/321 (10%), Positives = 80/321 (24%), Gaps = 29/321 (9%)
Query: 452 GSIWTIKFSLDARFLASA-GEDRVIHVWEVQECEVMSMSE--GNLTPIHPSLCNSSDK-- 506
+ + +A G+ + + + +V + + G+ + + ++ S K
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 507 ----ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSW 562
+ G K+ + + + D+SW
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ--------------VLAGPISDISW 123
Query: 563 S---RSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKV 619
R ++ D ++ + L + + D
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS 183
Query: 620 RIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679
++ +D + + G + + +
Sbjct: 184 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243
Query: 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFRGFRNTSSQISAAF 737
+ + F S + + AD+ IR+ D V K+ +
Sbjct: 244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 303
Query: 738 NADG-KYIISASEDSQVYVWK 757
A G IIS S D + ++
Sbjct: 304 VATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 3e-06
Identities = 35/267 (13%), Positives = 63/267 (23%), Gaps = 22/267 (8%)
Query: 541 SLSEKPFCSFIGHLDD-VLDLSWS---RSHLLLSSSMDKTVRLWDMETKSCLKLF----- 591
P F GH V + +S S L S V +W
Sbjct: 49 DSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVK 108
Query: 592 ----AHNDYVTCIQFNPMDDDY-FISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTP 646
++ I ++ + D S + H AC+
Sbjct: 109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK 168
Query: 647 DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706
+ + + + K+ S R + S V
Sbjct: 169 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR 228
Query: 707 ADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNAST 766
S G + + I A D + + D+ + VW + +T
Sbjct: 229 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW------DVTT 282
Query: 767 GKRAIITTRNHEHFQCKDVSVAIPWPG 793
K + + Q + V + G
Sbjct: 283 SK--CVQKWTLDKQQLGNQQVGVVATG 307
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.002
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 580 WDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEM- 638
E ++ + +D F + DA +R+W ++ V L +
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295
Query: 639 --VTAACYTPDGQNALI-GSHKGSCRLYSI 665
G +I S G+ Y +
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.3 bits (136), Expect = 2e-09
Identities = 25/245 (10%), Positives = 69/245 (28%), Gaps = 10/245 (4%)
Query: 388 AHSMSVKG----DKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHL 443
HS + + + + K G + + L
Sbjct: 44 DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL 103
Query: 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNS 503
I +++ + ++ + + + E +V +S+ ++ + +
Sbjct: 104 LILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 163
Query: 504 --SDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLS 561
S + S + K + + K + +
Sbjct: 164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 223
Query: 562 WSRSHLLLSSSMDKTVRLWDMETKSCL--KLFAHNDYVTCIQFNPMDDDYFISGSLDAKV 619
L+ + S+D + ++ ++ + L AH D V + + +S DA +
Sbjct: 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACI 281
Query: 620 RIWSI 624
+ W++
Sbjct: 282 KRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.9 bits (122), Expect = 1e-07
Identities = 37/318 (11%), Positives = 79/318 (24%), Gaps = 40/318 (12%)
Query: 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCN 502
+ + I H I + + L S D I W +
Sbjct: 5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS----------------MHQD 44
Query: 503 SSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSW 562
S+ SLD +S + + + + S
Sbjct: 45 HSNLIVSLD----------------NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASA 88
Query: 563 SRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIW 622
+ + D + + T +K N + + + + +V
Sbjct: 89 NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL 148
Query: 623 SISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKK 682
S + T L + +P G G LY ++ ++ +K
Sbjct: 149 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI 208
Query: 683 KSSTRKITGFQ--FSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQI-SAAFNA 739
+ + K V S D+ I I + + + + +
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268
Query: 740 DGKYIISASEDSQVYVWK 757
++S+ D+ + W
Sbjct: 269 PST-LVSSGADACIKRWN 285
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.3 bits (131), Expect = 1e-08
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 562 WSRSHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLDAKV 619
+ S+S DKT+++W++ T K + +S S + +
Sbjct: 247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFI 305
Query: 620 RIW 622
Sbjct: 306 NFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 7e-07
Identities = 23/279 (8%), Positives = 65/279 (23%), Gaps = 13/279 (4%)
Query: 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPI 496
+ +L + H K S + AS + +W+ + + + P+
Sbjct: 44 PVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT---IPV 100
Query: 497 HPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDD 556
S + ++ F
Sbjct: 101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 160
Query: 557 VLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD 616
+ ++ + + + + F D I
Sbjct: 161 R--IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 218
Query: 617 AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV 676
+ + + V ++PDG S + +++++ K+
Sbjct: 219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE----- 273
Query: 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715
+T + + + ++ SA+ I ++
Sbjct: 274 --KTIPVGTRIEDQQLGIIWT-KQALVSISANGFINFVN 309
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 55.1 bits (131), Expect = 2e-08
Identities = 16/244 (6%), Positives = 52/244 (21%), Gaps = 18/244 (7%)
Query: 445 QEIQAHEGSIWTIKFSLDARFLASAGED------------RVIHVWEVQECEVMSMSEGN 492
S+++ S D + + + + V+ +
Sbjct: 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 141
Query: 493 LTPIHPSLCNSSDKASSLDGSS------PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKP 546
P L ++D S + + V
Sbjct: 142 PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201
Query: 547 FCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMD 606
+ + ++ + D++T +
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261
Query: 607 DDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIE 666
D + ++ + + R ++ +L + G +G +++ +
Sbjct: 262 KDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321
Query: 667 DSKL 670
+
Sbjct: 322 TLEK 325
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 54.0 bits (128), Expect = 4e-08
Identities = 32/337 (9%), Positives = 75/337 (22%), Gaps = 41/337 (12%)
Query: 459 FSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDK-----ASSLDG- 512
++ +HV +V V + + D ++ G
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 513 -SSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSS 571
+ K + S V +++S + P + ++ ++
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV-----YATVNPTQRLNDHYV 118
Query: 572 SMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD 631
+ ++ K + DD + + + +
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA-GPDIYKMDVKTGKYTV 177
Query: 632 WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED--------------SKLHQLNQVD 677
L PD + L+ VD
Sbjct: 178 ALPLRNWNRKGYSAPDVL-YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236
Query: 678 FQTKKKSSTRKITGFQFSPS----NPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQI 733
+T K + + + + +R+ D K N
Sbjct: 237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ--RKLIKAANLDHTY 294
Query: 734 -SAAFNADGKYIISASEDSQVYVWKREEHRNASTGKR 769
AF+ G + + + V+ N T ++
Sbjct: 295 YCVAFDKKGDKLYLGGTFNDLAVF------NPDTLEK 325
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.3 bits (121), Expect = 3e-07
Identities = 21/240 (8%), Positives = 57/240 (23%), Gaps = 13/240 (5%)
Query: 417 QNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIH 476
+ +V+ + + D L ++ I + ++ D L G D +
Sbjct: 101 SPVRLELTHFEVQPTRVALYDAETLS-RRKAFEAPRQITMLAWARDGSKLYGLGRDLHVM 159
Query: 477 VWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVP 536
E + + + + + S P + D
Sbjct: 160 DPEAGTLVEDKPIQSWEAETYAQ-PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYR 218
Query: 537 ETVFSLSEKPFCS----FIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA 592
+ ++ + + + + + +D+E + +K
Sbjct: 219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG-AYNVLESFDLEKNASIKRVP 277
Query: 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH-----EMVTAACYTPD 647
+ + D G + + DL + + +T D
Sbjct: 278 LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.0 bits (120), Expect = 3e-07
Identities = 35/326 (10%), Positives = 79/326 (24%), Gaps = 34/326 (10%)
Query: 464 RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHP-SLCNSSDK-----ASSLDGS-SPN 516
++ + + V + ++ V + P + + S
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKT 576
+ G+ +++F + P + + R L
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES-----PVRLELTHFEVQPTR 116
Query: 577 VRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH 636
V L+D ET S K F +T + + D D V +V+ +
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGRDLHVMDPE--AGTLVEDKPIQ 173
Query: 637 EMVTAACYTPDG-QNALIGSHKGSCRLYSI----EDSKLHQLNQVDFQTKKKSSTRKITG 691
PD G + T ++
Sbjct: 174 SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233
Query: 692 FQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQI--------SAAFNADGKY 743
+ + ++ R +++ F +N S + S + DG
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST 293
Query: 744 IISASEDSQVYVWKREEHRNASTGKR 769
+ + + +A T ++
Sbjct: 294 VWLGGALGDLAAY------DAETLEK 313
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 48.8 bits (115), Expect = 2e-06
Identities = 28/306 (9%), Positives = 87/306 (28%), Gaps = 20/306 (6%)
Query: 567 LLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626
++ + L D ++K +K+ V + + Y + DA++ + +
Sbjct: 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWA 92
Query: 627 RLVVDWTDL------HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT 680
+ ++ + ++ + + + G++ ++I D + + Q+
Sbjct: 93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ--FAIMDGETLEPKQIVSTR 150
Query: 681 KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNAD 740
+ + P ++ S + I++ + ++
Sbjct: 151 -----GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA 205
Query: 741 GKYIISASEDS---QVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKG 797
++ DS ++ A + + + + + G
Sbjct: 206 APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG 265
Query: 798 EPPPTPVQTKKHAKRISSNPTSATSSPTKEGS---PAGHSRRLLPPLPKKTNKVERVPSP 854
T I ++P + K+ + G + PK ++
Sbjct: 266 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN 325
Query: 855 PEEELS 860
P+ +S
Sbjct: 326 PDARIS 331
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 46.5 bits (109), Expect = 1e-05
Identities = 35/292 (11%), Positives = 85/292 (29%), Gaps = 13/292 (4%)
Query: 580 WDME--TKSCLKLFAHNDYVTCIQFNPMDDDYF-ISGSLDAKVRIWSISDRLVVDWTDLH 636
W M +S L D + + F ++ ++ + + +V D
Sbjct: 2 WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG 61
Query: 637 EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696
V + + G+ L+ + + + ++ ++ + +S +
Sbjct: 62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV---ESSKFKGY 118
Query: 697 SNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGK-YIISASEDSQVYV 755
+ + + I+DG + K + + ++ + + I AS + ++
Sbjct: 119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 178
Query: 756 WKREEHRNASTGKRAIITTRNHEHFQCKDVSVAI-PWPGMVKGEPPPTPVQTKKHAKRIS 814
TGK ++ ++ ++ + A G K
Sbjct: 179 VN-----VKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAV 233
Query: 815 SNPTSATSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLISHDP 866
+ S + H R + K V + +SLI DP
Sbjct: 234 IDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 285
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 48.6 bits (115), Expect = 3e-06
Identities = 22/207 (10%), Positives = 60/207 (28%), Gaps = 12/207 (5%)
Query: 567 LLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSIS- 625
++ + L D T + V + + Y D KV + +
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWM 92
Query: 626 -DRLVVD----WTDLHEMVTAACYTPDGQNALI-GSHKGSCRLYSIEDSKLHQLNQ---V 676
+ V ++ + T+ + + A+ + E + ++ +
Sbjct: 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152
Query: 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH-KFRGFRNTSSQISA 735
+ ++ ++ S P ++ +I ++D D+ + K
Sbjct: 153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG 212
Query: 736 AFNADGKYIISASEDSQVYVWKREEHR 762
+ +Y I+A+ V +
Sbjct: 213 GLDGSHRYFITAANARNKLVVIDTKEG 239
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (95), Expect = 7e-04
Identities = 20/182 (10%), Positives = 54/182 (29%), Gaps = 11/182 (6%)
Query: 609 YFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDS 668
+ ++ ++ + S + D V + + G+ + G + +
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93
Query: 669 KLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT-SADSRIRILDGLDIVHKFRGFR 727
+ + K S R I + + + I+DG + K
Sbjct: 94 E----PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 149
Query: 728 NTSSQISAAFNADGKYI-ISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVS 786
+ ++ + + I AS ++ TGK ++ + + + ++S
Sbjct: 150 RGMTYDEQEYHPEPRVAAILASHYRPEFIV-----NVKETGKILLVDYTDLNNLKTTEIS 204
Query: 787 VA 788
Sbjct: 205 AE 206
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 44.9 bits (104), Expect = 3e-05
Identities = 6/75 (8%), Positives = 19/75 (25%)
Query: 570 SSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLV 629
++S + + D+ + +P +++ + V I + V
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66
Query: 630 VDWTDLHEMVTAACY 644
+
Sbjct: 67 IATVPAGSSPQGVAV 81
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 37.9 bits (86), Expect = 0.004
Identities = 23/247 (9%), Positives = 68/247 (27%), Gaps = 42/247 (17%)
Query: 558 LDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA 617
+S + + ++++ V + D T + + + +P +++ +
Sbjct: 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASS 96
Query: 618 KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK-------- 669
+ + + V + +PDG+ + ++ +K
Sbjct: 97 TLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156
Query: 670 ----------------LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRI 713
+ + T + + PS + V ++ +
Sbjct: 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYV 216
Query: 714 LDGLDIVHKFRGFRNTSSQI-----------SAAFNADGKYI-ISASEDSQVYVWKREEH 761
+ + +++I A DGK + ++ S + V V
Sbjct: 217 TNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVI----- 271
Query: 762 RNASTGK 768
+ +T
Sbjct: 272 -DTATNT 277
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 16/251 (6%), Positives = 48/251 (19%), Gaps = 24/251 (9%)
Query: 570 SSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNP---------MDDDYFISGSLDAKVR 620
+ + D E + + ++ G V
Sbjct: 23 HFAAVTQQFVIDGEAGRVIGMI-DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVE 81
Query: 621 IWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT 680
++ L +L + + G L+
Sbjct: 82 VFDPVTLLPTADIELPDAPRFL--VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139
Query: 681 KKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD------IVHKFRGFRNTSSQIS 734
K + P+ P + D + + + +
Sbjct: 140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH 199
Query: 735 AAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGM 794
A++ ++ + +++ + S+G + +
Sbjct: 200 PAYSQKAGRLVWPTYTGKIHQI------DLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 253
Query: 795 VKGEPPPTPVQ 805
V +
Sbjct: 254 VAYHRALDRIY 264
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (91), Expect = 0.001
Identities = 21/165 (12%), Positives = 43/165 (26%), Gaps = 12/165 (7%)
Query: 450 HEGSIWTIKFSLDARFLASAGEDRVIHVW-----EVQECEVMSMSEGNLTPIHPSLCNSS 504
E I +S A L IH + + +
Sbjct: 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ 252
Query: 505 DKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWS- 563
A +++ + +H + V + ++ ++ S
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTAS---RFVVVLDAKTGERLAKFEMGHEIDSINVSQ 309
Query: 564 --RSHLLLSSSMDKTVRLWDMETKSCLK-LFAHNDYVTCIQFNPM 605
+ L S+ DKT+ + D E+ L+ + I M
Sbjct: 310 DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.004
Identities = 12/121 (9%), Positives = 34/121 (28%), Gaps = 2/121 (1%)
Query: 552 GHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFI 611
+DLS + L + D + A++ + I D +
Sbjct: 215 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 274
Query: 612 SGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALI--GSHKGSCRLYSIEDSK 669
+ V + + ++ + + + D + L + + ++ E +
Sbjct: 275 HKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334
Query: 670 L 670
Sbjct: 335 E 335
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (87), Expect = 0.004
Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 7/104 (6%)
Query: 567 LLLSSSMDKTVRLWDMETKSCLKL---FAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623
+ ++S + + +W++ + L L V + +P ++ + +V +
Sbjct: 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65
Query: 624 ISD----RLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLY 663
I+ + L +T GQ +GS+
Sbjct: 66 IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 969 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.98 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.93 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.89 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.89 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.88 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.85 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.84 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.77 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.77 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.76 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.72 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.72 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.69 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.66 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.63 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.53 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.53 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.51 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.51 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.45 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.34 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.2 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.1 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.03 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.0 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.9 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.87 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.8 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.8 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.73 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.68 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.52 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.52 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.49 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.46 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.45 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.24 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.16 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.08 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.9 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.83 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.83 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.72 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.36 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.27 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.26 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.64 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.54 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.35 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.31 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.24 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.2 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 94.53 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.26 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 93.06 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 92.67 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 92.43 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 92.3 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.05 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 92.04 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 91.49 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 91.19 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.85 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.73 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.34 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 89.72 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 88.74 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 87.0 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 86.52 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 85.72 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 85.57 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 84.46 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 84.46 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 83.77 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 81.28 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 80.32 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-32 Score=293.91 Aligned_cols=286 Identities=20% Similarity=0.301 Sum_probs=234.1
Q ss_pred eeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 443 LCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 443 l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
...+|+||+++|++|+|+|++++||||+.||+|+|||+.+++.+..+.++...+..+.+.................
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~---- 84 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK---- 84 (317)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC----
T ss_pred ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccc----
Confidence 3457999999999999999999999999999999999999999988888777766655554433222111111000
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCI 600 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv 600 (969)
.......+....+.+|...+.++.|++ +..+++++.|+.+++||+.+++.+..+ .|...+.++
T Consensus 85 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (317)
T d1vyhc1 85 ---------------LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 149 (317)
T ss_dssp ---------------EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ---------------cccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceee
Confidence 001112334456678999999999999 899999999999999999999988877 799999999
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccC--------------------CCEEEEEeCCCc
Q 002086 601 QFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPD--------------------GQNALIGSHKGS 659 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspd--------------------g~~Lasgs~dg~ 659 (969)
+|++ ++.+|++++.|+.|++|++.++.... +..+...+.+++|+|+ +.++++++.|+.
T Consensus 150 ~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 228 (317)
T d1vyhc1 150 RPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228 (317)
T ss_dssp EECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred eccc-CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE
Confidence 9999 99999999999999999999887654 4566788999998874 357899999999
Q ss_pred EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 660 I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
|++||+.+++..... ..|...|.+++|+|++ .+|++++.||.|++||..+.........|...|++++|+|
T Consensus 229 i~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~ 299 (317)
T d1vyhc1 229 IKMWDVSTGMCLMTL--------VGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299 (317)
T ss_dssp EEEEETTTTEEEEEE--------ECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS
T ss_pred EEEEECCCCcEEEEE--------eCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 999999998765432 5688899999999988 7999999999999999776544444455678899999999
Q ss_pred CCCEEEEEeCCCcEEEEE
Q 002086 740 DGKYIISASEDSQVYVWK 757 (969)
Q Consensus 740 dg~~LaSgs~Dg~I~IWd 757 (969)
++++|++|+.||+|+|||
T Consensus 300 ~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 300 TAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEeCCCeEEEeC
Confidence 999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.1e-32 Score=298.73 Aligned_cols=241 Identities=20% Similarity=0.341 Sum_probs=214.3
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
..+|.+.|.+|+|+|||++|++|+.||+|+|||+......
T Consensus 93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------- 132 (337)
T d1gxra_ 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR---------------------------------------- 132 (337)
T ss_dssp CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E----------------------------------------
T ss_pred ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccc----------------------------------------
Confidence 4579999999999999999999999999999998643211
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEec
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNP 604 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp 604 (969)
....+.+|...|.++.|++ +.++++++.|+.|++||+.++++.... .|...|.+++|++
T Consensus 133 -------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 193 (337)
T d1gxra_ 133 -------------------IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp -------------------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred -------------------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1235678999999999999 789999999999999999999988776 7999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 605 MDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 605 ~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
++.++++++.|+.|++||+++++.+....+...|.+++|+|++++|++|+.++.|++||+...+.... ..
T Consensus 194 -~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---------~~ 263 (337)
T d1gxra_ 194 -DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL---------HL 263 (337)
T ss_dssp -TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE---------CC
T ss_pred -cccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccc---------cc
Confidence 89999999999999999999999999889999999999999999999999999999999998775432 56
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
|...|++++|+|++ .+|++++.|+.|++||......... ..+...|.+++|+|++++|++|+.||+|+|||+
T Consensus 264 ~~~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 264 HESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred cccccceEEECCCC-CEEEEEeCCCeEEEEECCCCCEEEE-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 88899999999998 7999999999999999776554433 446788999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-31 Score=298.65 Aligned_cols=312 Identities=18% Similarity=0.293 Sum_probs=240.0
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
.+|++.|+||+|+|||++||+|+ |++|+|||+.+++.+..+..+......
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~----------------------------- 108 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD----------------------------- 108 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------------------------
T ss_pred CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccc-----------------------------
Confidence 36999999999999999999987 999999999999888765433211100
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecC
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPM 605 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~ 605 (969)
..........+|...|++++|+| +++|++|+.||+|++||...++.+..+ +|...|.+++|++
T Consensus 109 --------------~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~- 173 (388)
T d1erja_ 109 --------------PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP- 173 (388)
T ss_dssp ------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-
T ss_pred --------------ccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccc-
Confidence 00011123457889999999999 899999999999999999999988777 7999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccC
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTP-DGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKS 684 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fsp-dg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~ 684 (969)
++..+++++.++.|++||+.+........+.....++.+.+ ++.+|++|+.||.|++||+.++......... ......
T Consensus 174 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~~ 252 (388)
T d1erja_ 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE-NESGTG 252 (388)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------CC
T ss_pred ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccc-cccccC
Confidence 89999999999999999999998887777777777777766 7889999999999999999988765543221 222356
Q ss_pred CCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce------------EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 685 STRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV------------HKFRGFRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 685 h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~------------~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
|...|.+++|+|++ .+|++++.|+.|++||..... .......|...|++++|+|++++|++|+.||.
T Consensus 253 h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~ 331 (388)
T d1erja_ 253 HKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331 (388)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred CCCCEEEEEECCCC-CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE
Confidence 88899999999988 799999999999999964321 22334456788999999999999999999999
Q ss_pred EEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcccc
Q 002086 753 VYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAG 832 (969)
Q Consensus 753 I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~ 832 (969)
|++||+.+ ++.+..+..+...+.+..+.. ...++|++.+++++
T Consensus 332 i~vwd~~~------~~~~~~l~~H~~~V~~~~~~~-------------------------------~~~~spd~~~l~s~ 374 (388)
T d1erja_ 332 VLFWDKKS------GNPLLMLQGHRNSVISVAVAN-------------------------------GSSLGPEYNVFATG 374 (388)
T ss_dssp EEEEETTT------CCEEEEEECCSSCEEEEEECS-------------------------------SCTTCTTCEEEEEE
T ss_pred EEEEECCC------CcEEEEEeCCCCCEEEEEEec-------------------------------CcccCCCCCEEEEE
Confidence 99999988 444444444444433222111 23468888888899
Q ss_pred CCCCccccCCC
Q 002086 833 HSRRLLPPLPK 843 (969)
Q Consensus 833 ~~~~~L~~~~~ 843 (969)
+.|+.+.+|..
T Consensus 375 s~Dg~I~iW~~ 385 (388)
T d1erja_ 375 SGDCKARIWKY 385 (388)
T ss_dssp ETTSEEEEEEE
T ss_pred eCCCEEEEEee
Confidence 99998888853
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-31 Score=297.39 Aligned_cols=251 Identities=25% Similarity=0.421 Sum_probs=208.4
Q ss_pred ecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCC
Q 002086 447 IQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGK 526 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 526 (969)
..+|...|++|+|+|+|++|++|+.||+|++||...++.+.
T Consensus 117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~--------------------------------------- 157 (388)
T d1erja_ 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM--------------------------------------- 157 (388)
T ss_dssp --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---------------------------------------
T ss_pred ccCCCCCEEEEEECCCCCcceeccccccccccccccccccc---------------------------------------
Confidence 45799999999999999999999999999999998776544
Q ss_pred CCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecC
Q 002086 527 HSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM 605 (969)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~ 605 (969)
.+.+|...|.++.|++ +..+++++.++.|++||+.+........+.....++.+.+.
T Consensus 158 ----------------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 215 (388)
T d1erja_ 158 ----------------------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 215 (388)
T ss_dssp ----------------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred ----------------------ccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCC
Confidence 4567999999999998 78999999999999999999999988888888888888887
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEE--------ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee-
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDW--------TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV- 676 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~--------~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~- 676 (969)
++.+|++++.||.|++||+.++..... ..|...|.+++|+|++++|++|+.||.|++||+...........
T Consensus 216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 295 (388)
T d1erja_ 216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295 (388)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence 889999999999999999998765543 24567899999999999999999999999999987654322111
Q ss_pred ---eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEE------eCCCCEEEEE
Q 002086 677 ---DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAF------NADGKYIISA 747 (969)
Q Consensus 677 ---~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~f------spdg~~LaSg 747 (969)
........|...|.+++|+|++ .+|++|+.||.|++||..+.........|...|+++++ +|++.+||||
T Consensus 296 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~ 374 (388)
T d1erja_ 296 NSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374 (388)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred cccceeeecccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEE
Confidence 1112235678899999999988 79999999999999998876665555667788988875 6789999999
Q ss_pred eCCCcEEEEEcC
Q 002086 748 SEDSQVYVWKRE 759 (969)
Q Consensus 748 s~Dg~I~IWdl~ 759 (969)
+.||+|+||+++
T Consensus 375 s~Dg~I~iW~~~ 386 (388)
T d1erja_ 375 SGDCKARIWKYK 386 (388)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCEEEEEeee
Confidence 999999999985
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-31 Score=292.39 Aligned_cols=251 Identities=14% Similarity=0.265 Sum_probs=212.0
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+.+++| .|...|+||+|+|+|++||||+ ||.|+|||+.++....
T Consensus 42 ~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~--------------------------------- 86 (337)
T d1gxra_ 42 ARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--------------------------------- 86 (337)
T ss_dssp EEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS---------------------------------
T ss_pred ceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc---------------------------------
Confidence 3556666 7999999999999999999997 8999999997543211
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCc--EEEEe-ecCCC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKS--CLKLF-AHNDY 596 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~--~i~~~-~h~~~ 596 (969)
........+|.+.|.+++|+| +++|++|+.||+|++||+.... ....+ .|...
T Consensus 87 -----------------------~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 143 (337)
T d1gxra_ 87 -----------------------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143 (337)
T ss_dssp -----------------------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC
T ss_pred -----------------------eeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccc
Confidence 001124467999999999999 7999999999999999997654 33333 78899
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE-ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW-TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~ 675 (969)
|.+++|+| ++.++++++.|+.|++||+.++++... ..+...|.+++|++++..+++++.|+.|++||+++++....
T Consensus 144 v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~-- 220 (337)
T d1gxra_ 144 CYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-- 220 (337)
T ss_dssp EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--
T ss_pred cccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecc--
Confidence 99999999 899999999999999999999876654 45678899999999999999999999999999998876543
Q ss_pred eeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 676 VDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 676 ~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
..+...|.+++|+|++ .++++++.|+.|++||...... +....|...|++++|+|+|++|++++.||.|++
T Consensus 221 -------~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~i 291 (337)
T d1gxra_ 221 -------HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp -------EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred -------cccccceEEEEEcccc-cccceecccccccccccccccc-ccccccccccceEEECCCCCEEEEEeCCCeEEE
Confidence 3467889999999988 7899999999999999776543 345667888999999999999999999999999
Q ss_pred EEcCCC
Q 002086 756 WKREEH 761 (969)
Q Consensus 756 Wdl~t~ 761 (969)
||+.++
T Consensus 292 wd~~~~ 297 (337)
T d1gxra_ 292 WRTPYG 297 (337)
T ss_dssp EETTTC
T ss_pred EECCCC
Confidence 999874
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.9e-31 Score=290.15 Aligned_cols=264 Identities=16% Similarity=0.174 Sum_probs=214.7
Q ss_pred cccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 434 SYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 434 ~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
.++++..+...+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++...
T Consensus 41 ~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~-------------------------- 94 (311)
T d1nr0a1 41 YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-------------------------- 94 (311)
T ss_dssp EEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE--------------------------
T ss_pred EEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc--------------------------
Confidence 356778888888999999999999999999999999999999999997643221
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC--CCcEEEEECCCCcEEEE
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM--DKTVRLWDMETKSCLKL 590 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~--DgtV~IWDl~t~~~i~~ 590 (969)
...+.+|.+.|.+++|++ +++|++++. +..++||++.+++....
T Consensus 95 ---------------------------------~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~ 141 (311)
T d1nr0a1 95 ---------------------------------KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN 141 (311)
T ss_dssp ---------------------------------EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC
T ss_pred ---------------------------------ccccccccCcccccccccccccccccccccccccccccccccccccc
Confidence 124678999999999999 788888875 56699999999988776
Q ss_pred e-ecCCCeEEEEEecCCCC-EEEEEECCCeEEEEeCCCceEEEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 002086 591 F-AHNDYVTCIQFNPMDDD-YFISGSLDAKVRIWSISDRLVVDWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIED 667 (969)
Q Consensus 591 ~-~h~~~V~sv~fsp~~~~-~L~sgs~Dg~I~IWDl~~~~~~~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~ 667 (969)
+ +|...|++++|+| ++. .|++|+.|+.|++||+++++..... .|...|++++|+|++++|++++.|+.|++||+.+
T Consensus 142 l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~ 220 (311)
T d1nr0a1 142 LTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 220 (311)
T ss_dssp CCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccccccccccccccc-cceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccc
Confidence 6 7999999999999 555 6889999999999999998766554 5678999999999999999999999999999998
Q ss_pred CceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecC-CCCeEEEEEeCCCCEEEE
Q 002086 668 SKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRN-TSSQISAAFNADGKYIIS 746 (969)
Q Consensus 668 ~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~-~~~V~sl~fspdg~~LaS 746 (969)
+........ ......+|...|++++|+|++ .+|++|+.|+.|+|||..+.........+ ......+.+.+++.+|++
T Consensus 221 ~~~~~~~~~-~~~~~~~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s 298 (311)
T d1nr0a1 221 GTKTGVFED-DSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 298 (311)
T ss_dssp CCEEEECBC-TTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred ccccccccc-cccccccccccccccccCCCC-CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEE
Confidence 876544332 122335788999999999988 79999999999999997765433322222 112223445556678999
Q ss_pred EeCCCcEEEEEcC
Q 002086 747 ASEDSQVYVWKRE 759 (969)
Q Consensus 747 gs~Dg~I~IWdl~ 759 (969)
++.||.|++||.+
T Consensus 299 ~s~dG~i~~wd~d 311 (311)
T d1nr0a1 299 ISANGFINFVNPE 311 (311)
T ss_dssp EETTCCEEEEETT
T ss_pred EECCCEEEEEeCC
Confidence 9999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2e-30 Score=282.41 Aligned_cols=294 Identities=20% Similarity=0.308 Sum_probs=238.0
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
++..++|+||.+.|++|+|+|++++||||+.||+|+|||+.+++.+..+..+..++..+.+.+........+........
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence 56778899999999999999999999999999999999999999999888877777766665544322221111100000
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTC 599 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~s 599 (969)
. .............+.+|...+.......+..++....|.....|+.......... .+...+..
T Consensus 125 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (340)
T d1tbga_ 125 N---------------LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189 (340)
T ss_dssp E---------------SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred c---------------ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEee
Confidence 0 0000112234456788988888888777889999999999999999887766555 67888999
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~ 678 (969)
+.+.+ ...++++++.|+.|++||+++++.+. +..|...|++++|+|++++|++|+.||.|++||+..........
T Consensus 190 ~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~--- 265 (340)
T d1tbga_ 190 LSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS--- 265 (340)
T ss_dssp EEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC---
T ss_pred ecccc-ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc---
Confidence 99998 89999999999999999999988765 45577899999999999999999999999999999877644322
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
...+...|.+++|+|++ .+|++|+.||.|++||..+.........|...|++++|+|++.+|+||+.||.|+|||
T Consensus 266 ---~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 266 ---HDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---CTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ---cccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 25567789999999988 7999999999999999877666555566788899999999999999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=2e-30 Score=291.33 Aligned_cols=249 Identities=16% Similarity=0.234 Sum_probs=204.9
Q ss_pred cccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCC
Q 002086 450 HEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSS 529 (969)
Q Consensus 450 H~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 529 (969)
+..+|+|++|+|||++||+|+.|+.|+|||+.+++...
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~------------------------------------------ 43 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ------------------------------------------ 43 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEE------------------------------------------
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEE------------------------------------------
Confidence 35789999999999999999999999999998665432
Q ss_pred CCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecC
Q 002086 530 PDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPM 605 (969)
Q Consensus 530 ~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~ 605 (969)
+..+.+|.+.|.+|+|+| +++|++|+.|++|+|||+.++.....+ +|...|++++|+|
T Consensus 44 -----------------~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p- 105 (371)
T d1k8kc_ 44 -----------------VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP- 105 (371)
T ss_dssp -----------------EEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-
T ss_pred -----------------EEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccc-
Confidence 236789999999999999 899999999999999999987755443 7889999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCceE-----EEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee----
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLV-----VDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV---- 676 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~-----~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~---- 676 (969)
++++|++|+.|++|++|++..... .....+...|.+++|+|++++|++|+.|+.|++|++...........
T Consensus 106 ~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~ 185 (371)
T d1k8kc_ 106 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185 (371)
T ss_dssp TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccccc
Confidence 999999999999999999866431 12334678899999999999999999999999999876542211100
Q ss_pred ------eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCC
Q 002086 677 ------DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASED 750 (969)
Q Consensus 677 ------~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~D 750 (969)
........|...|.+++|+|++ ..|++++.|+.|++||............+..+|.+++|+||+++|++|. |
T Consensus 186 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d 263 (371)
T d1k8kc_ 186 SKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-D 263 (371)
T ss_dssp SCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-T
T ss_pred ccccceeeeeeccCccCcEEEEEeeccc-ccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-C
Confidence 1122336788899999999988 7899999999999999877666666666778899999999998877655 7
Q ss_pred CcEEEEEcCC
Q 002086 751 SQVYVWKREE 760 (969)
Q Consensus 751 g~I~IWdl~t 760 (969)
+.+++|..+.
T Consensus 264 ~~~~~~~~~~ 273 (371)
T d1k8kc_ 264 CFPVLFTYDS 273 (371)
T ss_dssp SSCEEEEEET
T ss_pred CceEEEEeeC
Confidence 8888887765
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=7.4e-30 Score=275.65 Aligned_cols=288 Identities=16% Similarity=0.150 Sum_probs=214.5
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec-CCccCcccccccCCCCCccCCCCCCCCCc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE-GNLTPIHPSLCNSSDKASSLDGSSPNPPP 519 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~-~~~~~v~~~~~~~~~~~~~~~g~~~~~~~ 519 (969)
+.+.+.++||.++|++|+|+|||++||||+.||+|+|||+.+++.+..+. ++...+..+.+.+............
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~---- 77 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH---- 77 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTE----
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceee----
Confidence 45678899999999999999999999999999999999999999887654 4555555555544332211111000
Q ss_pred ccccCCCCCCCCcccccceeeecCC----CceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCC
Q 002086 520 EKKKKGKHSSPDYVHVPETVFSLSE----KPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHND 595 (969)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~v~~~~~----k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~ 595 (969)
..+|.... ........|...+.+++|+++..+++++.++.+++|+... ........
T Consensus 78 -----------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~---~~~~~~~~ 137 (299)
T d1nr0a2 78 -----------------LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK---LTEVPISY 137 (299)
T ss_dssp -----------------EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE---EEEEECSS
T ss_pred -----------------EEEeccCCcccccccccccccccccccccccccccccccccccccccccccc---cccccccc
Confidence 01111111 1122345678889999999954455556678999999542 33345667
Q ss_pred CeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE--EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 596 YVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV--DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 596 ~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~--~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
.+.+++|+| ++.+|++|+.||.|++||++++... ....|...|++++|+|++++|++++.++.|++||+.++.....
T Consensus 138 ~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~ 216 (299)
T d1nr0a2 138 NSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 216 (299)
T ss_dssp CEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999 9999999999999999999887654 4556788999999999999999999999999999987654322
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc--eEEEEeecCCCCeEEEEEeCCCCEEEEEeCCC
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI--VHKFRGFRNTSSQISAAFNADGKYIISASEDS 751 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~--~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg 751 (969)
. .....|...|++++|+|++ .+|++++.|+.|++||.... ........+...+....+++++.+|++|+.|+
T Consensus 217 ~-----~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~ 290 (299)
T d1nr0a2 217 T-----NSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290 (299)
T ss_dssp C-----CCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTS
T ss_pred c-----ccccccccccccccccccc-cceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCC
Confidence 1 2235688999999999988 79999999999999997643 23333333443334444556788999999999
Q ss_pred cEEEEEcC
Q 002086 752 QVYVWKRE 759 (969)
Q Consensus 752 ~I~IWdl~ 759 (969)
.|+|||+.
T Consensus 291 ~i~iWdl~ 298 (299)
T d1nr0a2 291 NIKFWNVP 298 (299)
T ss_dssp CEEEEECC
T ss_pred EEEEEecc
Confidence 99999984
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.8e-29 Score=271.76 Aligned_cols=241 Identities=19% Similarity=0.336 Sum_probs=194.2
Q ss_pred eeEecccccCE-EEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccc
Q 002086 444 CQEIQAHEGSI-WTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKK 522 (969)
Q Consensus 444 ~~~L~gH~~~I-~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~ 522 (969)
..+|+||.+.| +|++| ++++||||+.||+|+|||+.+++++.
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~----------------------------------- 47 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL----------------------------------- 47 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE-----------------------------------
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE-----------------------------------
Confidence 45699999886 56555 68899999999999999998877654
Q ss_pred cCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEee---cCCCeEE
Q 002086 523 KKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA---HNDYVTC 599 (969)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~---h~~~V~s 599 (969)
.+.+|.+.|++++|+++++|++|+.|++|++|++...++..... +...+..
T Consensus 48 --------------------------~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 101 (355)
T d1nexb2 48 --------------------------QLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 101 (355)
T ss_dssp --------------------------EEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred --------------------------EEECCCCCEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccc
Confidence 57789999999999998899999999999999999998887663 3334555
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe------------------------cCCCCEEEEEEccCCCEEEEEe
Q 002086 600 IQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT------------------------DLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 600 v~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~------------------------~~~~~V~sv~fspdg~~Lasgs 655 (969)
+.+.+ ++.++++++.|+.|++||+.+....... .+.. ....+.+++++++++.
T Consensus 102 ~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~ 178 (355)
T d1nexb2 102 IVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA--SVRTVSGHGNIVVSGS 178 (355)
T ss_dssp EEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS--CEEEEEEETTEEEEEE
T ss_pred ccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc--cccccccccceeeeec
Confidence 66777 7889999999999999999875433211 1111 2234566789999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEE
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISA 735 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl 735 (969)
.|+.|++||+.+++..... ..+...+.++.|+|.+ ..+++++.|+.|++||..+.........|...|.++
T Consensus 179 ~d~~i~~~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~ 249 (355)
T d1nexb2 179 YDNTLIVWDVAQMKCLYIL--------SGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 249 (355)
T ss_dssp TTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEE
T ss_pred ccceeeeeecccccceeee--------eccccccccccccccc-eeeecccccceEEeeecccccccccccccccccccc
Confidence 9999999999988764332 5567889999999988 799999999999999988776666666778889998
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 736 AFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 736 ~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+|+ +++|++|+.||.|++||+.+.
T Consensus 250 ~~~--~~~l~~~~~dg~i~iwd~~~~ 273 (355)
T d1nexb2 250 RLS--DKFLVSAAADGSIRGWDANDY 273 (355)
T ss_dssp EEC--SSEEEEECTTSEEEEEETTTC
T ss_pred ccc--cceeeeeeccccccccccccc
Confidence 886 479999999999999999873
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=1.3e-28 Score=270.54 Aligned_cols=242 Identities=14% Similarity=0.173 Sum_probs=202.5
Q ss_pred cccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 448 QAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 448 ~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
..+.+.+.+++++|+|+.||.++ ++.|.+||+.+++..
T Consensus 14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~----------------------------------------- 51 (311)
T d1nr0a1 14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT----------------------------------------- 51 (311)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCC-----------------------------------------
T ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCcee-----------------------------------------
Confidence 34667788999999999999986 667999999764432
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEE--EEe-ecCCCeEEEEEe
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCL--KLF-AHNDYVTCIQFN 603 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i--~~~-~h~~~V~sv~fs 603 (969)
..+.+|.+.|++++|+| +++|++|+.||+|+|||+.++... ..+ .|...|.+++|+
T Consensus 52 --------------------~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 111 (311)
T d1nr0a1 52 --------------------EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 111 (311)
T ss_dssp --------------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEEC
T ss_pred --------------------EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccc
Confidence 25678999999999999 899999999999999999987643 333 699999999999
Q ss_pred cCCCCEEEEEECC--CeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeeec
Q 002086 604 PMDDDYFISGSLD--AKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQN-ALIGSHKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 604 p~~~~~L~sgs~D--g~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~-Lasgs~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
| ++.+|++++.+ ..++||++.+++... +..|...|++++|+|++++ |++|+.||.|++||+++.+.....
T Consensus 112 ~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~----- 185 (311)
T d1nr0a1 112 S-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF----- 185 (311)
T ss_dssp T-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-----
T ss_pred c-cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccc-----
Confidence 9 89999998864 569999999876544 4557788999999999885 778999999999999987754332
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEe-------ecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRG-------FRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~-------~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
..|...|+++.|+|++ .++++++.|+.|++||.......... ..|...|++++|+|++++|++|+.||.
T Consensus 186 ---~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~ 261 (311)
T d1nr0a1 186 ---GEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 261 (311)
T ss_dssp ---CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ---ccccccccccccCccc-cccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe
Confidence 5688999999999988 79999999999999997654433221 235678999999999999999999999
Q ss_pred EEEEEcCCC
Q 002086 753 VYVWKREEH 761 (969)
Q Consensus 753 I~IWdl~t~ 761 (969)
|+|||++++
T Consensus 262 v~iwd~~t~ 270 (311)
T d1nr0a1 262 IKIWNVATL 270 (311)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 999999873
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=3.8e-28 Score=272.63 Aligned_cols=250 Identities=16% Similarity=0.227 Sum_probs=199.3
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
..++..|++|.++|++|+|+|++++|+||+.|++|+|||+.+++....
T Consensus 41 ~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~-------------------------------- 88 (371)
T d1k8kc_ 41 WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT-------------------------------- 88 (371)
T ss_dssp EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE--------------------------------
T ss_pred EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc--------------------------------
Confidence 346788999999999999999999999999999999999986654321
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-----ecC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-----AHN 594 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-----~h~ 594 (969)
..+.+|...|.+++|+| ++.|++|+.|++|++|++......... .|.
T Consensus 89 ---------------------------~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~ 141 (371)
T d1k8kc_ 89 ---------------------------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR 141 (371)
T ss_dssp ---------------------------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred ---------------------------cccccccccccccccccccccceeecccCcceeeeeecccccccccccccccc
Confidence 24557889999999999 889999999999999998766533222 588
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-------------------eEEEEecCCCCEEEEEEccCCCEEEEEe
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-------------------LVVDWTDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-------------------~~~~~~~~~~~V~sv~fspdg~~Lasgs 655 (969)
..|.+++|+| ++.+|++|+.|++|++||+... .+.....+...|.+++|+|++++|++++
T Consensus 142 ~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 220 (371)
T d1k8kc_ 142 STVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 220 (371)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred cccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc
Confidence 9999999999 9999999999999999998542 1334456778899999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe--CCcceEEEE---------
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD--GLDIVHKFR--------- 724 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD--~~~~~~~~~--------- 724 (969)
.|+.|++||+..+...... ..|..+|.+++|+|++ .+| +++.|+.+++|. .......+.
T Consensus 221 ~d~~i~iwd~~~~~~~~~~--------~~~~~~v~s~~fs~d~-~~l-a~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
T d1k8kc_ 221 HDSTVCLADADKKMAVATL--------ASETLPLLAVTFITES-SLV-AAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS 290 (371)
T ss_dssp TTTEEEEEEGGGTTEEEEE--------ECSSCCEEEEEEEETT-EEE-EEETTSSCEEEEEETTTTEEEECCCCCCC---
T ss_pred cCCcceEEeeecccceeee--------ecccccceeeeecCCC-CEE-EEEcCCceEEEEeeCCCceEEEeeeecCcccc
Confidence 9999999999987764432 5678899999999987 454 455677766654 211111100
Q ss_pred ------------------------------eecCCCCeEEEEEeCCC----CEEEEEeCCCcEEEEEcCC
Q 002086 725 ------------------------------GFRNTSSQISAAFNADG----KYIISASEDSQVYVWKREE 760 (969)
Q Consensus 725 ------------------------------~~~~~~~V~sl~fspdg----~~LaSgs~Dg~I~IWdl~t 760 (969)
...|...|+++++.+.+ ..|+|++.||.|+|||+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 291 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp -----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 01256679999998754 4689999999999999976
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.2e-27 Score=255.74 Aligned_cols=286 Identities=18% Similarity=0.320 Sum_probs=228.1
Q ss_pred hhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchH
Q 002086 331 FEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQR 410 (969)
Q Consensus 331 ~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~ 410 (969)
...+.||+..|++|++..+...+++++.|..+..|.... .+....++...+.+..+.++++...+...
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~-----~~~~~~~~~h~~~V~~~~~~~~~~~~~~~------- 77 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-----GDFERTLKGHTDSVQDISFDHSGKLLASC------- 77 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT-----CCCCEEECCCSSCEEEEEECTTSSEEEEE-------
T ss_pred cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CCEEEEEeCCCCcEEEEeeeccccccccc-------
Confidence 356789999999999877778899999999887776433 22222333334445555555444332111
Q ss_pred HHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeec
Q 002086 411 EQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSE 490 (969)
Q Consensus 411 ~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~ 490 (969)
...... ..++....+....+.+|...+.++.|++++.+|++++.|+.+++||+.+++.+.
T Consensus 78 --------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--- 137 (317)
T d1vyhc1 78 --------SADMTI---------KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK--- 137 (317)
T ss_dssp --------ETTSCC---------CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE---
T ss_pred --------cccccc---------ccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeee---
Confidence 111111 223444555667788999999999999999999999999999999998765543
Q ss_pred CCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEE
Q 002086 491 GNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLL 569 (969)
Q Consensus 491 ~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~ 569 (969)
.+.+|...+.+++|++ +.+|+
T Consensus 138 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~l~ 159 (317)
T d1vyhc1 138 ----------------------------------------------------------TFTGHREWVRMVRPNQDGTLIA 159 (317)
T ss_dssp ----------------------------------------------------------EEECCSSCEEEEEECTTSSEEE
T ss_pred ----------------------------------------------------------EEccCCCcceeeecccCCCEEE
Confidence 5667899999999999 89999
Q ss_pred EEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecC-------------------CCCEEEEEECCCeEEEEeCCCceE
Q 002086 570 SSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPM-------------------DDDYFISGSLDAKVRIWSISDRLV 629 (969)
Q Consensus 570 Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~-------------------~~~~L~sgs~Dg~I~IWDl~~~~~ 629 (969)
+++.|+.|++|++.+++.+..+ .|...+.++.|+|. .+.++++++.|+.|++||+.+++.
T Consensus 160 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 239 (317)
T d1vyhc1 160 SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 239 (317)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred EEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcE
Confidence 9999999999999999988877 78999999999872 245799999999999999999876
Q ss_pred EE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 630 VD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 630 ~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
+. +..|...|.+++|+|++++|++|+.||.|+|||+.+++..... .+|...|++++|+|++ .+|++++.|
T Consensus 240 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~h~~~V~~~~~s~~~-~~l~s~s~D 310 (317)
T d1vyhc1 240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL--------NAHEHFVTSLDFHKTA-PYVVTGSVD 310 (317)
T ss_dssp EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE--------ECCSSCEEEEEECSSS-SCEEEEETT
T ss_pred EEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE--------cCCCCCEEEEEEcCCC-CEEEEEeCC
Confidence 54 5567889999999999999999999999999999988765432 5688999999999988 789999999
Q ss_pred CcEEEEe
Q 002086 709 SRIRILD 715 (969)
Q Consensus 709 g~I~IwD 715 (969)
++|+|||
T Consensus 311 g~i~iWd 317 (317)
T d1vyhc1 311 QTVKVWE 317 (317)
T ss_dssp SEEEEEC
T ss_pred CeEEEeC
Confidence 9999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.9e-26 Score=249.63 Aligned_cols=244 Identities=20% Similarity=0.380 Sum_probs=194.5
Q ss_pred cccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 438 LSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 438 l~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
...++..+.|+||++.|.+ +++++|++|||||.||+|+|||+.+++++.
T Consensus 3 ~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~------------------------------ 51 (342)
T d2ovrb2 3 RGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR------------------------------ 51 (342)
T ss_dssp HSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE------------------------------
T ss_pred CCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE------------------------------
Confidence 4456778889999999865 467789999999999999999998876654
Q ss_pred CcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCC
Q 002086 518 PPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDY 596 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~ 596 (969)
.+.+|.+.|.+++|++ ++|++|+.|+++++|+.......... .+...
T Consensus 52 -------------------------------~~~~h~~~V~~v~~~~-~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~ 99 (342)
T d2ovrb2 52 -------------------------------TLVGHTGGVWSSQMRD-NIIISGSTDRTLKVWNAETGECIHTLYGHTST 99 (342)
T ss_dssp -------------------------------ECCCCSSCEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred -------------------------------EEeCCCCCEEEEEeCC-Cccccceecccccccccccccceeccccccee
Confidence 5668999999999987 69999999999999999988877665 44555
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQV 676 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~ 676 (969)
+....+ ....++.+..|+.+.+|+..+++............. .+.+....+++++.++.|++||+.........
T Consensus 100 ~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-- 173 (342)
T d2ovrb2 100 VRCMHL---HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR-CVQYDGRRVVSGAYDFMVKVWDPETETCLHTL-- 173 (342)
T ss_dssp EEEEEE---ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE-EEEECSSCEEEEETTSCEEEEEGGGTEEEEEE--
T ss_pred Eeeeec---ccccccccccceeEEEeecccccceeeeecccccce-eeccccceeeeecCCCeEEEeecccceeeEEE--
Confidence 555555 357888999999999999999887666555443333 34456678999999999999999887654332
Q ss_pred eecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 677 DFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 677 ~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
..|...+..+.+. + .++++++.|+.|++||............+...+.+++++ +++|++|+.||.|++|
T Consensus 174 ------~~~~~~~~~~~~~--~-~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iw 242 (342)
T d2ovrb2 174 ------QGHTNRVYSLQFD--G-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIW 242 (342)
T ss_dssp ------CCCSSCEEEEEEC--S-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred ------cCcccccccccCC--C-CEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEE
Confidence 4566666666664 3 689999999999999988766666666677778777665 5699999999999999
Q ss_pred EcCCC
Q 002086 757 KREEH 761 (969)
Q Consensus 757 dl~t~ 761 (969)
|+...
T Consensus 243 d~~~~ 247 (342)
T d2ovrb2 243 DIKTG 247 (342)
T ss_dssp ETTTC
T ss_pred ecccc
Confidence 99873
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=7.1e-27 Score=254.01 Aligned_cols=243 Identities=17% Similarity=0.285 Sum_probs=184.4
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEE----EeecCCccCcccccccCCCCCccCCCCCCCC
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVM----SMSEGNLTPIHPSLCNSSDKASSLDGSSPNP 517 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l----~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~ 517 (969)
+.+..+.+|.+.|++++|+|++++|++|+.|+.|++|+....... ..+.++..................
T Consensus 88 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 160 (340)
T d1tbga_ 88 NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS------- 160 (340)
T ss_dssp EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEE-------
T ss_pred eeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccccccccc-------
Confidence 344557789999999999999999999999999999997654321 122221111110000000000000
Q ss_pred CcccccCCCCCCCCcccccce-eeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecC
Q 002086 518 PPEKKKKGKHSSPDYVHVPET-VFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHN 594 (969)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~-v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~ 594 (969)
....... ..............+...+....+.+ ..++++|+.|+.|++||+.+++++..+ +|.
T Consensus 161 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~ 226 (340)
T d1tbga_ 161 --------------SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226 (340)
T ss_dssp --------------ETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCS
T ss_pred --------------cccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCC
Confidence 0000000 11112233345567788899999988 889999999999999999999999887 799
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe---cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT---DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~---~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
..|++++|+| ++.+|++|+.||.|++||+......... .+...|.+++|+|++++|++|+.||.|++||+.+++..
T Consensus 227 ~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 305 (340)
T d1tbga_ 227 SDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305 (340)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred CCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEE
Confidence 9999999999 9999999999999999999988766544 34567999999999999999999999999999988765
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
... .+|...|++++|+|++ .+|++|+.||.|+|||
T Consensus 306 ~~~--------~~H~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 306 GVL--------AGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEE--------CCCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred EEE--------cCCCCCEEEEEEeCCC-CEEEEEccCCEEEEeC
Confidence 432 6788999999999988 7899999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.9e-26 Score=254.15 Aligned_cols=258 Identities=15% Similarity=0.163 Sum_probs=194.3
Q ss_pred eeeeEecccc-cCEEEEEEeC--CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCC
Q 002086 442 HLCQEIQAHE-GSIWTIKFSL--DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPP 518 (969)
Q Consensus 442 ~l~~~L~gH~-~~I~~l~fSp--Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~ 518 (969)
....++.+|. ..|++++|+| +|++||||+.||+|+|||+..++......
T Consensus 53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~---------------------------- 104 (325)
T d1pgua1 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE---------------------------- 104 (325)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE----------------------------
T ss_pred cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeee----------------------------
Confidence 3456678885 6799999998 67899999999999999987543321111
Q ss_pred cccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe--CCCcEEEEECCCCcEEEEe-ecC
Q 002086 519 PEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS--MDKTVRLWDMETKSCLKLF-AHN 594 (969)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs--~DgtV~IWDl~t~~~i~~~-~h~ 594 (969)
......+..|.++|.+++|++ +.+|++++ .++.+++|++.+++++..+ +|.
T Consensus 105 -------------------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 159 (325)
T d1pgua1 105 -------------------------VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS 159 (325)
T ss_dssp -------------------------EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred -------------------------cccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence 011124567999999999999 77777765 4778999999999998887 799
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe----cCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCc
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT----DLHEMVTAACYTPD-GQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~----~~~~~V~sv~fspd-g~~Lasgs~dg~I~IwDl~~~~ 669 (969)
..|.+++|+|....++++++.|+.|++||+...+..... .+...|.+++|+|+ +.+|++++.||.|++||+++++
T Consensus 160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~ 239 (325)
T d1pgua1 160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 239 (325)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred cccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc
Confidence 999999999944456889999999999999887655432 34577999999996 6889999999999999999887
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeCC-CCEEEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNAD-GKYIIS 746 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fspd-g~~LaS 746 (969)
...... .....+...+.++.| |++ .+|++++.|+.|+|||+.. ....+..+.+...+..+++.+. +.+|++
T Consensus 240 ~~~~l~----~~~~~v~~~~~s~~~-~dg-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 313 (325)
T d1pgua1 240 FLKYIE----DDQEPVQGGIFALSW-LDS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313 (325)
T ss_dssp EEEECC----BTTBCCCSCEEEEEE-SSS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred cccccc----ccccccccceeeeec-cCC-CEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEE
Confidence 654321 111222333445555 445 6899999999999999765 4455555655555555544432 358999
Q ss_pred EeCCCcEEEEEc
Q 002086 747 ASEDSQVYVWKR 758 (969)
Q Consensus 747 gs~Dg~I~IWdl 758 (969)
++.||.|+|||+
T Consensus 314 ~s~dg~i~vwdl 325 (325)
T d1pgua1 314 LSLDGTLNFYEL 325 (325)
T ss_dssp EETTSCEEEEET
T ss_pred EECCCEEEEEEC
Confidence 999999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.8e-26 Score=246.08 Aligned_cols=271 Identities=15% Similarity=0.131 Sum_probs=198.1
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
.+++++|+||.++|++|+|+| |+||+.||+|++||+.++. .++...+..+.+........ +..
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~~~~s--~s~------ 65 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSS--ISW------ 65 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTTCCEE--EET------
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCCeEEE--Eee------
Confidence 467889999999999999987 9999999999999998653 23333332222221111000 000
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEE
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCI 600 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv 600 (969)
... ..+|.. ....+...+.++.+.++..++..+.++.+.+|+..+++.+..+.+...+.++
T Consensus 66 ---------D~~----v~~w~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (287)
T d1pgua2 66 ---------DDT----LKVNGI------TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126 (287)
T ss_dssp ---------TTE----EEETTE------EEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred ---------ccc----cccccc------cccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeee
Confidence 000 011111 1112345678888888777777778888999999999999988777766554
Q ss_pred EEecCCCCEEEEEECCC-eEEEEeCCCceEEEEe--cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 601 QFNPMDDDYFISGSLDA-KVRIWSISDRLVVDWT--DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 601 ~fsp~~~~~L~sgs~Dg-~I~IWDl~~~~~~~~~--~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
++ ++..+++++.++ .|++|++......... .+...+++++|+|++.+|++|+.||.|++||+.++.....
T Consensus 127 --~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~---- 199 (287)
T d1pgua2 127 --SL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS---- 199 (287)
T ss_dssp --EE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC----
T ss_pred --ec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccc----
Confidence 45 567777777765 6999999876654433 3557899999999999999999999999999998765322
Q ss_pred ecccccCCCCCeEEEEEcCCC---------CceEEEEeCCCcEEEEeCCcceEEE-EeecCCCCeEEEEEeCCCCEEEEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSN---------PSEVLVTSADSRIRILDGLDIVHKF-RGFRNTSSQISAAFNADGKYIISA 747 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~---------~~~l~sgs~Dg~I~IwD~~~~~~~~-~~~~~~~~V~sl~fspdg~~LaSg 747 (969)
....|...|.+++|+|.+ ..++++|+.|++|+|||..+....+ ....|...|++++|+|++ .|+++
T Consensus 200 ---~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~ 275 (287)
T d1pgua2 200 ---RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSS 275 (287)
T ss_dssp ---CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEE
T ss_pred ---cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEE
Confidence 225788999999999853 3589999999999999976533323 334577889999999986 68999
Q ss_pred eCCCcEEEEEc
Q 002086 748 SEDSQVYVWKR 758 (969)
Q Consensus 748 s~Dg~I~IWdl 758 (969)
+.|+.|++|++
T Consensus 276 g~D~~v~iW~i 286 (287)
T d1pgua2 276 GADACIKRWNV 286 (287)
T ss_dssp ETTSCEEEEEE
T ss_pred ECCCeEEEEEE
Confidence 99999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.4e-25 Score=242.61 Aligned_cols=286 Identities=18% Similarity=0.298 Sum_probs=201.4
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
++.+++++++|.+|.+.|++++|+++ +|++|+.|+++++|+................+............ +
T Consensus 43 d~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---- 113 (342)
T d2ovrb2 43 SAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS---G---- 113 (342)
T ss_dssp ETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEE---E----
T ss_pred ECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccc---c----
Confidence 33444556678899999999999974 99999999999999998877665443332222111111100000 0
Q ss_pred CCcccccCCCCCCCCcccccceeeecC-CCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe-ecC
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLS-EKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF-AHN 594 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~-~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~ 594 (969)
.......++... .+....+..+..... ........+++++.|+.|++||.....++..+ +|.
T Consensus 114 ---------------~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~ 177 (342)
T d2ovrb2 114 ---------------SRDATLRVWDIETGQCLHVLMGHVAAVR-CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177 (342)
T ss_dssp ---------------ETTSEEEEEESSSCCEEEEEECCSSCEE-EEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS
T ss_pred ---------------ccceeEEEeecccccceeeeecccccce-eeccccceeeeecCCCeEEEeecccceeeEEEcCcc
Confidence 000001122222 222223333333322 23333678999999999999999999988777 677
Q ss_pred CCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 002086 595 DYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQL 673 (969)
Q Consensus 595 ~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~ 673 (969)
..+..+.+ ++.+|++++.||.|++||++.++.+. ...|...+.+++++ +++|++|+.||.|++||+...+....
T Consensus 178 ~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~ 252 (342)
T d2ovrb2 178 NRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQT 252 (342)
T ss_dssp SCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cccccccC---CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEeccccccccc
Confidence 77776666 67899999999999999999987665 45566778877775 46999999999999999998775433
Q ss_pred eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceE--EEEe---ecCCCCeEEEEEeCCCCEEEEEe
Q 002086 674 NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVH--KFRG---FRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 674 ~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~--~~~~---~~~~~~V~sl~fspdg~~LaSgs 748 (969)
.. ....|...+.++.+++ .++++++.||+|++||+.+... .+.. ..+...|++++|+|++.+|++|+
T Consensus 253 ~~-----~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~ 324 (342)
T d2ovrb2 253 LQ-----GPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324 (342)
T ss_dssp EC-----STTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred cc-----ccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEe
Confidence 21 1245777888888876 5899999999999999765433 3332 23556799999999999999999
Q ss_pred CCCc----EEEEEcCC
Q 002086 749 EDSQ----VYVWKREE 760 (969)
Q Consensus 749 ~Dg~----I~IWdl~t 760 (969)
.||+ |++||++.
T Consensus 325 ~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 325 RNGTEETKLLVLDFDV 340 (342)
T ss_dssp SSSSSCCEEEEEECCC
T ss_pred CCCCCeeEEEEEeCCC
Confidence 9986 99999974
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.6e-26 Score=247.62 Aligned_cols=257 Identities=13% Similarity=0.127 Sum_probs=195.9
Q ss_pred ceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcc
Q 002086 441 LHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPE 520 (969)
Q Consensus 441 ~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~ 520 (969)
+++++.+++|++.|++|+|+|++++||||+.||+|+|||+.++.....
T Consensus 1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~-------------------------------- 48 (342)
T d1yfqa_ 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD-------------------------------- 48 (342)
T ss_dssp CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE--------------------------------
T ss_pred CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceE--------------------------------
Confidence 467788999999999999999999999999999999999875432211
Q ss_pred cccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCC
Q 002086 521 KKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDY 596 (969)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~ 596 (969)
+....+|.++|.+++|++ +.+|++|+.|++|++|++..+...... .+...
T Consensus 49 --------------------------~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~ 102 (342)
T d1yfqa_ 49 --------------------------LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL 102 (342)
T ss_dssp --------------------------EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCS
T ss_pred --------------------------EEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccc
Confidence 113447999999999987 468999999999999999988777665 23344
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCce----EEEE-ec--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 002086 597 VTCIQFNPMDDDYFISGSLDAKVRIWSISDRL----VVDW-TD--LHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSK 669 (969)
Q Consensus 597 V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~-~~--~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~ 669 (969)
.....+.+ +...+++++.|+.+++||++... .... .. .......+.+.+.+..+++++.|+.|++||+....
T Consensus 103 ~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 181 (342)
T d1yfqa_ 103 GICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181 (342)
T ss_dssp CEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCT
T ss_pred cccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCc
Confidence 44555555 78999999999999999986532 1111 11 12335567788889999999999999999998776
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcc--------eEEEE-------eecCCCCeEE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDI--------VHKFR-------GFRNTSSQIS 734 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~--------~~~~~-------~~~~~~~V~s 734 (969)
....... .......+.+..+.+.+...+++++.||.+.+|+.... ...+. ...+...+++
T Consensus 182 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 256 (342)
T d1yfqa_ 182 DDNGTIE-----ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256 (342)
T ss_dssp TCCCEEE-----ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE
T ss_pred ccceeee-----ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccccee
Confidence 5433221 13445567777777766689999999999999984321 11111 1234556889
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 735 AAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 735 l~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++|+|++++||||+.||.|+|||++++
T Consensus 257 l~~sp~~~~lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 257 IEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp EEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred EEecCCccEEEEECCCCEEEEEECCCC
Confidence 999999999999999999999999983
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.2e-24 Score=227.76 Aligned_cols=238 Identities=18% Similarity=0.266 Sum_probs=190.4
Q ss_pred eeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 442 HLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 442 ~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
+.++.+..|...|+|++| ||++||||+.||+|+|||+.+++++.
T Consensus 6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---------------------------------- 49 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---------------------------------- 49 (293)
T ss_dssp CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE----------------------------------
T ss_pred EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE----------------------------------
Confidence 445556789999998765 79999999999999999998776654
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQ 601 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~ 601 (969)
.+.+|.+.|++++|. +++|++|+.|+.|++|++..+.......+........
T Consensus 50 ---------------------------~l~~H~~~V~~v~~~-~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~ 101 (293)
T d1p22a2 50 ---------------------------ILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 101 (293)
T ss_dssp ---------------------------EECCCSSCEEEEECC-SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred ---------------------------EEecCCCCEeeeecc-cceeecccccccccccccccccccccccccccccccc
Confidence 677899999999996 5899999999999999999999887775444443333
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCce----EEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 002086 602 FNPMDDDYFISGSLDAKVRIWSISDRL----VVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVD 677 (969)
Q Consensus 602 fsp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~ 677 (969)
. + ....++++..++.+.+||..... ......+...+..+.+.+ ..+++++.|+.|++||+.+.+.....
T Consensus 102 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~--- 174 (293)
T d1p22a2 102 R-F-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTL--- 174 (293)
T ss_dssp E-C-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEE---
T ss_pred c-c-cccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEE---
Confidence 3 3 57889999999999999997653 333455667787777654 57889999999999999988765432
Q ss_pred ecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 002086 678 FQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWK 757 (969)
Q Consensus 678 ~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWd 757 (969)
..+...+..+.+++ ..+++++.|+.|++||............+...+. .+++++.+|++|+.||.|++||
T Consensus 175 -----~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~iwd 244 (293)
T d1p22a2 175 -----NGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWD 244 (293)
T ss_dssp -----ECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEECCSSEEEEEETTSCEEEEE
T ss_pred -----cccccccccccCCC---CeEEEecCCCEEEEEecccceeeeeecccceeee--eccccceEEEEEcCCCEEEEEE
Confidence 45667788888765 5899999999999999887666555555555554 4677889999999999999999
Q ss_pred cCC
Q 002086 758 REE 760 (969)
Q Consensus 758 l~t 760 (969)
+..
T Consensus 245 ~~~ 247 (293)
T d1p22a2 245 LVA 247 (293)
T ss_dssp HHH
T ss_pred CCC
Confidence 875
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.1e-25 Score=250.65 Aligned_cols=271 Identities=13% Similarity=0.200 Sum_probs=189.9
Q ss_pred eeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccccc
Q 002086 444 CQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKK 523 (969)
Q Consensus 444 ~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~ 523 (969)
....++|.+.|++|++++ ++|+|||.|++|+|||..+.+.... .
T Consensus 7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~-------~--------------------------- 50 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-------K--------------------------- 50 (393)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-------G---------------------------
T ss_pred eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcc-------c---------------------------
Confidence 345689999999999874 6999999999999999764321100 0
Q ss_pred CCCCCCCCcccccceeeecCCCceeEeccCCCC------EEEEEecC--CcEEEEEeCCCcEEEEECCCCcE----EE-E
Q 002086 524 KGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDD------VLDLSWSR--SHLLLSSSMDKTVRLWDMETKSC----LK-L 590 (969)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~------I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~----i~-~ 590 (969)
........|... +..+.... ..++++++.||.|++|++..... .. .
T Consensus 51 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~ 109 (393)
T d1sq9a_ 51 ---------------------DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 109 (393)
T ss_dssp ---------------------GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE
T ss_pred ---------------------ceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccc
Confidence 000011122222 22333333 35788999999999999764331 11 1
Q ss_pred e------ecCCCeEEEEEecCC----CCEEEEEECCCeEEEEeCCCc------------e---EE----EEecCCCCEEE
Q 002086 591 F------AHNDYVTCIQFNPMD----DDYFISGSLDAKVRIWSISDR------------L---VV----DWTDLHEMVTA 641 (969)
Q Consensus 591 ~------~h~~~V~sv~fsp~~----~~~L~sgs~Dg~I~IWDl~~~------------~---~~----~~~~~~~~V~s 641 (969)
. .+...+..++|.+.. ..++++++.||+|++|++... . .. ....+...+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (393)
T d1sq9a_ 110 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189 (393)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCE
T ss_pred cceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEE
Confidence 1 355678888887722 368899999999999997421 0 11 11223355889
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCc---EEEEeCCc
Q 002086 642 ACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSR---IRILDGLD 718 (969)
Q Consensus 642 v~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~---I~IwD~~~ 718 (969)
++|+|++ +|++|+.||+|+|||+.+++..... .......+|...|.+++|+|++ .+|++|+.|++ |++||...
T Consensus 190 v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~--~~~~~l~~h~~~V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~ 265 (393)
T d1sq9a_ 190 VDISERG-LIATGFNNGTVQISELSTLRPLYNF--ESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEF 265 (393)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEE--ECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTT
T ss_pred EEECCCC-EEEEEeCCCcEEEEeeccccccccc--ccccccccccceEEEccccccc-ceeeeecCCCCcceeeeccccc
Confidence 9999997 8899999999999999988765432 2334446799999999999998 79999998875 89999764
Q ss_pred ceEEEE-------------eecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCcee
Q 002086 719 IVHKFR-------------GFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQ 781 (969)
Q Consensus 719 ~~~~~~-------------~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~ 781 (969)
...... ...|...|++++|+||+++|+||+.|++|+|||+++ ++.+..+..+...+.
T Consensus 266 g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~------g~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 266 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT------KERITTLNMHCDDIE 335 (393)
T ss_dssp CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT------TEEEEEEECCGGGCS
T ss_pred ceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC------CCEEEEECCcCCccc
Confidence 332222 125778899999999999999999999999999998 454555544444443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.4e-24 Score=238.91 Aligned_cols=208 Identities=15% Similarity=0.164 Sum_probs=165.1
Q ss_pred eEeccC-CCCEEEEEecC---CcEEEEEeCCCcEEEEECCCCcEE--------E-EeecCCCeEEEEEecCCCCEEEEEE
Q 002086 548 CSFIGH-LDDVLDLSWSR---SHLLLSSSMDKTVRLWDMETKSCL--------K-LFAHNDYVTCIQFNPMDDDYFISGS 614 (969)
Q Consensus 548 ~~l~gH-~~~I~~l~fs~---~~~L~Sgs~DgtV~IWDl~t~~~i--------~-~~~h~~~V~sv~fsp~~~~~L~sgs 614 (969)
..+.+| ...|++++|+| +.+|++|+.||+|+|||+..++.. . ...|.++|.+++|++ ++.+|++++
T Consensus 56 ~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~ 134 (325)
T d1pgua1 56 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVG 134 (325)
T ss_dssp EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceee
Confidence 356677 46899999997 479999999999999999754321 1 125889999999999 888888776
Q ss_pred C--CCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 615 L--DAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQN-ALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 615 ~--Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~-Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
. ++.+++|+..+++.+. +..|...|.+++|+|++.+ +++++.|+.|++||+...+...... ....+...|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~-----~~~~~~~~v~ 209 (325)
T d1pgua1 135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-----THHKQGSFVR 209 (325)
T ss_dssp CCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-----SSSCTTCCEE
T ss_pred ccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecc-----cccCCCCccE
Confidence 5 6789999999887654 4557889999999999875 6779999999999998776543321 2256788899
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEe---CCCCEEEEEeCCCcEEEEEcCCC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFN---ADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fs---pdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+++|+|++..++++++.|+.|++||..+.........|...+..+.|+ +||++|++++.|+.|+|||+.++
T Consensus 210 ~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~ 283 (325)
T d1pgua1 210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS 283 (325)
T ss_dssp EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred EeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence 999999877899999999999999987655544444455555444444 68999999999999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=9.5e-25 Score=237.35 Aligned_cols=339 Identities=15% Similarity=0.195 Sum_probs=224.9
Q ss_pred hccCCCcce-eeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHH
Q 002086 333 KSVGHSPVV-KELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQRE 411 (969)
Q Consensus 333 ~~~GHs~~V-~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~ 411 (969)
++.||...| .|+.+ ++..+++|+.|..+..|.... .+....++.+.+.+.++.|.++... .+
T Consensus 7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~-----~~~~~~l~~H~~~V~~l~~s~~~~l-~s--------- 69 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN-----KKFLLQLSGHDGGVWALKYAHGGIL-VS--------- 69 (355)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTT-----TEEEEEEECCSSCEEEEEEETTTEE-EE---------
T ss_pred EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCC-----CcEEEEEECCCCCEEEEEEcCCCEE-EE---------
Confidence 468998875 55555 345788999999888776433 2222333344444555555544322 11
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEec--ccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEee
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQ--AHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMS 489 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~--gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~ 489 (969)
+..++.+.++ ++...+...... .+...+..+.+.+++.++++++.|+.|++||+.+...+...
T Consensus 70 ------~s~D~~i~iw---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~ 134 (355)
T d1nexb2 70 ------GSTDRTVRVW---------DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 134 (355)
T ss_dssp ------EETTCCEEEE---------ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-------
T ss_pred ------Eecccccccc---------cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccc
Confidence 1233333333 333333333333 34455667778899999999999999999999876554321
Q ss_pred cCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEE
Q 002086 490 EGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLL 569 (969)
Q Consensus 490 ~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~ 569 (969)
......... . ...............|...+...... +++++
T Consensus 135 ~~~~~~~~~--~------------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 175 (355)
T d1nexb2 135 GEEHDYPLV--F------------------------------------HTPEENPYFVGVLRGHMASVRTVSGH-GNIVV 175 (355)
T ss_dssp ----CCCEE--E------------------------------------SCTTTCTTEEEEEECCSSCEEEEEEE-TTEEE
T ss_pred cccceeccc--e------------------------------------eccccccceeeeeeeccccccccccc-cceee
Confidence 110000000 0 00000112233455677777766554 58999
Q ss_pred EEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccC
Q 002086 570 SSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPD 647 (969)
Q Consensus 570 Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspd 647 (969)
++..|+.|++||+.+++.+... .+...+.++.|+| .+.++++++.|+.|++||+.++..+. +..|...|.+++++
T Consensus 176 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~-- 252 (355)
T d1nexb2 176 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS-- 252 (355)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--
T ss_pred eecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--
Confidence 9999999999999999988777 6888999999999 89999999999999999999987654 55677889999986
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE-EcCCCCceEEEEeCCCcEEEEeCCcceEEE-Ee
Q 002086 648 GQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ-FSPSNPSEVLVTSADSRIRILDGLDIVHKF-RG 725 (969)
Q Consensus 648 g~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~-fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-~~ 725 (969)
+++|++|+.||.|++||+.+..... ..|...+.++. +++++ . +++++.|+.|+|||+.+..... ..
T Consensus 253 ~~~l~~~~~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~~~~~~~-~-~l~~g~d~~i~vwd~~tg~~~~~~~ 320 (355)
T d1nexb2 253 DKFLVSAAADGSIRGWDANDYSRKF----------SYHHTNLSAITTFYVSD-N-ILVSGSENQFNIYNLRSGKLVHANI 320 (355)
T ss_dssp SSEEEEECTTSEEEEEETTTCCEEE----------EEECTTCCCCCEEEECS-S-EEEEEETTEEEEEETTTCCBCCSCT
T ss_pred cceeeeeecccccccccccccceec----------ccccCCceEEEEEcCCC-C-EEEEEeCCEEEEEECCCCCEEEEEe
Confidence 4699999999999999998875432 22334455544 45544 4 4555569999999987644332 23
Q ss_pred ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 002086 726 FRNTSSQISAAFNADGKYIISASEDSQVYVWKR 758 (969)
Q Consensus 726 ~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl 758 (969)
..|...|.+++|+|+ .+|++++.||.++||.+
T Consensus 321 ~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 321 LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 456778999999987 57888999999777654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=4.7e-24 Score=229.63 Aligned_cols=285 Identities=13% Similarity=0.168 Sum_probs=202.6
Q ss_pred hhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccchHH
Q 002086 332 EKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQRE 411 (969)
Q Consensus 332 ~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~~~ 411 (969)
+.+.||...|++|++..++..+++++.|..+..|.....+..+... ......+.++.|.++...+..
T Consensus 6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~----~~h~~~v~~v~~~~~g~~~~~--------- 72 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP----DVHATMITGIKTTSKGDLFTV--------- 72 (299)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS----CSCSSCEEEEEECTTSCEEEE---------
T ss_pred eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc----CCCCCcEEEEEeeccceeecc---------
Confidence 5568999999999988888889999999988888643322221111 122334455555555432111
Q ss_pred HHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecC
Q 002086 412 QKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEG 491 (969)
Q Consensus 412 ~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~ 491 (969)
..+... +++...... .. ........|...+.+++|+++++++++++ ++.+++|+.......
T Consensus 73 -------~~d~~v--~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~~----- 133 (299)
T d1nr0a2 73 -------SWDDHL--KVVPAGGSG--VD--SSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTEV----- 133 (299)
T ss_dssp -------ETTTEE--EEECSSSSS--SC--TTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEEE-----
T ss_pred -------cceeeE--EEeccCCcc--cc--ccccccccccccccccccccccccccccc-ccccccccccccccc-----
Confidence 122222 222221111 11 11223456888999999999999877765 568999985421111
Q ss_pred CccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEE
Q 002086 492 NLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLS 570 (969)
Q Consensus 492 ~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~S 570 (969)
.....+.+++|+| +++|++
T Consensus 134 ------------------------------------------------------------~~~~~~~~~~~s~~~~~l~~ 153 (299)
T d1nr0a2 134 ------------------------------------------------------------PISYNSSCVALSNDKQFVAV 153 (299)
T ss_dssp ------------------------------------------------------------ECSSCEEEEEECTTSCEEEE
T ss_pred ------------------------------------------------------------cccccccccccccccccccc
Confidence 1233567899999 789999
Q ss_pred EeCCCcEEEEECCCCcEEE--EeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEE----EEecCCCCEEEEEE
Q 002086 571 SSMDKTVRLWDMETKSCLK--LFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVV----DWTDLHEMVTAACY 644 (969)
Q Consensus 571 gs~DgtV~IWDl~t~~~i~--~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~----~~~~~~~~V~sv~f 644 (969)
|+.|+.|++||+.+++... ...|...|++++|+| ++.+|++++.|+.|++||+.++... .+..|...|++++|
T Consensus 154 g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 232 (299)
T d1nr0a2 154 GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232 (299)
T ss_dssp EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999887654 458999999999999 8999999999999999999876544 23456788999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeC
Q 002086 645 TPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDG 716 (969)
Q Consensus 645 spdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~ 716 (969)
+|++++|++|+.||.|++||+.+........ ....+...+.++.|.+ + .+|++++.|++|++||+
T Consensus 233 s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~-~-~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIII-----KGAHAMSSVNSVIWLN-E-TTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCTTSCCEEE-----TTSSTTSCEEEEEEEE-T-TEEEEEETTSCEEEEEC
T ss_pred cccccceEEEcCCCEEEEEECCCCCcceEEE-----ecCCCCCcEEEEEECC-C-CEEEEEeCCCEEEEEec
Confidence 9999999999999999999998876432211 1133455677776655 4 58999999999999995
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.2e-22 Score=214.23 Aligned_cols=239 Identities=21% Similarity=0.408 Sum_probs=180.0
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
++.+++++++|++|.+.|++|+| ++++|+||+.|+.|++|++..+.......
T Consensus 41 d~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~-------------------------- 92 (293)
T d1p22a2 41 DKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI-------------------------- 92 (293)
T ss_dssp ESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC--------------------------
T ss_pred ECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccc--------------------------
Confidence 44455667788999999999987 67899999999999999998776544211
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEE----Eee
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLK----LFA 592 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~----~~~ 592 (969)
.+..... ........++++..++.+.+||..+..... ...
T Consensus 93 -----------------------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (293)
T d1p22a2 93 -----------------------------------HHCEAVL-HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 136 (293)
T ss_dssp -----------------------------------CCCSCEE-EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred -----------------------------------ccccccc-cccccccceeecccccceeEeeccccccccccccccc
Confidence 1111111 222336789999999999999998765332 226
Q ss_pred cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
|...|.++.+. ...+++++.|+.|++||+++++.+. +..+...+..+.++ +.++++++.||.|++||+++....
T Consensus 137 ~~~~v~~~~~~---~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~ 211 (293)
T d1p22a2 137 HRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACL 211 (293)
T ss_dssp CSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE
T ss_pred cccccccceec---ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceee
Confidence 88889888885 4788999999999999999987654 44566777777665 568999999999999999988765
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc---------ceEEEEeecCCCCeEEEEEeCCCC
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD---------IVHKFRGFRNTSSQISAAFNADGK 742 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~---------~~~~~~~~~~~~~V~sl~fspdg~ 742 (969)
... ..+...+..+. +++ .+|++++.||.|++||... .........|...|++++| ++.
T Consensus 212 ~~~--------~~~~~~v~~~~--~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~ 278 (293)
T d1p22a2 212 RVL--------EGHEELVRCIR--FDN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF 278 (293)
T ss_dssp EEE--------CCCSSCEEEEE--CCS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS
T ss_pred eee--------cccceeeeecc--ccc-eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCC
Confidence 432 45566666544 444 6899999999999999321 1222333456778888888 567
Q ss_pred EEEEEeCCCcEEEEE
Q 002086 743 YIISASEDSQVYVWK 757 (969)
Q Consensus 743 ~LaSgs~Dg~I~IWd 757 (969)
+|+||+.||+|+|||
T Consensus 279 ~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 279 QIVSSSHDDTILIWD 293 (293)
T ss_dssp CEEECCSSSEEEEEC
T ss_pred EEEEEecCCEEEEeC
Confidence 899999999999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=1.2e-22 Score=222.81 Aligned_cols=258 Identities=11% Similarity=0.096 Sum_probs=194.9
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCC--cEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDR--VIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~Dg--tVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
++......+ + +|.+.|.+++|+|||++|++++.|. .|++||+.+++..
T Consensus 30 d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~---------------------------- 79 (360)
T d1k32a3 30 DVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE---------------------------- 79 (360)
T ss_dssp CTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE----------------------------
T ss_pred ECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE----------------------------
Confidence 444444443 3 6999999999999999998877653 7999999876543
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-e
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-A 592 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~ 592 (969)
.+..|...|.+++|+| +++|++++.++.+++|++.++++...+ .
T Consensus 80 ----------------------------------~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (360)
T d1k32a3 80 ----------------------------------KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125 (360)
T ss_dssp ----------------------------------ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ----------------------------------EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeec
Confidence 3456889999999999 899999999999999999999988877 6
Q ss_pred cCCCeEEEEEecCCCCEEEEEE----------CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGS----------LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRL 662 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs----------~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~I 662 (969)
|...+.+++|+| ++.+|+.+. .++.+++||+.+++......+...+..++|+|+|++|++++.++.+.+
T Consensus 126 ~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~ 204 (360)
T d1k32a3 126 REAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS 204 (360)
T ss_dssp SSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred ccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEc
Confidence 888999999999 999988654 345699999999999988888899999999999999999999999999
Q ss_pred EEcCCCceeee-----eeeeec------------------------------ccccCCCCCeEEEEEcCCC---------
Q 002086 663 YSIEDSKLHQL-----NQVDFQ------------------------------TKKKSSTRKITGFQFSPSN--------- 698 (969)
Q Consensus 663 wDl~~~~~~~~-----~~~~~~------------------------------~~~~~h~~~It~l~fspd~--------- 698 (969)
|+......... ..+.+. ............+...+++
T Consensus 205 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (360)
T d1k32a3 205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284 (360)
T ss_dssp ECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCC
T ss_pred ccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEec
Confidence 98765432110 000000 0000112233344444322
Q ss_pred -C--ceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCc
Q 002086 699 -P--SEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRN 763 (969)
Q Consensus 699 -~--~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~ 763 (969)
+ .+++.++.++.|++||....... . +...|.+++|+|||++|++++.||.|++||+++++.
T Consensus 285 ~~~~~~~~~~~~~~~i~~~d~~~~~~~--~--~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 285 GEFAAYYQGAPEKGVLLKYDVKTRKVT--E--VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348 (360)
T ss_dssp CSHHHHHHCCCCCEEEEEEETTTCCEE--E--EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred CCCeeEEEecCCCCEEEEEECCCCeEE--E--ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence 1 12344566889999997654321 1 223488999999999999999999999999998654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=8.5e-22 Score=211.75 Aligned_cols=300 Identities=8% Similarity=-0.016 Sum_probs=210.0
Q ss_pred ehhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEeeecCCccccCCCCcccch
Q 002086 330 EFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMSVKGDKECINPNPLLGDQ 409 (969)
Q Consensus 330 E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~~~gd~~~~~~~~l~~~~ 409 (969)
-++...+|++.|++|++..+...+++++.|..+..|. +.....
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd-----~~~~~~-------------------------------- 45 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK-----FDIQAK-------------------------------- 45 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEE-----EETTTT--------------------------------
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEE-----ccCCCc--------------------------------
Confidence 3556789999999999888888888888888776664 111100
Q ss_pred HHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCC-CCEEEEEeCCCcEEEEecccceEEEe
Q 002086 410 REQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLD-ARFLASAGEDRVIHVWEVQECEVMSM 488 (969)
Q Consensus 410 ~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpD-g~~LaTgs~DgtVrIWDl~tg~~l~~ 488 (969)
...+....+|.++|++++|+|+ +.+|++|+.|++|++|++..+.....
T Consensus 46 -------------------------------~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~ 94 (342)
T d1yfqa_ 46 -------------------------------NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA 94 (342)
T ss_dssp -------------------------------EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEE
T ss_pred -------------------------------ceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccc
Confidence 0001113369999999999986 45899999999999999886544332
Q ss_pred ecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcE
Q 002086 489 SEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHL 567 (969)
Q Consensus 489 ~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~ 567 (969)
.. ..+........+.+ ...
T Consensus 95 ~~------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 114 (342)
T d1yfqa_ 95 LT------------------------------------------------------------NNEANLGICRICKYGDDK 114 (342)
T ss_dssp CB------------------------------------------------------------SCCCCSCEEEEEEETTTE
T ss_pred cc------------------------------------------------------------cccccccccccccccccc
Confidence 11 11122222333333 789
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEe-------ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCce----EEEEecCC
Q 002086 568 LLSSSMDKTVRLWDMETKSCLKLF-------AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRL----VVDWTDLH 636 (969)
Q Consensus 568 L~Sgs~DgtV~IWDl~t~~~i~~~-------~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~----~~~~~~~~ 636 (969)
+++++.|+++++||++.+...... ........+.+.+ .+..+++++.|+.|++||+.... ........
T Consensus 115 ~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 193 (342)
T d1yfqa_ 115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193 (342)
T ss_dssp EEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS
T ss_pred ccccccccccceeeccccccceeeecccccccccceeeeeeeec-cCCceeeecCCCcEEEEecccCcccceeeeecccc
Confidence 999999999999998654322211 1233445666777 78999999999999999997653 22333444
Q ss_pred CCEEEEEEc-cCCCEEEEEeCCCcEEEEEcCCCceeee-------eeeeecccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 637 EMVTAACYT-PDGQNALIGSHKGSCRLYSIEDSKLHQL-------NQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 637 ~~V~sv~fs-pdg~~Lasgs~dg~I~IwDl~~~~~~~~-------~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
..+.+..+. .++..+++++.||.+.+|++........ ...........|...|++++|+|++ .+|++|+.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~D 272 (342)
T d1yfqa_ 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSD 272 (342)
T ss_dssp SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETT
T ss_pred cceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCC
Confidence 556665555 4678899999999999999875432211 1111122235677789999999998 799999999
Q ss_pred CcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 709 SRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 709 g~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
|.|+|||..+........ ....+..++|+|+|++|++++.|+.+++|....
T Consensus 273 g~v~vWD~~~~~~l~~~~-~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 273 GIISCWNLQTRKKIKNFA-KFNEDSVVKIACSDNILCLATSDDTFKTNAAID 323 (342)
T ss_dssp SCEEEEETTTTEEEEECC-CCSSSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred CEEEEEECCCCcEEEEec-CCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence 999999988765544432 334456788999999999999999999987654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=2.8e-21 Score=217.80 Aligned_cols=281 Identities=12% Similarity=0.066 Sum_probs=191.2
Q ss_pred EeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCc-------EEEEeecCCCeEEEEE------ecCCCCEEEEEEC
Q 002086 549 SFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKS-------CLKLFAHNDYVTCIQF------NPMDDDYFISGSL 615 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~-------~i~~~~h~~~V~sv~f------sp~~~~~L~sgs~ 615 (969)
..++|.+.|+++++++ ++|+|++.|++|+|||..+.. ......|...+..+.. ...+..++++++.
T Consensus 9 ~~~~H~~~I~~v~~~~-~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 87 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87 (393)
T ss_dssp ESSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred cCCcccCccEEEEEeC-CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence 5679999999999875 799999999999999987643 3444455554433332 1112346789999
Q ss_pred CCeEEEEeCCCce----EEE--E-----ecCCCCEEEEEEccC-----CCEEEEEeCCCcEEEEEcCCCceee-------
Q 002086 616 DAKVRIWSISDRL----VVD--W-----TDLHEMVTAACYTPD-----GQNALIGSHKGSCRLYSIEDSKLHQ------- 672 (969)
Q Consensus 616 Dg~I~IWDl~~~~----~~~--~-----~~~~~~V~sv~fspd-----g~~Lasgs~dg~I~IwDl~~~~~~~------- 672 (969)
||.|++|++.... ... . ..+...+..++|.++ +.++++++.||.+++|++.......
T Consensus 88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 167 (393)
T d1sq9a_ 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167 (393)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence 9999999975421 111 1 112345778888775 4678999999999999985332100
Q ss_pred --ee-eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEE------eecCCCCeEEEEEeCCCCE
Q 002086 673 --LN-QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR------GFRNTSSQISAAFNADGKY 743 (969)
Q Consensus 673 --~~-~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~------~~~~~~~V~sl~fspdg~~ 743 (969)
.. ..........+...+++++|+|++ +|++|+.|++|+|||......... ...|...|.+++|+|||++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 245 (393)
T d1sq9a_ 168 SPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245 (393)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred ccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccce
Confidence 00 000112224556678999999986 899999999999999875443322 2346788999999999999
Q ss_pred EEEEeCCCc---EEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCccc
Q 002086 744 IISASEDSQ---VYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSA 820 (969)
Q Consensus 744 LaSgs~Dg~---I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~ 820 (969)
|++|+.|++ |++||+++++.+ ..+........ ......| ....-...
T Consensus 246 l~sgs~D~t~~~i~lwd~~~g~~~------~~l~~~~~~~~---------~~~~~~g---------------H~~~V~~l 295 (393)
T d1sq9a_ 246 LAIAHDSNSFGCITLYETEFGERI------GSLSVPTHSSQ---------ASLGEFA---------------HSSWVMSL 295 (393)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEE------EEECBC-----------------CCBS---------------BSSCEEEE
T ss_pred eeeecCCCCcceeeecccccceee------eeecccccccc---------ceeeeec---------------ccCceeee
Confidence 999999975 999999984332 21111110000 0000000 11112345
Q ss_pred ccCCCCCCccccCCCCccccCCCCCCccccCCCCCCCCcccc
Q 002086 821 TSSPTKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLI 862 (969)
Q Consensus 821 ~~SP~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~i 862 (969)
+++|++.++++++.|+.+..|...++....++..|.+.+...
T Consensus 296 ~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~ 337 (393)
T d1sq9a_ 296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIE 337 (393)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSG
T ss_pred ccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCC
Confidence 689999999999999999999999999999999998877543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=2.6e-22 Score=214.68 Aligned_cols=240 Identities=12% Similarity=0.125 Sum_probs=170.7
Q ss_pred CCceeEeccCCCCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 544 EKPFCSFIGHLDDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
.++++++.||.++|++++|++ |+||+.||+|++||+.++. ..|...|.++++.+ +..+++++.|++|++|+
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~---l~sgs~Dg~v~~Wd~~~~~----~~h~~~V~~~~~~~--~~~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMH----QDHSNLIVSLDNSK--AQEYSSISWDDTLKVNG 73 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT---TEEEETTSCEEETTTTEEE----CCCCSCEEEEECCS--TTCCEEEETTTEEEETT
T ss_pred cceeEEECCCCCceEEEEECc---EEEEeCCCeEEEEECCCCC----CCCCCCEEEEEecC--CCeEEEEeecccccccc
Confidence 457789999999999999987 9999999999999997642 47999999999986 56789999999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEE
Q 002086 624 ISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVL 703 (969)
Q Consensus 624 l~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~ 703 (969)
+... .....+.++++++++..++++ .++.+.+|+..+++...... ....+. ++++++ ..++
T Consensus 74 ~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~-~~~~ 134 (287)
T d1pgua2 74 ITKH------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR---------LNSPGS--AVSLSQ-NYVA 134 (287)
T ss_dssp EEEE------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE---------CSSCEE--EEEECS-SEEE
T ss_pred cccc------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecc---------ccceee--eeeccC-ccee
Confidence 7543 234567888999887666654 56678899998887654432 122333 455555 5666
Q ss_pred EEeCC-CcEEEEeCCcceEEEEe-ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEE-ecccCCce
Q 002086 704 VTSAD-SRIRILDGLDIVHKFRG-FRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHRNASTGKRAII-TTRNHEHF 780 (969)
Q Consensus 704 sgs~D-g~I~IwD~~~~~~~~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~-~~~~~~~~ 780 (969)
+++.+ +.|++|+.......... ..+...+++++|+|++.+|++|+.||.|++||+.+++. ... ...+...+
T Consensus 135 v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~------~~~~~~~h~~~v 208 (287)
T d1pgua2 135 VGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV------KTSRWAFRTSKI 208 (287)
T ss_dssp EEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------EECCSCCCSSCE
T ss_pred eeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccc------cccccccccccc
Confidence 66666 57999998765544443 33567799999999999999999999999999987422 111 11112222
Q ss_pred eeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCccccCCCCccccCCCC
Q 002086 781 QCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSPAGHSRRLLPPLPKK 844 (969)
Q Consensus 781 ~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~~~~~~~~L~~~~~~ 844 (969)
.+..+. .. ........+++.++++++.|+.++.|...
T Consensus 209 ~~~~~~------p~---------------------~~~~~~~~~~~~~l~sgs~D~~i~iw~~~ 245 (287)
T d1pgua2 209 NAISWK------PA---------------------EKGANEEEIEEDLVATGSLDTNIFIYSVK 245 (287)
T ss_dssp EEEEEC------CC---------------------C------CCSCCEEEEEETTSCEEEEESS
T ss_pred ceeeec------cc---------------------ccccccccCCCCeeEeecCCCeEEEEECC
Confidence 221111 00 01122345667788899999999999754
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.85 E-value=2.4e-21 Score=212.30 Aligned_cols=323 Identities=11% Similarity=0.045 Sum_probs=221.1
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcc
Q 002086 455 WTIKFSL-DARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYV 533 (969)
Q Consensus 455 ~~l~fSp-Dg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 533 (969)
+.-.||| ||+++|+++ +|.|.|||+.++..+.
T Consensus 6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~---------------------------------------------- 38 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK---------------------------------------------- 38 (360)
T ss_dssp GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----------------------------------------------
T ss_pred hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEE----------------------------------------------
Confidence 3467999 999999987 5789999998765432
Q ss_pred cccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC--cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEE
Q 002086 534 HVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK--TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYF 610 (969)
Q Consensus 534 ~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg--tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L 610 (969)
.+|...|.+++|+| +++|++++.+. .|++||+.+++......|...|.+++|+| ++.+|
T Consensus 39 -----------------~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l 100 (360)
T d1k32a3 39 -----------------VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR-NGKFA 100 (360)
T ss_dssp -----------------CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT-TSSEE
T ss_pred -----------------ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecc-ccccc
Confidence 15888999999999 77887776553 79999999999998889999999999999 99999
Q ss_pred EEEECCCeEEEEeCCCceEEEEe-cCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEEcCCCceeeeeeeeec
Q 002086 611 ISGSLDAKVRIWSISDRLVVDWT-DLHEMVTAACYTPDGQNALIGS----------HKGSCRLYSIEDSKLHQLNQVDFQ 679 (969)
Q Consensus 611 ~sgs~Dg~I~IWDl~~~~~~~~~-~~~~~V~sv~fspdg~~Lasgs----------~dg~I~IwDl~~~~~~~~~~~~~~ 679 (969)
++++.++.+++|++.+++..... .+...+.+++|+|+|++|+.+. .++.+++||+.+++....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~------ 174 (360)
T d1k32a3 101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA------ 174 (360)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC------
T ss_pred ceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee------
Confidence 99999999999999998876554 4557789999999999998654 344689999998765432
Q ss_pred ccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE-------EEeecCCCCeEEEEEeCCCCEEEEEeCCCc
Q 002086 680 TKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK-------FRGFRNTSSQISAAFNADGKYIISASEDSQ 752 (969)
Q Consensus 680 ~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~-------~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~ 752 (969)
..+...+..++|+|++ ..|++++.++.+.+|+....... .....+...+..+.|++++..++++..+..
T Consensus 175 ---~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 250 (360)
T d1k32a3 175 ---TTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 250 (360)
T ss_dssp ---SCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCT
T ss_pred ---cccccccccccccCCC-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeec
Confidence 4456778899999998 78999999999999995433221 111223333445567788877776654422
Q ss_pred ---EEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcc-cC-CCCCccEEEccccccc--CCCCcccccCCC
Q 002086 753 ---VYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMV-KG-EPPPTPVQTKKHAKRI--SSNPTSATSSPT 825 (969)
Q Consensus 753 ---I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i-~G-~~~~~~v~~~~~~~~~--~~~~~~~~~SP~ 825 (969)
.++|.+... .++...+ .....+.....+....+....+ .+ .+....+|.....+.. .......++||+
T Consensus 251 ~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpD 325 (360)
T d1k32a3 251 DMYKRSSPINVD----PGDYRMI-IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSAD 325 (360)
T ss_dssp TGGGGCEECSCC----CBCEEEE-EECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTT
T ss_pred ccccceeecccC----cCceeEe-eecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCC
Confidence 234433221 1221111 1112222111111100000011 12 2333344544333221 122345679999
Q ss_pred CCCccccCCCCccccCCCCCCccccCCCCCCC
Q 002086 826 KEGSPAGHSRRLLPPLPKKTNKVERVPSPPEE 857 (969)
Q Consensus 826 ~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee 857 (969)
|.+++.++.++.++.|+...+..++++.....
T Consensus 326 G~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~ 357 (360)
T d1k32a3 326 RKTVMVRKDDGKIYTFPLEKPEDERTVETDKR 357 (360)
T ss_dssp SCEEEEEETTSCEEEEESSCTTSCEECCCCSS
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEEEeccc
Confidence 99999999999999999888776666544443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.84 E-value=7.5e-18 Score=179.36 Aligned_cols=254 Identities=11% Similarity=0.127 Sum_probs=197.2
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
++|++++++++++... +.+..++|+|||++| ++++.++.|++||+.+++.+..+
T Consensus 16 v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~------------------------ 70 (301)
T d1l0qa2 16 VIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV------------------------ 70 (301)
T ss_dssp EEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE------------------------
T ss_pred EEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee------------------------
Confidence 5588888888888754 557899999999987 56778999999999988876532
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEe
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
..|. .+..+.|++ +. .++++..++.+.+|+..+++....+
T Consensus 71 -------------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (301)
T d1l0qa2 71 -------------------------------------PAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112 (301)
T ss_dssp -------------------------------------ECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred -------------------------------------eccc-cccccccccccccccccccccceeeecccccceeeeec
Confidence 2232 357788987 44 5666778889999999999999999
Q ss_pred ecCCCeEEEEEecCCCCEE-EEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCC-CcEEEEEcCCCc
Q 002086 592 AHNDYVTCIQFNPMDDDYF-ISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHK-GSCRLYSIEDSK 669 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L-~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~d-g~I~IwDl~~~~ 669 (969)
.+...+.++.|+| ++..+ +++..++.+.+|+..+............+..++++|++..++++..+ +.+.+|+.....
T Consensus 113 ~~~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (301)
T d1l0qa2 113 KTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (301)
T ss_dssp ECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cccccceEEEeec-CCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccccccccccccee
Confidence 8888999999999 77765 55667889999999999988888888889999999999998887765 567777777665
Q ss_pred eeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE--eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEE-EE
Q 002086 670 LHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT--SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYI-IS 746 (969)
Q Consensus 670 ~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg--s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~L-aS 746 (969)
..... .....+..++|++++...++++ ..++.|++||..+....... .....+..++|+|||++| ++
T Consensus 192 ~~~~~---------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~va~spdg~~l~va 261 (301)
T d1l0qa2 192 VIDTV---------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI-PVGPDPAGIAVTPDGKKVYVA 261 (301)
T ss_dssp EEEEE---------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE-ECCSSEEEEEECTTSSEEEEE
T ss_pred eeecc---------cccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEE-cCCCCEEEEEEeCCCCEEEEE
Confidence 54332 2334578899999985444443 23468999998766544332 234567899999999987 57
Q ss_pred EeCCCcEEEEEcCCCC
Q 002086 747 ASEDSQVYVWKREEHR 762 (969)
Q Consensus 747 gs~Dg~I~IWdl~t~~ 762 (969)
++.|+.|++||+++++
T Consensus 262 ~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 262 LSFCNTVSVIDTATNT 277 (301)
T ss_dssp ETTTTEEEEEETTTTE
T ss_pred ECCCCeEEEEECCCCe
Confidence 7789999999999843
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.80 E-value=3.4e-18 Score=194.78 Aligned_cols=269 Identities=13% Similarity=0.097 Sum_probs=189.2
Q ss_pred cccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCC
Q 002086 434 SYKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGS 513 (969)
Q Consensus 434 ~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~ 513 (969)
.+||+.+++++.+|..|. .+..++|||||++|++++.|++|++||+.+++......
T Consensus 45 ~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~----------------------- 100 (426)
T d1hzua2 45 ALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE----------------------- 100 (426)
T ss_dssp EEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE-----------------------
T ss_pred EEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE-----------------------
Confidence 366889999999999885 59999999999999999999999999999876543211
Q ss_pred CCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEe
Q 002086 514 SPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLF 591 (969)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~ 591 (969)
+....+|...+.+++|+| +++| +++..+++|++||..++.++...
T Consensus 101 ---------------------------------i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~ 147 (426)
T d1hzua2 101 ---------------------------------IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147 (426)
T ss_dssp ---------------------------------EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred ---------------------------------EeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEe
Confidence 112235667777888888 6765 55568999999999999988765
Q ss_pred -ec-----------CCCeEEEEEecCCCCEEEEEE-CCCeEEEEeCCCce--EEEEecCCCCEEEEEEccCCCEEEEEe-
Q 002086 592 -AH-----------NDYVTCIQFNPMDDDYFISGS-LDAKVRIWSISDRL--VVDWTDLHEMVTAACYTPDGQNALIGS- 655 (969)
Q Consensus 592 -~h-----------~~~V~sv~fsp~~~~~L~sgs-~Dg~I~IWDl~~~~--~~~~~~~~~~V~sv~fspdg~~Lasgs- 655 (969)
.| ......+.+++ ++..++... ..+.+.+++..... .+....+...+..+.|+|++++++++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~i~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~ 226 (426)
T d1hzua2 148 STRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAAN 226 (426)
T ss_dssp ECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEET
T ss_pred eccCCCccceeecCCCceeEEEECC-CCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeee
Confidence 23 33345555555 444444333 33455555555443 334556677889999999999888766
Q ss_pred CCCcEEEEEcCCCceeeeeeee----------------------------------------------ecccccCCCCCe
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVD----------------------------------------------FQTKKKSSTRKI 689 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~----------------------------------------------~~~~~~~h~~~I 689 (969)
.+..+.+++..+++........ ......+|...+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v 306 (426)
T d1hzua2 227 NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS 306 (426)
T ss_dssp TCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCC
T ss_pred cccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCce
Confidence 4557888888876653321100 111234667788
Q ss_pred EEEEEcCCCCceEEE-------EeCCCcEEEEeCCcce--EEEE-------eecCCCCeEEEEEeCCCCEEEEE-----e
Q 002086 690 TGFQFSPSNPSEVLV-------TSADSRIRILDGLDIV--HKFR-------GFRNTSSQISAAFNADGKYIISA-----S 748 (969)
Q Consensus 690 t~l~fspd~~~~l~s-------gs~Dg~I~IwD~~~~~--~~~~-------~~~~~~~V~sl~fspdg~~LaSg-----s 748 (969)
..++|+|++ .+|++ +..+++|+|||..+.. ..+. ...+...+..++|||||++|+.+ +
T Consensus 307 ~~v~~sPdg-~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~ 385 (426)
T d1hzua2 307 LFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKN 385 (426)
T ss_dssp CCEECCTTC-SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTT
T ss_pred eEEEcCCCC-ceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCC
Confidence 999999998 66664 4457899999976532 2221 12345668899999999977543 3
Q ss_pred CCCcEEEEEcCCC
Q 002086 749 EDSQVYVWKREEH 761 (969)
Q Consensus 749 ~Dg~I~IWdl~t~ 761 (969)
.+|.|+|||.++.
T Consensus 386 ~~~~i~v~D~~T~ 398 (426)
T d1hzua2 386 DSSALVVVDDKTL 398 (426)
T ss_dssp SCCEEEEEETTTT
T ss_pred CCCeEEEEECCCC
Confidence 5888999999984
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=2.3e-17 Score=178.04 Aligned_cols=233 Identities=9% Similarity=0.039 Sum_probs=174.6
Q ss_pred CEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecC
Q 002086 464 RFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLS 543 (969)
Q Consensus 464 ~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 543 (969)
+||+|++.|++|+|||+.+++++..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~----------------------------------------------------- 28 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVIT----------------------------------------------------- 28 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE-----------------------------------------------------
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEE-----------------------------------------------------
Confidence 489999999999999999988876432
Q ss_pred CCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEee------cCCCeEEEEEecCCCCEEEEEE-
Q 002086 544 EKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLFA------HNDYVTCIQFNPMDDDYFISGS- 614 (969)
Q Consensus 544 ~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~~------h~~~V~sv~fsp~~~~~L~sgs- 614 (969)
+..+...+.+++|+| ++++ ++++.++.|.+||+.+++.+..+. +...+..++|+| ++.+++++.
T Consensus 29 ------~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~ 101 (337)
T d1pbyb_ 29 ------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYES 101 (337)
T ss_dssp ------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEE
T ss_pred ------CCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC-CCcEEEEeec
Confidence 122344567899999 6766 567789999999999999988762 234466899999 888888775
Q ss_pred -----------CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee-----
Q 002086 615 -----------LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF----- 678 (969)
Q Consensus 615 -----------~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~----- 678 (969)
.+..+.+||..++++.........+..++|+|+|+++++++. .+.+||..+++.........
T Consensus 102 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~ 179 (337)
T d1pbyb_ 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAET 179 (337)
T ss_dssp EEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTT
T ss_pred CCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccc
Confidence 467899999999999888888888999999999999998864 47789887765433211100
Q ss_pred -----------------------------------------------------cccccCCCCCeEEEEEcCCCCceEEEE
Q 002086 679 -----------------------------------------------------QTKKKSSTRKITGFQFSPSNPSEVLVT 705 (969)
Q Consensus 679 -----------------------------------------------------~~~~~~h~~~It~l~fspd~~~~l~sg 705 (969)
......+...+..+.++|++ .+++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 258 (337)
T d1pbyb_ 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA 258 (337)
T ss_dssp BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE
T ss_pred eecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccc-eEEEEc
Confidence 00011233445566677765 344433
Q ss_pred eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCCC
Q 002086 706 SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 706 s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~~ 762 (969)
++.|++||..+....... .+...+.+++|+|||++|++++.|+.|+|||+.+.+
T Consensus 259 --~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 259 --YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp --ESEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred --cccEEEEECCCCcEEEEE-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 589999998776554443 345567899999999999999999999999999843
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.77 E-value=1.1e-16 Score=170.04 Aligned_cols=242 Identities=12% Similarity=0.156 Sum_probs=178.6
Q ss_pred CCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCE-EEEEECCCeEEEEeCCCceEEE
Q 002086 555 DDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDY-FISGSLDAKVRIWSISDRLVVD 631 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~-L~sgs~Dg~I~IWDl~~~~~~~ 631 (969)
..+..++|+| +++| ++++.++.|++||+.+++.+..+.....+..++|++ ++.+ ++++..++.+.+|+..+++...
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAG 110 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccc-ccccccccccccceeeecccccceeee
Confidence 3467899999 6766 577789999999999999999987777789999999 6665 5556677889999999999988
Q ss_pred EecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe-CCC
Q 002086 632 WTDLHEMVTAACYTPDGQNALI-GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS-ADS 709 (969)
Q Consensus 632 ~~~~~~~V~sv~fspdg~~Las-gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs-~Dg 709 (969)
.......+.+++|+|++..+++ +..++.+.+|+..+....... .+...+..+.++|++. .++++. .++
T Consensus 111 ~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~ 180 (301)
T d1l0qa2 111 TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV---------SVGRSPKGIAVTPDGT-KVYVANFDSM 180 (301)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---------ECCSSEEEEEECTTSS-EEEEEETTTT
T ss_pred eccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeec---------ccCCCceEEEeecccc-ceeeeccccc
Confidence 8888888999999999998765 556788999999988765432 2345678899999884 555554 456
Q ss_pred cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeE
Q 002086 710 RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE---DSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVS 786 (969)
Q Consensus 710 ~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~---Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s 786 (969)
.+.+|+....... ...........++|++++..++.++. ++.|++||+.++ +.......
T Consensus 181 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~------~~~~~~~~----------- 242 (301)
T d1l0qa2 181 SISVIDTVTNSVI-DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN------KITARIPV----------- 242 (301)
T ss_dssp EEEEEETTTTEEE-EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT------EEEEEEEC-----------
T ss_pred ccccccccceeee-ecccccCCcceeeccccccccccccccceeeeeeeeecCCC------eEEEEEcC-----------
Confidence 6777775544332 23334455778999999998876654 467999999873 21111100
Q ss_pred EeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCCcc-ccCCCCccccCCCCCCccccCC
Q 002086 787 VAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEGSP-AGHSRRLLPPLPKKTNKVERVP 852 (969)
Q Consensus 787 ~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~i~-~~~~~~~L~~~~~~s~~~~~~l 852 (969)
+..+...++||+|.+++ +...+..+..|...++++..++
T Consensus 243 ---------------------------~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 243 ---------------------------GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282 (301)
T ss_dssp ---------------------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ---------------------------CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 01123456799998774 6667788999988888766654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=5.1e-17 Score=185.90 Aligned_cols=339 Identities=11% Similarity=0.039 Sum_probs=229.8
Q ss_pred ccccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCC
Q 002086 435 YKDLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSS 514 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 514 (969)
++|..+++++.+|..|. .+..++|||||++|++++.|++|++||+.+++.....+
T Consensus 46 v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~------------------------ 100 (432)
T d1qksa2 46 LIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE------------------------ 100 (432)
T ss_dssp EEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE------------------------
T ss_pred EEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEE------------------------
Confidence 66889999999999884 69999999999999999999999999998765322100
Q ss_pred CCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEe-
Q 002086 515 PNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLF- 591 (969)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~- 591 (969)
+....+|.+.+.+..|+| +++| ++++.+++|+|||..+++++..+
T Consensus 101 --------------------------------i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~ 148 (432)
T d1qksa2 101 --------------------------------IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148 (432)
T ss_dssp --------------------------------EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred --------------------------------EecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeec
Confidence 112234666667777888 6664 78889999999999999988765
Q ss_pred -----------ecCCCeEEEEEecCCCCEE-EEEECCCeEEEEeCCCceEE--EEecCCCCEEEEEEccCCCEEEEEeC-
Q 002086 592 -----------AHNDYVTCIQFNPMDDDYF-ISGSLDAKVRIWSISDRLVV--DWTDLHEMVTAACYTPDGQNALIGSH- 656 (969)
Q Consensus 592 -----------~h~~~V~sv~fsp~~~~~L-~sgs~Dg~I~IWDl~~~~~~--~~~~~~~~V~sv~fspdg~~Lasgs~- 656 (969)
.+......+.++| ++..+ ++...++.|.+||..+.+.. ........+..++|+|+|+++++++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~ 227 (432)
T d1qksa2 149 TRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA 227 (432)
T ss_dssp CCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG
T ss_pred cCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccc
Confidence 2455677899999 66654 56677899999999886543 34455677899999999998887765
Q ss_pred CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE-eCCCcEEEEeCCcceEEEEeecCCCCeEEE
Q 002086 657 KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT-SADSRIRILDGLDIVHKFRGFRNTSSQISA 735 (969)
Q Consensus 657 dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg-s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl 735 (969)
++.+.++|..+.+........ ....+........+...+ ....+. ..++.|.+|....... ..+...+...
T Consensus 228 ~~~v~v~d~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~g-~~~~~~~lg~~~v~~~~~~~~~~----~~~~~~v~~~ 299 (432)
T d1qksa2 228 RNKLVVIDTKEGKLVAIEDTG---GQTPHPGRGANFVHPTFG-PVWATSHMGDDSVALIGTDPEGH----PDNAWKILDS 299 (432)
T ss_dssp GTEEEEEETTTTEEEEEEECS---SSSBCCTTCEEEEETTTE-EEEEEEBSSSSEEEEEECCTTTC----TTTBTSEEEE
T ss_pred cceEEEeecccceEEEEeccC---ccccccCcccceecCCCC-ceecccccCCceEEecccccccc----cccccEEEEE
Confidence 558899999888765443221 113344555555665544 333333 3478899998554321 2344568889
Q ss_pred EEeCCCCEEEEEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCC-Cc-ccCCCCCccEEEccccccc
Q 002086 736 AFNADGKYIISASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWP-GM-VKGEPPPTPVQTKKHAKRI 813 (969)
Q Consensus 736 ~fspdg~~LaSgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~-~~-i~G~~~~~~v~~~~~~~~~ 813 (969)
.++|++..+++++.+..+++|...+... +.... .++.++.. .+ ..+.+....+|........
T Consensus 300 ~~~~~g~~~~~~s~p~~~~lw~~~~~~~-------------~~~~~---~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l 363 (432)
T d1qksa2 300 FPALGGGSLFIKTHPNSQYLYVDATLNP-------------EAEIS---GSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI 363 (432)
T ss_dssp EECSCSCCCCEECCTTCSEEEEECTTCS-------------SHHHH---TCEEEEEGGGCCCSSSCCCEEEECHHHHHTC
T ss_pred EEcCCCCeEEEEecCCccceeecccCCC-------------CCCee---eEEEEEechhhcccccCCceEeccccccccc
Confidence 9999999999999999999998765321 11110 01111111 11 2334556666643322111
Q ss_pred --CC-CCcccccCCCCCCcc-----ccCCCCccccCCCCCCccccCCCCC
Q 002086 814 --SS-NPTSATSSPTKEGSP-----AGHSRRLLPPLPKKTNKVERVPSPP 855 (969)
Q Consensus 814 --~~-~~~~~~~SP~~~~i~-----~~~~~~~L~~~~~~s~~~~~~l~~p 855 (969)
+. ......|||+|.+++ +...++.+.+|...+.++.+.++.+
T Consensus 364 ~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 364 TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 11 123456999998762 2235667888988888876665554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=1.8e-16 Score=181.33 Aligned_cols=341 Identities=11% Similarity=-0.023 Sum_probs=226.2
Q ss_pred cCCCceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeE
Q 002086 309 SENGMWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVA 388 (969)
Q Consensus 309 ~~dg~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~ 388 (969)
+.+|. +.|||.+|++.+. .+..| ..+..+++..++..+++++.|..+..|.....+..............+++
T Consensus 39 ~d~g~-v~v~D~~t~~v~~-----~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 39 RDAGQ-IALIDGSTYEIKT-----VLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp TTTTE-EEEEETTTCCEEE-----EEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred cCCCE-EEEEECCCCcEEE-----EEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence 34344 7799999999854 33444 35899999888888888778887777764432222222222334566777
Q ss_pred EEeeecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecc-----------cccCEEEE
Q 002086 389 HSMSVKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQA-----------HEGSIWTI 457 (969)
Q Consensus 389 ~s~~~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~g-----------H~~~I~~l 457 (969)
+++.|++|...++.. ......+.+ ++..+++.++.+.. +.+....+
T Consensus 112 ~s~~~SpDG~~l~vs--------------~~~~~~v~i---------~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (432)
T d1qksa2 112 TSKMEGWEDKYAIAG--------------AYWPPQYVI---------MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 168 (432)
T ss_dssp ECCSTTCTTTEEEEE--------------EEETTEEEE---------EETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred EecccCCCCCEEEEE--------------cCCCCeEEE---------EeCccccceeeeccCCccccceeccCCCceeEE
Confidence 777777777653321 112223333 34444455544443 45667788
Q ss_pred EEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCccccc
Q 002086 458 KFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVP 536 (969)
Q Consensus 458 ~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 536 (969)
.++|+|.++ ++...++.|.+||..+++.....
T Consensus 169 ~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~----------------------------------------------- 201 (432)
T d1qksa2 169 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTT----------------------------------------------- 201 (432)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSSEEEEE-----------------------------------------------
T ss_pred EECCCCCEEEEEEccCCeEEEEEccCCCcceEE-----------------------------------------------
Confidence 999998865 56667899999998876543311
Q ss_pred ceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECCCCcEEEEee------cCCCeEEEEEecCCCC
Q 002086 537 ETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-MDKTVRLWDMETKSCLKLFA------HNDYVTCIQFNPMDDD 608 (969)
Q Consensus 537 ~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~t~~~i~~~~------h~~~V~sv~fsp~~~~ 608 (969)
...+...+.++.|+| +.++++++ .++.|.++|..+++.+..+. |........+.. .+.
T Consensus 202 -------------~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~ 267 (432)
T d1qksa2 202 -------------EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGP 267 (432)
T ss_dssp -------------EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEE
T ss_pred -------------EEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCc
Confidence 112455678999999 67666665 56689999999999888773 333344444433 333
Q ss_pred EEEEEE-CCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCC
Q 002086 609 YFISGS-LDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTR 687 (969)
Q Consensus 609 ~L~sgs-~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~ 687 (969)
...+.. .++.|.+|+..... ...+...+....++|++..+++++.++..++|+...... +..
T Consensus 268 ~~~~~~lg~~~v~~~~~~~~~---~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~--------------~~~ 330 (432)
T d1qksa2 268 VWATSHMGDDSVALIGTDPEG---HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP--------------EAE 330 (432)
T ss_dssp EEEEEBSSSSEEEEEECCTTT---CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS--------------SHH
T ss_pred eecccccCCceEEeccccccc---ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCC--------------CCC
Confidence 444433 37889999876543 234556788999999999999999999999998765432 111
Q ss_pred CeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEe-----CCCcEEEEEcCCCC
Q 002086 688 KITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISAS-----EDSQVYVWKREEHR 762 (969)
Q Consensus 688 ~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs-----~Dg~I~IWdl~t~~ 762 (969)
....+++ |++ ..+++++.|+.+++|+..+.... ..+...+.+++|+|||++|+.+. .+|.|.|||..+.+
T Consensus 331 ~~~sv~v-pDg-~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k 405 (432)
T d1qksa2 331 ISGSVAV-FDI-KAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 405 (432)
T ss_dssp HHTCEEE-EEG-GGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred eeeEEEE-Eec-hhhcccccCCceEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence 1223344 776 78999999999999996543221 13455688999999999886654 46889999999853
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.72 E-value=2.7e-16 Score=178.86 Aligned_cols=348 Identities=9% Similarity=-0.003 Sum_probs=221.2
Q ss_pred ceeEEEecCCCceeeeeehhhccCCCcceeeeecccccccccCCCCcccccccccccccccccccccccceeeeeEEEee
Q 002086 313 MWNKLSDLQTGKQLTMEEFEKSVGHSPVVKELMRRENVNRINDSAGKFSANSYLSKSLRMSKRRGAALLKNIKGVAHSMS 392 (969)
Q Consensus 313 ~~~~lWd~~tgk~l~~~E~~~~~GHs~~V~~l~~~~~~~~~~t~s~d~~v~~~~~~~~~~~k~~~~~~l~~v~gv~~s~~ 392 (969)
..++|||++|++.+. .+.+|. .+..+++..++..+++++.|..+..|.....+..............+.++++.
T Consensus 42 g~v~vwD~~t~~~~~-----~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~ 115 (426)
T d1hzua2 42 GQIALVDGDSKKIVK-----VIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKF 115 (426)
T ss_dssp TEEEEEETTTCSEEE-----EEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCS
T ss_pred CEEEEEECCCCcEEE-----EEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeee
Confidence 347899999998854 344553 58899998888888887888877777644333222222233445667777777
Q ss_pred ecCCccccCCCCcccchHHHHHHhhccccCcceEEEccCCCcccccccceeeeEecccccCEEEEEEeCCCC-EEEEEeC
Q 002086 393 VKGDKECINPNPLLGDQREQKEQKQNKNVSNHWVKVRQSGKSYKDLSALHLCQEIQAHEGSIWTIKFSLDAR-FLASAGE 471 (969)
Q Consensus 393 ~~gd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~l~dl~~~~l~~~L~gH~~~I~~l~fSpDg~-~LaTgs~ 471 (969)
|++|...++.. ....... .+++.....+.+.+.+|...+..+.|.+++. ..+.++.
T Consensus 116 ~spDG~~l~v~--------------~~~~~~v---------~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 172 (426)
T d1hzua2 116 KGYEDRYTIAG--------------AYWPPQF---------AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 172 (426)
T ss_dssp TTCTTTEEEEE--------------EEESSEE---------EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred ecCCCCEEEEe--------------ecCCCeE---------EEEcCCccceeEEeeccCCCccceeecCCCceeEEEECC
Confidence 77776553221 1111112 2446777778888888888888888888776 4456667
Q ss_pred CCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEec
Q 002086 472 DRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFI 551 (969)
Q Consensus 472 DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~ 551 (969)
|+...+|.......+...... ..........
T Consensus 173 d~~~~~~~~~~~~~i~~~~~~-------------------------------------------------~~~~~~~~~~ 203 (426)
T d1hzua2 173 EHPEFIVNVKETGKVLLVNYK-------------------------------------------------DIDNLTVTSI 203 (426)
T ss_dssp SSSEEEEEETTTTEEEEEECS-------------------------------------------------SSSSCEEEEE
T ss_pred CCCEEEEecCCCCeEEEEEec-------------------------------------------------cccceeeEEe
Confidence 777666655432222211100 0001112344
Q ss_pred cCCCCEEEEEecC-CcEEEEE-eCCCcEEEEECCCCcEEEEee---cCCCeEEEEEecCCCCEEE--EEECCCeEEEEeC
Q 002086 552 GHLDDVLDLSWSR-SHLLLSS-SMDKTVRLWDMETKSCLKLFA---HNDYVTCIQFNPMDDDYFI--SGSLDAKVRIWSI 624 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~t~~~i~~~~---h~~~V~sv~fsp~~~~~L~--sgs~Dg~I~IWDl 624 (969)
++...+..+.|++ +++++++ ..+..+.+|+..+++.+..+. +......+.+.......+. +.+.|+.+.+|+.
T Consensus 204 ~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~ 283 (426)
T d1hzua2 204 GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGT 283 (426)
T ss_dssp ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEEC
T ss_pred ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeec
Confidence 6788899999999 6665555 466789999999999988773 2333344454441222222 3345788888887
Q ss_pred CCc--------eEEEEecCCCCEEEEEEccCCCEEEE-------EeCCCcEEEEEcCCCceeeeee-eeecccccCCCCC
Q 002086 625 SDR--------LVVDWTDLHEMVTAACYTPDGQNALI-------GSHKGSCRLYSIEDSKLHQLNQ-VDFQTKKKSSTRK 688 (969)
Q Consensus 625 ~~~--------~~~~~~~~~~~V~sv~fspdg~~Las-------gs~dg~I~IwDl~~~~~~~~~~-~~~~~~~~~h~~~ 688 (969)
... ....+..|...+..++|+|++++|++ +..+++|+|||+.+++...... .........+...
T Consensus 284 ~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~r 363 (426)
T d1hzua2 284 DPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR 363 (426)
T ss_dssp CTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCC
T ss_pred cccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCcc
Confidence 542 34456677888999999999999995 4567899999999887543221 0011122456778
Q ss_pred eEEEEEcCCCCceEEEE----eCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEE
Q 002086 689 ITGFQFSPSNPSEVLVT----SADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYI 744 (969)
Q Consensus 689 It~l~fspd~~~~l~sg----s~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~L 744 (969)
+..++|+|+|...++++ +.++.|+|||..+........... .++|+|+|.
T Consensus 364 v~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 364 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp EEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred EEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence 99999999995454544 357889999987765433322222 235777664
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.69 E-value=6.8e-16 Score=166.90 Aligned_cols=238 Identities=11% Similarity=0.014 Sum_probs=165.3
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCccccc
Q 002086 457 IKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHVP 536 (969)
Q Consensus 457 l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 536 (969)
++|+++++||++++.|++|.|||+.+++++..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~--------------------------------------------- 36 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--------------------------------------------- 36 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC---------------------------------------------
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc---------------------------------------------
Confidence 57899999999999999999999999988764321
Q ss_pred ceeeecCCCceeEeccCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEeec-------CCCeEEEEEecCCC
Q 002086 537 ETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLFAH-------NDYVTCIQFNPMDD 607 (969)
Q Consensus 537 ~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~~h-------~~~V~sv~fsp~~~ 607 (969)
.|...+.+++|+| ++++ +++..++.|++||+.+++.+..+.. ...+..++|+| ++
T Consensus 37 ---------------~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~-DG 100 (346)
T d1jmxb_ 37 ---------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DG 100 (346)
T ss_dssp ---------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TS
T ss_pred ---------------CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec-CC
Confidence 2444567899999 6665 5667899999999999999877632 23467899999 89
Q ss_pred CEEEEEE------------CCCeEEEEeCCCceEE---EEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 002086 608 DYFISGS------------LDAKVRIWSISDRLVV---DWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQ 672 (969)
Q Consensus 608 ~~L~sgs------------~Dg~I~IWDl~~~~~~---~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~ 672 (969)
.++++++ .++.+.+||..+++.. ........+..+.+++++..++.+ +.+.+|++.+++...
T Consensus 101 ~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 177 (346)
T d1jmxb_ 101 KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTV 177 (346)
T ss_dssp SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEE
T ss_pred CEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEE
Confidence 8887765 4778999998775432 222233445556666666555432 446666665544322
Q ss_pred eeeee------------------------------------------------------------ecccccCCCCCeEEE
Q 002086 673 LNQVD------------------------------------------------------------FQTKKKSSTRKITGF 692 (969)
Q Consensus 673 ~~~~~------------------------------------------------------------~~~~~~~h~~~It~l 692 (969)
..... .......+...+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (346)
T d1jmxb_ 178 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG 257 (346)
T ss_dssp EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred EEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEE
Confidence 11100 000112345567777
Q ss_pred EEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 693 QFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 693 ~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
.+++++ ..++... ++.|++||.......... .....+.+++|+|||++|++++.|+.|+|||+.+.
T Consensus 258 ~~~~~~-~~~~~~~-~~~v~v~d~~~~~~~~~~-~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~ 323 (346)
T d1jmxb_ 258 LRSPKD-PNQIYGV-LNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323 (346)
T ss_dssp EECSSC-TTEEEEE-ESEEEEEETTTTEEEEEE-ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EEeCCC-CEEEEec-CCeEEEEECCCCcEEEEE-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC
Confidence 888877 3444443 467999997765443332 33456889999999999999999999999999984
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=2e-14 Score=154.95 Aligned_cols=253 Identities=14% Similarity=0.152 Sum_probs=172.7
Q ss_pred ccccCEEEEEEeCCCCEEEEEe-CCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASAG-EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTgs-~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
.|.+.|.+|+|+|||++|++++ .|+.|++|++.........
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~-------------------------------------- 75 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-------------------------------------- 75 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--------------------------------------
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE--------------------------------------
Confidence 5889999999999999885554 5899999998753221100
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC-CCcEEEEECCCCcEEEEe---ecCCCeEEEEE
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM-DKTVRLWDMETKSCLKLF---AHNDYVTCIQF 602 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~-DgtV~IWDl~t~~~i~~~---~h~~~V~sv~f 602 (969)
.....+...+..++|+| +++|++++. ++.|.+|+.......... .+...+.++.|
T Consensus 76 --------------------~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 135 (333)
T d1ri6a_ 76 --------------------AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANI 135 (333)
T ss_dssp --------------------EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEE
T ss_pred --------------------eeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEe
Confidence 01112344566799999 788888874 778999998877655443 57778899999
Q ss_pred ecCCCCEEEEEEC-CCeEEEEeCCCceEE-------EEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceee-
Q 002086 603 NPMDDDYFISGSL-DAKVRIWSISDRLVV-------DWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQ- 672 (969)
Q Consensus 603 sp~~~~~L~sgs~-Dg~I~IWDl~~~~~~-------~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~- 672 (969)
+| +++++++++. +..|.+|+....... ...........++|++++.+++... ..+...+|++.......
T Consensus 136 s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 214 (333)
T d1ri6a_ 136 SP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 214 (333)
T ss_dssp CT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred ee-cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccccee
Confidence 99 8888777764 467999998764321 1223345678999999999887654 56678888875543221
Q ss_pred -eeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc--ce-EEEEeecCCCCeEEEEEeCCCCEEEEEe
Q 002086 673 -LNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD--IV-HKFRGFRNTSSQISAAFNADGKYIISAS 748 (969)
Q Consensus 673 -~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~--~~-~~~~~~~~~~~V~sl~fspdg~~LaSgs 748 (969)
...................+++++++...++++..++.+.+|+... .. ...........+..++|+|||++|++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~ 294 (333)
T d1ri6a_ 215 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG 294 (333)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred eeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEE
Confidence 1111111112234456778899999966667777888999998442 22 2222233345567899999999988776
Q ss_pred C-CCcEEEEEcCC
Q 002086 749 E-DSQVYVWKREE 760 (969)
Q Consensus 749 ~-Dg~I~IWdl~t 760 (969)
. ++.|.||+++.
T Consensus 295 ~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 295 QKSHHISVYEIVG 307 (333)
T ss_dssp TTTCEEEEEEEET
T ss_pred CCCCeEEEEEEEC
Confidence 5 58899997753
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=1.1e-14 Score=156.57 Aligned_cols=215 Identities=12% Similarity=0.087 Sum_probs=158.8
Q ss_pred ccccccceeeeEeccc--ccCEEEEEEeCCCCEE-EEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCC
Q 002086 435 YKDLSALHLCQEIQAH--EGSIWTIKFSLDARFL-ASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLD 511 (969)
Q Consensus 435 l~dl~~~~l~~~L~gH--~~~I~~l~fSpDg~~L-aTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 511 (969)
++|+++.+++.++..+ ...+.+++|+|||++| ++++.++.|.+||+.+++.+........
T Consensus 15 v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~----------------- 77 (337)
T d1pbyb_ 15 VIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP----------------- 77 (337)
T ss_dssp EEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT-----------------
T ss_pred EEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC-----------------
Confidence 5588888888888654 4568899999999987 5667899999999999988775432110
Q ss_pred CCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe------------CCCcEE
Q 002086 512 GSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS------------MDKTVR 578 (969)
Q Consensus 512 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs------------~DgtV~ 578 (969)
..+...+..++|+| +++++++. .+..+.
T Consensus 78 ---------------------------------------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 118 (337)
T d1pbyb_ 78 ---------------------------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118 (337)
T ss_dssp ---------------------------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred ---------------------------------------cccccceeeEEEcCCCcEEEEeecCCcceeeecccccccee
Confidence 01122233577777 56666554 467899
Q ss_pred EEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE---------------------------
Q 002086 579 LWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD--------------------------- 631 (969)
Q Consensus 579 IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~--------------------------- 631 (969)
+||..+++.+..+.+...+.+++|+| ++.++++++. .+.+||..++++..
T Consensus 119 ~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
T d1pbyb_ 119 LYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp EEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred eccccCCeEEEeccccCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeecccccc
Confidence 99999999999998888899999999 8888888764 46678775543221
Q ss_pred ----------------------------------------EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 002086 632 ----------------------------------------WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLH 671 (969)
Q Consensus 632 ----------------------------------------~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~ 671 (969)
...+...+..+.+++++.+++.+ ++.|++||+.+++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~ 273 (337)
T d1pbyb_ 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI 273 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE
T ss_pred ceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEE
Confidence 11222345566777787777665 588999999998876
Q ss_pred eeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcce
Q 002086 672 QLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 672 ~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~ 720 (969)
... .+...+.+++|+|+| .+|++++.++.|++||..+..
T Consensus 274 ~~~---------~~~~~~~~~~~s~dG-~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 274 KRV---------PLPHSYYSVNVSTDG-STVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEE---------ECSSCCCEEEECTTS-CEEEEESBSSEEEEEETTTCC
T ss_pred EEE---------cCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCc
Confidence 542 234568899999998 788999999999999976543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.53 E-value=3.7e-12 Score=139.80 Aligned_cols=276 Identities=10% Similarity=-0.055 Sum_probs=169.2
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEe----------CCCcEEEEecccceEEEeecCCccCcccccccCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG----------EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDK 506 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs----------~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~ 506 (969)
|.++++.+.++.+|... .++|+|||++|++++ .++.|.|||..+++.+.....+..............
T Consensus 53 D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~ 130 (373)
T d2madh_ 53 DAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMN 130 (373)
T ss_pred ECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcE
Confidence 55666777777777655 799999999998875 467899999999998876554333222211111111
Q ss_pred CccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEECCC
Q 002086 507 ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-S-HLLLSSSMDKTVRLWDMET 584 (969)
Q Consensus 507 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~-~~L~Sgs~DgtV~IWDl~t 584 (969)
....++......... . .....++.... .....+.....++.+++ + ..+++.+.|+++.+|+...
T Consensus 131 ~~s~dg~~~~v~~~~-------~----~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~ 196 (373)
T d2madh_ 131 ANTPNNADLLFFQFA-------A----GPAVGLVVQGG---SSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG 196 (373)
T ss_pred EEEeCCCcEEEEEEc-------C----CCceEEeeccC---CeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCC
Confidence 111111110000000 0 00001111111 12234445567888888 3 5678899999999999999
Q ss_pred CcEEEEee-------cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe---cCCCCEEEEEEccCCCEEEEE
Q 002086 585 KSCLKLFA-------HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT---DLHEMVTAACYTPDGQNALIG 654 (969)
Q Consensus 585 ~~~i~~~~-------h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~---~~~~~V~sv~fspdg~~Lasg 654 (969)
+....... +......+.+.+ +..++..+.++.+.+|+.......... ........+.+.|.+...+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (373)
T d2madh_ 197 GAAGAGLVGAMLTAAQNLLTQPAQANK--SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred ceeeEEEeeeccccCccceeeeEEECC--CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEE
Confidence 88776541 122233444443 456667778999999999887654332 233445556666666555555
Q ss_pred eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEE
Q 002086 655 SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQIS 734 (969)
Q Consensus 655 s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~s 734 (969)
+.++...++ +...+ ..++....++.|.+||......... ..+...+..
T Consensus 275 ~~d~~~~~~------------------------------~~~~~-~~~~~~~~~~~v~~~d~~t~~~~~~-~~~~~~~~~ 322 (373)
T d2madh_ 275 LKSSDGIYL------------------------------LTSEQ-SAWKLHAAAKEVTSVTGLVGQTSSQ-ISLGHDVDA 322 (373)
T ss_pred ecCCCeEEE------------------------------ecCCC-ceEEeecCCCeEEEEECCCCcEEEE-ecCCCCeeE
Confidence 555433222 12222 5677788889999999766544332 334566889
Q ss_pred EEEeCCCCE--EEEEeCCCcEEEEEcCCCC
Q 002086 735 AAFNADGKY--IISASEDSQVYVWKREEHR 762 (969)
Q Consensus 735 l~fspdg~~--LaSgs~Dg~I~IWdl~t~~ 762 (969)
++|+|||+. +++++.|+.|+|||+.+++
T Consensus 323 ~a~spDG~~~l~vt~~~d~~v~v~D~~tg~ 352 (373)
T d2madh_ 323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 999999984 4688999999999999854
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.53 E-value=2.1e-12 Score=141.78 Aligned_cols=301 Identities=8% Similarity=-0.075 Sum_probs=191.2
Q ss_pred ecccccCEEEEEEeCCCCEEEEE-----eCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCccc
Q 002086 447 IQAHEGSIWTIKFSLDARFLASA-----GEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEK 521 (969)
Q Consensus 447 L~gH~~~I~~l~fSpDg~~LaTg-----s~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~ 521 (969)
..+|.+++.+++++|||+.++.. +.++.|.+||..+++.+..+.
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~------------------------------- 64 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN------------------------------- 64 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe-------------------------------
Confidence 34689999999999999988764 234679999999888776422
Q ss_pred ccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe----------CCCcEEEEECCCCcEEEE
Q 002086 522 KKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS----------MDKTVRLWDMETKSCLKL 590 (969)
Q Consensus 522 ~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs----------~DgtV~IWDl~t~~~i~~ 590 (969)
.+.. ..+.|+| +++|++++ .++.|.+||..+++.+..
T Consensus 65 ------------------------------~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~ 112 (373)
T d2madh_ 65 ------------------------------GGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD 112 (373)
T ss_pred ------------------------------CCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEE
Confidence 2222 2578888 67777664 468899999999998877
Q ss_pred ee-cCCC-------eEEEEEecCCCCEEEEE--ECCCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEE-EEEeCCCc
Q 002086 591 FA-HNDY-------VTCIQFNPMDDDYFISG--SLDAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNA-LIGSHKGS 659 (969)
Q Consensus 591 ~~-h~~~-------V~sv~fsp~~~~~L~sg--s~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~L-asgs~dg~ 659 (969)
+. +... ...+.|++ ++..++.. ..++.+.+|+....+..... ....++.++|+|+.+ ++.+.|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~~v~~~~dg~ 188 (373)
T d2madh_ 113 IELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTCYHIHPGAPSTFYLLCAQGG 188 (373)
T ss_pred EecCCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCeEEEEe---ccceeEEEecCCCcEEEEEcCCCe
Confidence 62 2222 34578888 67655544 34567889998877655433 346788999998765 57889999
Q ss_pred EEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE--EeecC---------
Q 002086 660 CRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF--RGFRN--------- 728 (969)
Q Consensus 660 I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~--~~~~~--------- 728 (969)
+.+|+.............. ...........+.+.++ ..++..+.++.+++|+........ .....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (373)
T d2madh_ 189 LAKTDHAGGAAGAGLVGAM--LTAAQNLLTQPAQANKS--GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW 264 (373)
T ss_pred EEEEEcCCceeeEEEeeec--cccCccceeeeEEECCC--ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeee
Confidence 9999999887654432211 11122223344555554 466777788999999855432111 11111
Q ss_pred -CCCeEEEEEeCCCCEEE----------EEeCCCcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccC
Q 002086 729 -TSSQISAAFNADGKYII----------SASEDSQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKG 797 (969)
Q Consensus 729 -~~~V~sl~fspdg~~La----------Sgs~Dg~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G 797 (969)
......+++++++..++ +...++.|.+||+.+++. +....
T Consensus 265 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~------~~~~~----------------------- 315 (373)
T d2madh_ 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT------SSQIS----------------------- 315 (373)
T ss_pred ccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE------EEEec-----------------------
Confidence 11223345555555443 344455666777665321 11100
Q ss_pred CCCCccEEEcccccccCCCCcccccCCCCCC--ccccCCCCccccCCCCCCccccCCCCCCCCcccc
Q 002086 798 EPPPTPVQTKKHAKRISSNPTSATSSPTKEG--SPAGHSRRLLPPLPKKTNKVERVPSPPEEELSLI 862 (969)
Q Consensus 798 ~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~--i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l~~i 862 (969)
.+..+....+||+|.. +++...+..++.|...++++.+.+..+...+..+
T Consensus 316 ---------------~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l 367 (373)
T d2madh_ 316 ---------------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL 367 (373)
T ss_pred ---------------CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEE
Confidence 1112334567999874 4577888899999999998888776665555444
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=2.2e-12 Score=138.58 Aligned_cols=207 Identities=15% Similarity=0.146 Sum_probs=144.2
Q ss_pred ccCCCCEEEEEecC-CcEEEEE-eCCCcEEEEECCCCcEE----EEeecCCCeEEEEEecCCCCEEEEEEC-CCeEEEEe
Q 002086 551 IGHLDDVLDLSWSR-SHLLLSS-SMDKTVRLWDMETKSCL----KLFAHNDYVTCIQFNPMDDDYFISGSL-DAKVRIWS 623 (969)
Q Consensus 551 ~gH~~~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~t~~~i----~~~~h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWD 623 (969)
..|.+.+..|+|+| +++|+++ ..|+.|++|++...... ....+...+..++|+| ++++|++++. ++.|.+|+
T Consensus 33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~ 111 (333)
T d1ri6a_ 33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTR 111 (333)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeec
Confidence 35778899999999 6777555 45899999999865432 2234566788999999 9998888875 67899998
Q ss_pred CCCceEE---EEecCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCC
Q 002086 624 ISDRLVV---DWTDLHEMVTAACYTPDGQNALIGSH-KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNP 699 (969)
Q Consensus 624 l~~~~~~---~~~~~~~~V~sv~fspdg~~Lasgs~-dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~ 699 (969)
....... ....+...+.++.++|+++++++++. +..|.+|+.............. ...........++|++++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~g~~p~~i~~~~~~~ 189 (333)
T d1ri6a_ 112 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE--VTTVEGAGPRHMVFHPNEQ 189 (333)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--EECSTTCCEEEEEECTTSS
T ss_pred cccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee--eeeecCCCccEEEEeccce
Confidence 8766543 34455677889999999999888764 5579999987765433222111 1133456678899999985
Q ss_pred ceEEEEeCCCcEEEEeCCcc----eEEEEe------ecCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEEcCC
Q 002086 700 SEVLVTSADSRIRILDGLDI----VHKFRG------FRNTSSQISAAFNADGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 700 ~~l~sgs~Dg~I~IwD~~~~----~~~~~~------~~~~~~V~sl~fspdg~~LaSgs-~Dg~I~IWdl~t 760 (969)
..+.+....+...+|+.... ...... .........+.+++|+++++... .++.+.+|++..
T Consensus 190 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~ 261 (333)
T d1ri6a_ 190 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 261 (333)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcC
Confidence 55556667778888874321 111111 12234456788999999776654 567899999976
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.51 E-value=6.3e-13 Score=144.68 Aligned_cols=266 Identities=13% Similarity=0.047 Sum_probs=165.9
Q ss_pred cccccceeeeEecccccCEEEEEEeCCCCEEEEE----------eCCCcEEEEecccceEEEeecCCccCcccccccCCC
Q 002086 436 KDLSALHLCQEIQAHEGSIWTIKFSLDARFLASA----------GEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSD 505 (969)
Q Consensus 436 ~dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTg----------s~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~ 505 (969)
+|..+++++.++..+..+ .++|||||++|+.+ +.|+.|++||+.+++.+..........
T Consensus 33 ~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~--------- 101 (355)
T d2bbkh_ 33 IDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR--------- 101 (355)
T ss_dssp EETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC---------
T ss_pred EECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce---------
Confidence 466777788888776555 79999999988754 458899999999998876433211000
Q ss_pred CCccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe--CCCcEEEEEC
Q 002086 506 KASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS--MDKTVRLWDM 582 (969)
Q Consensus 506 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs--~DgtV~IWDl 582 (969)
.........+.|++ +++++.++ .+..+.+|+.
T Consensus 102 ---------------------------------------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~ 136 (355)
T d2bbkh_ 102 ---------------------------------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL 136 (355)
T ss_dssp ---------------------------------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred ---------------------------------------------eecCCCCceEEEecCCCeeEEecCCCCceeeeeec
Confidence 00111223477888 66666654 5678999999
Q ss_pred CCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEE-E------ecCCCCEEEEEEccCCCEEEEEe
Q 002086 583 ETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVD-W------TDLHEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 583 ~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~-~------~~~~~~V~sv~fspdg~~Lasgs 655 (969)
.+++.+..+........... ....+++.+.|+...++......... . ..+...+....+.+++..++.++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (355)
T d2bbkh_ 137 EGKAFKRMLDVPDCYHIFPT---APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT 213 (355)
T ss_dssp TTTEEEEEEECCSEEEEEEE---ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB
T ss_pred CCCcEeeEEecCCcceEeec---CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEec
Confidence 99998887754333222111 23445555566665555543322111 1 11223355667888889999999
Q ss_pred CCCcEEEEEcCCCceeeeeeeeecc----cccCCCCCeEEEEEcCCCCceEEEEeCC----------CcEEEEeCCcceE
Q 002086 656 HKGSCRLYSIEDSKLHQLNQVDFQT----KKKSSTRKITGFQFSPSNPSEVLVTSAD----------SRIRILDGLDIVH 721 (969)
Q Consensus 656 ~dg~I~IwDl~~~~~~~~~~~~~~~----~~~~h~~~It~l~fspd~~~~l~sgs~D----------g~I~IwD~~~~~~ 721 (969)
.++.+++|++..+............ ...........+++++++ ..++....+ ..|.+||..+...
T Consensus 214 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~ 292 (355)
T d2bbkh_ 214 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292 (355)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred CCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCC-CeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence 9999999999987654322211100 001111233457889988 444444322 3699999765433
Q ss_pred EEEeecCCCCeEEEEEeCCCC--EEEEEeCCCcEEEEEcCCCC
Q 002086 722 KFRGFRNTSSQISAAFNADGK--YIISASEDSQVYVWKREEHR 762 (969)
Q Consensus 722 ~~~~~~~~~~V~sl~fspdg~--~LaSgs~Dg~I~IWdl~t~~ 762 (969)
.... .....+.+++|+|||+ ++++++.|+.|+|||+.+++
T Consensus 293 ~~~~-~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 293 LAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp EEEE-EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEe-cCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence 2222 1234477899999997 45677789999999999853
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.45 E-value=1.5e-12 Score=140.16 Aligned_cols=280 Identities=9% Similarity=-0.018 Sum_probs=172.1
Q ss_pred EEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEE-EEEECCCeEEEEeCCCceEEEEecC
Q 002086 560 LSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYF-ISGSLDAKVRIWSISDRLVVDWTDL 635 (969)
Q Consensus 560 l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L-~sgs~Dg~I~IWDl~~~~~~~~~~~ 635 (969)
++|++ +++|++++.|++|.+||+.+++++.++ .|...+.+++|+| ++.++ +++..++.|++||+.+++.+.....
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 45777 789999999999999999999999876 4567889999999 88876 5556789999999999987765443
Q ss_pred C-------CCEEEEEEccCCCEEEEEe------------CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 636 H-------EMVTAACYTPDGQNALIGS------------HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 636 ~-------~~V~sv~fspdg~~Lasgs------------~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
. ..+..++|+|||++++++. .++.+.+|+..+++....... ......+..+.+++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 154 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT------FPMPRQVYLMRAAD 154 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE------EECCSSCCCEEECT
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe------eeccCceEEEEecC
Confidence 2 2356789999999988765 467788898887664332211 12233455566666
Q ss_pred CCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCC--------------------------CEEEEEeCC
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADG--------------------------KYIISASED 750 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg--------------------------~~LaSgs~D 750 (969)
++ .+++. +..+.+|+..+......... ......+.++|++ ..++++..+
T Consensus 155 ~~--~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (346)
T d1jmxb_ 155 DG--SLYVA--GPDIYKMDVKTGKYTVALPL-RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 229 (346)
T ss_dssp TS--CEEEE--SSSEEEECTTTCCEEEEECS-TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred CC--EEEEe--CCcceEEEccCCCEEEEEec-CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCC
Confidence 65 34433 35688888654333222211 1112223333433 334445556
Q ss_pred CcEEEEEcCCCCccCCCceeEEecc-cCCceeeeeeEEeecCCCcccCCCCCccEEEcccccc-----cCCCCcccccCC
Q 002086 751 SQVYVWKREEHRNASTGKRAIITTR-NHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKR-----ISSNPTSATSSP 824 (969)
Q Consensus 751 g~I~IWdl~t~~~~~t~k~~~~~~~-~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~-----~~~~~~~~~~SP 824 (969)
..+.+|++.++ ........ ....+....+ ......+.........+|.....+. .+..+...++||
T Consensus 230 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~ 301 (346)
T d1jmxb_ 230 YGYLSVDLKTG------KTHTQEFADLTELYFTGLR--SPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDK 301 (346)
T ss_dssp EEEEEEETTTC------CEEEEEEEECSSCEEEEEE--CSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECS
T ss_pred ceEEEEECCCC------ceEEEEeecccceeEEEEE--eCCCCEEEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcC
Confidence 66788887763 22121111 1111111110 0000111111112233333322221 234566788999
Q ss_pred CCCCccccCCCCccccCCCCCCccccCCCCCCCCc
Q 002086 825 TKEGSPAGHSRRLLPPLPKKTNKVERVPSPPEEEL 859 (969)
Q Consensus 825 ~~~~i~~~~~~~~L~~~~~~s~~~~~~l~~pee~l 859 (969)
+|.+++.++.++.+..|...+.+...++..|..++
T Consensus 302 DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~~ 336 (346)
T d1jmxb_ 302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336 (346)
T ss_dssp SSSCEEEESBSSEEEEEETTTTEEEEEEECSSSCC
T ss_pred CCCEEEEEeCCCcEEEEECccCCEEEEEECCCCCc
Confidence 99999999999999999999888777776666553
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.34 E-value=1.6e-11 Score=133.20 Aligned_cols=280 Identities=13% Similarity=0.038 Sum_probs=173.2
Q ss_pred EEEEeCCCCEEEEEe-----CCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 456 TIKFSLDARFLASAG-----EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 456 ~l~fSpDg~~LaTgs-----~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
-.+.+|||+.++... .+..|.+||..+++.+..+.
T Consensus 6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~---------------------------------------- 45 (355)
T d2bbkh_ 6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID---------------------------------------- 45 (355)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE----------------------------------------
Confidence 345689999887653 46679999999988776322
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEE----------eCCCcEEEEECCCCcEEEEee-------
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSS----------SMDKTVRLWDMETKSCLKLFA------- 592 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sg----------s~DgtV~IWDl~t~~~i~~~~------- 592 (969)
.+.. ..++|+| +++|++. ..|+.|++||+.+++.+..+.
T Consensus 46 ---------------------~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~ 102 (355)
T d2bbkh_ 46 ---------------------GGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 102 (355)
T ss_dssp ---------------------ECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred ---------------------CCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCccee
Confidence 2222 2578998 6666543 458899999999999887662
Q ss_pred -cCCCeEEEEEecCCCCEEEEEE--CCCeEEEEeCCCceEEEEecCCCCE--------EEEEEccCCCEEEEEe-CCCcE
Q 002086 593 -HNDYVTCIQFNPMDDDYFISGS--LDAKVRIWSISDRLVVDWTDLHEMV--------TAACYTPDGQNALIGS-HKGSC 660 (969)
Q Consensus 593 -h~~~V~sv~fsp~~~~~L~sgs--~Dg~I~IWDl~~~~~~~~~~~~~~V--------~sv~fspdg~~Lasgs-~dg~I 660 (969)
.......++|+| ++.+++.+. .+..+.+|+..+++.+......... ..+.+++++..+++.. .++.+
T Consensus 103 ~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~ 181 (355)
T d2bbkh_ 103 LVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 181 (355)
T ss_dssp CBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred ecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeE
Confidence 123346789999 888877765 4578999999999887665544322 2344555555444322 23334
Q ss_pred EEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-Eeec-C----------
Q 002086 661 RLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-RGFR-N---------- 728 (969)
Q Consensus 661 ~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-~~~~-~---------- 728 (969)
.+++..... ..+...+....+.+++ ..++.++.++.+++|+........ .... +
T Consensus 182 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (355)
T d2bbkh_ 182 EITHTEVFH-------------PEDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 247 (355)
T ss_dssp EEEECCCCS-------------CTTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred EEEeccccc-------------ceecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeee
Confidence 444433222 2233344455666665 678888999999999965432111 1100 0
Q ss_pred CCCeEEEEEeCCCCEEEEEeCC----------CcEEEEEcCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCC
Q 002086 729 TSSQISAAFNADGKYIISASED----------SQVYVWKREEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGE 798 (969)
Q Consensus 729 ~~~V~sl~fspdg~~LaSgs~D----------g~I~IWdl~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~ 798 (969)
......+++++++.+++....+ ..|.+||..+++.+ .....
T Consensus 248 p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~------~~~~~----------------------- 298 (355)
T d2bbkh_ 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL------AKFEM----------------------- 298 (355)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE------EEEEE-----------------------
T ss_pred ccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEE------EEecC-----------------------
Confidence 1122347888888887766544 35888888874221 11100
Q ss_pred CCCccEEEcccccccCCCCcccccCCCCCC--ccccCCCCccccCCCCCCccccCCCCCCC
Q 002086 799 PPPTPVQTKKHAKRISSNPTSATSSPTKEG--SPAGHSRRLLPPLPKKTNKVERVPSPPEE 857 (969)
Q Consensus 799 ~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~--i~~~~~~~~L~~~~~~s~~~~~~l~~pee 857 (969)
+..+....+||+|.. +++...+..++.|...+++..+++..+-.
T Consensus 299 ---------------~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~ 344 (355)
T d2bbkh_ 299 ---------------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 344 (355)
T ss_dssp ---------------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred ---------------CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCC
Confidence 001223456888863 44566678899999888887776654433
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.20 E-value=1.2e-10 Score=128.35 Aligned_cols=264 Identities=10% Similarity=-0.088 Sum_probs=163.7
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEe----------CCCcEEEEecccceEEEeecCCccCcccccccCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAG----------EDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDK 506 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs----------~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~ 506 (969)
|..+.+++.++.+|... .++|+|||++|+..+ .|++|++||..+++.+.....+.....
T Consensus 52 d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~--------- 120 (368)
T d1mdah_ 52 CAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF--------- 120 (368)
T ss_dssp ETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC---------
T ss_pred eCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcccee---------
Confidence 44566677777777765 589999999888764 478899999999888765432110000
Q ss_pred CccCCCCCCCCCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEe-CCCcEEEEECCC
Q 002086 507 ASSLDGSSPNPPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSS-MDKTVRLWDMET 584 (969)
Q Consensus 507 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs-~DgtV~IWDl~t 584 (969)
........++|+| +++|+++. .++.|.+||+.+
T Consensus 121 ---------------------------------------------~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~ 155 (368)
T d1mdah_ 121 ---------------------------------------------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG 155 (368)
T ss_dssp ---------------------------------------------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT
T ss_pred ---------------------------------------------cccCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 0011112478999 77777665 679999999999
Q ss_pred CcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE-------ecCCCCEEEEEEccCCCEEEEEeCC
Q 002086 585 KSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW-------TDLHEMVTAACYTPDGQNALIGSHK 657 (969)
Q Consensus 585 ~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~-------~~~~~~V~sv~fspdg~~Lasgs~d 657 (969)
++.+..+...... .+.|.....+++.+.||.+.+|++........ ..+...+..+.+.+++..+.. ..
T Consensus 156 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~ 230 (368)
T d1mdah_ 156 ASDDQLTKSASCF---HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VA 230 (368)
T ss_dssp TEEEEEEECSSCC---CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BS
T ss_pred CcEeEEeeccCcc---eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cC
Confidence 9998877432222 11221456788888999999998866532211 122233456777777765543 35
Q ss_pred CcEEEEEcCCCceeeeeeeeeccc----ccCCCCCeEEEEEcCCCCceEEEEeCC--------CcEEEEeCCcceEEEEe
Q 002086 658 GSCRLYSIEDSKLHQLNQVDFQTK----KKSSTRKITGFQFSPSNPSEVLVTSAD--------SRIRILDGLDIVHKFRG 725 (969)
Q Consensus 658 g~I~IwDl~~~~~~~~~~~~~~~~----~~~h~~~It~l~fspd~~~~l~sgs~D--------g~I~IwD~~~~~~~~~~ 725 (969)
+.++++++................ ..........+++++++...+++...+ ..|.+||..........
T Consensus 231 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~ 310 (368)
T d1mdah_ 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe
Confidence 667777777665443222111000 001112234577888874444443222 34889997655433222
Q ss_pred ecCCCCeEEEEEeCCCC-E-EEEEeCCCcEEEEEcCCCC
Q 002086 726 FRNTSSQISAAFNADGK-Y-IISASEDSQVYVWKREEHR 762 (969)
Q Consensus 726 ~~~~~~V~sl~fspdg~-~-LaSgs~Dg~I~IWdl~t~~ 762 (969)
.....+..++|+|||+ + ++++..|+.|+|||..+++
T Consensus 311 -~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 311 -SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp -EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred -cCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 2234577899999997 3 4667779999999999853
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.10 E-value=4.6e-10 Score=126.12 Aligned_cols=199 Identities=10% Similarity=0.041 Sum_probs=133.7
Q ss_pred cCCCCEEEEEecC-CcEE-EEEeCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCC--EEEEEECCC--------
Q 002086 552 GHLDDVLDLSWSR-SHLL-LSSSMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDD--YFISGSLDA-------- 617 (969)
Q Consensus 552 gH~~~I~~l~fs~-~~~L-~Sgs~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~--~L~sgs~Dg-------- 617 (969)
.|.-.+....+.+ +++| ++...+..|.++|+.++++...+ .+...+..++|+| +++ +++..+.+.
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~ 147 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGT 147 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSS
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCccc
Confidence 3545555555566 6666 45568899999999999988765 5788999999999 776 454444432
Q ss_pred ---------eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC------------------------------
Q 002086 618 ---------KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG------------------------------ 658 (969)
Q Consensus 618 ---------~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg------------------------------ 658 (969)
.+..+|..+.++.........+..+.|+|+|+++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~ 227 (441)
T d1qnia2 148 DFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK 227 (441)
T ss_dssp CCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred ccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence 23568888887776665566788999999999999887542
Q ss_pred -----------cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEE-----
Q 002086 659 -----------SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHK----- 722 (969)
Q Consensus 659 -----------~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~----- 722 (969)
.+.|++....+.... -.-......+.++|+|...++++..+++|.+||..+....
T Consensus 228 dGk~~~v~~~~v~vvd~~~~~~v~~~---------IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~ 298 (441)
T d1qnia2 228 AGNFKTIGDSKVPVVDGRGESEFTRY---------IPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI 298 (441)
T ss_dssp TTCCBCCTTCCCCEEECSSSCSSEEE---------ECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS
T ss_pred CCCEEEeCCCCcEEEEcccCCceEEE---------EeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccC
Confidence 122222222111111 0112335678999999656677789999999996542211
Q ss_pred -----EEe-ecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 723 -----FRG-FRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 723 -----~~~-~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+.. ...........|+++|..+.+...|..|..|++..
T Consensus 299 ~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~ 342 (441)
T d1qnia2 299 ELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIAD 342 (441)
T ss_dssp CGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CcceEEEeecccccCcccceecCCceEEEcccccceEEEeccch
Confidence 111 11122345568999998888999999999999863
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.03 E-value=4.8e-09 Score=119.19 Aligned_cols=148 Identities=11% Similarity=0.146 Sum_probs=113.3
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCcccc
Q 002086 456 TIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDYVHV 535 (969)
Q Consensus 456 ~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 535 (969)
.+.|.+|++++.. .|+.|.+||+.+++....+...
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~------------------------------------------- 55 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENS------------------------------------------- 55 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTT-------------------------------------------
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchh-------------------------------------------
Confidence 4779999987764 5788999999998775533211
Q ss_pred cceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC---------CCcEEEEECCCCcEEEEeecCCCeEEEEEecC
Q 002086 536 PETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM---------DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPM 605 (969)
Q Consensus 536 ~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~---------DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~ 605 (969)
.+..|...|.++.|+| +++|+.++. ++.+.|||+.+++......+...+..+.|+|
T Consensus 56 -------------~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SP- 121 (470)
T d2bgra1 56 -------------TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP- 121 (470)
T ss_dssp -------------TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS-
T ss_pred -------------hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccccccccc-
Confidence 3445778899999999 788888753 5788999999998777668999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEecCC-------------------CCEEEEEEccCCCEEEEEeCCCc-EEEE
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWTDLH-------------------EMVTAACYTPDGQNALIGSHKGS-CRLY 663 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~-------------------~~V~sv~fspdg~~Lasgs~dg~-I~Iw 663 (969)
++.+|+.. .++.+++|+..++......... .....+.|+|||++|+....|.+ +..|
T Consensus 122 DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~ 198 (470)
T d2bgra1 122 VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI 198 (470)
T ss_dssp STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred CcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence 99999886 4678999999988766543221 22456789999999998765433 4443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.00 E-value=2e-08 Score=113.97 Aligned_cols=43 Identities=12% Similarity=-0.099 Sum_probs=36.7
Q ss_pred eEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEe
Q 002086 445 QEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSM 488 (969)
Q Consensus 445 ~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~ 488 (969)
..+..|.+.+..+.|||||++||... ++.+.+|+..+++....
T Consensus 105 ~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~ 147 (470)
T d2bgra1 105 ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRI 147 (470)
T ss_dssp CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred cccccCCccccccccccCcceeeEee-cccceEEECCCCceeee
Confidence 44778999999999999999999965 77899999998877654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.90 E-value=3.9e-09 Score=118.42 Aligned_cols=239 Identities=11% Similarity=0.100 Sum_probs=155.7
Q ss_pred ccccCEEEEEEeCCCCEEEEE-eCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCC
Q 002086 449 AHEGSIWTIKFSLDARFLASA-GEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKH 527 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTg-s~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 527 (969)
.|.-.+....++|||++|+.. ..+..|.+||+.+++......
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~------------------------------------- 111 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITH------------------------------------- 111 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE-------------------------------------
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEe-------------------------------------
Confidence 466667777788999988655 468899999999988766322
Q ss_pred CCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-Cc--EEEEEeCCC-----------------cEEEEECCCCcE
Q 002086 528 SSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SH--LLLSSSMDK-----------------TVRLWDMETKSC 587 (969)
Q Consensus 528 ~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~--~L~Sgs~Dg-----------------tV~IWDl~t~~~ 587 (969)
..+...+..++|++ ++ +++..+.+. .+..+|..+.+.
T Consensus 112 -----------------------iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v 168 (441)
T d1qnia2 112 -----------------------IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV 168 (441)
T ss_dssp -----------------------CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred -----------------------cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence 12345667777876 43 444333322 245688888888
Q ss_pred EEEeecCCCeEEEEEecCCCCEEEEEECC-----------------------------------------CeEEEEeCCC
Q 002086 588 LKLFAHNDYVTCIQFNPMDDDYFISGSLD-----------------------------------------AKVRIWSISD 626 (969)
Q Consensus 588 i~~~~h~~~V~sv~fsp~~~~~L~sgs~D-----------------------------------------g~I~IWDl~~ 626 (969)
...+.....+..+.|+| ++.++++.+.+ +.+.+++...
T Consensus 169 ~~qI~v~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~ 247 (441)
T d1qnia2 169 AWQVIVDGNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE 247 (441)
T ss_dssp EEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS
T ss_pred eEEEecCCCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC
Confidence 87776667788999999 88888877654 3344444444
Q ss_pred ceEEEEecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcCCCceeeeeeeeecc---cccCCCCCeEEEEEcCCCCceE
Q 002086 627 RLVVDWTDLHEMVTAACYTPDGQNALI-GSHKGSCRLYSIEDSKLHQLNQVDFQT---KKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 627 ~~~~~~~~~~~~V~sv~fspdg~~Las-gs~dg~I~IwDl~~~~~~~~~~~~~~~---~~~~h~~~It~l~fspd~~~~l 702 (969)
..++...........+.++|||+++++ +..+++|.+||+..........+.... ......-.....+|.+++ ..+
T Consensus 248 ~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g-~~y 326 (441)
T d1qnia2 248 SEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG-NAY 326 (441)
T ss_dssp CSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS-EEE
T ss_pred CceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc-eEE
Confidence 445555555555778999999998765 678999999998753211000000000 001122334556899987 677
Q ss_pred EEEeCCCcEEEEeCC------------cceEEEEee---cCCCCeEEEEEeCCCCEEEEEeC
Q 002086 703 LVTSADSRIRILDGL------------DIVHKFRGF---RNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~------------~~~~~~~~~---~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
.+...|.+|..|++. ....++..| .|...+.+.+|+|||+||++++.
T Consensus 327 ts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 327 TTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp EEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred EcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence 778899999999842 122222211 23333456678999999999954
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.87 E-value=1e-08 Score=112.51 Aligned_cols=244 Identities=8% Similarity=-0.086 Sum_probs=141.7
Q ss_pred EEEecC-CcEEEEEe----------CCCcEEEEECCCCcEEEEee-c-------CCCeEEEEEecCCCCEEEEEE-CCCe
Q 002086 559 DLSWSR-SHLLLSSS----------MDKTVRLWDMETKSCLKLFA-H-------NDYVTCIQFNPMDDDYFISGS-LDAK 618 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs----------~DgtV~IWDl~t~~~i~~~~-h-------~~~V~sv~fsp~~~~~L~sgs-~Dg~ 618 (969)
.++|+| ++.|++.+ .|++|.+||..+++++..+. + ......++|+| ++++|+++. .++.
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~ 147 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSA 147 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSC
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCCe
Confidence 367887 66666543 47889999999999887762 1 22345689999 888887775 5799
Q ss_pred EEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 619 VRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 619 I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
|.+||+.++++........... .+......++..+.||.+.++++........... ......+...+....+.+++
T Consensus 148 v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g 223 (368)
T d1mdah_ 148 AAGLSVPGASDDQLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG--AQCTGAQNCSSQAAQANYPG 223 (368)
T ss_dssp EEEEEETTTEEEEEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECC--CCSCTTSCBCSCCEEETTTT
T ss_pred EEEEECCCCcEeEEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeee--cccccccccceeecccccCc
Confidence 9999999998877655443221 1112234666677888888888766543221111 11112233444556666665
Q ss_pred CceEEEEeCCCcEEEEeCCcceEEEEee-c-----------CCCCeEEEEEeCCCCEEEEEeCC---------CcEEEEE
Q 002086 699 PSEVLVTSADSRIRILDGLDIVHKFRGF-R-----------NTSSQISAAFNADGKYIISASED---------SQVYVWK 757 (969)
Q Consensus 699 ~~~l~sgs~Dg~I~IwD~~~~~~~~~~~-~-----------~~~~V~sl~fspdg~~LaSgs~D---------g~I~IWd 757 (969)
..+ ....+.+++++........... . .......+++++++..++....+ ..|.+||
T Consensus 224 -~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D 300 (368)
T d1mdah_ 224 -MLV--WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp -EEE--ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred -EEE--EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence 222 2334555555533211111100 0 00112246788888877655332 2488888
Q ss_pred cCCCCccCCCceeEEecccCCceeeeeeEEeecCCCcccCCCCCccEEEcccccccCCCCcccccCCCCCC-c-cccCCC
Q 002086 758 REEHRNASTGKRAIITTRNHEHFQCKDVSVAIPWPGMVKGEPPPTPVQTKKHAKRISSNPTSATSSPTKEG-S-PAGHSR 835 (969)
Q Consensus 758 l~t~~~~~t~k~~~~~~~~~~~~~~~~~s~~~~w~~~i~G~~~~~~v~~~~~~~~~~~~~~~~~~SP~~~~-i-~~~~~~ 835 (969)
..+++.+.+. .. +..+....+||+++. + .+...+
T Consensus 301 ~~t~~~~~~~------~~--------------------------------------~~~~~~~a~spDG~~~ly~s~~~~ 336 (368)
T d1mdah_ 301 ASVGQTSGPI------SN--------------------------------------GHDSDAIIAAQDGASDNYANSAGT 336 (368)
T ss_dssp SSSCCEEECC------EE--------------------------------------EEEECEEEECCSSSCEEEEEETTT
T ss_pred CCCCcEeEEe------cC--------------------------------------CCceeEEEECCCCCEEEEEEeCCC
Confidence 8874322110 00 001223456888864 3 345567
Q ss_pred CccccCCCCCCccccCCCC
Q 002086 836 RLLPPLPKKTNKVERVPSP 854 (969)
Q Consensus 836 ~~L~~~~~~s~~~~~~l~~ 854 (969)
..++.|...+++..+.+..
T Consensus 337 ~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 337 EVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp TEEEEEESSSCEEEEECCC
T ss_pred CeEEEEECCCCCEEEEEEC
Confidence 7899999888877766544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=3.6e-07 Score=95.28 Aligned_cols=192 Identities=8% Similarity=0.066 Sum_probs=132.4
Q ss_pred EEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEe-cC
Q 002086 558 LDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWT-DL 635 (969)
Q Consensus 558 ~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~-~~ 635 (969)
..+++.+ +.++++....+.|++++-.+...+..........+|++.+ +++++++-..+..+..++.......... ..
T Consensus 60 ~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 138 (260)
T d1rwia_ 60 QGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTG 138 (260)
T ss_dssp CCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCS
T ss_pred eEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccc-cceeEeeccccccccccccccceeeeeeecc
Confidence 4577777 6666666666667666666665554445556789999998 8888887777777888887665433322 22
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEe
Q 002086 636 HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILD 715 (969)
Q Consensus 636 ~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD 715 (969)
......+++.++|+.+++...++.|..++.......... .........|++.+++ .++++....+.|..++
T Consensus 139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~--------~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~ 209 (260)
T d1rwia_ 139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP--------FTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLL 209 (260)
T ss_dssp CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC--------CSSCCSEEEEEECTTC-CEEEEETTTTEEEEEC
T ss_pred cCCcceeeecCCCCEeeeccccccccccccccceeeeee--------ccccCCCccceeeeee-eeeeeecCCCEEEEEe
Confidence 345678999999998888888899999998765432211 2334567899999987 6777777788898888
Q ss_pred CCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 716 GLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 716 ~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
...................|+++++|.++++-..++.|+.++..
T Consensus 210 ~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 210 AGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp TTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred CCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence 65444333333333456789999999888876767766655443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.80 E-value=7.4e-07 Score=94.94 Aligned_cols=241 Identities=9% Similarity=0.060 Sum_probs=162.8
Q ss_pred ccccceeeeEecccccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCC
Q 002086 437 DLSALHLCQEIQAHEGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPN 516 (969)
Q Consensus 437 dl~~~~l~~~L~gH~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~ 516 (969)
++.+.+.+..+.... .+..++++|||+++++...+++|..|+... +..
T Consensus 14 ~~~~~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~------------------------------ 61 (302)
T d2p4oa1 14 ELAPAKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQ------------------------------ 61 (302)
T ss_dssp CCCCEEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEE------------------------------
T ss_pred cCCcccEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CEE------------------------------
Confidence 555566666665433 588999999999999999999888887542 211
Q ss_pred CCcccccCCCCCCCCcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCC--cEEEEe--
Q 002086 517 PPPEKKKKGKHSSPDYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETK--SCLKLF-- 591 (969)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~--~~i~~~-- 591 (969)
.+......+.+++|.+ ++++++...++.+.+|+.... ......
T Consensus 62 --------------------------------~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (302)
T d2p4oa1 62 --------------------------------IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL 109 (302)
T ss_dssp --------------------------------EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred --------------------------------EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecccc
Confidence 1222445688999998 788888888888888876543 333322
Q ss_pred ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecC-----------CCCEEEEEEccCCCEEEEEeCCCcE
Q 002086 592 AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDL-----------HEMVTAACYTPDGQNALIGSHKGSC 660 (969)
Q Consensus 592 ~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~-----------~~~V~sv~fspdg~~Lasgs~dg~I 660 (969)
........+++.+ +++++++-+.++.+..+|...+........ ...+..+.+.. +.++++.+..+.|
T Consensus 110 ~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i 187 (302)
T d2p4oa1 110 PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLL 187 (302)
T ss_dssp TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEE
T ss_pred CCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeE
Confidence 4556789999999 888888888899999999887754432211 12355666653 3355566778899
Q ss_pred EEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEE-eecCCCCeEEEEE--
Q 002086 661 RLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFR-GFRNTSSQISAAF-- 737 (969)
Q Consensus 661 ~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~-~~~~~~~V~sl~f-- 737 (969)
..+++........... .........++|.+++ .++++...++.|..++.......+. ........++++|
T Consensus 188 ~~~~~~~~~~~~~~~~------~~~~~~pdgia~d~dG-~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~ 260 (302)
T d2p4oa1 188 LRIPVDSTDKPGEPEI------FVEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQ 260 (302)
T ss_dssp EEEEBCTTSCBCCCEE------EEESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECC
T ss_pred Eecccccccccccccc------ccCCCCCcceEECCCC-CEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcC
Confidence 9888876543222111 1122345679999998 6777777889999998655443333 2334455789999
Q ss_pred -eCCCCEEEEEeCC
Q 002086 738 -NADGKYIISASED 750 (969)
Q Consensus 738 -spdg~~LaSgs~D 750 (969)
++|++.|+.++..
T Consensus 261 ~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 261 TEGDCTAIYVVTNG 274 (302)
T ss_dssp STTTTTEEEEEECT
T ss_pred CCCCCCEEEEECCC
Confidence 6788888766544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.73 E-value=8.3e-06 Score=85.48 Aligned_cols=241 Identities=9% Similarity=0.153 Sum_probs=159.3
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCCCc
Q 002086 453 SIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSPDY 532 (969)
Q Consensus 453 ~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 532 (969)
.-..|+++++|+++++-...+.|++||.+ |+.+..+......
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~------------------------------------- 65 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR------------------------------------- 65 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-------------------------------------
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC-------------------------------------
Confidence 35799999999988887778899999965 5555432110000
Q ss_pred ccccceeeecCCCceeEeccCCCCEEEEEecC--CcEEEEE-eCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCC
Q 002086 533 VHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR--SHLLLSS-SMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDD 607 (969)
Q Consensus 533 ~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~--~~~L~Sg-s~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~ 607 (969)
.+....-..+++.. +..+++. +.++.|.+++. .+.....+ ........+++.+ ++
T Consensus 66 ------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G 125 (279)
T d1q7fa_ 66 ------------------DSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KG 125 (279)
T ss_dssp ------------------TTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TS
T ss_pred ------------------cccccccccccccccccccceeccCCccccccccc-cccceeecCCCcccccceecccc-CC
Confidence 00111222334333 3344433 34556777775 45555555 3456678999998 88
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEE--ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCC
Q 002086 608 DYFISGSLDAKVRIWSISDRLVVDW--TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSS 685 (969)
Q Consensus 608 ~~L~sgs~Dg~I~IWDl~~~~~~~~--~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h 685 (969)
.++++....+.+.+++.....+..+ ..+......+++.+++..+++....+.|++||......... ...+.
T Consensus 126 ~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~-------g~~g~ 198 (279)
T d1q7fa_ 126 RIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQI-------GGEGI 198 (279)
T ss_dssp CEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEE-------SCTTT
T ss_pred cEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCceeeee-------ccccc
Confidence 8888888888899998765543332 23346688999999999888888899999999865432211 11344
Q ss_pred CCCeEEEEEcCCCCceEEEEeC-CCcEEEEeCC-cceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 686 TRKITGFQFSPSNPSEVLVTSA-DSRIRILDGL-DIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 686 ~~~It~l~fspd~~~~l~sgs~-Dg~I~IwD~~-~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.....+|++.+++ ..+++-.. ++.|.+|+.. +....+...........+++.+||.+++ ++.+..|++|+...
T Consensus 199 ~~~P~giavD~~G-~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 199 TNYPIGVGINSNG-EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ 273 (279)
T ss_dssp SCSEEEEEECTTC-CEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred ccCCcccccccCC-eEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence 5568899999998 55555443 4579999854 3344444433444578899999997655 55789999999976
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.68 E-value=7.3e-06 Score=87.78 Aligned_cols=200 Identities=10% Similarity=0.070 Sum_probs=126.2
Q ss_pred EEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEee-cC----CCeEEEEEecCCCCEEEEEEC---------------
Q 002086 557 VLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFA-HN----DYVTCIQFNPMDDDYFISGSL--------------- 615 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~-h~----~~V~sv~fsp~~~~~L~sgs~--------------- 615 (969)
-..+.|.+ ++.|+++...+.|...|...+....... .. ...+.+++.+ ++++.++-..
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccC
Confidence 46788988 6778888877889999987654332221 11 1357899998 8887776422
Q ss_pred CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCC-----EEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 616 DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQ-----NALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 616 Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~-----~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
.|.|..++.. ++.......-...+.++|+|+++ ++++-+..+.|..||+............. ...........
T Consensus 152 ~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~-~~~~~~~~~pd 229 (314)
T d1pjxa_ 152 FGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-HIPGTHEGGAD 229 (314)
T ss_dssp CEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-ECCCCSSCEEE
T ss_pred CceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEE-Eccccccccce
Confidence 2345555543 33333333334467899999875 44455678899999876543322211111 11112233467
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEEcCC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGK-YIISASEDSQVYVWKREE 760 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~-~LaSgs~Dg~I~IWdl~t 760 (969)
.+++..+| .++++....+.|++||.................++++|.||++ +++|.+.+|.|+..++..
T Consensus 230 GiavD~~G-nlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 230 GMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eeEEecCC-cEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 89999988 6777777889999999653322222222334678999999997 556667788888888764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.52 E-value=7.1e-05 Score=79.91 Aligned_cols=235 Identities=8% Similarity=0.041 Sum_probs=147.4
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEEeecCCccCcccccccCCCCCccCCCCCCCCCcccccCCCCCCC
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMSMSEGNLTPIHPSLCNSSDKASSLDGSSPNPPPEKKKKGKHSSP 530 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 530 (969)
.-.+-+++|.++|++.++-...+.|..|+.++++....
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~------------------------------------------ 76 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP------------------------------------------ 76 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE------------------------------------------
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEE------------------------------------------
Confidence 33456899999999888877888888888765543321
Q ss_pred CcccccceeeecCCCceeEeccCCCCEEEEEecC-CcEEEEEeC----CCcEEEEECCCCcEEEEeec---CCCeEEEEE
Q 002086 531 DYVHVPETVFSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSM----DKTVRLWDMETKSCLKLFAH---NDYVTCIQF 602 (969)
Q Consensus 531 ~~~~~~~~v~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~----DgtV~IWDl~t~~~i~~~~h---~~~V~sv~f 602 (969)
+.........+++.+ +.++++... .+.|...+...........+ ...+..+++
T Consensus 77 -------------------~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~ 137 (319)
T d2dg1a1 77 -------------------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF 137 (319)
T ss_dssp -------------------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE
T ss_pred -------------------EeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeE
Confidence 112334567889988 555555432 33466666666665555432 345788999
Q ss_pred ecCCCCEEEEEEC------CCeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcCCCce-eeee
Q 002086 603 NPMDDDYFISGSL------DAKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALI-GSHKGSCRLYSIEDSKL-HQLN 674 (969)
Q Consensus 603 sp~~~~~L~sgs~------Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Las-gs~dg~I~IwDl~~~~~-~~~~ 674 (969)
.+ ++++.++... .+.+..++...+.+......-...+.++|+|+++.|.+ -+..+.|..|++..... ....
T Consensus 138 d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~ 216 (319)
T d2dg1a1 138 DS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF 216 (319)
T ss_dssp CT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE
T ss_pred Ee-ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccc
Confidence 99 8887666432 23466666665555444444455788999999987654 45688999999864322 1111
Q ss_pred eeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCc-ceEEEEee----cCCCCeEEEEEeCCCCEEEEEeC
Q 002086 675 QVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLD-IVHKFRGF----RNTSSQISAAFNADGKYIISASE 749 (969)
Q Consensus 675 ~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~-~~~~~~~~----~~~~~V~sl~fspdg~~LaSgs~ 749 (969)
...... ..........+++..+| .++++....+.|.+||... ....+... .+...+++++|.+++..|++...
T Consensus 217 ~~~~~~-~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 217 GATIPY-YFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEEEE-ECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred cceeee-ccCCccceeeeeEcCCC-CEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 111111 11222336789999988 6777778899999999542 23333322 12335679999998877766654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=5.7e-05 Score=77.34 Aligned_cols=209 Identities=13% Similarity=0.118 Sum_probs=137.9
Q ss_pred eecCCCceeEeccCCCCEEEEEecC-CcEEEEEeCCC---cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEEC
Q 002086 540 FSLSEKPFCSFIGHLDDVLDLSWSR-SHLLLSSSMDK---TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSL 615 (969)
Q Consensus 540 ~~~~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~Dg---tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~ 615 (969)
....+.....+..+...+..-+||| ++.|+...... .+.+.+...+.......+........|+| ++..++....
T Consensus 24 ~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~i~~~~~ 102 (269)
T d2hqsa1 24 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALS 102 (269)
T ss_dssp EETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEEEC
T ss_pred EcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecC-CCCeeeEeee
Confidence 3445555566667788899999999 78888765443 47788888888887788889999999999 8887776554
Q ss_pred -CCe--EEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEe-CCC--cEEEEEcCCCceeeeeeeeecccccCCCCCe
Q 002086 616 -DAK--VRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGS-HKG--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKI 689 (969)
Q Consensus 616 -Dg~--I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~I 689 (969)
++. +..+.....................+++++..++..+ .+| .|.++++........ .......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~---------~~~~~~~ 173 (269)
T d2hqsa1 103 KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI---------TWEGSQN 173 (269)
T ss_dssp TTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC---------CCSSSEE
T ss_pred cCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceee---------ecccccc
Confidence 333 3444444455555555556666777888877666544 455 455556655443221 2344566
Q ss_pred EEEEEcCCCCceEEEEeCCCcEEEE--eCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeC---CCcEEEEEcCC
Q 002086 690 TGFQFSPSNPSEVLVTSADSRIRIL--DGLDIVHKFRGFRNTSSQISAAFNADGKYIISASE---DSQVYVWKREE 760 (969)
Q Consensus 690 t~l~fspd~~~~l~sgs~Dg~I~Iw--D~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~---Dg~I~IWdl~t 760 (969)
....|+|++...+......+...+| +....... ............|+|||++|+-.+. ...|++|+++.
T Consensus 174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg 247 (269)
T d2hqsa1 174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 247 (269)
T ss_dssp EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred cccccccccceeEEEeecCCceeeeEeecccccce--EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 7788999995555555555554444 44433332 2234455678899999999875544 34689999986
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.49 E-value=3e-05 Score=84.64 Aligned_cols=166 Identities=11% Similarity=0.100 Sum_probs=103.2
Q ss_pred cCCCeEEEEEecCCCCEEEEEEC-CCeEEEEeCCC-ceEE-----EEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEE
Q 002086 593 HNDYVTCIQFNPMDDDYFISGSL-DAKVRIWSISD-RLVV-----DWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYS 664 (969)
Q Consensus 593 h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWDl~~-~~~~-----~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwD 664 (969)
....+.++.|+| ++++++++.. ...|.+|+... +.+. ...........++|+|+++++.+.. .+++|.+|+
T Consensus 143 ~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~ 221 (365)
T d1jofa_ 143 ENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp TTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence 344578999999 9998877764 45788887654 2222 1222346789999999999886655 678999999
Q ss_pred cCCCceeeeeee---eecc--------cccCCCCCeEEEEEcCCCCceEEEEe-CCC-----cEEEEeCCcc---eEEEE
Q 002086 665 IEDSKLHQLNQV---DFQT--------KKKSSTRKITGFQFSPSNPSEVLVTS-ADS-----RIRILDGLDI---VHKFR 724 (969)
Q Consensus 665 l~~~~~~~~~~~---~~~~--------~~~~h~~~It~l~fspd~~~~l~sgs-~Dg-----~I~IwD~~~~---~~~~~ 724 (969)
+........... .+.. ...........+.++|++ .+|+++. .+. .|..|+.... .....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~ 300 (365)
T d1jofa_ 222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF 300 (365)
T ss_dssp ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE
T ss_pred ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCC-CEEEEEcccCCCccceEEEEEEecCCCceeeEeE
Confidence 977654322111 1100 011222345678999999 5555542 222 3666764332 11111
Q ss_pred ---eecCCCCeEEEEEeC-CCCEEEEEe-CCCcEEEEEcCC
Q 002086 725 ---GFRNTSSQISAAFNA-DGKYIISAS-EDSQVYVWKREE 760 (969)
Q Consensus 725 ---~~~~~~~V~sl~fsp-dg~~LaSgs-~Dg~I~IWdl~t 760 (969)
..........++|+| +|++|+.+. .++.|.+|+++.
T Consensus 301 ~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 301 LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred eeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 111223446789998 899887775 578899999875
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.46 E-value=6.6e-06 Score=87.31 Aligned_cols=201 Identities=9% Similarity=-0.003 Sum_probs=140.7
Q ss_pred CEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC--ceEEE-
Q 002086 556 DVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD--RLVVD- 631 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~--~~~~~- 631 (969)
.+..+++.+ +.++++...+++|..||.. ++..........+.+++|.+ +++++++...++.+.+|+... +....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeec
Confidence 578899999 7888888889999999865 44555557778899999999 899999998889888888754 23322
Q ss_pred -EecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeec--ccccCCCCCeEEEEEcCCCCceEEEEeCC
Q 002086 632 -WTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQ--TKKKSSTRKITGFQFSPSNPSEVLVTSAD 708 (969)
Q Consensus 632 -~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~--~~~~~h~~~It~l~fspd~~~~l~sgs~D 708 (969)
..........+++.++++++++.+.++.+..++...+.......-... ............+.+.. ..++++.+..
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~ 184 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEK 184 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTT
T ss_pred cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCC
Confidence 233446688999999999988888899999999887754322111111 11122234556676654 3577777888
Q ss_pred CcEEEEeCCcce--EEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 709 SRIRILDGLDIV--HKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 709 g~I~IwD~~~~~--~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
+.|+.++..... ..............++|+++|.++++...++.|..++...
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G 238 (302)
T d2p4oa1 185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 238 (302)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence 999988843211 1111111223345789999999888888899999887653
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=0.00013 Score=74.52 Aligned_cols=179 Identities=12% Similarity=0.022 Sum_probs=109.9
Q ss_pred EeccCCCCEEEEEecC-CcEEEEEe-CCCc--EEEEECCCCcEEEEeecCCCeEEEEEecCCCC-EEEEEECCC--eEEE
Q 002086 549 SFIGHLDDVLDLSWSR-SHLLLSSS-MDKT--VRLWDMETKSCLKLFAHNDYVTCIQFNPMDDD-YFISGSLDA--KVRI 621 (969)
Q Consensus 549 ~l~gH~~~I~~l~fs~-~~~L~Sgs-~Dgt--V~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~-~L~sgs~Dg--~I~I 621 (969)
.+..+.+.+....|+| +..++... .++. +..+.....................+++ .+. .+++...+| .|.+
T Consensus 77 ~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~i~~ 155 (269)
T d2hqsa1 77 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYK 155 (269)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEE
T ss_pred EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeecccccccccccc-ccccceecccccCCceEee
Confidence 3445677788899999 66665544 3333 3334444444555445555566667777 444 444544555 4666
Q ss_pred EeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCC
Q 002086 622 WSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG---SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSN 698 (969)
Q Consensus 622 WDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg---~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~ 698 (969)
.++..+................|+|+++.++..+.++ .+.+++...+.... ...........|+|+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~~~p~~SPDG 225 (269)
T d2hqsa1 156 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV----------LSSTFLDETPSLAPNG 225 (269)
T ss_dssp EETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE----------CCCSSSCEEEEECTTS
T ss_pred eecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceE----------eecCccccceEECCCC
Confidence 6777777666666677788899999999988766544 44455555443321 2234456778899999
Q ss_pred CceEEEEeC--CCcEEEEeCCcceEEEEeecCCCCeEEEEEeC
Q 002086 699 PSEVLVTSA--DSRIRILDGLDIVHKFRGFRNTSSQISAAFNA 739 (969)
Q Consensus 699 ~~~l~sgs~--Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fsp 739 (969)
..++++... ...|++++...... .........+...+|+|
T Consensus 226 ~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 226 TMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp SEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence 544444433 34578888654332 23333455677788988
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.24 E-value=3.2e-05 Score=79.94 Aligned_cols=195 Identities=10% Similarity=0.030 Sum_probs=131.4
Q ss_pred CEEEEEecC-CcEEEEE-eCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEE
Q 002086 556 DVLDLSWSR-SHLLLSS-SMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDW 632 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~ 632 (969)
.-.+|++.+ ++.+++. +..+.|..++.......... .-......|++++ ++.++++....+.+++++..+...+..
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~~ 93 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLP 93 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceeeee
Confidence 457899988 6655554 45577777766654433322 3334567889998 888888777777777776665555544
Q ss_pred ecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEE
Q 002086 633 TDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIR 712 (969)
Q Consensus 633 ~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~ 712 (969)
......+..+++.++++++++-..+..+..++.......... ........++++.+++ ..+++...++.|.
T Consensus 94 ~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~~i~~~~~g-~~~v~~~~~~~i~ 164 (260)
T d1rwia_ 94 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--------FTGLNDPDGVAVDNSG-NVYVTDTDNNRVV 164 (260)
T ss_dssp CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC--------CCSCCSCCEEEECTTC-CEEEEEGGGTEEE
T ss_pred eeeeeecccccccccceeEeeccccccccccccccceeeeee--------ecccCCcceeeecCCC-CEeeecccccccc
Confidence 444466899999999998887777777888777654432111 1223445789999987 6777778888999
Q ss_pred EEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 713 ILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 713 IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.++...................++++++|.++++....+.|+.++...
T Consensus 165 ~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~ 212 (260)
T d1rwia_ 165 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 212 (260)
T ss_dssp EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred ccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence 999665443333333445567899999999888888888888887654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.16 E-value=0.0007 Score=71.09 Aligned_cols=188 Identities=11% Similarity=0.068 Sum_probs=120.8
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEeec-----CCCeEEEEEecCCCCEEEEEEC----CCeEEEEeCC
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLFAH-----NDYVTCIQFNPMDDDYFISGSL----DAKVRIWSIS 625 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h-----~~~V~sv~fsp~~~~~L~sgs~----Dg~I~IWDl~ 625 (969)
..+.++++.++..|+.++.+ -|.++|..+++....... ...++.+.+.| ++++.++... .+.-.+|.+.
T Consensus 59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~ 136 (295)
T d2ghsa1 59 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 136 (295)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec
Confidence 34667887775555556665 588999999987665421 23578899999 8887776543 2345677777
Q ss_pred CceEEEEecCCCCEEEEEEccCCCEEEE-EeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 626 DRLVVDWTDLHEMVTAACYTPDGQNALI-GSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 626 ~~~~~~~~~~~~~V~sv~fspdg~~Las-gs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
.+++..........+.++|+++++.++. -+..+.|..|++..........................+++..+| .+.++
T Consensus 137 ~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G-nlWva 215 (295)
T d2ghsa1 137 KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNA 215 (295)
T ss_dssp TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEE
T ss_pred CCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCC-CEEee
Confidence 7776666555566789999999987654 556788999987543221111100111112344567889999988 66666
Q ss_pred EeCCCcEEEEeCCc-ceEEEEeecCCCCeEEEEEe-CCCCEEEEE
Q 002086 705 TSADSRIRILDGLD-IVHKFRGFRNTSSQISAAFN-ADGKYIISA 747 (969)
Q Consensus 705 gs~Dg~I~IwD~~~-~~~~~~~~~~~~~V~sl~fs-pdg~~LaSg 747 (969)
.-..+.|..||... ....+.. ....+++++|- +|.+.|+..
T Consensus 216 ~~~~g~V~~~dp~G~~~~~i~l--P~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 216 RWGEGAVDRYDTDGNHIARYEV--PGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp EETTTEEEEECTTCCEEEEEEC--SCSBEEEEEEESTTSCEEEEE
T ss_pred eeCCCceEEecCCCcEeeEecC--CCCceEEEEEeCCCCCEEEEE
Confidence 66788899999543 3333322 23458999996 576655433
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.08 E-value=0.00056 Score=72.64 Aligned_cols=204 Identities=13% Similarity=0.152 Sum_probs=135.0
Q ss_pred ceeEeccCCCCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEe-ecCCCeEEEEEecCCCCEEEEEEC----CCeE
Q 002086 546 PFCSFIGHLDDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLF-AHNDYVTCIQFNPMDDDYFISGSL----DAKV 619 (969)
Q Consensus 546 ~~~~l~gH~~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~----Dg~I 619 (969)
+...+......+..++|.+ ++++++-...+.|..|+..+++....+ ........|+|.+ ++.++++... .+.|
T Consensus 31 p~~~~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i 109 (319)
T d2dg1a1 31 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGI 109 (319)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEE
T ss_pred CcEEeccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeE
Confidence 3334444555667899988 677777778999999999888766655 5566789999999 8887776543 2346
Q ss_pred EEEeCCCceEEEEecC---CCCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeecccccCCCCCeE
Q 002086 620 RIWSISDRLVVDWTDL---HEMVTAACYTPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKIT 690 (969)
Q Consensus 620 ~IWDl~~~~~~~~~~~---~~~V~sv~fspdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It 690 (969)
...+.....+...... ...+..+++.++|.+.++... .+.+..++.......... .......
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~---------~~~~~pn 180 (319)
T d2dg1a1 110 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII---------QNISVAN 180 (319)
T ss_dssp EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE---------EEESSEE
T ss_pred EEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEe---------eccceee
Confidence 6666666655544432 245788999999987665432 223555554443322111 1123457
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCc---ceEE-----EEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLD---IVHK-----FRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~---~~~~-----~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.++|+|++..++++-+..+.|+.|+... .... ..........-.+++..+|++.++....+.|.+|+-+
T Consensus 181 Gia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~ 257 (319)
T d2dg1a1 181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 257 (319)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence 8999999855666767889999998432 1111 1111222234579999999999998889999999953
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.90 E-value=0.004 Score=64.18 Aligned_cols=196 Identities=8% Similarity=0.167 Sum_probs=131.8
Q ss_pred CCEEEEEecC-CcEEEEEeCCCcEEEEECCCCcEEEEeec-------CCCeEEEEEecCCCCEEEEE-ECCCeEEEEeCC
Q 002086 555 DDVLDLSWSR-SHLLLSSSMDKTVRLWDMETKSCLKLFAH-------NDYVTCIQFNPMDDDYFISG-SLDAKVRIWSIS 625 (969)
Q Consensus 555 ~~I~~l~fs~-~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h-------~~~V~sv~fsp~~~~~L~sg-s~Dg~I~IWDl~ 625 (969)
.....|++.+ ++++++-.....|++||.. ++.+..++. ......+++....+..+++. +.++.|.+++..
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 3467899988 6777777788899999965 677776632 12345677766334444443 345678888875
Q ss_pred CceEEEEe-cCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 626 DRLVVDWT-DLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 626 ~~~~~~~~-~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
......+. ........+++.++|.++++....+.+.+++.... ...... ...+......+++.+++ ..+++
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-~~~~~g------~~~~~~~~~~i~~d~~g-~i~v~ 173 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFG------CSKHLEFPNGVVVNDKQ-EIFIS 173 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEE------CTTTCSSEEEEEECSSS-EEEEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc-eeeccc------ccccccccceeeeccce-eEEee
Confidence 44443332 23356789999999998888888888888886543 222111 13456778899999887 67777
Q ss_pred EeCCCcEEEEeCCcc-eEEEEeecCCCCeEEEEEeCCCCEEEEEeC-CCcEEEEEcC
Q 002086 705 TSADSRIRILDGLDI-VHKFRGFRNTSSQISAAFNADGKYIISASE-DSQVYVWKRE 759 (969)
Q Consensus 705 gs~Dg~I~IwD~~~~-~~~~~~~~~~~~V~sl~fspdg~~LaSgs~-Dg~I~IWdl~ 759 (969)
....+.|++|+.... ...+...........++++++|+++++-.. ++.|.+|+.+
T Consensus 174 d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~ 230 (279)
T d1q7fa_ 174 DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 230 (279)
T ss_dssp EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred eccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC
Confidence 788899999996532 222222223445678999999998877554 4569998843
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.83 E-value=0.0012 Score=69.96 Aligned_cols=132 Identities=6% Similarity=0.107 Sum_probs=87.9
Q ss_pred cEEEEECCCCcEEEEeecCCCeEEEEEecCCCC-----EEEEEECCCeEEEEeCCCc-eEE-----EEec--CCCCEEEE
Q 002086 576 TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDD-----YFISGSLDAKVRIWSISDR-LVV-----DWTD--LHEMVTAA 642 (969)
Q Consensus 576 tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~-----~L~sgs~Dg~I~IWDl~~~-~~~-----~~~~--~~~~V~sv 642 (969)
.|..++.. ++.......-...+.++|+| +++ ++++-+..+.|..||+... .+. .... .......+
T Consensus 154 ~v~~~~~d-g~~~~~~~~~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGi 231 (314)
T d1pjxa_ 154 SIYCFTTD-GQMIQVDTAFQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp EEEEECTT-SCEEEEEEEESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred eEEEEeec-CceeEeeCCcceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceee
Confidence 44444432 34444444445567899998 553 4555567888999987543 221 1111 11235689
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCC
Q 002086 643 CYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGL 717 (969)
Q Consensus 643 ~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~ 717 (969)
++..+|+++++....+.|.+||.+.+...... .......++++|.|++..++++.+.++.|+.++..
T Consensus 232 avD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i--------~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI--------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCSEEE--------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEecCCcEEEEEcCCCEEEEEeCCCCEEEEEE--------ECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 99999998888888999999998876643322 22345688999999885567777788999888854
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.83 E-value=0.0051 Score=64.20 Aligned_cols=188 Identities=12% Similarity=0.113 Sum_probs=127.6
Q ss_pred EEEecC-Cc-EEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCC
Q 002086 559 DLSWSR-SH-LLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLH 636 (969)
Q Consensus 559 ~l~fs~-~~-~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~ 636 (969)
+..|.+ ++ ++.+=-..+.|.-||..+++.. .+.....+.++++.+ ++.++++ +.+ .|.++|..+++...+....
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence 456775 44 4444446788999999988653 556677889999987 6655554 554 5899999998876654322
Q ss_pred -----CCEEEEEEccCCCEEEEEeC----CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEeC
Q 002086 637 -----EMVTAACYTPDGQNALIGSH----KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTSA 707 (969)
Q Consensus 637 -----~~V~sv~fspdg~~Lasgs~----dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs~ 707 (969)
..++.+.+.|+|.+.++... .+.-.+|.+..++..... ........++|++++..++++-+.
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~---------~~~~~~Ng~~~s~d~~~l~~~dt~ 168 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF---------ADISIPNSICFSPDGTTGYFVDTK 168 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE---------EEESSEEEEEECTTSCEEEEEETT
T ss_pred cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe---------eccCCcceeeecCCCceEEEeecc
Confidence 34788999999987776543 234567777666543321 112345789999998667777788
Q ss_pred CCcEEEEeCCc-------ceEEE-EeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcC
Q 002086 708 DSRIRILDGLD-------IVHKF-RGFRNTSSQISAAFNADGKYIISASEDSQVYVWKRE 759 (969)
Q Consensus 708 Dg~I~IwD~~~-------~~~~~-~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~ 759 (969)
.+.|+.|+... ....+ .........-.+++..+|.+.++.-..+.|..||-+
T Consensus 169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~ 228 (295)
T d2ghsa1 169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 228 (295)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence 88999987421 11122 222234456789999999988887778899999954
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.72 E-value=0.00077 Score=72.96 Aligned_cols=158 Identities=11% Similarity=0.121 Sum_probs=99.1
Q ss_pred CEEEEEecC-CcEEEEEeC-CCcEEEEECCCC-cEEEE--e---ecCCCeEEEEEecCCCCEEEE-EECCCeEEEEeCCC
Q 002086 556 DVLDLSWSR-SHLLLSSSM-DKTVRLWDMETK-SCLKL--F---AHNDYVTCIQFNPMDDDYFIS-GSLDAKVRIWSISD 626 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~Sgs~-DgtV~IWDl~t~-~~i~~--~---~h~~~V~sv~fsp~~~~~L~s-gs~Dg~I~IWDl~~ 626 (969)
.+.++.|+| ++++++++. ...|.+|++... ..... . ........++|+| ++.++++ .-.+++|.+|++..
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence 478999999 777777654 457888876543 33221 1 3456789999999 8887655 45678999999876
Q ss_pred ceEEEEe--------------------cCCCCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeeecc
Q 002086 627 RLVVDWT--------------------DLHEMVTAACYTPDGQNALIGSH------KGSCRLYSIEDSKLHQLNQVDFQT 680 (969)
Q Consensus 627 ~~~~~~~--------------------~~~~~V~sv~fspdg~~Lasgs~------dg~I~IwDl~~~~~~~~~~~~~~~ 680 (969)
+...... ........+.++|+|++|+++.. .+.|..|++.......... ...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~--~~~ 302 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL--FLS 302 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE--EEE
T ss_pred CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe--Eee
Confidence 5321110 01123567899999999987643 2247777776543222111 111
Q ss_pred cccCCCCCeEEEEEcC-CCCceEEEE-eCCCcEEEEeCC
Q 002086 681 KKKSSTRKITGFQFSP-SNPSEVLVT-SADSRIRILDGL 717 (969)
Q Consensus 681 ~~~~h~~~It~l~fsp-d~~~~l~sg-s~Dg~I~IwD~~ 717 (969)
..........+++++| +| ++|+++ ..++.|.+|+..
T Consensus 303 ~~~~~G~~p~~i~~~p~~G-~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 303 PTPTSGGHSNAVSPCPWSD-EWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp ECSSCCTTCCCEEECTTCT-TEEEEECSSSCEEEEEEEE
T ss_pred EEEcCCCCccEEEecCCCC-CEEEEEeCCCCeEEEEEEe
Confidence 1122344567789998 55 666555 577899999743
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.36 E-value=0.00093 Score=67.91 Aligned_cols=195 Identities=10% Similarity=0.082 Sum_probs=100.5
Q ss_pred eccCCCCEEEEEecC-CcEEEEEeC-C-----CcEEEEECCCCcEEEEee-------cCCCeEEEEEecCCCCEEEEEEC
Q 002086 550 FIGHLDDVLDLSWSR-SHLLLSSSM-D-----KTVRLWDMETKSCLKLFA-------HNDYVTCIQFNPMDDDYFISGSL 615 (969)
Q Consensus 550 l~gH~~~I~~l~fs~-~~~L~Sgs~-D-----gtV~IWDl~t~~~i~~~~-------h~~~V~sv~fsp~~~~~L~sgs~ 615 (969)
|..+.+.+...+|+| ++.|+.... + ..|.+++..+++...+.. .........|+| +++.|+....
T Consensus 36 Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~ 114 (281)
T d1k32a2 36 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDA 114 (281)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECT
T ss_pred EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCC-CCCEEEEEEc
Confidence 334556678899999 777775532 2 247888888888766532 223567889999 8888876533
Q ss_pred C------CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC-----------cEEEEEcCCCceeeeeeeee
Q 002086 616 D------AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG-----------SCRLYSIEDSKLHQLNQVDF 678 (969)
Q Consensus 616 D------g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg-----------~I~IwDl~~~~~~~~~~~~~ 678 (969)
. ..+...+...+......... ...+.+.+.+..++...... ...++........
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 185 (281)
T d1k32a2 115 MQPFSSMTCLYRVENDGINFVPLNLGP--ATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK------- 185 (281)
T ss_dssp TSSSTTCCEEEEEEGGGTEEEECCSCS--CSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE-------
T ss_pred cCCCccceeeeeecCCCceeEEecCCc--cceeeecCCCeEEEeeccccceeeeeccCCcceeeeecccccee-------
Confidence 2 23556666655544332222 22233333333333322211 1111111111110
Q ss_pred cccccCCCCCeEEEEEcCCCCceEEEEeCCC--cEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 002086 679 QTKKKSSTRKITGFQFSPSNPSEVLVTSADS--RIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVW 756 (969)
Q Consensus 679 ~~~~~~h~~~It~l~fspd~~~~l~sgs~Dg--~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IW 756 (969)
.............+.++ ..+.....++ .|+++|................ ...|+|||+.|+-.. ++.|+++
T Consensus 186 --~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~--~~~~SpDG~~I~f~~-~~~l~~~ 258 (281)
T d1k32a2 186 --KIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY--PRHLNTDGRRILFSK-GGSIYIF 258 (281)
T ss_dssp --EEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSC--EEEEEESSSCEEEEE-TTEEEEE
T ss_pred --eccCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEeecCCCcc--cccCcCCCCEEEEEe-CCEEEEE
Confidence 00122333444455553 2444443333 4677775533222111112222 346899999887644 7889999
Q ss_pred EcCCC
Q 002086 757 KREEH 761 (969)
Q Consensus 757 dl~t~ 761 (969)
|++++
T Consensus 259 d~~~g 263 (281)
T d1k32a2 259 NPDTE 263 (281)
T ss_dssp CTTTC
T ss_pred ECCCC
Confidence 99874
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.0024 Score=71.39 Aligned_cols=106 Identities=12% Similarity=0.091 Sum_probs=70.6
Q ss_pred EEEEEecC-CcEEEEE---------eCCCcEEEEECCCCcEEEEe---ecCCCeEEEEEecCCCCEEEEEECCCeEEEEe
Q 002086 557 VLDLSWSR-SHLLLSS---------SMDKTVRLWDMETKSCLKLF---AHNDYVTCIQFNPMDDDYFISGSLDAKVRIWS 623 (969)
Q Consensus 557 I~~l~fs~-~~~L~Sg---------s~DgtV~IWDl~t~~~i~~~---~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWD 623 (969)
+....|+| +++++.. +..+.+.++|+.++...... .....+....|+| ++..|+-.. ++.|.+.+
T Consensus 63 ~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~~ 140 (465)
T d1xfda1 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYCA 140 (465)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEES
T ss_pred cceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEEe
Confidence 34556777 5666554 34578899999998876554 2334566789999 898887765 67899999
Q ss_pred CCCceEEEEecCC--CC-----------------EEEEEEccCCCEEEEEeC-CCcEEEEE
Q 002086 624 ISDRLVVDWTDLH--EM-----------------VTAACYTPDGQNALIGSH-KGSCRLYS 664 (969)
Q Consensus 624 l~~~~~~~~~~~~--~~-----------------V~sv~fspdg~~Lasgs~-dg~I~IwD 664 (969)
..++....+.... .. -..+-|+|||++||.... +..|..|.
T Consensus 141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~ 201 (465)
T d1xfda1 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME 201 (465)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceee
Confidence 8777655443221 11 246789999999998653 33344443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.002 Score=72.14 Aligned_cols=143 Identities=13% Similarity=0.177 Sum_probs=92.3
Q ss_pred EecCCcEEEEEeCCCcEEEEECCCCcEEEEee----cCCCeEEEEEecCCCCEEEEEE---------CCCeEEEEeCCCc
Q 002086 561 SWSRSHLLLSSSMDKTVRLWDMETKSCLKLFA----HNDYVTCIQFNPMDDDYFISGS---------LDAKVRIWSISDR 627 (969)
Q Consensus 561 ~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~~----h~~~V~sv~fsp~~~~~L~sgs---------~Dg~I~IWDl~~~ 627 (969)
.|.++..++.-..+|.|.+||+.+++....+. ....+....|+| ++++++... ..+.+.++|+.++
T Consensus 23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 46663334444667889999999888765552 223677888999 899887764 3578899999998
Q ss_pred eEEEEecC---CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecc-cc---------cCCCCCeEEEEE
Q 002086 628 LVVDWTDL---HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQT-KK---------KSSTRKITGFQF 694 (969)
Q Consensus 628 ~~~~~~~~---~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~-~~---------~~h~~~It~l~f 694 (969)
....+... ...+....|+|||+.||... ++.|.+.+..++...+...-.... .. ......-.++.|
T Consensus 102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W 180 (465)
T d1xfda1 102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW 180 (465)
T ss_dssp CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEE
Confidence 87665433 23456689999999998875 678888888776543321100000 00 000122357889
Q ss_pred cCCCCceEEEEe
Q 002086 695 SPSNPSEVLVTS 706 (969)
Q Consensus 695 spd~~~~l~sgs 706 (969)
+||+ ..|+...
T Consensus 181 SPDg-k~iaf~~ 191 (465)
T d1xfda1 181 SPDG-TRLAYAA 191 (465)
T ss_dssp CTTS-SEEEEEE
T ss_pred CCCC-CeEEEEE
Confidence 9999 5565543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.64 E-value=0.42 Score=48.04 Aligned_cols=201 Identities=7% Similarity=0.002 Sum_probs=125.2
Q ss_pred eccCCCCEEEEEecC-CcEEEE-EeCCCcEEEEECCCCcEEEEee-cCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 002086 550 FIGHLDDVLDLSWSR-SHLLLS-SSMDKTVRLWDMETKSCLKLFA-HNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISD 626 (969)
Q Consensus 550 l~gH~~~I~~l~fs~-~~~L~S-gs~DgtV~IWDl~t~~~i~~~~-h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~ 626 (969)
+..+...+.+|+|.. ++.|.- -..++.|+..++.......... ....+.+|++....+.+..+-...+.|.+.++..
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg 110 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence 344555688899986 555444 4567889999988766555553 3367899999874444555556678999999987
Q ss_pred ceEEEEecC-CCCEEEEEEccCCCEEEEEeCC-C--cEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceE
Q 002086 627 RLVVDWTDL-HEMVTAACYTPDGQNALIGSHK-G--SCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEV 702 (969)
Q Consensus 627 ~~~~~~~~~-~~~V~sv~fspdg~~Lasgs~d-g--~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l 702 (969)
.....+... ...+..++++|...++...... + .|.-.++......... ........+|++.+.+..++
T Consensus 111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~--------~~~~~~P~glaiD~~~~~lY 182 (263)
T d1npea_ 111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA--------QDNLGLPNGLTFDAFSSQLC 182 (263)
T ss_dssp CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE--------CTTCSCEEEEEEETTTTEEE
T ss_pred ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee--------eecccccceEEEeecCcEEE
Confidence 654444333 3678999999987777654322 2 3444456544322111 12334568999998775555
Q ss_pred EEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 703 LVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 703 ~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
.+-...+.|...+........... ......++++. ++.+..+-...+.|...|..+
T Consensus 183 w~d~~~~~I~~~~~~g~~~~~v~~-~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~ 238 (263)
T d1npea_ 183 WVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI 238 (263)
T ss_dssp EEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCEEEEEECCCCCeEEEEC-CCCCcEEEEEE-CCEEEEEECCCCEEEEEECCC
Confidence 655677889888865433222111 12223567765 344444545667888888876
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.54 E-value=0.042 Score=59.24 Aligned_cols=172 Identities=9% Similarity=0.069 Sum_probs=99.9
Q ss_pred cEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCC---------------eEEEE------------------
Q 002086 576 TVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDA---------------KVRIW------------------ 622 (969)
Q Consensus 576 tV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg---------------~I~IW------------------ 622 (969)
.+.++|..+.+......-......+.+++ ++.++++.+.+. .+.++
T Consensus 174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein 252 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 252 (459)
T ss_dssp EEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEEEecCCceEEEEeeeCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence 35678888888777766666777889999 888888776431 13333
Q ss_pred -----eCCCc---eEEEEecCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeeec---ccccCCCCCeE
Q 002086 623 -----SISDR---LVVDWTDLHEMVTAACYTPDGQNALIGS-HKGSCRLYSIEDSKLHQLNQVDFQ---TKKKSSTRKIT 690 (969)
Q Consensus 623 -----Dl~~~---~~~~~~~~~~~V~sv~fspdg~~Lasgs-~dg~I~IwDl~~~~~~~~~~~~~~---~~~~~h~~~It 690 (969)
|.+.. .+..+.........+.++|||+++++++ .+.++.|+|++............. .........-.
T Consensus 253 gV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL 332 (459)
T d1fwxa2 253 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL 332 (459)
T ss_dssp TEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE
T ss_pred CceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc
Confidence 33321 1222333334456789999999988755 688999999974321100000000 00112334456
Q ss_pred EEEEcCCCCceEEEEeCCCcEEEEeCCc------------ceEEEEeecCCCCeE---EEEEeCCCCEEEEEeC
Q 002086 691 GFQFSPSNPSEVLVTSADSRIRILDGLD------------IVHKFRGFRNTSSQI---SAAFNADGKYIISASE 749 (969)
Q Consensus 691 ~l~fspd~~~~l~sgs~Dg~I~IwD~~~------------~~~~~~~~~~~~~V~---sl~fspdg~~LaSgs~ 749 (969)
.-+|...| .-+.+---|.+|.-|++.. ...++..|-..+... .-...|||++|++...
T Consensus 333 ht~fd~~g-~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk 405 (459)
T d1fwxa2 333 HTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 405 (459)
T ss_dssp EEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ccccCCCc-eEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecc
Confidence 67788776 5555567899999999432 222332221111110 0123689999998864
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.35 E-value=0.071 Score=56.36 Aligned_cols=201 Identities=9% Similarity=0.046 Sum_probs=105.6
Q ss_pred EEEecC-CcEEEEEeCC-CcEEEEECCCCcEEEEe--ecCCCeEEEEEecCCCCEEEEEECC------CeEEEEeCCCce
Q 002086 559 DLSWSR-SHLLLSSSMD-KTVRLWDMETKSCLKLF--AHNDYVTCIQFNPMDDDYFISGSLD------AKVRIWSISDRL 628 (969)
Q Consensus 559 ~l~fs~-~~~L~Sgs~D-gtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~~~~~L~sgs~D------g~I~IWDl~~~~ 628 (969)
..++.+ +.+++.|+.+ ..+.+||..+......- .....-.+++..+ ++.+++.|+.+ ..+.+||..+.+
T Consensus 80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred EEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCCCc
Confidence 344555 6777777655 68999999887765432 1222233456666 78888888753 358999998876
Q ss_pred EEEEecCC---------------CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEE
Q 002086 629 VVDWTDLH---------------EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQ 693 (969)
Q Consensus 629 ~~~~~~~~---------------~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~ 693 (969)
-....... .....+...++|+.++.+...+.+.+++........................-.++.
T Consensus 159 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (387)
T d1k3ia3 159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 238 (387)
T ss_dssp EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence 44322111 011123344567777777777788888887765543322211111111111122333
Q ss_pred EcCCCCceEEEEeCCC--------cEEEEeCCc---ceEEEEee---cCCCCeEEEEEeCCCCEEEEEeCCC--------
Q 002086 694 FSPSNPSEVLVTSADS--------RIRILDGLD---IVHKFRGF---RNTSSQISAAFNADGKYIISASEDS-------- 751 (969)
Q Consensus 694 fspd~~~~l~sgs~Dg--------~I~IwD~~~---~~~~~~~~---~~~~~V~sl~fspdg~~LaSgs~Dg-------- 751 (969)
+...+.+.++.|+... ...+.+... ........ .....-.+....+||++++.|+.+.
T Consensus 239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~ 318 (387)
T d1k3ia3 239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318 (387)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence 3333335666665321 223333211 11111111 1111223456678999999988542
Q ss_pred ---cEEEEEcCC
Q 002086 752 ---QVYVWKREE 760 (969)
Q Consensus 752 ---~I~IWdl~t 760 (969)
.+.+||..+
T Consensus 319 ~~~~ve~Ydp~~ 330 (387)
T d1k3ia3 319 PVFTPEIYVPEQ 330 (387)
T ss_dssp BCCCCEEEEGGG
T ss_pred EeceEEEEECCC
Confidence 467788765
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.31 E-value=0.099 Score=51.99 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=72.1
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEEC-C-----CeEEEEeCCCceEEEEecCC--
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSL-D-----AKVRIWSISDRLVVDWTDLH-- 636 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~-D-----g~I~IWDl~~~~~~~~~~~~-- 636 (969)
++.++.. .++.|.+.|+.+++..++..+.+.+...+|+| +++.|+.... + ..|.+++..+++...+....
T Consensus 12 G~~v~f~-~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~ 89 (281)
T d1k32a2 12 GDRIIFV-CCDDLWEHDLKSGSTRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK 89 (281)
T ss_dssp TTEEEEE-ETTEEEEEETTTCCEEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred CCEEEEE-eCCcEEEEECCCCCEEEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCC
Confidence 3455444 34568888999999887777888899999999 9998876542 2 24888888888877664433
Q ss_pred -----CCEEEEEEccCCCEEEEEeCC------CcEEEEEcCCCc
Q 002086 637 -----EMVTAACYTPDGQNALIGSHK------GSCRLYSIEDSK 669 (969)
Q Consensus 637 -----~~V~sv~fspdg~~Lasgs~d------g~I~IwDl~~~~ 669 (969)
.......|+|+|+.|+..... ..+...+.....
T Consensus 90 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 133 (281)
T d1k32a2 90 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN 133 (281)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred ccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence 235678899999998875432 234455555443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.72 Score=46.28 Aligned_cols=210 Identities=10% Similarity=0.032 Sum_probs=126.9
Q ss_pred CCCceeEeccCCCCEEEEEecC-CcEEEEE-eCCCcEEEEECCCCc----EEEEe-ecCCCeEEEEEecCCCCEEEEEEC
Q 002086 543 SEKPFCSFIGHLDDVLDLSWSR-SHLLLSS-SMDKTVRLWDMETKS----CLKLF-AHNDYVTCIQFNPMDDDYFISGSL 615 (969)
Q Consensus 543 ~~k~~~~l~gH~~~I~~l~fs~-~~~L~Sg-s~DgtV~IWDl~t~~----~i~~~-~h~~~V~sv~fsp~~~~~L~sgs~ 615 (969)
.......+......+.+|.|.. .+.|+-. ...+.|.-.++.... ..... .....+.+|++.+..+++..+-..
T Consensus 18 ~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~ 97 (266)
T d1ijqa1 18 DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV 97 (266)
T ss_dssp TSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT
T ss_pred CCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC
Confidence 3333334445566788999987 5555544 456677777765322 11222 333567789998745556666667
Q ss_pred CCeEEEEeCCCceEEEE-ecCCCCEEEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEE
Q 002086 616 DAKVRIWSISDRLVVDW-TDLHEMVTAACYTPDGQNALIGS--HKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGF 692 (969)
Q Consensus 616 Dg~I~IWDl~~~~~~~~-~~~~~~V~sv~fspdg~~Lasgs--~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l 692 (969)
.+.|.+.++........ .........++++|...+|.... ..+.|.-.++......... ........++
T Consensus 98 ~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~--------~~~~~~p~gl 169 (266)
T d1ijqa1 98 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--------TENIQWPNGI 169 (266)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE--------CSSCSCEEEE
T ss_pred CCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc--------ccccceeeEE
Confidence 78899999987765443 33346689999999766665543 3456777777665433221 2233557899
Q ss_pred EEcCCCCceEEEEeCCCcEEEEeCCc--ceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 693 QFSPSNPSEVLVTSADSRIRILDGLD--IVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 693 ~fspd~~~~l~sgs~Dg~I~IwD~~~--~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
++.+.+..++.+-...+.|...+... ...............++++. ++.+..+-..++.|+..+..++
T Consensus 170 ~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 170 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence 99987755666667778898888543 22333333333345667776 3444445456778887776663
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.20 E-value=0.2 Score=53.85 Aligned_cols=202 Identities=14% Similarity=0.175 Sum_probs=125.3
Q ss_pred EEEecC----CcEEEEE-eCCCcEEEEECCCCcEEEEe--ecCCCeEEEEEecC-CCCEEEEEECCC-------------
Q 002086 559 DLSWSR----SHLLLSS-SMDKTVRLWDMETKSCLKLF--AHNDYVTCIQFNPM-DDDYFISGSLDA------------- 617 (969)
Q Consensus 559 ~l~fs~----~~~L~Sg-s~DgtV~IWDl~t~~~i~~~--~h~~~V~sv~fsp~-~~~~L~sgs~Dg------------- 617 (969)
.+.+.. |++|+.. ..+..|.+-|+.+.++.++. .....+..+...+. +..|++.++.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 455654 4555554 57899999999999987755 55667777766541 455777776632
Q ss_pred -----eEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCC---------------cEEEEEcCC-------Cce
Q 002086 618 -----KVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKG---------------SCRLYSIED-------SKL 670 (969)
Q Consensus 618 -----~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg---------------~I~IwDl~~-------~~~ 670 (969)
.+.++|..+.++............+.++++|+++++.+.+. .+.++++.. ++.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~ 248 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 248 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence 36788999888776665566677899999999999877532 233444311 000
Q ss_pred eee---eeeeeccc-------ccCCCCCeEEEEEcCCCCceEEEEeCCCcEEEEeCCcceEEE-----------EeecCC
Q 002086 671 HQL---NQVDFQTK-------KKSSTRKITGFQFSPSNPSEVLVTSADSRIRILDGLDIVHKF-----------RGFRNT 729 (969)
Q Consensus 671 ~~~---~~~~~~~~-------~~~h~~~It~l~fspd~~~~l~sgs~Dg~I~IwD~~~~~~~~-----------~~~~~~ 729 (969)
... ..+..... ...-......+.++|||...++++..+.++.++|..+....+ ......
T Consensus 249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg 328 (459)
T d1fwxa2 249 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 328 (459)
T ss_dssp EEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred EEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC
Confidence 000 00000000 000112345688999996666677789999999965322111 111122
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEcCC
Q 002086 730 SSQISAAFNADGKYIISASEDSQVYVWKREE 760 (969)
Q Consensus 730 ~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t 760 (969)
..-..-+|+..|.-..|---|..|.-|++..
T Consensus 329 lgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 329 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cCccccccCCCceEEEEeeccceEEEEecch
Confidence 2345678988886556666799999999864
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.53 E-value=2.6 Score=41.84 Aligned_cols=154 Identities=6% Similarity=-0.065 Sum_probs=94.5
Q ss_pred CCEEEEEecC--CcEEEEEeCCCcEEEEECCCCcEEEEeec-CCCeEEEEEecCCCCEEE-EEECCC--eEEEEeCCCce
Q 002086 555 DDVLDLSWSR--SHLLLSSSMDKTVRLWDMETKSCLKLFAH-NDYVTCIQFNPMDDDYFI-SGSLDA--KVRIWSISDRL 628 (969)
Q Consensus 555 ~~I~~l~fs~--~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h-~~~V~sv~fsp~~~~~L~-sgs~Dg--~I~IWDl~~~~ 628 (969)
..+.++++.. +.+..+-...+.|.+.++....+...+.. ...+..++++| ...+++ +-...+ .|.--++....
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp-~~g~ly~t~~~~~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTN 157 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEec-ccCcEEEeecCCCCcEEEEecCCCCC
Confidence 3466777764 44445556678999999987766555533 36789999999 455444 432222 35444665543
Q ss_pred EEEEe-cCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEEe
Q 002086 629 VVDWT-DLHEMVTAACYTPDGQNALIG-SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVTS 706 (969)
Q Consensus 629 ~~~~~-~~~~~V~sv~fspdg~~Lasg-s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sgs 706 (969)
...+. ..-.....+++.+.++.|... ...+.|...++......... .+ .....+|++. +..++.+-.
T Consensus 158 ~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~--------~~-~~~P~~lav~--~~~lYwtd~ 226 (263)
T d1npea_ 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL--------EG-LQYPFAVTSY--GKNLYYTDW 226 (263)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE--------EC-CCSEEEEEEE--TTEEEEEET
T ss_pred ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEE--------CC-CCCcEEEEEE--CCEEEEEEC
Confidence 33333 233567899999888877655 46778999998765443221 11 1224567775 324555555
Q ss_pred CCCcEEEEeCCcce
Q 002086 707 ADSRIRILDGLDIV 720 (969)
Q Consensus 707 ~Dg~I~IwD~~~~~ 720 (969)
..+.|...|.....
T Consensus 227 ~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 227 KTNSVIAMDLAISK 240 (263)
T ss_dssp TTTEEEEEETTTTE
T ss_pred CCCEEEEEECCCCc
Confidence 67788888865443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.26 E-value=3.3 Score=41.91 Aligned_cols=193 Identities=12% Similarity=0.139 Sum_probs=114.5
Q ss_pred EEecCCcEEEEEeCCCcEEEEECCC-CcEEEEee-c----CCCeEEEEEecCCCCEEEEEE-------CCCeEEEEeCCC
Q 002086 560 LSWSRSHLLLSSSMDKTVRLWDMET-KSCLKLFA-H----NDYVTCIQFNPMDDDYFISGS-------LDAKVRIWSISD 626 (969)
Q Consensus 560 l~fs~~~~L~Sgs~DgtV~IWDl~t-~~~i~~~~-h----~~~V~sv~fsp~~~~~L~sgs-------~Dg~I~IWDl~~ 626 (969)
-.|-..+.|+-.+ +..|+-|++.. ..+.+.|. | ...|..-..++ +.+.++..+ -.|.+.+|..+.
T Consensus 108 WkWis~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er 185 (327)
T d1utca2 108 WKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDR 185 (327)
T ss_dssp EEESSSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred EEecCCCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEecc
Confidence 3444444444443 35688899853 24556662 2 34566666776 666555432 237789999988
Q ss_pred ceEEEEecCCCCEEEEEEccCC---CEEEEE---eCCCcEEEEEcCCCc----eeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 627 RLVVDWTDLHEMVTAACYTPDG---QNALIG---SHKGSCRLYSIEDSK----LHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 627 ~~~~~~~~~~~~V~sv~fspdg---~~Lasg---s~dg~I~IwDl~~~~----~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
+.-..+.+|...-..+.+.-+. ..|+.+ ...+.++|.++.... .......++............++..++
T Consensus 186 ~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~ 265 (327)
T d1utca2 186 KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE 265 (327)
T ss_dssp TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET
T ss_pred CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec
Confidence 7666555554433333222111 122222 233688899886532 111222223333344456677888888
Q ss_pred CCCceEEEEeCCCcEEEEeCCcceEEEEeecCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 002086 697 SNPSEVLVTSADSRIRILDGLDIVHKFRGFRNTSSQISAAFNADGKYIISASEDSQVYV 755 (969)
Q Consensus 697 d~~~~l~sgs~Dg~I~IwD~~~~~~~~~~~~~~~~V~sl~fspdg~~LaSgs~Dg~I~I 755 (969)
.. ..+..-+.-|.|++||+.+....+...-....|...+-..+..=+++-..+|.|.-
T Consensus 266 ky-giiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 266 KH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp TT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred cC-CEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 66 68888999999999999998888877666666665555555445555566776653
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.06 E-value=6.6 Score=41.53 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=27.9
Q ss_pred ccccCEEEEEEeCCCCEEEEE-eC----CCcEEEEecccceEEE
Q 002086 449 AHEGSIWTIKFSLDARFLASA-GE----DRVIHVWEVQECEVMS 487 (969)
Q Consensus 449 gH~~~I~~l~fSpDg~~LaTg-s~----DgtVrIWDl~tg~~l~ 487 (969)
++.-.+..+++|||+++||-+ +. -.+|++.|+.+++.+.
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~ 165 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP 165 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecc
Confidence 344445677889999988743 22 3479999999998764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.67 E-value=5.9 Score=39.98 Aligned_cols=176 Identities=15% Similarity=0.206 Sum_probs=109.4
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCc-eEEEEecCC-----CCEEEEEEccC
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDR-LVVDWTDLH-----EMVTAACYTPD 647 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~-~~~~~~~~~-----~~V~sv~fspd 647 (969)
..++.|+|+++.+.++.+.....|.-=.|- +.+.|+-.. +..|+-|++... .+...+..+ ..|..-..+++
T Consensus 82 g~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~ 158 (327)
T d1utca2 82 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK 158 (327)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCCEEEES--SSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred CCeEEEEehhHhhhhceEEcCCCcEEEEec--CCCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCC
Confidence 678999999999999999888888777776 466666654 467999999542 344433322 45777788889
Q ss_pred CCEEEEEe---C----CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC--CCCceEEEE---eCCCcEEEEe
Q 002086 648 GQNALIGS---H----KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP--SNPSEVLVT---SADSRIRILD 715 (969)
Q Consensus 648 g~~Lasgs---~----dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp--d~~~~l~sg---s~Dg~I~IwD 715 (969)
.++++..+ . .|.+.+|..+....... .+|......+.+.- ....+++.+ ...+.+.|.+
T Consensus 159 ~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~i---------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiE 229 (327)
T d1utca2 159 QKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE 229 (327)
T ss_dssp SCEEEEEEEEEETTEEEEEEEEEETTTTEEEEE---------CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEeEecCCCceeEEEEEEEeccCcCccc---------cceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEE
Confidence 99877533 2 46788998877644322 22222222221110 000111111 2236777877
Q ss_pred CCcc--------eEEEEeec----CCCCeEEEEEeCCCCEEEEEeCCCcEEEEEcCCC
Q 002086 716 GLDI--------VHKFRGFR----NTSSQISAAFNADGKYIISASEDSQVYVWKREEH 761 (969)
Q Consensus 716 ~~~~--------~~~~~~~~----~~~~V~sl~fspdg~~LaSgs~Dg~I~IWdl~t~ 761 (969)
+... ......+- ...--.++..++.-..+..-+.-|.|++||++++
T Consensus 230 ig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg 287 (327)
T d1utca2 230 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 287 (327)
T ss_dssp CSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred cCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc
Confidence 4321 11111111 1233457888888888999999999999999994
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=92.43 E-value=10 Score=42.11 Aligned_cols=99 Identities=10% Similarity=0.006 Sum_probs=62.4
Q ss_pred CCcEEEEECCCCcEEEEeecC--------------------------------------CC-eEEEEEecCCCCEEEEEE
Q 002086 574 DKTVRLWDMETKSCLKLFAHN--------------------------------------DY-VTCIQFNPMDDDYFISGS 614 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~--------------------------------------~~-V~sv~fsp~~~~~L~sgs 614 (969)
.|.|+-+|+.+|+.+-.+... .. -..+.+.+ ..++++.+.
T Consensus 181 ~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~t 259 (596)
T d1w6sa_ 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGT 259 (596)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred cCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc-CCCeeeccc
Confidence 488999999999998765211 01 12345666 555555543
Q ss_pred C----------------CCeEEEEeCCCceEEEEecC--C--------CCEEEEE-EccCCC---EEEEEeCCCcEEEEE
Q 002086 615 L----------------DAKVRIWSISDRLVVDWTDL--H--------EMVTAAC-YTPDGQ---NALIGSHKGSCRLYS 664 (969)
Q Consensus 615 ~----------------Dg~I~IWDl~~~~~~~~~~~--~--------~~V~sv~-fspdg~---~Lasgs~dg~I~IwD 664 (969)
. ...|.-.|+.+++++-.+.. + ..+..+. ...+|+ .++.+..+|.+.++|
T Consensus 260 g~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlD 339 (596)
T d1w6sa_ 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD 339 (596)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeec
Confidence 2 24477889999987753332 1 1122222 233443 577788999999999
Q ss_pred cCCCceeee
Q 002086 665 IEDSKLHQL 673 (969)
Q Consensus 665 l~~~~~~~~ 673 (969)
..+++++..
T Consensus 340 r~tG~~i~~ 348 (596)
T d1w6sa_ 340 RTDGALVSA 348 (596)
T ss_dssp TTTCCEEEE
T ss_pred CCCCceeee
Confidence 999987654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.30 E-value=2.7 Score=46.88 Aligned_cols=84 Identities=8% Similarity=-0.045 Sum_probs=52.2
Q ss_pred CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 617 AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
|.|.-+|+.+++++-.........+-.+.-.+.++++|+.||.++-+|.++++.+-...+. ......+++ |..
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~----~~~~a~P~t---y~~ 516 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP----SGGIGSPMT---YSF 516 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS----SCCCSCCEE---EEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECC----CCceecceE---EEE
Confidence 4677788888877654443332222222335668888999999999999999987554321 123333433 444
Q ss_pred CCCceEEEEeC
Q 002086 697 SNPSEVLVTSA 707 (969)
Q Consensus 697 d~~~~l~sgs~ 707 (969)
+|.+++++...
T Consensus 517 dGkqYi~v~~g 527 (571)
T d2ad6a1 517 KGKQYIGSMYG 527 (571)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEEec
Confidence 77677766543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=92.05 E-value=2.1 Score=47.72 Aligned_cols=80 Identities=8% Similarity=0.071 Sum_probs=58.1
Q ss_pred CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEE--EEEEccCCC-EE
Q 002086 575 KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVT--AACYTPDGQ-NA 651 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~--sv~fspdg~-~L 651 (969)
|.|.-||+.+++.+-.+....+..+-.+.- .+.++++|+.||.++.+|..+++++-.+.....+. -+.|..+|+ ||
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv 516 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV 516 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 678889999999998876555544433343 57888899999999999999999987665554332 356667785 55
Q ss_pred EEEe
Q 002086 652 LIGS 655 (969)
Q Consensus 652 asgs 655 (969)
++..
T Consensus 517 ~v~a 520 (560)
T d1kv9a2 517 AIMA 520 (560)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=6.3 Score=38.85 Aligned_cols=177 Identities=8% Similarity=-0.063 Sum_probs=109.5
Q ss_pred CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEE-ECCCeEEEEeCCCce----EEE-EecCCCCEEEEEEccCC
Q 002086 575 KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISG-SLDAKVRIWSISDRL----VVD-WTDLHEMVTAACYTPDG 648 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sg-s~Dg~I~IWDl~~~~----~~~-~~~~~~~V~sv~fspdg 648 (969)
..|+..++.+.+..........+.+|+|++ ..+.|+-. ...+.|.-.++.... ... .......+..+++.+.+
T Consensus 10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~-~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~ 88 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (266)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCCCcceeeeCCCCceEEEEEEe-CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence 358888998877776676777888999998 55555544 456667766665321 112 22223456789998866
Q ss_pred CEEEEE-eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEEE-eCCCcEEEEeCCcceEEEEee
Q 002086 649 QNALIG-SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLVT-SADSRIRILDGLDIVHKFRGF 726 (969)
Q Consensus 649 ~~Lasg-s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~sg-s~Dg~I~IwD~~~~~~~~~~~ 726 (969)
..|... ...+.|.+.++......... .........++++|..+.++.+. +..+.|.-.++..........
T Consensus 89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~--------~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~ 160 (266)
T d1ijqa1 89 SNIYWTDSVLGTVSVADTKGVKRKTLF--------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEE--------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred ceEEEEecCCCEEEeEecCCceEEEEE--------cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence 666654 45678999999876543221 22345678899998764444443 233456666644322222122
Q ss_pred cCCCCeEEEEEeCCCCEEEEE-eCCCcEEEEEcCC
Q 002086 727 RNTSSQISAAFNADGKYIISA-SEDSQVYVWKREE 760 (969)
Q Consensus 727 ~~~~~V~sl~fspdg~~LaSg-s~Dg~I~IWdl~t 760 (969)
........+++++.++.|.-+ ...+.|...+++.
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG 195 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cccceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence 233456789999877766655 5567888888875
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.49 E-value=0.73 Score=51.78 Aligned_cols=80 Identities=10% Similarity=-0.073 Sum_probs=57.5
Q ss_pred CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEE--EEEEccCCC-EE
Q 002086 575 KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVT--AACYTPDGQ-NA 651 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~--sv~fspdg~-~L 651 (969)
|.|.-+|+.+++.+-.+.+..+..+-.+.. .+.++++|+.||.++.+|.++++.+-.......+. -+.|..+|+ ||
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi 522 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence 679999999999988775554433322332 57788889999999999999999987666554433 366777886 55
Q ss_pred EEEe
Q 002086 652 LIGS 655 (969)
Q Consensus 652 asgs 655 (969)
++..
T Consensus 523 ~v~~ 526 (571)
T d2ad6a1 523 GSMY 526 (571)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=91.19 E-value=1.1 Score=46.52 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=73.4
Q ss_pred CcEEEEEeCCC-----------cEEEEECCCCcEEE----EeecCCCeEEEEEecCCCCEEEEEECC-CeEEEEeCCCce
Q 002086 565 SHLLLSSSMDK-----------TVRLWDMETKSCLK----LFAHNDYVTCIQFNPMDDDYFISGSLD-AKVRIWSISDRL 628 (969)
Q Consensus 565 ~~~L~Sgs~Dg-----------tV~IWDl~t~~~i~----~~~h~~~V~sv~fsp~~~~~L~sgs~D-g~I~IWDl~~~~ 628 (969)
++.++.|+.+. .+.+||..++.-.. ...+.......++.+ ++.+++.|+.+ ..+.+||..+..
T Consensus 31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~ 109 (387)
T d1k3ia3 31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDS 109 (387)
T ss_dssp TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCcceeEecCccCc
Confidence 67777777431 37799999876432 223444455667877 88888888765 579999998876
Q ss_pred EEEEecCC--CCEEEEEEccCCCEEEEEeCC------CcEEEEEcCCCceee
Q 002086 629 VVDWTDLH--EMVTAACYTPDGQNALIGSHK------GSCRLYSIEDSKLHQ 672 (969)
Q Consensus 629 ~~~~~~~~--~~V~sv~fspdg~~Lasgs~d------g~I~IwDl~~~~~~~ 672 (969)
-....... ..-..++..+||+.++.|+.. ..+.+||..+.+...
T Consensus 110 w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~ 161 (387)
T d1k3ia3 110 WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 161 (387)
T ss_dssp EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred ccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceee
Confidence 55433222 223467778899999988753 368999998876543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=90.85 E-value=0.97 Score=50.72 Aligned_cols=80 Identities=11% Similarity=0.107 Sum_probs=56.9
Q ss_pred CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEE--EEEEccCCC-EE
Q 002086 575 KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVT--AACYTPDGQ-NA 651 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~--sv~fspdg~-~L 651 (969)
|.|.-||+.+++.+-.+.+..+...=...- .+.++++|+.||.++.+|.++|+.+-.+.....+. -+.|..+|+ ||
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv 535 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 578899999999988776554433322333 67888899999999999999999887665554332 256666786 44
Q ss_pred EEEe
Q 002086 652 LIGS 655 (969)
Q Consensus 652 asgs 655 (969)
++..
T Consensus 536 ~v~~ 539 (573)
T d1kb0a2 536 SVAV 539 (573)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4433
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.73 E-value=3.8 Score=42.57 Aligned_cols=151 Identities=13% Similarity=0.182 Sum_probs=88.7
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEEecCCCCEEEEEEc------cCCCEEEEEeC--C--CcEEEEEcCCCceeeeee
Q 002086 606 DDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMVTAACYT------PDGQNALIGSH--K--GSCRLYSIEDSKLHQLNQ 675 (969)
Q Consensus 606 ~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V~sv~fs------pdg~~Lasgs~--d--g~I~IwDl~~~~~~~~~~ 675 (969)
...+++.....+-|++||+. |+.+.... .+.++.|..- .....+++++. + .+|.+|.+........ .
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~-~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ-S 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE-E
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc-c
Confidence 45677777777779999997 55454443 2445555443 22234555553 2 3688888753321110 1
Q ss_pred eee-cccccCCCCCeEEEEE--cCCCC-ceEEEEeCCCcEEEEeC---Cc---ceEEEEeecCCCCeEEEEEeCCCCEEE
Q 002086 676 VDF-QTKKKSSTRKITGFQF--SPSNP-SEVLVTSADSRIRILDG---LD---IVHKFRGFRNTSSQISAAFNADGKYII 745 (969)
Q Consensus 676 ~~~-~~~~~~h~~~It~l~f--spd~~-~~l~sgs~Dg~I~IwD~---~~---~~~~~~~~~~~~~V~sl~fspdg~~La 745 (969)
+.. ..........++++|+ ++.++ .++++...+|.+..|.+ .+ .......+.....+..|.+......|.
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly 195 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY 195 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence 100 0001112234677777 66543 35677778899888863 21 123334455667788999999999999
Q ss_pred EEeCCCcEEEEEcC
Q 002086 746 SASEDSQVYVWKRE 759 (969)
Q Consensus 746 Sgs~Dg~I~IWdl~ 759 (969)
.+-++..|..++.+
T Consensus 196 isEE~~Giw~~~a~ 209 (353)
T d1h6la_ 196 IAEEDEAIWKFSAE 209 (353)
T ss_dssp EEETTTEEEEEESS
T ss_pred EecCccceEEEEec
Confidence 99888766555554
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=90.34 E-value=2.6 Score=46.78 Aligned_cols=86 Identities=9% Similarity=0.093 Sum_probs=56.1
Q ss_pred CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 617 AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
|.|.-||+.+++++-..........-.+.-.+.++++|+.||.++-||..+++.+-...+. ...+..++ .|.-
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~----~~~~~~P~---ty~~ 510 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ----SGIVAAPM---TFEL 510 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS----SCCCSCCE---EEEE
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECC----CCccccCE---EEEE
Confidence 5688899999988766555444333334445778889999999999999999987554332 12223333 3344
Q ss_pred CCCceEEEEeCCC
Q 002086 697 SNPSEVLVTSADS 709 (969)
Q Consensus 697 d~~~~l~sgs~Dg 709 (969)
+|.++|++....|
T Consensus 511 dGkqyv~v~aG~g 523 (560)
T d1kv9a2 511 AGRQYVAIMAGWG 523 (560)
T ss_dssp TTEEEEEEEECCC
T ss_pred CCEEEEEEEeCCC
Confidence 6666766655443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.72 E-value=12 Score=38.18 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=71.1
Q ss_pred CCCcEEEEECCCCc--EE--EEee--cCCCeEEEEEecCCCCEEEEEE--C-------------CCeEEEEeCCCceEEE
Q 002086 573 MDKTVRLWDMETKS--CL--KLFA--HNDYVTCIQFNPMDDDYFISGS--L-------------DAKVRIWSISDRLVVD 631 (969)
Q Consensus 573 ~DgtV~IWDl~t~~--~i--~~~~--h~~~V~sv~fsp~~~~~L~sgs--~-------------Dg~I~IWDl~~~~~~~ 631 (969)
...+|.+|++.... .. ..+. .....+.|++.. ++.+++|-. . -+...+|....+....
T Consensus 122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~ 200 (340)
T d1v04a_ 122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV 200 (340)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEE
T ss_pred CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEE
Confidence 45678888775432 22 2222 234578888887 777777621 1 1233444444444433
Q ss_pred EecCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCceEEE
Q 002086 632 WTDLHEMVTAACYTPDGQNALIG-SHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPSEVLV 704 (969)
Q Consensus 632 ~~~~~~~V~sv~fspdg~~Lasg-s~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~~l~s 704 (969)
....-...+.|+++|++++|+++ +..+.|++|++........... ..-....-.+.+.+.++.++++
T Consensus 201 ~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~------~~l~~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 201 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV------LSFDTLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE------EECSSEEEEEEECTTTCCEEEE
T ss_pred EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEE------ecCCCCCCccEEecCCCEEEEE
Confidence 33444568999999999887765 4678999999976543222111 1123445667776644334333
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=88.74 E-value=2.1 Score=47.86 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=53.3
Q ss_pred CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 617 AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
|.|.-||+.+++++-......+...-.+.-.|.+|++|+.||.++.||.++++.+-..... ......+++ |..
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~----~~~~~~P~t---y~~ 529 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG----TGVVAAPST---YMV 529 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS----SCCCSCCEE---EEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC----CCccccCEE---EEE
Confidence 3577788888887755544433322233446778889999999999999999987554332 123334433 334
Q ss_pred CCCceEEEEeC
Q 002086 697 SNPSEVLVTSA 707 (969)
Q Consensus 697 d~~~~l~sgs~ 707 (969)
+|.++|++.+.
T Consensus 530 ~GkQYv~v~~G 540 (573)
T d1kb0a2 530 DGRQYVSVAVG 540 (573)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEEeC
Confidence 67566666544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.00 E-value=2.1 Score=46.27 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=44.3
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCC
Q 002086 636 HEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPS 697 (969)
Q Consensus 636 ~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd 697 (969)
-...++|+|.|+|++|++--..|.|++++..++.......+...............|+|+|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 35688999999998887765579999999888776554433222222334567899999995
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.52 E-value=21 Score=37.22 Aligned_cols=99 Identities=11% Similarity=0.143 Sum_probs=60.6
Q ss_pred CEEEEEecC-CcEEE-EEeCC----CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECC-------------
Q 002086 556 DVLDLSWSR-SHLLL-SSSMD----KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLD------------- 616 (969)
Q Consensus 556 ~I~~l~fs~-~~~L~-Sgs~D----gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~D------------- 616 (969)
.+..++++| +++++ +-+.. ..|+++|+.+++.+...-.......++|.+ ++..|+-...+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcC-CCCEEEEEEeccccCccccccccc
Confidence 344566788 55555 33333 369999999999775331122235688998 77766544332
Q ss_pred ---CeEEEEeCCCce---EEEEecC--CCCEEEEEEccCCCEEEEEe
Q 002086 617 ---AKVRIWSISDRL---VVDWTDL--HEMVTAACYTPDGQNALIGS 655 (969)
Q Consensus 617 ---g~I~IWDl~~~~---~~~~~~~--~~~V~sv~fspdg~~Lasgs 655 (969)
..|..+.+.+.. .+.+... ...+..+..+.++++++...
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~ 251 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI 251 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence 257788776642 2222222 23467788899999887543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.72 E-value=4.7 Score=44.81 Aligned_cols=80 Identities=8% Similarity=-0.002 Sum_probs=58.6
Q ss_pred CCcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCE--EEEEEccCCC-E
Q 002086 574 DKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMV--TAACYTPDGQ-N 650 (969)
Q Consensus 574 DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V--~sv~fspdg~-~ 650 (969)
.|.|.-+|+.+++.+-.+....++..-.... .+.++++|+.||.++.+|..+|+++-.+.....+ .-+.|..+|+ |
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 4789999999999988776555544333333 6788889999999999999999998766655433 2367777885 5
Q ss_pred EEEE
Q 002086 651 ALIG 654 (969)
Q Consensus 651 Lasg 654 (969)
+++.
T Consensus 544 v~i~ 547 (582)
T d1flga_ 544 LGVT 547 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=85.57 E-value=2.2 Score=47.97 Aligned_cols=79 Identities=13% Similarity=0.012 Sum_probs=57.3
Q ss_pred CcEEEEECCCCcEEEEeecCCCeEEEEEecCCCCEEEEEECCCeEEEEeCCCceEEEEecCCCCE--EEEEEccCCC-EE
Q 002086 575 KTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDDDYFISGSLDAKVRIWSISDRLVVDWTDLHEMV--TAACYTPDGQ-NA 651 (969)
Q Consensus 575 gtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~~~L~sgs~Dg~I~IWDl~~~~~~~~~~~~~~V--~sv~fspdg~-~L 651 (969)
|.|.-||+.+++.+-...+..++.+-.+.. .+.+++.|+.||.++.+|..+|+++-.+.....+ .-+.|..+|+ ||
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv 531 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceEEEEeCCCCceecccCCCCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence 679999999999987776555544434444 6788888999999999999999998766554332 2355666776 45
Q ss_pred EEE
Q 002086 652 LIG 654 (969)
Q Consensus 652 asg 654 (969)
++.
T Consensus 532 av~ 534 (596)
T d1w6sa_ 532 AIY 534 (596)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.46 E-value=3 Score=46.48 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=55.3
Q ss_pred CeEEEEeCCCceEEEEecCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC
Q 002086 617 AKVRIWSISDRLVVDWTDLHEMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP 696 (969)
Q Consensus 617 g~I~IWDl~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp 696 (969)
|.|.-+|+.+++++-......++..-.++-.+.++++|+.||.++-||.++++.+-...+. ...+..++ .|..
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~----~~~~~~P~---ty~~ 538 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG----SGIVSPPI---TWEQ 538 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS----SCCCSCCE---EEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECC----CCccccCE---EEEE
Confidence 5688888888887765554444433334456778889999999999999999987654332 12333343 3455
Q ss_pred CCCceEEEEe
Q 002086 697 SNPSEVLVTS 706 (969)
Q Consensus 697 d~~~~l~sgs 706 (969)
+|.+++++..
T Consensus 539 ~G~qYv~i~a 548 (582)
T d1flga_ 539 DGEQYLGVTV 548 (582)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 7766766654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=84.46 E-value=24 Score=36.06 Aligned_cols=142 Identities=11% Similarity=0.135 Sum_probs=85.9
Q ss_pred cEEEEECCC-CcEEEEee--------cCCCeEEEEE--ecCCCC-EEEEEECCCeEEEEeCC---Cc----eEEEEecCC
Q 002086 576 TVRLWDMET-KSCLKLFA--------HNDYVTCIQF--NPMDDD-YFISGSLDAKVRIWSIS---DR----LVVDWTDLH 636 (969)
Q Consensus 576 tV~IWDl~t-~~~i~~~~--------h~~~V~sv~f--sp~~~~-~L~sgs~Dg~I~IWDl~---~~----~~~~~~~~~ 636 (969)
+|.+|.+.. ...+..+. -...+..+|+ ++.++. ++++...+|.+..|.+. .+ +.+..+...
T Consensus 100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~ 179 (353)
T d1h6la_ 100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN 179 (353)
T ss_dssp EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence 577787752 33333331 1234677777 554454 56677788999888763 22 344556667
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcC--CCCceEEEE-eCCCcEEE
Q 002086 637 EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSP--SNPSEVLVT-SADSRIRI 713 (969)
Q Consensus 637 ~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fsp--d~~~~l~sg-s~Dg~I~I 713 (969)
..+..|.+......|+++-++..|..++...........+ ...........+-.|+.-. ++..+|+++ -.+++..|
T Consensus 180 ~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i-~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v 258 (353)
T d1h6la_ 180 SQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVI-DRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI 258 (353)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEE-EECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred CccceEEEeCCCCcEEEecCccceEEEEeccCCCccceee-ecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence 7899999999999999999888877777653322111111 1111123456777777553 333355444 45778999
Q ss_pred EeCCc
Q 002086 714 LDGLD 718 (969)
Q Consensus 714 wD~~~ 718 (969)
||...
T Consensus 259 ydr~~ 263 (353)
T d1h6la_ 259 YERQG 263 (353)
T ss_dssp EESST
T ss_pred EecCC
Confidence 99543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.77 E-value=7.6 Score=36.99 Aligned_cols=190 Identities=13% Similarity=0.156 Sum_probs=106.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecCCCeEEEEEecCCC-CEEEEE------ECCCeEEEEeCCC-ceEEEEecCC
Q 002086 565 SHLLLSSSMDKTVRLWDMETKSCLKLFAHNDYVTCIQFNPMDD-DYFISG------SLDAKVRIWSISD-RLVVDWTDLH 636 (969)
Q Consensus 565 ~~~L~Sgs~DgtV~IWDl~t~~~i~~~~h~~~V~sv~fsp~~~-~~L~sg------s~Dg~I~IWDl~~-~~~~~~~~~~ 636 (969)
+++|+++...|.|.++-+..++.++.- ..+|.... .|..+ .+++.+ -.-..|++-++.. ++-.......
T Consensus 26 d~ll~~~~seG~vni~~l~g~~~vkLt--kePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk 102 (313)
T d2hu7a1 26 DKLLVVGFSEGSVNAYLYDGGETVKLN--REPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK 102 (313)
T ss_dssp TEEEEEEEETTEEEEEEESSSSCEECC--SSCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSC
T ss_pred CcEEEEEeccceEEEEEEeCCEEEEEe--cccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCc
Confidence 568888888999999988887766543 22222211 11011 111111 1112344444441 2222222222
Q ss_pred -CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeee-cccccCCCCCeEEEEEcCCCCceEEEEeC-CCcEEE
Q 002086 637 -EMVTAACYTPDGQNALIGSHKGSCRLYSIEDSKLHQLNQVDF-QTKKKSSTRKITGFQFSPSNPSEVLVTSA-DSRIRI 713 (969)
Q Consensus 637 -~~V~sv~fspdg~~Lasgs~dg~I~IwDl~~~~~~~~~~~~~-~~~~~~h~~~It~l~fspd~~~~l~sgs~-Dg~I~I 713 (969)
-.|.++++. +.+.+++|+......+|-++.+++.....++. ..-..-...-|..+.|-..++.-++++.. .|.++|
T Consensus 103 ~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri 181 (313)
T d2hu7a1 103 PMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV 181 (313)
T ss_dssp SBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred eEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence 335555554 33567789999999999999998765544321 11112234456666666556566777766 888888
Q ss_pred EeCCcceE-------------EEEe----------ec-----------------CCCCeEEEEEeCCCCEEEEEeCCCcE
Q 002086 714 LDGLDIVH-------------KFRG----------FR-----------------NTSSQISAAFNADGKYIISASEDSQV 753 (969)
Q Consensus 714 wD~~~~~~-------------~~~~----------~~-----------------~~~~V~sl~fspdg~~LaSgs~Dg~I 753 (969)
++..+... -+.. .. ....|+-+-+.|++++++.+-.||.=
T Consensus 182 ~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s 261 (313)
T d2hu7a1 182 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRS 261 (313)
T ss_dssp ECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEE
T ss_pred ecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCch
Confidence 87332110 0000 00 12234446688999999999999999
Q ss_pred EEEEc
Q 002086 754 YVWKR 758 (969)
Q Consensus 754 ~IWdl 758 (969)
.+|.-
T Consensus 262 ~lF~n 266 (313)
T d2hu7a1 262 AVFID 266 (313)
T ss_dssp EEEET
T ss_pred heeec
Confidence 98863
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=81.28 E-value=36 Score=35.78 Aligned_cols=37 Identities=8% Similarity=0.005 Sum_probs=29.7
Q ss_pred ccCEEEEEEeCCCCEEEEEeCCCcEEEEecccceEEE
Q 002086 451 EGSIWTIKFSLDARFLASAGEDRVIHVWEVQECEVMS 487 (969)
Q Consensus 451 ~~~I~~l~fSpDg~~LaTgs~DgtVrIWDl~tg~~l~ 487 (969)
-..-++|+|.|||++|++--..|.|++++..+++...
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~ 62 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT 62 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEee
Confidence 3567899999999999887567999999887765543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=80.32 E-value=25 Score=33.29 Aligned_cols=153 Identities=12% Similarity=0.168 Sum_probs=91.9
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEECCCCcEEEEe--e--------cCCCeEEEEEecCCCCEEEEEEC-CCeEEEEe
Q 002086 555 DDVLDLSWSRSHLLLSSSMDKTVRLWDMETKSCLKLF--A--------HNDYVTCIQFNPMDDDYFISGSL-DAKVRIWS 623 (969)
Q Consensus 555 ~~I~~l~fs~~~~L~Sgs~DgtV~IWDl~t~~~i~~~--~--------h~~~V~sv~fsp~~~~~L~sgs~-Dg~I~IWD 623 (969)
-.|.++++...+...+|+....+.+|-++.|+..+.. . ..+.|..+.|...+..-|+++.. .|.++|++
T Consensus 104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t 183 (313)
T d2hu7a1 104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD 183 (313)
T ss_dssp BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence 4678888887888999998888999999998876543 2 23344455444312233444444 55566655
Q ss_pred CCCceEEEEecCCCCEEEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeeeeecccccCCCCCeEEEEEcCCCCc
Q 002086 624 ISDRLVVDWTDLHEMVTAACYTPDGQNALIGSH---KGSCRLYSIEDSKLHQLNQVDFQTKKKSSTRKITGFQFSPSNPS 700 (969)
Q Consensus 624 l~~~~~~~~~~~~~~V~sv~fspdg~~Lasgs~---dg~I~IwDl~~~~~~~~~~~~~~~~~~~h~~~It~l~fspd~~~ 700 (969)
... +.++...+.+..+. +++.+ .....-+|+++++.....-. -.....-....|+-+-+.|++ .
T Consensus 184 pke----------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P-~kd~~sy~p~~I~~~~Y~Pdd-~ 250 (313)
T d2hu7a1 184 SGE----------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELP-SKDFSSYRPTAITWLGYLPDG-R 250 (313)
T ss_dssp CSS----------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCS-SCHHHHHCCSEEEEEEECTTS-C
T ss_pred CCC----------CcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecC-cccceeecceEEEeeeeCCCC-c
Confidence 544 44555556665444 44332 11222457777665332111 011112234567778899988 6
Q ss_pred eEEEEeCCCcEEEEeCCcce
Q 002086 701 EVLVTSADSRIRILDGLDIV 720 (969)
Q Consensus 701 ~l~sgs~Dg~I~IwD~~~~~ 720 (969)
+++++-.||.-++|...+.+
T Consensus 251 L~iiakrdG~s~lF~nGk~i 270 (313)
T d2hu7a1 251 LAVVARREGRSAVFIDGERV 270 (313)
T ss_dssp EEEEEEETTEEEEEETTEEE
T ss_pred EEEEEecCCchheeecceEe
Confidence 77999999999999855433
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